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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13752-1
Contig ID Contig-U13752-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13752-1 (Contig-U13752-1Q) /CSM_Contig/Contig-U13752-1Q.Seq.d
GGTACAACAACGTATATAAATCCAGTTGGATATTTATTTGTAAAAAATTC
GAATGCTAATGTTTATGTTTATTATAATGAAACTTTGAGGAGTTCTATTG
GTTCAAACGATATATATATAATTGAAAAATTTTTGGTTTTTAACTATATT
TTCGTTGAGTCTCATATTTTGTTGACTCCGAAAGGAAATTTAATTCTAAC
ACAATTTATCAATGTTTCAAAGTATGATCTTTCAGTGTATACATATGAAA
TATATGACAAGGGGTTATTAAAAGAAACTTTTCCATTTGGTTTTGAAGAT
GGTTCAAATTTAAAAGGATTTTCACTTTCAATATCATTCCTTTTACCAAA
TGAAACTTCAAAGACTCGTCGTTTTTCAATTCAACCATTTAATTATTTTT
TAACATTCCATCTCCAATTTCTGTTATAAAACAACCAACATTATATNNNN
NNNNN
Gap no gap
Contig length 455
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 4982581
End point 4982135
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U13752
List of clone(s) 

est1=VHM733F,1,446
Translated Amino Acid sequence 
GTTTYINPVGYLFVKNSNANVYVYYNETLRSSIGSNDIYIIEKFLVFNYIFVESHILLTP
KGNLILTQFINVSKYDLSVYTYEIYDKGLLKETFPFGFEDGSNLKGFSLSISFLLPNETS
KTRRFSIQPFNYFLTFHLQFLL*nnqhyxxx
Translated Amino Acid sequence (All Frames) 
Frame A:
GTTTYINPVGYLFVKNSNANVYVYYNETLRSSIGSNDIYIIEKFLVFNYIFVESHILLTP
KGNLILTQFINVSKYDLSVYTYEIYDKGLLKETFPFGFEDGSNLKGFSLSISFLLPNETS
KTRRFSIQPFNYFLTFHLQFLL*nnqhyxxx


Frame B:
vqqri*iqldiyl*kirmlmfmfiimkl*gvllvqtiyi*lknfwfltifslslifc*lr
kei*f*hnlsmfqsmifqcihmkymtrgy*kklfhlvlkmvqi*kdfhfqyhsfyqmklq
rlvvfqfnhliif*hsisnfcykttniixxx


Frame C:
ynnvyksswifickkfec*clcll**nfeefywfkryiyn*kifgf*lyfr*vsyfvdse
rkfnsntiyqcfkv*sfsvyi*ni*qgvikrnfsiwf*rwfkfkriftfniipftk*nfk
dssffnsti*lffnipspisvikqptlyxxx
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13752-1 (Contig-U13752-1Q)
/CSM_Contig/Contig-U13752-1Q.Seq.d
         (455 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13752-1 (Contig-U13752-1Q) /CSM_Contig/Conti...   884  0.0
Contig-U04656-1 (Contig-U04656-1Q) /CSM_Contig/Conti...    36  0.031
Contig-U14691-1 (Contig-U14691-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U14463-1 (Contig-U14463-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U13429-1 (Contig-U13429-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U13105-1 (Contig-U13105-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U13064-1 (Contig-U13064-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U12415-1 (Contig-U12415-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U12176-1 (Contig-U12176-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U11428-1 (Contig-U11428-1Q) /CSM_Contig/Conti...    34  0.12

>Contig-U13752-1 (Contig-U13752-1Q) /CSM_Contig/Contig-U13752-1Q.Seq.d
          Length = 455

 Score =  884 bits (446), Expect = 0.0
 Identities = 446/446 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtacaacaacgtatataaatccagttggatatttatttgtaaaaaattcgaatgctaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggtacaacaacgtatataaatccagttggatatttatttgtaaaaaattcgaatgctaat 60

                                                                       
Query: 61  gtttatgtttattataatgaaactttgaggagttctattggttcaaacgatatatatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtttatgtttattataatgaaactttgaggagttctattggttcaaacgatatatatata 120

                                                                       
Query: 121 attgaaaaatttttggtttttaactatattttcgttgagtctcatattttgttgactccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attgaaaaatttttggtttttaactatattttcgttgagtctcatattttgttgactccg 180

                                                                       
Query: 181 aaaggaaatttaattctaacacaatttatcaatgtttcaaagtatgatctttcagtgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaaggaaatttaattctaacacaatttatcaatgtttcaaagtatgatctttcagtgtat 240

                                                                       
Query: 241 acatatgaaatatatgacaaggggttattaaaagaaacttttccatttggttttgaagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acatatgaaatatatgacaaggggttattaaaagaaacttttccatttggttttgaagat 300

                                                                       
Query: 301 ggttcaaatttaaaaggattttcactttcaatatcattccttttaccaaatgaaacttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggttcaaatttaaaaggattttcactttcaatatcattccttttaccaaatgaaacttca 360

                                                                       
Query: 361 aagactcgtcgtttttcaattcaaccatttaattattttttaacattccatctccaattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagactcgtcgtttttcaattcaaccatttaattattttttaacattccatctccaattt 420

                                     
Query: 421 ctgttataaaacaaccaacattatat 446
           ||||||||||||||||||||||||||
Sbjct: 421 ctgttataaaacaaccaacattatat 446


>Contig-U04656-1 (Contig-U04656-1Q) /CSM_Contig/Contig-U04656-1Q.Seq.d
          Length = 468

 Score = 36.2 bits (18), Expect = 0.031
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 29  gatatttatttgtaaaaa 46
           ||||||||||||||||||
Sbjct: 394 gatatttatttgtaaaaa 377


>Contig-U14691-1 (Contig-U14691-1Q) /CSM_Contig/Contig-U14691-1Q.Seq.d
          Length = 2424

 Score = 34.2 bits (17), Expect = 0.12
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 300  tggttcaaatttaaaag 316
            |||||||||||||||||
Sbjct: 2109 tggttcaaatttaaaag 2125


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,528
Number of Sequences: 6905
Number of extensions: 10528
Number of successful extensions: 1115
Number of sequences better than 10.0: 378
length of query: 455
length of database: 5,674,871
effective HSP length: 16
effective length of query: 439
effective length of database: 5,564,391
effective search space: 2442767649
effective search space used: 2442767649
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12.14
Homology vs DNA 
Query= Contig-U13752-1 (Contig-U13752-1Q) /CSM_Contig/Contig-U13752-1Q.Seq.d
         (455 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ425596) Dictyostelium discoideum cDNA clone:ddv56b09, 5' ...   884   0.0    1
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1...    40   0.005  8
(CP000361) Arcobacter butzleri RM4018, complete genome.            34   0.028  18
(CZ861003) OC__Ba0254G12.f OC__Ba Oryza coarctata genomic cl...    50   0.069  1
(CZ853876) OC__Ba0244F16.r OC__Ba Oryza coarctata genomic cl...    50   0.069  1
(CZ727752) OC__Ba0055H16.r OC__Ba Oryza coarctata genomic cl...    50   0.069  1
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2...    32   0.10   10
(AX344574) Sequence 25 from Patent WO0200932.                      40   0.15   9
(AC167428) Bos taurus clone CH240-207A20, WORKING DRAFT SEQU...    40   0.24   6
(DV788735) Hw_liver_19_050715_B02 Bos taurus CF-24-HW liver ...    48   0.27   1
(CX502215) JGI_XZG40086.rev NIH_XGC_tropGas7 Xenopus (Silura...    38   0.36   2
(AM462900) Vitis vinifera contig VV78X056435.6, whole genome...    42   0.39   3
(BH163408) ENTTH28TR Entamoeba histolytica Sheared DNA Entam...    30   0.42   3
(CX502216) JGI_XZG40086.fwd NIH_XGC_tropGas7 Xenopus (Silura...    38   0.42   2
(DN086147) JGI_CABE1072.rev NIH_XGC_tropOva1 Xenopus (Silura...    38   0.44   2
(CX447119) JGI_XZG22412.rev NIH_XGC_tropGas7 Xenopus (Silura...    38   0.45   2
(CX385287) JGI_XZT64834.rev NIH_XGC_tropTad5 Xenopus (Silura...    38   0.45   2
(BX692656) Xenopus tropicalis EST, clone TNeu107o04 3'.            38   0.49   2
(AC185672) Bos taurus clone RP42-179O2, WORKING DRAFT SEQUEN...    34   0.58   2
(AC224196) Bos taurus clone CH240-446N24, WORKING DRAFT SEQU...    34   0.58   2
(AC185698) Bos taurus clone RP42-211L10, WORKING DRAFT SEQUE...    34   0.59   2
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    32   0.72   9
(AC006278) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   0.77   5
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    34   0.80   7
(AC084267) Homo sapiens chromosome UNK clone RP11-230D4, WOR...    40   0.82   5
(BX255942) Zebrafish DNA sequence from clone DKEY-269K6 in l...    36   0.82   6
(EF154459) Romanomermis culicivorax mitochondrion, complete ...    34   0.86   5
(AC189437) Brassica rapa subsp. pekinensis clone KBrB069A23,...    38   0.87   5
(AC202586) Medicago truncatula clone mth2-33i12, WORKING DRA...    38   0.91   4
(AC099607) Mus musculus chromosome 5, clone RP23-361G20, com...    38   0.94   4
(AC068294) Mus musculus 3 BAC RP23-418O21 (Roswell Park Canc...    46   1.1    1
(AL035633) Human DNA sequence from clone RP5-1046G13 on chro...    46   1.1    1
(AC090249) Homo sapiens chromosome 18 clone RP11-879H3 map 1...    46   1.1    1
(AL357652) Human DNA sequence *** SEQUENCING CANCELLED *** f...    46   1.1    1
(AQ318187) RPCI11-98J17.TV RPCI-11 Homo sapiens genomic clon...    46   1.1    1
(CW604038) OA_ABa0143A20.f OA_ABa Oryza australiensis genomi...    46   1.1    1
(CR082569) Forward strand read from insert in 3'HPRT inserti...    46   1.1    1
(CR074581) Forward strand read from insert in 3'HPRT inserti...    46   1.1    1
(AC161313) Loxodonta africana clone VMRC15-315H9, WORKING DR...    40   1.2    4
(AX344569) Sequence 20 from Patent WO0200932.                      34   1.3    8
(BW215612) Ciona intestinalis cDNA, clone:cieg080g10, 5' end...    42   1.3    2
(AC129544) Mus musculus chromosome 12, clone RP23-258H6, com...    36   1.3    4
(AC104985) Homo sapiens chromosome 18, clone RP11-379L18, co...    34   1.3    6
(AL662826) Human DNA sequence from clone XXbac-101I20 on chr...    38   1.3    4
(BW038019) Ciona intestinalis cDNA, clone:cibd035h01, 5' end...    42   1.3    2
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8...    34   1.3    9
(BW034547) Ciona intestinalis cDNA, clone:cibd026d18, 5' end...    42   1.4    2
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    38   1.4    9
(BC077534) Xenopus laevis translocation protein 1, mRNA (cDN...    38   1.5    2
(AC195450) Glycine tomentella clone gtt1-310p22, complete se...    36   1.5    5
(EL711908) CBSU842.rev NICHD_XGC_tropLimb_m Xenopus (Siluran...    36   1.6    2
(AC141766) Apis mellifera clone CH224-60D6, WORKING DRAFT SE...    42   1.6    4
(EY245730) CATY4882.rev CATY Aspergillus niger fungal filame...    38   1.6    2
(BC166373) Xenopus tropicalis cDNA clone MGC:186394 IMAGE:76...    38   1.6    2
(CU302361) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   1.6    7
(BD460625) Diagnosis of Diseases Associated with Cell Cycle.       34   1.6    3
(BD452547) Diagnosis of Diseases Associated with Cell Cycle.       34   1.6    3
(AX348898) Sequence 356 from Patent WO0202807.                     34   1.6    3
(AX252161) Sequence 422 from Patent WO0168911.                     34   1.6    3
(DE267062) Oryzias latipes DNA, clone: ola1-157L18.F, genomi...    36   1.6    2
(AC179968) Strongylocentrotus purpuratus clone R3-3035O08, W...    44   1.7    3
(AC095366) Rattus norvegicus clone CH230-1J12, *** SEQUENCIN...    34   1.7    7
(AM466122) Vitis vinifera contig VV78X156573.4, whole genome...    42   1.8    2
(AC060230) Homo sapiens chromosome 10 clone RP11-428E24, WOR...    44   2.0    3
(AC178596) Strongylocentrotus purpuratus clone R3-3021P16, W...    44   2.0    2
(AC022651) Homo sapiens clone RP11-28H7, WORKING DRAFT SEQUE...    38   2.1    5
(AC134818) Homo sapiens chromosome 5 clone RP11-184G11, comp...    44   2.1    2
(AP001085) Homo sapiens genomic DNA, chromosome 11q clone:RP...    36   2.1    4
(AC206041) Pongo abelii BAC clone CH276-274D14 from chromoso...    34   2.1    2
(AE014844) Plasmodium falciparum 3D7 chromosome 12, section ...    34   2.1    7
(AM404181) Antedon mediterranea complete mitochondial genome.      36   2.3    4
(AJ294725) Astasia longa complete chloroplast genome.              36   2.3    5
(CU915251) Brassica rapa subsp. pekinensis clone KBrH019G05,...    36   2.4    5
(AM424734) Vitis vinifera contig VV78X103090.3, whole genome...    34   2.4    2
(AC230760) Bos taurus clone CH240-499H21, WORKING DRAFT SEQU...    38   2.4    4
(EA685370) Sequence 64249 from patent US 7365185.                  40   2.4    2
(AC230176) Bos taurus clone CH240-519A19, WORKING DRAFT SEQU...    44   2.6    4
(AC178581) Strongylocentrotus purpuratus clone R3-3022O16, W...    44   2.6    2
(AC007869) Genomic Sequence for Homo sapiens Clone 431C18 Fr...    42   2.8    3
(EK353634) 1095468265989 Global-Ocean-Sampling_GS-31-01-01-1...    34   2.8    2
(FH626571) CHO_OF4955xo04r1.ab1 CHO_OF4 Nicotiana tabacum ge...    32   2.8    2
(ET736734) CHO_OF186xj22f1.ab1 CHO_OF Nicotiana tabacum geno...    32   2.8    2
(EJ926188) 1093018782705 Global-Ocean-Sampling_GS-30-02-01-1...    34   2.8    2
(EJ840205) 1093017825233 Global-Ocean-Sampling_GS-30-02-01-1...    34   2.8    2
(ET773356) CHO_OF566xd05r1.ab1 CHO_OF Nicotiana tabacum geno...    32   2.9    2
(CB901353) tric026xe12 T.reesei mycelial culture, Version 3 ...    32   2.9    2
(CF871138) tric026xe12.b1 T.reesei mycelial culture, Version...    32   2.9    2
(ET736803) CHO_OF186xj24r1.ab1 CHO_OF Nicotiana tabacum geno...    32   2.9    2
(CU481231) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   3.0    4
(AC158376) Medicago truncatula chromosome 2 clone mth2-64d17...    38   3.0    4
(CT009540) M.truncatula DNA sequence from clone MTH2-39B3 on...    36   3.1    4
(CU914610) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   3.2    3
(CR382398) Plasmodium falciparum chromosome 6, complete sequ...    32   3.3    9
(AL035476) Plasmodium falciparum MAL4P3.                           34   3.3    9
(AC004115) Drosophila melanogaster (P1 DS02374 (D136)) DNA s...    38   3.3    4
(CU467751) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   3.4    4
(AX344550) Sequence 1 from Patent WO0200932.                       32   3.6    8
(AC189189) Brassica rapa subsp. pekinensis clone KBrB002E24,...    36   3.6    5
(AC216607) Cavia porcellus clone CH234-45N18, WORKING DRAFT ...    34   3.7    4
(AE017245) Mycoplasma synoviae 53, complete genome.                34   3.7    12

>(BJ425596) Dictyostelium discoideum cDNA clone:ddv56b09, 5' end,
           single read.
          Length = 446

 Score =  884 bits (446), Expect = 0.0
 Identities = 446/446 (100%)
 Strand = Plus / Plus


Query: 1   ggtacaacaacgtatataaatccagttggatatttatttgtaaaaaattcgaatgctaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggtacaacaacgtatataaatccagttggatatttatttgtaaaaaattcgaatgctaat 60


Query: 61  gtttatgtttattataatgaaactttgaggagttctattggttcaaacgatatatatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtttatgtttattataatgaaactttgaggagttctattggttcaaacgatatatatata 120


Query: 121 attgaaaaatttttggtttttaactatattttcgttgagtctcatattttgttgactccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attgaaaaatttttggtttttaactatattttcgttgagtctcatattttgttgactccg 180


Query: 181 aaaggaaatttaattctaacacaatttatcaatgtttcaaagtatgatctttcagtgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaaggaaatttaattctaacacaatttatcaatgtttcaaagtatgatctttcagtgtat 240


Query: 241 acatatgaaatatatgacaaggggttattaaaagaaacttttccatttggttttgaagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acatatgaaatatatgacaaggggttattaaaagaaacttttccatttggttttgaagat 300


Query: 301 ggttcaaatttaaaaggattttcactttcaatatcattccttttaccaaatgaaacttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggttcaaatttaaaaggattttcactttcaatatcattccttttaccaaatgaaacttca 360


Query: 361 aagactcgtcgtttttcaattcaaccatttaattattttttaacattccatctccaattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagactcgtcgtttttcaattcaaccatttaattattttttaacattccatctccaattt 420


Query: 421 ctgttataaaacaaccaacattatat 446
           ||||||||||||||||||||||||||
Sbjct: 421 ctgttataaaacaaccaacattatat 446

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 741,239,954
Number of extensions: 77515490
Number of successful extensions: 4469630
Number of sequences better than 10.0: 209
Length of query: 455
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 432
Effective length of database: 93,106,754,628
Effective search space: 40222117999296
Effective search space used: 40222117999296
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7. 8
Homology vs Protein 
Query= Contig-U13752-1 (Contig-U13752-1Q) /CSM_Contig/Contig-U13752-1Q.Seq.d
         (455 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116957_18(AC116957|pid:none) Dictyostelium discoideum chromoso...    39   0.074
AC115680_4(AC115680|pid:none) Dictyostelium discoideum chromosom...    38   0.13
AC116984_134(AC116984|pid:none) Dictyostelium discoideum chromos...    35   0.63
AC117075_93(AC117075|pid:none) Dictyostelium discoideum chromoso...    34   1.4
CP001287_2543(CP001287|pid:none) Cyanothece sp. PCC 8801, comple...    34   1.8
AC116984_63(AC116984|pid:none) Dictyostelium discoideum chromoso...    33   2.4
EU404108_4(EU404108|pid:none) Campylobacter jejuni strain RM3415...    33   2.4
AF400669_7(AF400669|pid:none) Campylobacter jejuni strain LIO87 ...    33   2.4
EU404107_5(EU404107|pid:none) Campylobacter jejuni strain RM1850...    33   2.4
AL844504_308(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    33   3.1
BA000016_484(BA000016|pid:none) Clostridium perfringens str. 13 ...    33   3.1
U87145_10(U87145|pid:none) Toxoplasma gondii chloroplast, comple...    33   3.1
CP000348_637(CP000348|pid:none) Leptospira borgpetersenii serova...    33   4.1
AJ617332_3(AJ617332|pid:none) Debaryomyces robertsiae plasmid pW...    33   4.1
CP000644_2757(CP000644|pid:none) Aeromonas salmonicida subsp. sa...    32   6.9
AM910993_257(AM910993|pid:none) Plasmodium knowlesi strain H chr...    32   9.1
AE014185_317(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    32   9.1

>AC116957_18(AC116957|pid:none) Dictyostelium discoideum chromosome
           2 map 1685067-2090751 strain AX4, complete sequence.
          Length = 1414

 Score = 38.5 bits (88), Expect = 0.074
 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +1

Query: 160 SHILLTPKGNLILTQFINVSKYDLSVYTYE-IYDKGLLKET--FPFGFEDGSNLKGFSLS 330
           S   +T   N++ T F +        Y YE IY K     T  FPFGF+ G+NL GF+ S
Sbjct: 331 SRYFVTQDRNIVNTGFSS------GPYNYEPIYLKYQTLRTYRFPFGFKIGNNLNGFNYS 384

Query: 331 ISFLLPNETSKTRRFSI 381
           +SFL+         FS+
Sbjct: 385 MSFLIAKNDPLMGTFSV 401

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 734,099,514
Number of extensions: 15221918
Number of successful extensions: 33957
Number of sequences better than 10.0: 17
Number of HSP's gapped: 33939
Number of HSP's successfully gapped: 17
Length of query: 151
Length of database: 1,051,180,864
Length adjustment: 113
Effective length of query: 38
Effective length of database: 685,449,697
Effective search space: 26047088486
Effective search space used: 26047088486
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.83  gvh: 0.33  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for Contig-U13752-1 is cyt
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0