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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13747-1
Contig ID Contig-U13747-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13747-1 (Contig-U13747-1Q) /CSM_Contig/Contig-U13747-1Q.Seq.d
TTTCATATTGGTTTCATTGATACAGTATTAAAAATTTTAAGATGTGTTTG
TTATCATTGTTCAAAATTATTAACGGATACAAATGAACACTCATTTAGAC
AAGCATTAAAAATTAGAAATCAAAAACATAGATTAAATGCAGTAGTAGAT
TGTTGTAAAAACAAAAAAGTATGTGCAATTGGAGGAGAAGAAGAGGGAGA
ACATGATTTATCAAAAACCGATGAAGAATTGGATAAACCAGTTAAACATG
GTGGATGTGGTAATGTTTTACCAAAGATAACAAAAGAAGATTTAAAGATT
ATAGTAGAGTTTAAAGATGTAACCGATGAAAGTATTGAAAAGAAATCGGT
ACTATCGGCAGAACGTGTTTTAAATATTTTAAAGAGAATTAAAGATGAAG
ATTCGCGTGCAATGGGTATTAACCCAGATTGGGCAAGAGCAGATTGGATG
ATTGCAACAGTATTACCAGTACCACCACCACCAGTTAGACCATCGATTAT
GATGGATACCTCAACGAGGGGTGAGGATGATTTAACACATAAATTAGCCG
ATATTGTAAAGGCAAATAGAGAATTACAACGTCAAGAAAAGAATGGTGCA
CCAGCACATATCATTGCAGANNNNNNNNN
Gap no gap
Contig length 629
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 1752394
End point 1753000
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U13747
List of clone(s) 

est1=VHM557F,1,620
Translated Amino Acid sequence 
FHIGFIDTVLKILRCVCYHCSKLLTDTNEHSFRQALKIRNQKHRLNAVVDCCKNKKVCAI
GGEEEGEHDLSKTDEELDKPVKHGGCGNVLPKITKEDLKIIVEFKDVTDESIEKKSVLSA
ERVLNILKRIKDEDSRAMGINPDWARADWMIATVLPVPPPPVRPSIMMDTSTRGEDDLTH
KLADIVKANRELQRQEKNGAPAHIIAXXX
Translated Amino Acid sequence (All Frames) 
Frame A:
FHIGFIDTVLKILRCVCYHCSKLLTDTNEHSFRQALKIRNQKHRLNAVVDCCKNKKVCAI
GGEEEGEHDLSKTDEELDKPVKHGGCGNVLPKITKEDLKIIVEFKDVTDESIEKKSVLSA
ERVLNILKRIKDEDSRAMGINPDWARADWMIATVLPVPPPPVRPSIMMDTSTRGEDDLTH
KLADIVKANRELQRQEKNGAPAHIIAXXX


Frame B:
filvsliqy*kf*dvfviivqny*riqmnthldkh*kleiknid*mq**ivvktkkyvql
eekkrenmiyqkpmknwinqlnmvdvvmfyqr*qkki*rl**slkm*pmkvlkrnryyrq
nvf*if*relkmkirvqwvltqigqeqig*lqqyyqyhhhqldhrl*wipqrgvrmi*hi
n*pil*rqienynvkkrmvhqhislqxxx


Frame C:
sywfh*ysiknfkmcllslfkiingyk*tli*tsikn*kskt*ikcssrll*kqksmcnw
rrrrgrt*fiknr*rig*ts*twwmw*cftkdnkrrfkdysrv*rcnr*ky*keigtigr
tcfkyfken*r*rfacngy*prlgksrlddcnsitstttts*tidydgylneg*g*fnt*
isryckgk*rittsrkewctstyhcrxxx
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13747-1 (Contig-U13747-1Q)
/CSM_Contig/Contig-U13747-1Q.Seq.d
         (629 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13747-1 (Contig-U13747-1Q) /CSM_Contig/Conti...  1158  0.0
Contig-U03801-1 (Contig-U03801-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U11361-1 (Contig-U11361-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U11031-1 (Contig-U11031-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U09285-1 (Contig-U09285-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U13900-1 (Contig-U13900-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U13531-1 (Contig-U13531-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U12784-1 (Contig-U12784-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U11146-1 (Contig-U11146-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U03464-1 (Contig-U03464-1Q) /CSM_Contig/Conti...    36  0.044

>Contig-U13747-1 (Contig-U13747-1Q) /CSM_Contig/Contig-U13747-1Q.Seq.d
          Length = 629

 Score = 1158 bits (584), Expect = 0.0
 Identities = 608/620 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcatattggtttcattgatacagtattaaaaattttaagatgtgtttgttatcattgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tttcatattggtttcattgatacagtattaaaaattttaagatgtgtttgttatcattgt 60

                                                                       
Query: 61  tcaaaattattaacggatacaaatgaacactcatttagacaagcattaaaaattagaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcaaaattattaacggatacaaatgaacactcatttagacaagcattaaaaattagaaat 120

                                                                       
Query: 121 caaaaacatagattaaatgcagtagtagattgttgtnnnnnnnnnnnngtatgtgcaatt 180
           ||||||||||||||||||||||||||||||||||||            ||||||||||||
Sbjct: 121 caaaaacatagattaaatgcagtagtagattgttgtaaaaacaaaaaagtatgtgcaatt 180

                                                                       
Query: 181 ggaggagaagaagagggagaacatgatttatcaaaaaccgatgaagaattggataaacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggaggagaagaagagggagaacatgatttatcaaaaaccgatgaagaattggataaacca 240

                                                                       
Query: 241 gttaaacatggtggatgtggtaatgttttaccaaagataacaaaagaagatttaaagatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gttaaacatggtggatgtggtaatgttttaccaaagataacaaaagaagatttaaagatt 300

                                                                       
Query: 301 atagtagagtttaaagatgtaaccgatgaaagtattgaaaagaaatcggtactatcggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atagtagagtttaaagatgtaaccgatgaaagtattgaaaagaaatcggtactatcggca 360

                                                                       
Query: 361 gaacgtgttttaaatattttaaagagaattaaagatgaagattcgcgtgcaatgggtatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaacgtgttttaaatattttaaagagaattaaagatgaagattcgcgtgcaatgggtatt 420

                                                                       
Query: 421 aacccagattgggcaagagcagattggatgattgcaacagtattaccagtaccaccacca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aacccagattgggcaagagcagattggatgattgcaacagtattaccagtaccaccacca 480

                                                                       
Query: 481 ccagttagaccatcgattatgatggatacctcaacgaggggtgaggatgatttaacacat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccagttagaccatcgattatgatggatacctcaacgaggggtgaggatgatttaacacat 540

                                                                       
Query: 541 aaattagccgatattgtaaaggcaaatagagaattacaacgtcaagaaaagaatggtgca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaattagccgatattgtaaaggcaaatagagaattacaacgtcaagaaaagaatggtgca 600

                               
Query: 601 ccagcacatatcattgcaga 620
           ||||||||||||||||||||
Sbjct: 601 ccagcacatatcattgcaga 620


>Contig-U03801-1 (Contig-U03801-1Q) /CSM_Contig/Contig-U03801-1Q.Seq.d
          Length = 1008

 Score = 42.1 bits (21), Expect = 7e-04
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 461 tattaccagtaccaccaccaccagt 485
           |||| ||||||||||||||||||||
Sbjct: 703 tatttccagtaccaccaccaccagt 679


>Contig-U11361-1 (Contig-U11361-1Q) /CSM_Contig/Contig-U11361-1Q.Seq.d
          Length = 2552

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 463  ttaccagtaccaccaccaccagtt 486
            |||||||||||||||||| |||||
Sbjct: 2434 ttaccagtaccaccaccagcagtt 2411


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,054
Number of Sequences: 6905
Number of extensions: 10054
Number of successful extensions: 1567
Number of sequences better than 10.0: 166
length of query: 629
length of database: 5,674,871
effective HSP length: 16
effective length of query: 613
effective length of database: 5,564,391
effective search space: 3410971683
effective search space used: 3410971683
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.13
Homology vs DNA 
Query= Contig-U13747-1 (Contig-U13747-1Q) /CSM_Contig/Contig-U13747-1Q.Seq.d
         (629 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ425675) Dictyostelium discoideum cDNA clone:ddv56a15, 5' ...   896   0.0    2
(AF058710) Dictyostelium discoideum RNA polymerase II larges...   880   0.0    2
(EF059798) Miliolidae sp. DL-2007 RNA polymerase II largest ...    52   2e-06  3
(EF599444) Torulaspora delbrueckii strain CBS 133 RNA polyme...    54   2e-06  2
(AY497705) Candida glabrata strain CBS 138 RNA polymerase II...    36   5e-06  3
(EF158853) Trapeliopsis percrenata RNA polymerase II largest...    42   0.001  2
(CR380955) Candida glabrata strain CBS138 chromosome I compl...    36   0.004  2
(AY497731) Candida tropicalis strain CBS 94 RNA polymerase I...    36   0.005  2
(EF599405) Candida tropicalis strain DUMC 29-3711 RNA polyme...    36   0.005  2
(AY497714) Candida viswanathii strain CBS 4024 RNA polymeras...    38   0.020  2
(CL646138) CH213-109C21.T7 CH213 Gasterosteus aculeatus geno...    52   0.024  1
(EF059796) Bathysiphon flexilis RNA polymerase II largest su...    40   0.028  2
(AY497706) Pichia jadinii strain CBS 1600 RNA polymerase II ...    42   0.044  2
(AY497702) Candida parapsilosis strain ATCC 96144 RNA polyme...    42   0.046  2
(AY497710) Debaryomyces etchellsii strain CBS 2011 RNA polym...    38   0.047  2
(FI084502) CHO_OF7736xf23r1.ab1 CHO_OF7 Nicotiana tabacum ge...    34   0.067  3
(FH025377) CHO_OF3250xa19r1.ab1 CHO_OF3 Nicotiana tabacum ge...    34   0.080  3
(Z98551) Plasmodium falciparum MAL3P6.                             50   0.097  1
(X16561) Plasmodium falciparum DNA for RNA polymerase II lar...    50   0.097  1
(EK183989) 1095458136129 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.097  1
(AU086093) Plasmodium falciparum 3D7 cDNA clone from Sugano ...    50   0.097  1
(AC194516) Callicebus moloch clone LB5-258J7, WORKING DRAFT ...    34   0.20   6
(DQ294589) Basidiobolus ranarum isolate AFTOL-ID 301 RNA pol...    48   0.22   2
(AY653536) Candida maltosa RNA polymerase subunit II-1 gene,...    38   0.29   2
(AY497715) Candida norvegica strain CBS 4239 RNA polymerase ...    38   0.29   2
(ER504310) 1093015415889 Global-Ocean-Sampling_GS-35-01-01-1...    48   0.38   1
(ER410357) 1095368028173 Global-Ocean-Sampling_GS-34-01-01-1...    48   0.38   1
(BB975803) Plasmodium berghei strain ANKA cDNA clone:OK00565...    48   0.38   1
(AC095949) Rattus norvegicus clone CH230-11A20, WORKING DRAF...    38   0.41   4
(AC133502) Mus musculus chromosome 7 clone RP24-290G20, comp...    42   0.54   2
(AC096786) Rattus norvegicus clone CH230-4K22, WORKING DRAFT...    44   0.54   5
(CT391626) Sus scrofa genomic clone PigE-47L22, genomic surv...    34   0.64   3
(DQ870955) Megaspora verrucosa RNA polymerase II largest sub...    38   0.69   2
(DQ870933) Aspicilia hispida RNA polymerase II largest subun...    36   0.69   2
(AC125694) Rattus norvegicus clone CH230-137O22, WORKING DRA...    34   0.93   5
(AY490551) Taxus canadensis RNA polymerase II large subunit ...    36   0.99   2
(AY497716) Candida castellii strain CBS 4332 RNA polymerase ...    34   1.1    2
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    36   1.1    7
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    36   1.2    7
(AC099141) Rattus norvegicus clone CH230-51N2, *** SEQUENCIN...    38   1.4    5
(EF463015) Chamaedorea elegans clone 15H12 microsatellite se...    46   1.5    1
(EF014373) Issatchenkia orientalis RNA polymerase II largest...    46   1.5    1
(AY497720) Issatchenkia orientalis strain CBS 573 RNA polyme...    46   1.5    1
(AM438155) Vitis vinifera contig VV78X228305.7, whole genome...    46   1.5    1
(Z99281) Caenorhabditis elegans YAC Y57G11C.                       46   1.5    1
(AC022142) Homo sapiens chromosome 5 clone CTD-2341D24, comp...    46   1.5    1
(AC016567) Homo sapiens chromosome 5 clone CTC-564E20, compl...    46   1.5    1
(AC008653) Homo sapiens chromosome 5 clone CTB-18M1, complet...    46   1.5    1
(AC008377) Homo sapiens chromosome 5 clone CTC-208O22, compl...    46   1.5    1
(AC034212) Homo sapiens chromosome 5 clone CTC-573J1, WORKIN...    46   1.5    1
(AC008815) Homo sapiens chromosome 5 clone CTD-2120O4, WORKI...    46   1.5    1
(EJ484160) 1095403487658 Global-Ocean-Sampling_GS-28-01-01-1...    46   1.5    1
(EJ369489) 1092963718365 Global-Ocean-Sampling_GS-28-01-01-1...    46   1.5    1
(FK906348) EST_lsal_evj_951550 lsalevj mixed_tissue_mixed_st...    46   1.5    1
(FG480797) 020324KANA001044HT (KANA) Actinidia setosa stem A...    46   1.5    1
(AB022220) Arabidopsis thaliana genomic DNA, chromosome 3, P...    40   1.7    3
(EF599438) Pichia anomala strain CBS 605 RNA polymerase II l...    42   2.3    2
(AC188341) Aotus nancymaae clone CH258-376L1, WORKING DRAFT ...    38   2.3    4
(AY497729) Debaryomyces hansenii strain CBS 767 RNA polymera...    40   2.4    2
(AC102333) Mus musculus chromosome 18, clone RP24-542P12, co...    42   2.5    4
(DU215891) 1098553485623 CHORI-243 Ovis aries genomic clone ...    40   2.7    2
(FH140090) CHO_OF3693xk06f1.ab1 CHO_OF3 Nicotiana tabacum ge...    40   3.0    2
(AC135948) Rattus norvegicus clone CH230-218P13, *** SEQUENC...    40   3.1    3
(EJ268695) 1095351035509 Global-Ocean-Sampling_GS-27-01-01-1...    38   3.2    2
(CZ541391) SRAA-aad37g04.g1 Strongyloides ratti whole genome...    42   3.3    2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    40   3.8    10
(ER481564) 1093015265661 Global-Ocean-Sampling_GS-35-01-01-1...    34   3.9    2
(ER572886) 1093015800247 Global-Ocean-Sampling_GS-36-01-01-2...    34   3.9    2
(ER421734) 1092963710702 Global-Ocean-Sampling_GS-35-01-01-1...    34   3.9    2
(AC108550) Rattus norvegicus  BAC CH230-194A5 () complete se...    34   4.5    6
(AC184628) Strongylocentrotus purpuratus clone R3-1032B22, W...    40   5.4    3
(AC117144) Rattus norvegicus clone CH230-308I9, *** SEQUENCI...    44   5.4    5
(AC147631) Mus musculus BAC clone RP23-341H6 from 9, complet...    38   5.4    3
(AL590625) Mouse DNA sequence from clone RP23-467M8 on chrom...    44   6.0    1
(AC118545) Mus musculus strain C57BL/6J clone rp23-324o14 ma...    44   6.0    1
(AC091777) Mus musculus strain C57BL/6J chromosome 17 clone ...    44   6.0    1
(EF014383) Glomus mosseae RNA polymerase II largest subunit ...    44   6.0    1
(DQ294592) Glomus mosseae isolate AFTOL-ID 139 RNA polymeras...    44   6.0    1
(AP008210) Oryza sativa (japonica cultivar-group) genomic DN...    44   6.0    1
(AM284978) Glomus geosporum partial RPB1 pseudogene for RNA ...    44   6.0    1
(AM284977) Glomus geosporum partial RPB1 pseodogene for RNA ...    44   6.0    1
(AM284976) Glomus mosseae partial RPB1 pseodogene for RNA po...    44   6.0    1
(AM284975) Glomus mosseae partial RPB1 gene for RNA polymera...    44   6.0    1
(EA703227) Sequence 82106 from patent US 7365185.                  44   6.0    1
(AC095035) Homo sapiens chromosome 1 clone RP11-159J16, comp...    44   6.0    1
(AC156821) Bos taurus clone CH240-60M1, WORKING DRAFT SEQUEN...    44   6.0    1
(AC127626) Rattus norvegicus clone CH230-452C12, WORKING DRA...    44   6.0    1
(AC115567) Rattus norvegicus clone CH230-48H8, WORKING DRAFT...    44   6.0    1
(AC106525) Rattus norvegicus clone CH230-25P5, WORKING DRAFT...    44   6.0    1
(AC098445) Rattus norvegicus clone CH230-1M14, WORKING DRAFT...    44   6.0    1
(CU582806) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.0    1
(AL731640) Oryza sativa genomic DNA, chromosome 4, BAC clone...    44   6.0    1
(AC218371) Bos taurus clone CH240-285K15, WORKING DRAFT SEQU...    44   6.0    1
(AC170553) Bos taurus clone CH240-225B2, WORKING DRAFT SEQUE...    44   6.0    1
(ER453584) 1092963859366 Global-Ocean-Sampling_GS-35-01-01-1...    44   6.0    1
(EK348591) 1095467613677 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.0    1
(EK290425) 1095462328318 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.0    1
(AQ124818) HS_2270_A1_C10_MF CIT Approved Human Genomic Sper...    44   6.0    1
(AM642184) Entamoeba dispar GSS, clone dispar92a01.q1k.            44   6.0    1
(EJ512512) 1095407110199 Global-Ocean-Sampling_GS-28-01-01-1...    44   6.0    1

>(BJ425675) Dictyostelium discoideum cDNA clone:ddv56a15, 5' end,
           single read.
          Length = 620

 Score =  896 bits (452), Expect(2) = 0.0
 Identities = 452/452 (100%)
 Strand = Plus / Plus


Query: 169 gtatgtgcaattggaggagaagaagagggagaacatgatttatcaaaaaccgatgaagaa 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 gtatgtgcaattggaggagaagaagagggagaacatgatttatcaaaaaccgatgaagaa 228


Query: 229 ttggataaaccagttaaacatggtggatgtggtaatgttttaccaaagataacaaaagaa 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 ttggataaaccagttaaacatggtggatgtggtaatgttttaccaaagataacaaaagaa 288


Query: 289 gatttaaagattatagtagagtttaaagatgtaaccgatgaaagtattgaaaagaaatcg 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gatttaaagattatagtagagtttaaagatgtaaccgatgaaagtattgaaaagaaatcg 348


Query: 349 gtactatcggcagaacgtgttttaaatattttaaagagaattaaagatgaagattcgcgt 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gtactatcggcagaacgtgttttaaatattttaaagagaattaaagatgaagattcgcgt 408


Query: 409 gcaatgggtattaacccagattgggcaagagcagattggatgattgcaacagtattacca 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gcaatgggtattaacccagattgggcaagagcagattggatgattgcaacagtattacca 468


Query: 469 gtaccaccaccaccagttagaccatcgattatgatggatacctcaacgaggggtgaggat 528
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gtaccaccaccaccagttagaccatcgattatgatggatacctcaacgaggggtgaggat 528


Query: 529 gatttaacacataaattagccgatattgtaaaggcaaatagagaattacaacgtcaagaa 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gatttaacacataaattagccgatattgtaaaggcaaatagagaattacaacgtcaagaa 588


Query: 589 aagaatggtgcaccagcacatatcattgcaga 620
           ||||||||||||||||||||||||||||||||
Sbjct: 589 aagaatggtgcaccagcacatatcattgcaga 620

 Score =  206 bits (104), Expect(2) = 0.0
 Identities = 104/104 (100%)
 Strand = Plus / Plus


Query: 1   tttcatattggtttcattgatacagtattaaaaattttaagatgtgtttgttatcattgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tttcatattggtttcattgatacagtattaaaaattttaagatgtgtttgttatcattgt 60


Query: 61  tcaaaattattaacggatacaaatgaacactcatttagacaagc 104
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcaaaattattaacggatacaaatgaacactcatttagacaagc 104

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 679,471,344
Number of extensions: 43922032
Number of successful extensions: 4604010
Number of sequences better than 10.0: 142
Length of query: 629
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 606
Effective length of database: 93,106,754,628
Effective search space: 56422693304568
Effective search space used: 56422693304568
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 8
Homology vs Protein 
Query= Contig-U13747-1 (Contig-U13747-1Q) /CSM_Contig/Contig-U13747-1Q.Seq.d
         (629 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF058710_1(AF058710|pid:none) Dictyostelium discoideum RNA polym...   388   e-107
DQ020658_1(DQ020658|pid:none) Glaucocystis nostochinearum RNA po...   238   8e-62
DQ223185_1(DQ223185|pid:none) Glaucocystis nostochinearum strain...   236   4e-61
AF519538_1(AF519538|pid:none) Zea mays RNA polymerase II largest...   222   6e-57
AF519541_1(AF519541|pid:none) Amborella trichopoda RNA polymeras...   221   1e-56
AF519535_1(AF519535|pid:none) Cycas revoluta RNA polymerase II l...   219   5e-56
AF519540_1(AF519540|pid:none) Nymphaea odorata RNA polymerase II...   219   7e-56
AF519539_1(AF519539|pid:none) Magnolia x soulangeana RNA polymer...   218   9e-56
AF519537_1(AF519537|pid:none) Welwitschia mirabilis RNA polymera...   218   9e-56
AF519542_1(AF519542|pid:none) Psilotum nudum RNA polymerase II l...   216   3e-55
EU543192_1(EU543192|pid:none) Saruma henryi RNA polymerase II la...   215   7e-55
EU543186_1(EU543186|pid:none) Illicium parviflorum RNA polymeras...   215   7e-55
EU543184_1(EU543184|pid:none) Ceratophyllum demersum RNA polymer...   215   1e-54
AY490554_1(AY490554|pid:none) Ephedra viridis RNA polymerase II ...   214   2e-54
EU543189_1(EU543189|pid:none) Papaver orientale RNA polymerase I...   211   2e-53
AY490552_1(AY490552|pid:none) Podocarpus macrophyllus RNA polyme...   209   4e-53
AP008211_298(AP008211|pid:none) Oryza sativa (japonica cultivar-...   209   4e-53
EU543183_1(EU543183|pid:none) Beta vulgaris RNA polymerase II la...   209   5e-53
AY490550_1(AY490550|pid:none) Thuja occidentalis RNA polymerase ...   209   7e-53
AY490551_1(AY490551|pid:none) Taxus canadensis RNA polymerase II...   208   9e-53
EU543182_1(EU543182|pid:none) Asparagus officinalis RNA polymera...   205   1e-51
EU543188_1(EU543188|pid:none) Nicotiana tabacum RNA polymerase I...   204   1e-51
X52954_1(X52954|pid:none) Arabidopsis thaliana rpII gene for RNA...   195   8e-49
JDMU1(T04690;S12071;S27346;S11960)DNA-directed RNA polymerase (E...   195   8e-49
DQ223187_1(DQ223187|pid:none) Cyanophora paradoxa strain CCAC 00...   189   6e-47
X52494_1(X52494|pid:none) Arabidopsis thaliana RPB1 gene for the...   187   2e-46
I38186(I38186) RNA polymerase II largest subunit - human  &X7487...   183   3e-45
A28490(A28490;A23566) DNA-directed RNA polymerase (EC 2.7.7.6) I...   183   3e-45
(P24928) RecName: Full=DNA-directed RNA polymerase II subunit RP...   183   3e-45
AK170834_1(AK170834|pid:none) Mus musculus NOD-derived CD11c +ve...   183   3e-45
U37500_1(U37500|pid:none) Mus musculus RNA polymerase II largest...   183   3e-45
(P08775) RecName: Full=DNA-directed RNA polymerase II subunit RP...   183   3e-45
D87293_1(D87293|pid:none) Cricetulus griseus mRNA for RNA polyme...   183   3e-45
U10334_1(U10334|pid:none) Crassostrea gigas RNA polymerase II la...   183   4e-45
U10331_1(U10331|pid:none) Artemia salina RNA polymerase II, larg...   174   2e-42
EU344090_1(EU344090|pid:none) Candida blankii strain MUCL 29842 ...   173   3e-42
M11798_1(M11798|pid:none) Drosophila melanogaster RNA polymerase...   170   4e-41
BT031343_1(BT031343|pid:none) Drosophila melanogaster RE30267 fu...   170   4e-41
DQ294589_1(DQ294589|pid:none) Basidiobolus ranarum isolate AFTOL...   168   1e-40
Y18879_1(Y18879|pid:none) Drosophila pseudoobscura RpII215 gene.      168   1e-40
AB095187_1(AB095187|pid:none) Cyanidioschyzon merolae gene for D...   167   3e-40
AY497699_1(AY497699|pid:none) Eremothecium gossypii strain ATCC ...   166   5e-40
EF599444_1(EF599444|pid:none) Torulaspora delbrueckii strain CBS...   165   9e-40
EU344081_1(EU344081|pid:none) Blastobotrys proliferans strain WM...   165   1e-39
EF599445_1(EF599445|pid:none) Zygoascus hellenicus strain CBS 58...   165   1e-39
CR382129_619(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...   164   1e-39
AY497721_1(AY497721|pid:none) Yarrowia lipolytica strain CBS 599...   164   1e-39
EU344074_1(EU344074|pid:none) Candida galli strain WM 07.4 RNA p...   164   1e-39
EU344088_1(EU344088|pid:none) Blastobotrys nivea strain WM 07.17...   162   6e-39
CU928180_82(CU928180|pid:none) Kluyveromyces thermotolerans stra...   162   6e-39
FN357485_10(FN357485|pid:none) Schistosoma mansoni genome sequen...   162   7e-39
DQ294578_1(DQ294578|pid:none) Allomyces arbuscula isolate AFTOL-...   162   7e-39
EU344125_1(EU344125|pid:none) Candida salmanticensis strain MUCL...   161   1e-38
DQ294595_1(DQ294595|pid:none) Mortierella verticillata isolate A...   161   2e-38
(P36594) RecName: Full=DNA-directed RNA polymerase II subunit rp...   160   2e-38
CR380955_154(CR380955|pid:none) Candida glabrata strain CBS138 c...   160   2e-38
AY497705_1(AY497705|pid:none) Candida glabrata strain CBS 138 RN...   160   2e-38
AY497716_1(AY497716|pid:none) Candida castellii strain CBS 4332 ...   160   3e-38
EU344080_1(EU344080|pid:none) Arxula adeninivorans strain CBS 82...   160   3e-38
AY497713_1(AY497713|pid:none) Lachancea kluyveri strain CBS 3082...   160   4e-38
EU344150_1(EU344150|pid:none) Wickerhamia fluorescens strain WM ...   159   8e-38
EF599439_1(EF599439|pid:none) Kazachstania telluris strain CBS 2...   158   1e-37
EF599441_1(EF599441|pid:none) Kazachstania slooffiae strain CBS ...   158   1e-37
DQ294586_1(DQ294586|pid:none) Spizellomyces punctatus isolate AF...   158   1e-37
AY497731_1(AY497731|pid:none) Candida tropicalis strain CBS 94 R...   157   3e-37
EU344118_1(EU344118|pid:none) Candida membranifaciens strain MUC...   156   4e-37
DQ294580_1(DQ294580|pid:none) Physoderma maydis isolate AFTOL-ID...   156   4e-37
DQ294606_1(DQ294606|pid:none) Orphella haysii isolate AFTOL-ID 1...   156   4e-37
EU344114_1(EU344114|pid:none) Candida kruisii strain WM 07.46 RN...   155   7e-37
(P35074) RecName: Full=DNA-directed RNA polymerase II subunit RP...   155   7e-37
EF599419_1(EF599419|pid:none) Candida carpophila strain CBS 5975...   155   7e-37
FN392321_582(FN392321|pid:none) Pichia pastoris GS115 chromosome...   155   7e-37
EU344100_1(EU344100|pid:none) Candida ernobii strain WM 07.31 RN...   155   7e-37
CR382126_220(CR382126|pid:none) Kluyveromyces lactis strain NRRL...   155   9e-37
AJ581697_1(AJ581697|pid:none) Reticulomyxa filosa partial RPB1 g...   155   9e-37
DQ294596_1(DQ294596|pid:none) Rhopalomyces elegans isolate AFTOL...   155   1e-36
AF315820_1(AF315820|pid:none) Glaucosphaera vacuolata DNA-depend...   154   2e-36
(A5DCV3) RecName: Full=DNA-directed RNA polymerase II subunit RP...   154   2e-36
EU344144_1(EU344144|pid:none) Pichia nakazawae var. nakazawae st...   154   2e-36
EU344075_1(EU344075|pid:none) Pichia scolyti strain CBS 4802 RNA...   154   2e-36
FM992695_931(FM992695|pid:none) Candida dubliniensis CD36 chromo...   154   2e-36
EF059798_1(EF059798|pid:none) Miliolidae sp. DL-2007 RNA polymer...   154   2e-36
EU344136_1(EU344136|pid:none) Candida tanzawaensis strain WM 07....   153   4e-36
AY497708_1(AY497708|pid:none) Candida albicans strain CBS 1905 R...   153   4e-36
A34092(A34092) DNA-directed RNA polymerase (EC 2.7.7.6) II large...   153   4e-36
EU344115_1(EU344115|pid:none) Candida kruisii strain WM 07.47 RN...   152   6e-36
AF395110_1(AF395110|pid:none) Naegleria gruberi RNA polymerase I...   152   6e-36
EU344134_1(EU344134|pid:none) Candida sorboxylosa strain MUCL 41...   152   8e-36
EU344143_1(EU344143|pid:none) Pichia acaciae strain WM 07.78 RNA...   152   8e-36
EU344110_1(EU344110|pid:none) Candida insectalens strain WM 07.4...   152   8e-36
EU186063_1(EU186063|pid:none) Botryosphaeria dothidea isolate AF...   152   8e-36
EU344146_1(EU344146|pid:none) Saturnispora zaruensis strain WM 0...   152   1e-35
(P04050) RecName: Full=DNA-directed RNA polymerase II subunit RP...   152   1e-35
EF059802_1(EF059802|pid:none) Globobulimina turgida RNA polymera...   152   1e-35
EU344119_1(EU344119|pid:none) Candida mesenterica strain MUCL 29...   152   1e-35
AY497730_1(AY497730|pid:none) Candida dubliniensis strain CBS 79...   152   1e-35
EU344071_1(EU344071|pid:none) Candida railenensis strain CBS 816...   151   1e-35
EU344105_1(EU344105|pid:none) Candida glaebosa strain MUCL 29834...   151   1e-35
EF599405_1(EF599405|pid:none) Candida tropicalis strain DUMC 29-...   151   1e-35
EU344092_1(EU344092|pid:none) Candida chilensis strain MUCL 2981...   151   2e-35
DQ294588_1(DQ294588|pid:none) Dimargaris bacillispora isolate AF...   151   2e-35
EF599442_1(EF599442|pid:none) Candida humilis strain CBS 5658 RN...   150   2e-35
AY497726_1(AY497726|pid:none) Clavispora lusitaniae strain CBS 6...   150   2e-35
EF599412_1(EF599412|pid:none) Pichia burtonii strain CBS 2352 RN...   150   2e-35
EU344132_1(EU344132|pid:none) Candida sophiae-reginae strain MUC...   150   3e-35
EU344093_1(EU344093|pid:none) Candida diddensiae strain WM 07.24...   150   3e-35
EU344108_1(EU344108|pid:none) Candida homilentoma strain MUCL 29...   150   3e-35
EU344127_1(EU344127|pid:none) Candida santamariae var. santamari...   150   3e-35
EU344123_1(EU344123|pid:none) Candida rhagii strain WM 07.56 RNA...   150   4e-35
EU344124_1(EU344124|pid:none) Candida rugopelliculosa strain WM ...   150   4e-35
EU344139_1(EU344139|pid:none) Debaryomyces yamadae strain MUCL 3...   150   4e-35
EF059799_1(EF059799|pid:none) Rossyatella sp. DL-2007 RNA polyme...   149   5e-35
AY497727_1(AY497727|pid:none) Clavispora opuntiae strain CBS 706...   149   5e-35
DQ832204_1(DQ832204|pid:none) Rickenella fibula AFTOL-ID 486 RNA...   149   5e-35
EU344101_1(EU344101|pid:none) Candida fermenticarens strain WM 0...   149   5e-35
AY497722_1(AY497722|pid:none) Candida parapsilosis strain CBS 60...   149   5e-35
EU344082_1(EU344082|pid:none) Candida ontarioensis strain CBS 85...   149   5e-35
AY497700_1(AY497700|pid:none) Candida parapsilosis strain ATCC 9...   149   6e-35
EU344104_1(EU344104|pid:none) Candida geochares strain WM 07.35 ...   149   6e-35
CR382133_628(CR382133|pid:none) Debaryomyces hansenii chromosome...   149   8e-35
AY497715_1(AY497715|pid:none) Candida norvegica strain CBS 4239 ...   149   8e-35
DQ782828_1(DQ782828|pid:none) Pertusaria dactylina isolate AFTOL...   149   8e-35
CP000590_138(CP000590|pid:none) Ostreococcus lucimarinus CCE9901...   148   1e-34
DQ294600_1(DQ294600|pid:none) Boothiomyces macroporosum isolate ...   148   1e-34
EU344149_1(EU344149|pid:none) Sporopachydermia lactativora strai...   148   1e-34
EU344148_1(EU344148|pid:none) Sporopachydermia lactativora strai...   148   1e-34
AY497719_1(AY497719|pid:none) Candida intermedia strain CBS 572 ...   148   1e-34
DQ782860_1(DQ782860|pid:none) Acarospora laqueata isolate AFTOL-...   148   1e-34
EU344153_1(EU344153|pid:none) Pichia norvegensis strain CBS 8403...   148   1e-34
AJ581700_1(AJ581700|pid:none) Gromia oviformis partial RPB1 gene...   148   1e-34
DQ883745_1(DQ883745|pid:none) Pyxine subcinerea isolate AFTOL-ID...   148   1e-34
DQ294584_1(DQ294584|pid:none) Polychytrium aggregatum isolate AF...   148   1e-34
EU344121_1(EU344121|pid:none) Candida multigemmis strain MUCL 15...   148   1e-34
DQ911603_1(DQ911603|pid:none) Leucoagaricus barssii isolate AFTO...   147   2e-34
AY935959_1(AY935959|pid:none) Verticillium theobromae strain IMI...   147   2e-34
EU344145_1(EU344145|pid:none) Pichia spartinae strain WM 07.80 R...   147   2e-34
EU344129_1(EU344129|pid:none) Candida savonica strain WM 07.62 R...   147   2e-34
EF059801_1(EF059801|pid:none) Globigerinita glutinata RNA polyme...   147   2e-34
EF599435_1(EF599435|pid:none) Citeromyces matritensis strain CBS...   147   2e-34
EU344130_1(EU344130|pid:none) Candida sequanensis strain MUCL 29...   147   2e-34
EF599438_1(EF599438|pid:none) Pichia anomala strain CBS 605 RNA ...   147   2e-34
AY497712_1(AY497712|pid:none) Debaryomyces carsonii strain CBS 2...   147   2e-34
EF059797_1(EF059797|pid:none) Nonionella labradorica RNA polymer...   147   2e-34
EF599421_1(EF599421|pid:none) Pichia farinosa strain CBS 2020 RN...   147   3e-34
DQ516071_1(DQ516071|pid:none) Chrysomphalina chrysophylla isolat...   147   3e-34
AM269986_4(AM269986|pid:none) Aspergillus niger contig An01c0390...   147   3e-34
EF599409_1(EF599409|pid:none) Candida rugosa strain CBS 613 RNA ...   147   3e-34
AY864877_1(AY864877|pid:none) Grifola sordulenta isolate AFTOL-I...   146   4e-34
EU344098_1(EU344098|pid:none) Candida ergastensis strain MUCL 30...   146   4e-34
EU344073_1(EU344073|pid:none) Metschnikowia drosophilae strain C...   146   5e-34
DQ782819_1(DQ782819|pid:none) Simonyella variegata isolate AFTOL...   146   5e-34
DQ986817_1(DQ986817|pid:none) Lecanora contractula isolate AFTOL...   145   7e-34
AY497720_1(AY497720|pid:none) Issatchenkia orientalis strain CBS...   145   7e-34
AY864864_1(AY864864|pid:none) Gautieria otthii isolate AFTOL-ID ...   145   9e-34
DQ782859_1(DQ782859|pid:none) Acarospora schleicheri isolate AFT...   145   9e-34
EU186064_1(EU186064|pid:none) Cladosporium cladosporioides isola...   145   1e-33
DQ782858_1(DQ782858|pid:none) Pleopsidium chlorophanum isolate A...   144   2e-33
AF315822_1(AF315822|pid:none) Monoblepharis macrandra DNA-depend...   144   2e-33
DQ447940_1(DQ447940|pid:none) Simocybe serrulata isolate AFTOL-I...   144   2e-33
AJ581696_1(AJ581696|pid:none) Allogromia sp. A-DL-2003 partial R...   144   2e-33
DQ000333_1(DQ000333|pid:none) Aschersonia cubensis strain P.C. 4...   144   2e-33
AY864871_1(AY864871|pid:none) Hyphoderma praetermissum isolate A...   144   2e-33
AY864880_1(AY864880|pid:none) Phanerochaete chrysosporium isolat...   144   2e-33
DQ842012_1(DQ842012|pid:none) Monascus purpureus isolate AFTOL-I...   144   2e-33
DQ447907_1(DQ447907|pid:none) Hydnopolyporus fimbriatus isolate ...   144   2e-33
AY864874_1(AY864874|pid:none) Fomitopsis pinicola isolate AFTOL-...   144   2e-33
AY351789_1(AY351789|pid:none) Gymnopilus sapineus voucher PBM 15...   144   2e-33
EU344113_1(EU344113|pid:none) Candida insectorum strain WM 07.45...   144   2e-33
AY351823_1(AY351823|pid:none) Mallocybe subtilisior voucher OKM ...   144   3e-33
EF599415_1(EF599415|pid:none) Metschnikowia reukaufii strain CBS...   144   3e-33
AY555901_1(AY555901|pid:none) Verticillium nigrescens strain 717...   144   3e-33
DQ435802_1(DQ435802|pid:none) Bolbitius vitellinus isolate AFTOL...   144   3e-33
DQ883736_1(DQ883736|pid:none) Lobaria scrobiculata isolate AFTOL...   144   3e-33
AY351820_1(AY351820|pid:none) Mallocybe subflavospora voucher E5...   144   3e-33
EU344142_1(EU344142|pid:none) Metschnikowia agaves strain WM 07....   143   4e-33
EU344152_1(EU344152|pid:none) Candida coipomoensis strain WM 07....   143   4e-33
DQ986821_1(DQ986821|pid:none) Lecidea laboriosa isolate AFTOL 13...   143   4e-33
EF599411_1(EF599411|pid:none) Kodamaea ohmeri strain CBS 5367 RN...   143   4e-33
AY555907_1(AY555907|pid:none) Verticillium catenulatum strain IM...   143   4e-33
DQ986816_1(DQ986816|pid:none) Candelariella terrigena isolate AF...   143   4e-33
DQ294590_1(DQ294590|pid:none) Entomophthora muscae isolate AFTOL...   143   4e-33
EU600888_1(EU600888|pid:none) Inocybe sp. BK2006986 RNA polymera...   143   4e-33
EU344072_1(EU344072|pid:none) Candida fragi strain CBS 7702 RNA ...   143   4e-33
DQ516076_1(DQ516076|pid:none) Pseudoarmillariella ectypoides iso...   143   4e-33
DQ083853_1(DQ083853|pid:none) Cortinarius neolangei voucher TF20...   143   5e-33
AY351821_1(AY351821|pid:none) Mallocybe subflavospora voucher E5...   143   5e-33
DQ083854_1(DQ083854|pid:none) Cortinarius neolangei voucher TSJ2...   143   5e-33
AF389547_1(AF389547|pid:none) Auritella serpentinocystis RNA pol...   143   5e-33
DQ083866_1(DQ083866|pid:none) Cortinarius saporatus voucher TF20...   143   5e-33
EU655643_1(EU655643|pid:none) Cortinarius langeorum voucher TUB ...   143   5e-33
AY497710_1(AY497710|pid:none) Debaryomyces etchellsii strain CBS...   142   6e-33
DQ083852_1(DQ083852|pid:none) Cortinarius natalis voucher TSJ200...   142   6e-33
DQ083832_1(DQ083832|pid:none) Cortinarius cf. natalis TF2002-039...   142   6e-33
DQ083847_1(DQ083847|pid:none) Cortinarius lilacinovelatus vouche...   142   6e-33
DQ447934_1(DQ447934|pid:none) Physalacria bambusae isolate AFTOL...   142   6e-33
EU655651_1(EU655651|pid:none) Cortinarius sp. EUR 2 voucher TUB ...   142   6e-33
DQ782854_1(DQ782854|pid:none) Hypocenomyce scalaris isolate AFTO...   142   6e-33
DQ782831_1(DQ782831|pid:none) Umbilicaria mammulata isolate AFTO...   142   6e-33
EU344106_1(EU344106|pid:none) Candida hawaiiana strain WM 0737 R...   142   8e-33
EU655642_1(EU655642|pid:none) Cortinarius nymphicolor voucher TU...   142   8e-33
DQ000332_1(DQ000332|pid:none) Aschersonia cubensis strain P.C. 3...   142   8e-33
DQ516069_1(DQ516069|pid:none) Agrocybe praecox isolate AFTOL-ID ...   142   8e-33
AF389550_1(AF389550|pid:none) Inocybe stellatospora RNA polymera...   142   8e-33
AY864881_1(AY864881|pid:none) Phlebia radiata isolate AFTOL-ID 4...   142   8e-33
AY555902_1(AY555902|pid:none) Verticillium nigrescens strain 9 D...   142   8e-33
DQ782825_1(DQ782825|pid:none) Roccella fuciformis isolate AFTOL-...   142   8e-33
DQ083834_1(DQ083834|pid:none) Cortinarius claroflavus voucher TS...   142   8e-33
DQ447916_1(DQ447916|pid:none) Mallocybe dulcamara isolate AFTOL-...   142   8e-33
DQ782823_1(DQ782823|pid:none) Echinoplaca strigulacea isolate AF...   142   1e-32
AY555910_1(AY555910|pid:none) Verticillium catenulatum strain IM...   142   1e-32
DQ912372_1(DQ912372|pid:none) Coccocarpia domingensis isolate AF...   142   1e-32
AY351809_1(AY351809|pid:none) Inocybe sp. Trappe 24874 RNA polym...   142   1e-32
DQ083831_1(DQ083831|pid:none) Cortinarius cf. calochrous TF2002-...   142   1e-32
AY555899_1(AY555899|pid:none) Verticillium albo-atrum strain 220...   142   1e-32
DQ782818_1(DQ782818|pid:none) Acarosporina microspora isolate AF...   142   1e-32
AF389541_1(AF389541|pid:none) Inocybe lanuginosa RNA polymerase ...   142   1e-32
EU655644_1(EU655644|pid:none) Cortinarius catharinae voucher TUB...   142   1e-32
DQ083820_1(DQ083820|pid:none) Cortinarius aff. calochrous TF2001...   142   1e-32
AY351811_1(AY351811|pid:none) Inocybe queletii voucher PBM 935 (...   142   1e-32
AY555903_1(AY555903|pid:none) Verticillium nigrescens strain 193...   142   1e-32
DQ083867_1(DQ083867|pid:none) Cortinarius sodagnitus voucher TF2...   141   1e-32
DQ083850_1(DQ083850|pid:none) Cortinarius molochinus voucher TSJ...   141   1e-32
DQ782829_1(DQ782829|pid:none) Lecanora hybocarpa isolate AFTOL-I...   141   1e-32
EU655635_1(EU655635|pid:none) Cortinarius ochraceopallescens vou...   141   1e-32
EU655637_1(EU655637|pid:none) Cortinarius vesterholtii voucher T...   141   1e-32
DQ083830_1(DQ083830|pid:none) Cortinarius cf. calochrous TSJ2002...   141   1e-32
EU655639_1(EU655639|pid:none) Cortinarius insignibulbus voucher ...   141   1e-32
DQ083863_1(DQ083863|pid:none) Cortinarius quercus-ilicis voucher...   141   1e-32
DQ883744_1(DQ883744|pid:none) Anaptychia palmatula isolate AFTOL...   141   1e-32
DQ883742_1(DQ883742|pid:none) Diploschistes cinereocaesius isola...   141   1e-32
EU392708_1(EU392708|pid:none) Moelleriella epiphylla strain I95-...   141   1e-32
DQ680085_1(DQ680085|pid:none) Cortinarius haasii RNA polymerase ...   141   2e-32
AY536282_1(AY536282|pid:none) Inocybe alabamensis RNA polymerase...   141   2e-32
EF469101_1(EF469101|pid:none) Shimizuomyces paradoxus strain EFC...   141   2e-32
DQ083871_1(DQ083871|pid:none) Cortinarius suaveolens voucher TF2...   141   2e-32
DQ447922_1(DQ447922|pid:none) Marasmius rotula isolate AFTOL-ID ...   141   2e-32
DQ785783_1(DQ785783|pid:none) Cantharellus cibarius isolate AFTO...   141   2e-32
EU307857_1(EU307857|pid:none) Inocybe rimosa voucher PBM 2574 (C...   141   2e-32
AY351791_1(AY351791|pid:none) Inocybe adaequata voucher JV 16501...   141   2e-32
EF421024_1(EF421024|pid:none) Lyophyllum favrei strain IE-BSG-HC...   141   2e-32
EU655650_1(EU655650|pid:none) Cortinarius splendificus voucher T...   141   2e-32
EF469100_1(EF469100|pid:none) Shimizuomyces paradoxus strain EFC...   141   2e-32
AY857983_1(AY857983|pid:none) Coprinus comatus isolate AFTOL-ID ...   140   2e-32
DQ447895_1(DQ447895|pid:none) Cyathus striatus isolate AFTOL-ID ...   140   2e-32
DQ883781_1(DQ883781|pid:none) Megalospora tuberculosa isolate AF...   140   2e-32
AY857981_1(AY857981|pid:none) Dacryopinax spathularia isolate AF...   140   2e-32
EF599426_1(EF599426|pid:none) Candida haemulonii strain CBS 5149...   140   3e-32
DQ083824_1(DQ083824|pid:none) Cortinarius alcalinophilus voucher...   140   3e-32
EU569872_1(EU569872|pid:none) Inocybe misakaensis voucher 96234 ...   140   3e-32
DQ083823_1(DQ083823|pid:none) Cortinarius alcalinophilus voucher...   140   3e-32
AY555913_1(AY555913|pid:none) Lecanicillium lecanii strain C42 D...   140   3e-32
AY509116_1(AY509116|pid:none) Inocybe sp. MCA 1882 RNA polymeras...   140   3e-32
EU392733_1(EU392733|pid:none) Moelleriella sloaneae strain I93-8...   140   3e-32
DQ447903_1(DQ447903|pid:none) Gymnopus dryophilus isolate AFTOL-...   140   3e-32
DQ447888_1(DQ447888|pid:none) Cheimonophyllum candidissimum isol...   140   3e-32
EF105431_1(EF105431|pid:none) Lecanora paramerae RNA polymerase ...   140   3e-32
EU569865_1(EU569865|pid:none) Inocybe maculata voucher PBM 2452 ...   140   3e-32
EU655645_1(EU655645|pid:none) Cortinarius olivascentium voucher ...   140   3e-32
DQ083873_1(DQ083873|pid:none) Cortinarius xanthochlorus voucher ...   140   3e-32
AY555904_1(AY555904|pid:none) Verticillium tricorpus strain 22 D...   140   3e-32
DQ435799_1(DQ435799|pid:none) Anthracophyllum archeri isolate AF...   140   3e-32
EU569864_1(EU569864|pid:none) Inocybe maculata voucher PBM 2452 ...   140   3e-32
DQ435808_1(DQ435808|pid:none) Cantharocybe gruberi isolate AFTOL...   140   3e-32
AY351822_1(AY351822|pid:none) Inocybe subochracea voucher PBM 11...   140   4e-32
DQ000350_1(DQ000350|pid:none) Hypocrella sp. P.C. 436.2 RNA poly...   140   4e-32
AY351796_1(AY351796|pid:none) Inocybe cerasphora voucher BSI 01/...   140   4e-32
EU655640_1(EU655640|pid:none) Cortinarius rapaceotomentosus vouc...   140   4e-32
DQ782827_1(DQ782827|pid:none) Mycoblastus sanguinarius isolate A...   140   4e-32
DQ083844_1(DQ083844|pid:none) Cortinarius langei s.l. TF1999-084...   140   4e-32
DQ000352_1(DQ000352|pid:none) Epichloe elymi strain C. Schardl 7...   140   4e-32
DQ986845_1(DQ986845|pid:none) Placynthiella uliginosa isolate AF...   140   4e-32
AF389532_1(AF389532|pid:none) Hebeloma olympianum RNA polymerase...   139   5e-32
AF390020_1(AF390020|pid:none) Inocybe geophylla var. lilacina RN...   139   5e-32
DQ986848_1(DQ986848|pid:none) Ochrolechia yasudae isolate AFTOL ...   139   5e-32
EU392734_1(EU392734|pid:none) Moelleriella sloaneae strain I94-9...   139   5e-32
DQ083840_1(DQ083840|pid:none) Cortinarius fulvocitrinus voucher ...   139   5e-32
EU392702_1(EU392702|pid:none) Hypocrella hirsuta strain P.C. 543...   139   5e-32
DQ447933_1(DQ447933|pid:none) Phyllotopsis sp. MB35 RNA polymera...   139   5e-32
EU620229_1(EU620229|pid:none) Inocybe sp. GDa RNA polymerase II ...   139   5e-32
DQ447938_1(DQ447938|pid:none) Sarcomyxa serotina isolate AFTOL-I...   139   5e-32
EU600860_1(EU600860|pid:none) Inocybe sp. E5980 RNA polymerase I...   139   5e-32
AY239034_1(AY239034|pid:none) Inocybe napipes RNA polymerase II ...   139   5e-32
EU344133_1(EU344133|pid:none) Candida sorboxylosa strain WM 07.6...   139   5e-32
DQ447923_1(DQ447923|pid:none) Megacollybia platyphylla isolate A...   139   7e-32
AY864869_1(AY864869|pid:none) Fomitiporia mediterranea isolate A...   139   7e-32
EU307823_1(EU307823|pid:none) Inocybe hirtella voucher PBM 2650 ...   139   7e-32
AY864867_1(AY864867|pid:none) Coltricia perennis isolate AFTOL-I...   139   7e-32
DQ447894_1(DQ447894|pid:none) Cortinarius violaceus isolate AFTO...   139   7e-32
AY555890_1(AY555890|pid:none) Verticillium dahliae strain 76 DNA...   139   7e-32
DQ435807_1(DQ435807|pid:none) Camarophyllus canescens isolate AF...   139   7e-32
EU569841_1(EU569841|pid:none) Inocybe sp. PBM 2132 RNA polymeras...   139   7e-32
DQ663694_1(DQ663694|pid:none) Erratomyces patelii isolate AFTOL-...   139   7e-32
DQ447924_1(DQ447924|pid:none) Melanoleuca verrucipes isolate AFT...   139   7e-32
DQ447910_1(DQ447910|pid:none) Hygrocybe coccinea isolate AFTOL-I...   139   7e-32
AY351792_1(AY351792|pid:none) Mallocybe agardhii voucher JV 7485...   139   7e-32
AY935960_1(AY935960|pid:none) Verticillium nubilum strain IMI 27...   139   9e-32
DQ789990_1(DQ789990|pid:none) Microstroma juglandis isolate AFTO...   139   9e-32
AY351803_1(AY351803|pid:none) Inocybe geophylla voucher JV 6374 ...   139   9e-32
AY239033_1(AY239033|pid:none) Inocybe glabrodisca RNA polymerase...   139   9e-32
DQ883735_1(DQ883735|pid:none) Crocynia pyxinoides isolate AFTOL-...   139   9e-32
DQ667160_1(DQ667160|pid:none) Heterobasidion annosum isolate AFT...   139   9e-32
FJ536610_1(FJ536610|pid:none) Pisolithus tinctorius voucher AWW2...   138   1e-31
AY860525_1(AY860525|pid:none) Marasmius alliaceus isolate AFTOL-...   138   1e-31
EU307815_1(EU307815|pid:none) Inocybe luteifolia voucher PBM2642...   138   1e-31
EU569837_1(EU569837|pid:none) Inocybe emergens voucher E6203 (TE...   138   1e-31
DQ294585_1(DQ294585|pid:none) Hyaloraphidium curvatum isolate AF...   138   1e-31
AF389549_1(AF389549|pid:none) Mallocybe flavicothurnata voucher ...   138   1e-31
AY351817_1(AY351817|pid:none) Mallocybe sp. PBM 2397 RNA polymer...   138   1e-31
FJ536605_1(FJ536605|pid:none) Phlebopus marginatus voucher REH88...   138   1e-31
FJ787039_1(FJ787039|pid:none) Saccharomyces cerevisiae haplotype...   138   1e-31
EF105429_1(EF105429|pid:none) Everniopsis trulla RNA polymerase ...   138   1e-31
DQ000331_1(DQ000331|pid:none) Aschersonia blumenaviensis strain ...   138   1e-31
EF105435_1(EF105435|pid:none) Pseudevernia furfuracea RNA polyme...   138   1e-31
DQ782857_1(DQ782857|pid:none) Lichinella iodopulchra isolate AFT...   138   1e-31
DQ973059_1(DQ973059|pid:none) Ramalina complanata isolate AFTOL-...   138   1e-31
EU392700_1(EU392700|pid:none) Hypocrella discoidea strain I93-90...   138   1e-31
AY351798_1(AY351798|pid:none) Mallocybe dulcamara voucher PBM 22...   138   1e-31
DQ447927_1(DQ447927|pid:none) Mycena aurantiidisca isolate AFTOL...   138   1e-31
DQ986854_1(DQ986854|pid:none) Peltigera sp. AFTOL 1838 RNA polym...   138   1e-31
AY858966_1(AY858966|pid:none) Flammulina velutipes isolate AFTOL...   138   1e-31
AY239028_1(AY239028|pid:none) Inocybe ayangannae RNA polymerase ...   138   1e-31
AF389534_1(AF389534|pid:none) Inocybe agglutinata RNA polymerase...   138   1e-31
DQ083828_1(DQ083828|pid:none) Cortinarius caesiocortinatus vouch...   138   1e-31
DQ447921_1(DQ447921|pid:none) Marasmius oreades isolate AFTOL-ID...   138   1e-31
AY555917_1(AY555917|pid:none) Verticillium fungicola strain 5 DN...   138   1e-31
DQ859895_1(DQ859895|pid:none) Rhodotorula hinnulea isolate AFTOL...   138   1e-31
EU392694_1(EU392694|pid:none) Hypocrella citrina strain P.C. 606...   137   2e-31
FJ536591_1(FJ536591|pid:none) Calostoma japonicum voucher TKG-SC...   137   2e-31
EU307849_1(EU307849|pid:none) Inocybe fibrillosibrunnea voucher ...   137   2e-31
AY351831_1(AY351831|pid:none) Mallocybe agardhii voucher JV 1374...   137   2e-31
DQ447908_1(DQ447908|pid:none) Hydropus cf. scabripes PBM 2513 is...   137   2e-31
EF059800_1(EF059800|pid:none) Globigerinella siphonifera RNA pol...   137   3e-31
DQ447942_1(DQ447942|pid:none) Termitomyces sp. ZA164 RNA polymer...   137   3e-31
DQ986832_1(DQ986832|pid:none) Niebla cephalota isolate AFTOL 777...   137   3e-31
DQ127242_1(DQ127242|pid:none) Hypocrella panamensis RNA polymera...   137   3e-31
EU600864_1(EU600864|pid:none) Inocybe sp. PBM 2203 RNA polymeras...   137   3e-31
DQ831031_1(DQ831031|pid:none) Punctularia strigosozonata AFTOL-I...   137   3e-31
DQ883741_1(DQ883741|pid:none) Heterodermia vulgaris isolate AFTO...   137   3e-31
FJ536594_1(FJ536594|pid:none) Calostoma sp. HKAS38139 RNA polyme...   137   3e-31
AY555918_1(AY555918|pid:none) Verticillium fungicola strain ARSE...   137   3e-31
EF105433_1(EF105433|pid:none) Oropogon sperlingii RNA polymerase...   137   3e-31
AY333304_1(AY333304|pid:none) Cortinarius aureifolius RNA polyme...   137   3e-31
DQ782820_1(DQ782820|pid:none) Physcia aipolia isolate AFTOL-ID 8...   137   3e-31
AY857979_1(AY857979|pid:none) Calostoma cinnabarinum isolate AFT...   137   3e-31
DQ782817_1(DQ782817|pid:none) Canoparmelia caroliniana isolate A...   137   3e-31
DQ000351_1(DQ000351|pid:none) Hypocrella sp. P.C. 603 RNA polyme...   137   3e-31
AY351793_1(AY351793|pid:none) Inocybe armeniaca voucher PBM 1228...   136   4e-31
DQ447890_1(DQ447890|pid:none) Clavulinopsis laeticolor isolate A...   136   4e-31
EF468862_1(EF468862|pid:none) Ophiocordyceps konnoana strain EFC...   136   4e-31
EF468874_1(EF468874|pid:none) Ophiocordyceps sinensis strain EFC...   136   4e-31
AY485639_1(AY485639|pid:none) Amanita phalloides DNA-dependent R...   136   4e-31
AY788848_1(AY788848|pid:none) Ampulloclitocybe clavipes isolate ...   136   4e-31
DQ083860_1(DQ083860|pid:none) Cortinarius percomis voucher TSJ20...   136   4e-31
EF599422_1(EF599422|pid:none) Pichia farinosa strain CBS 185 RNA...   136   4e-31
AY351790_1(AY351790|pid:none) Inocybe sp. D25 RNA polymerase II ...   136   4e-31
EU088235_1(EU088235|pid:none) Cortinarius cedretorum var. subere...   136   4e-31
AF389535_1(AF389535|pid:none) Inocybe calospora RNA polymerase I...   136   4e-31
DQ127238_1(DQ127238|pid:none) Podocrella harposporifera RNA poly...   136   4e-31
DQ870985_1(DQ870985|pid:none) Placynthiella icmalea RNA polymera...   136   4e-31
EU307832_1(EU307832|pid:none) Inocybe fuligineoatra voucher PBM ...   136   4e-31
EU392695_1(EU392695|pid:none) Hypocrella disciformis strain P.C....   136   4e-31
EF469102_1(EF469102|pid:none) Torrubiella wallacei strain CBS 10...   136   4e-31
EU555459_1(EU555459|pid:none) Inocybe cf. murrayana PBM 2180 RNA...   136   4e-31
DQ083872_1(DQ083872|pid:none) Cortinarius terpsichores voucher T...   136   4e-31
DQ973061_1(DQ973061|pid:none) Nephroma parile isolate AFTOL-ID 1...   136   6e-31
EU392737_1(EU392737|pid:none) Moelleriella turbinata strain IMI ...   136   6e-31
AF389543_1(AF389543|pid:none) Inocybe cf. maculata RNA polymeras...   136   6e-31
DQ870999_1(DQ870999|pid:none) Trapelia chiodectonoides RNA polym...   136   6e-31
EU307854_1(EU307854|pid:none) Inocybe tubarioides voucher PBM 25...   136   6e-31
EF105432_1(EF105432|pid:none) Lecanora sulphurea RNA polymerase ...   136   6e-31
AF389538_1(AF389538|pid:none) Inocybe godeyi RNA polymerase II l...   136   6e-31
DQ973066_1(DQ973066|pid:none) Solorina crocea isolate AFTOL-ID 1...   135   7e-31
DQ870977_1(DQ870977|pid:none) Pertusaria panyrga RNA polymerase ...   135   7e-31
AY351794_1(AY351794|pid:none) Inocybe calamistrata voucher PBM 2...   135   7e-31
DQ083845_1(DQ083845|pid:none) Cortinarius langei s.l. JV01-642 v...   135   7e-31
EF158853_1(EF158853|pid:none) Trapeliopsis percrenata RNA polyme...   135   7e-31
EF421042_1(EF421042|pid:none) Tephrocybe rancida strain CBS204.4...   135   7e-31
EU569839_1(EU569839|pid:none) Inocybe epidendron voucher MCA 188...   135   7e-31
DQ000342_1(DQ000342|pid:none) Aschersonia sp. P.C. 569 RNA polym...   135   7e-31
DQ000341_1(DQ000341|pid:none) Aschersonia sp. P.C. 735 RNA polym...   135   1e-30
DQ870976_1(DQ870976|pid:none) Pertusaria ophthalmiza RNA polymer...   135   1e-30
EU600862_1(EU600862|pid:none) Inocybe sororia voucher JRH661 (WT...   135   1e-30
FJ536620_1(FJ536620|pid:none) Scleroderma sp. AWW260 RNA polymer...   135   1e-30
DQ986844_1(DQ986844|pid:none) Umbilicaria spodochroa isolate AFT...   135   1e-30
EF421027_1(EF421027|pid:none) Calocybe persicolor strain IE-BSG-...   135   1e-30
DQ000330_1(DQ000330|pid:none) Aschersonia basicystis strain P.C....   135   1e-30
EU392729_1(EU392729|pid:none) Moelleriella rhombispora strain CU...   135   1e-30
T43217(T43217) RNA polymerase (EC 2.7.7.-) II, largest chain - P...   135   1e-30
DQ986847_1(DQ986847|pid:none) Siphula ceratites isolate AFTOL 84...   135   1e-30
DQ680084_1(DQ680084|pid:none) Cortinarius dalecarlicus RNA polym...   135   1e-30
AY351843_1(AY351843|pid:none) Rhodocybe aureicystidiata RNA poly...   135   1e-30
EF468893_1(EF468893|pid:none) Nomuraea rileyi strain CBS 806.71 ...   135   1e-30
EU392718_1(EU392718|pid:none) Moelleriella madidiensis strain P....   135   1e-30
FJ267704_1(FJ267704|pid:none) Catenulostroma abietis isolate AFT...   135   1e-30
EF421023_1(EF421023|pid:none) Calocybe fallax strain IE-BSG-HC80...   135   1e-30
EF599425_1(EF599425|pid:none) Candida intermedia strain CBS 7153...   135   1e-30
EU392719_1(EU392719|pid:none) Moelleriella ochracea strain I93-9...   135   1e-30
DQ663702_1(DQ663702|pid:none) Exobasidium gracile isolate AFTOL-...   134   2e-30
DQ883778_1(DQ883778|pid:none) Flavoparmelia caperata isolate AFT...   134   2e-30
DQ000327_1(DQ000327|pid:none) Aschersonia andropogonis strain P....   134   2e-30
DQ986843_1(DQ986843|pid:none) Umbilicaria rigida isolate AFTOL 1...   134   2e-30
DQ842011_1(DQ842011|pid:none) Dibaeis baeomyces isolate AFTOL-ID...   134   2e-30
AY239036_1(AY239036|pid:none) Inocybe teraturgus RNA polymerase ...   134   2e-30
AY857987_1(AY857987|pid:none) Clavaria zollingeri isolate AFTOL-...   134   2e-30
DQ883739_1(DQ883739|pid:none) Lobariella pallida isolate AFTOL-I...   134   2e-30
DQ127245_1(DQ127245|pid:none) Polycephalomyces formosus RNA poly...   134   2e-30
DQ447918_1(DQ447918|pid:none) Kuehneromyces rostratus isolate AF...   134   2e-30
DQ990921_1(DQ990921|pid:none) Phyllobaeis erythrella isolate AFT...   134   2e-30
DQ883737_1(DQ883737|pid:none) Pseudocyphellaria anomala isolate ...   134   2e-30
DQ883743_1(DQ883743|pid:none) Coccocarpia erythroxyli isolate AF...   134   2e-30
AY497723_1(AY497723|pid:none) Metschnikowia pulcherrima strain C...   134   2e-30
DQ000335_1(DQ000335|pid:none) Aschersonia incrassata strain P.C....   134   2e-30
DQ986819_1(DQ986819|pid:none) Hypocenomyce scalaris isolate AFTO...   134   2e-30
DQ986831_1(DQ986831|pid:none) Psora rubiformis isolate AFTOL 219...   134   2e-30
EF059796_1(EF059796|pid:none) Bathysiphon flexilis RNA polymeras...   134   2e-30
EU555455_1(EU555455|pid:none) Inocybe sp. PBM 2125 (E6758) RNA p...   134   2e-30
DQ127235_1(DQ127235|pid:none) Regiocrella sinensis RNA polymeras...   134   2e-30
DQ447891_1(DQ447891|pid:none) Clitocybe candicans isolate AFTOL-...   134   2e-30
DQ447892_1(DQ447892|pid:none) Clitocybe subditopoda isolate AFTO...   134   2e-30
DQ000328_1(DQ000328|pid:none) Aschersonia basicystis strain P.C....   134   2e-30
DQ870984_1(DQ870984|pid:none) Placopsis gelida RNA polymerase II...   134   3e-30
DQ083837_1(DQ083837|pid:none) Cortinarius dionysae voucher TSJ20...   134   3e-30
DQ870958_1(DQ870958|pid:none) Ochrolechia oregonensis RNA polyme...   134   3e-30
EF421050_1(EF421050|pid:none) Nolanea strictia strain DUKE-JM96/...   134   3e-30
EU392721_1(EU392721|pid:none) Moelleriella ochracea strain IE 13...   134   3e-30
FJ536612_1(FJ536612|pid:none) Scleroderma areolatum voucher PBM2...   134   3e-30
EF179794_1(EF179794|pid:none) Usnea subantarctica strain 73 RNA ...   134   3e-30
DQ870939_1(DQ870939|pid:none) Coccotrema cucurbitula RNA polymer...   134   3e-30
DQ447936_1(DQ447936|pid:none) Rhodocollybia maculata isolate AFT...   134   3e-30
AY351800_1(AY351800|pid:none) Inocybe fastigiella voucher JRH 40...   134   3e-30
EF059795_1(EF059795|pid:none) Bulimina marginata RNA polymerase ...   133   4e-30
EU307842_1(EU307842|pid:none) Inocybe olympiana voucher PBM 2219...   133   4e-30
DQ870936_1(DQ870936|pid:none) Baeomyces placophyllus RNA polymer...   133   4e-30
AY351824_1(AY351824|pid:none) Inocybe tahquamenonensis voucher P...   133   4e-30
AY239029_1(AY239029|pid:none) Inocybe candidipes RNA polymerase ...   133   4e-30
FJ536608_1(FJ536608|pid:none) Pisolithus aurantioscabrosus vouch...   133   4e-30
AY509117_1(AY509117|pid:none) Phaeocollybia festiva RNA polymera...   133   4e-30
EU392716_1(EU392716|pid:none) Moelleriella libera strain P.C. 55...   133   4e-30
AY351816_1(AY351816|pid:none) Inocybe cf. serrata Trappe 25079 v...   133   4e-30
AF389546_1(AF389546|pid:none) Inocybe relicina RNA polymerase II...   133   4e-30
EF469090_1(EF469090|pid:none) Elaphocordyceps subsessilis strain...   133   5e-30
AY239030_1(AY239030|pid:none) Inocybe chelanensis specimen-vouch...   133   5e-30
DQ447937_1(DQ447937|pid:none) Rhodocybe mundula isolate AFTOL-ID...   133   5e-30
DQ986849_1(DQ986849|pid:none) Ochrolechia sp. AFTOL 318 RNA poly...   133   5e-30
EF421049_1(EF421049|pid:none) Entoloma sericeonitidum strain TB7...   133   5e-30
DQ986846_1(DQ986846|pid:none) Trapeliopsis flexuosa isolate AFTO...   133   5e-30
DQ294591_1(DQ294591|pid:none) Conidiobolus coronatus isolate AFT...   133   5e-30
DQ986833_1(DQ986833|pid:none) Squamarina cartilaginea isolate AF...   133   5e-30
DQ832250_1(DQ832250|pid:none) Tilletia goloskokovii AFTOL-ID 171...   132   6e-30
EF421034_1(EF421034|pid:none) Lyophyllum caerulescens strain IE-...   132   6e-30
DQ832232_1(DQ832232|pid:none) Sporisorium reilianum AFTOL-ID 490...   132   6e-30
EU392727_1(EU392727|pid:none) Hypocrella raciborskii strain AFR ...   132   6e-30
EF092102_1(EF092102|pid:none) Bulbothrix meizospora voucher GPGC...   132   8e-30
EF421037_1(EF421037|pid:none) Lyophyllum sykosporum strain IFO30...   132   8e-30
EU088211_1(EU088211|pid:none) Cortinarius citrinus voucher TUB 0...   132   8e-30
EU434330_1(EU434330|pid:none) Tylopilus ballouii voucher T.W. Os...   132   8e-30
DQ825423_1(DQ825423|pid:none) Calocybe carnea RNA polymerase II ...   132   8e-30
AY351833_1(AY351833|pid:none) Inocybe griseolilacina RNA polymer...   132   8e-30
AY788847_1(AY788847|pid:none) Amanita brunnescens isolate AFTOL-...   132   8e-30
EF092130_1(EF092130|pid:none) Namakwa exornata voucher MAF-Lich ...   132   8e-30
EF421026_1(EF421026|pid:none) Calocybe obscurissima strain IE-BS...   132   8e-30
DQ871000_1(DQ871000|pid:none) Trapeliopsis flexuosa RNA polymera...   132   8e-30
DQ000347_1(DQ000347|pid:none) Hypocrella macrostroma strain P.C....   132   8e-30
DQ294594_1(DQ294594|pid:none) Coemansia reversa isolate AFTOL-ID...   132   8e-30
EU434337_1(EU434337|pid:none) Tylopilus ballouii voucher T.W. Os...   132   1e-29
AY351812_1(AY351812|pid:none) Inocybe serotina voucher NI 210995...   132   1e-29
EU088207_1(EU088207|pid:none) Cortinarius picea voucher TUB 0126...   132   1e-29
EF092156_1(EF092156|pid:none) Xanthoparmelia mougeotii voucher M...   132   1e-29
DQ447930_1(DQ447930|pid:none) Tubaria serrulata isolate AFTOL-ID...   132   1e-29
DQ831027_1(DQ831027|pid:none) Pseudozyma flocculosa AFTOL-ID 864...   132   1e-29
AY351810_1(AY351810|pid:none) Inocybe pusio voucher PBM 2297 (WT...   132   1e-29
DQ447917_1(DQ447917|pid:none) Inocybe mutata isolate AFTOL-ID 16...   132   1e-29
AY858965_1(AY858965|pid:none) Suillus pictus isolate AFTOL-ID 71...   132   1e-29
EU392696_1(EU392696|pid:none) Hypocrella disciformis strain P.C....   132   1e-29
DQ870960_1(DQ870960|pid:none) Ochrolechia pallescens RNA polymer...   132   1e-29
EF092111_1(EF092111|pid:none) Hypotrachyna ciliata voucher MAF-L...   131   1e-29
EF421022_1(EF421022|pid:none) Asterophora parasitica strain CBS6...   131   1e-29
DQ923677_1(DQ923677|pid:none) Alectoria ochroleuca voucher Wedin...   131   1e-29
DQ680082_1(DQ680082|pid:none) Cortinarius aureocalceolatus RNA p...   131   1e-29
EU655653_1(EU655653|pid:none) Cortinarius glaucescens voucher TU...   131   1e-29
EU434331_1(EU434331|pid:none) Tylopilus ballouii voucher T.W. Os...   131   1e-29
DQ870989_1(DQ870989|pid:none) Protothelenella sphinctrinoidella ...   131   1e-29
EF092154_1(EF092154|pid:none) Xanthoparmelia brachinaensis vouch...   131   1e-29
FJ358410_1(FJ358410|pid:none) Eremascus albus isolate CBS 975.69...   131   1e-29
EF179787_1(EF179787|pid:none) Usnea lambii strain 42 RNA polymer...   131   1e-29
DQ870993_1(DQ870993|pid:none) Schaereria corticola RNA polymeras...   131   1e-29
EF468866_1(EF468866|pid:none) Ophiocordyceps nigrella strain EFC...   131   1e-29
EU434336_1(EU434336|pid:none) Tylopilus ballouii voucher R.E. Ha...   131   1e-29
EU434332_1(EU434332|pid:none) Tylopilus ballouii voucher T.W. Os...   131   1e-29
DQ785784_1(DQ785784|pid:none) Cintractia sorghi-vulgaris isolate...   131   1e-29
EU088216_1(EU088216|pid:none) Cortinarius saxamontanus voucher B...   131   2e-29
EF092114_1(EF092114|pid:none) Imshaugia aleurites voucher MAF-Li...   131   2e-29
DQ923696_1(DQ923696|pid:none) Platismatia norvegica voucher Tibe...   131   2e-29
DQ986823_1(DQ986823|pid:none) Bryoria trichodes isolate AFTOL 20...   131   2e-29
DQ127236_1(DQ127236|pid:none) Ascopolyporus polychrous RNA polym...   131   2e-29
EU088239_1(EU088239|pid:none) Cortinarius variicolor voucher TUB...   131   2e-29
EF092144_1(EF092144|pid:none) Parmotrema haitiense voucher MAF-L...   131   2e-29
AY333307_1(AY333307|pid:none) Phaeomarasmius proximans RNA polym...   131   2e-29
EF092099_1(EF092099|pid:none) Arctoparmelia centrifuga voucher M...   131   2e-29
DQ846892_1(DQ846892|pid:none) Ustanciosporium standleyanum isola...   130   2e-29

>AF058710_1(AF058710|pid:none) Dictyostelium discoideum RNA
           polymerase II largest subunit (RPB1) gene, partial cds.
          Length = 757

 Score =  388 bits (996), Expect = e-107
 Identities = 193/206 (93%), Positives = 193/206 (93%)
 Frame = +1

Query: 1   FHIGFIDTVLKILRCVCYHCSKLLTDTNEHSFRQALKIRNQKHRLNAVVDCCKNKKVCAI 180
           FHIGFIDTVLKILRCVCYHCSKLLTDTNEHSFRQALKIRNQKHRLNAVVDCCKNKKVCAI
Sbjct: 16  FHIGFIDTVLKILRCVCYHCSKLLTDTNEHSFRQALKIRNQKHRLNAVVDCCKNKKVCAI 75

Query: 181 GGEEEGEHDLSKTDEELDKPVKHGGCGNVLPKITKEDLKIIVEFKDVTDESIEKKSVLSA 360
           GGEEE EHDLSKTDEELDKPVKHGGCGNVLPKITKEDLKIIVEFKDVTD SIEKKSVLSA
Sbjct: 76  GGEEEEEHDLSKTDEELDKPVKHGGCGNVLPKITKEDLKIIVEFKDVTDGSIEKKSVLSA 135

Query: 361 ERVLNILKRIKDEDSRAMGINPDWARADWMIATXXXXXXXXXXXSIMMDTSTRGEDDLTH 540
           ERVLNILKRIKDEDSRAMGINPDWARADWMIAT           SIMMDTSTRGEDDLTH
Sbjct: 136 ERVLNILKRIKDEDSRAMGINPDWARADWMIATVLPVPPPPVRPSIMMDTSTRGEDDLTH 195

Query: 541 KLADIVKANRELQRQEKNGAPAHIIA 618
           KLADIVKANRELQRQEKNGAPAHIIA
Sbjct: 196 KLADIVKANRELQRQEKNGAPAHIIA 221

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 935,302,531
Number of extensions: 17521252
Number of successful extensions: 50459
Number of sequences better than 10.0: 1102
Number of HSP's gapped: 47647
Number of HSP's successfully gapped: 1114
Length of query: 209
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 86
Effective length of database: 653,084,107
Effective search space: 56165233202
Effective search space used: 56165233202
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.72  gvh: 0.40  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U13747-1 is cyt
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0