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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13740-1
Contig ID Contig-U13740-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13740-1 (Contig-U13740-1Q) /CSM_Contig/Contig-U13740-1Q.Seq.d
TAATCCTTTAAATTAAATTCATAGTCGACCAATAGATCAAACAAAATATA
AATTAGAAAAATAAACAAATAGAATAATGTGTCAACCAGTAGTAGCTACA
TTTAAGAAATCAACTGTACATATATATAGAGACTGTATTAGATTAGCAAG
ATATATAGGTGATATGAATGGGCATGCCAAAAATATGTCCAAACAAGTTC
GTATAGTATTTAGAACAAATCAATTTGAAATTGATCCAAAGAAAATAGAA
GAACAAAAAACAGATGCTGTCCGTTTTTTAACAAATTTTATGCAACATGA
AGCAGAAAGAATGGCAAGAAGTCAAAAGAAAGCAGCATCTGAATCAACCC
AAACTCCAAGAACAAGATCAACTCTTGATTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAATTTAAAATATATAAAACAAACTCTTGGTAGGGTTTAAA
AAACAAAATAAAACCAAACAAAAAATATAAATATAATTTATAAAATCTTA
A
Gap no gap
Contig length 501
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 1427450
End point 1427951
Strand (PLUS/MINUS) PLUS
Number of clones 4
Number of EST 5
Link to clone list U13740
List of clone(s) 

est1=SSF356E,1,502
est2=VSJ244Z,16,288
est3=VSJ244F,38,390
est4=SSJ759F,41,426
est5=VHM416F,60,390
Translated Amino Acid sequence 
npln*ihsrpidqtkyklek*TNRIMCQPVVATFKKSTVHIYRDCIRLARYIGDMNGHAK
NMSKQVRIVFRTNQFEIDPKKIEEQKTDAVRFLTNFMQHEAERMARSQKKAASESTQTPR
TRSTLD*kkkkkkkkkkfkiyktnsw*glknkikpnkkykynl*nl
Translated Amino Acid sequence (All Frames) 
Frame A:
*sfklns*stnrsnki*irkink*nnvstsssyi*einctyi*rly*iskiyr*yewacq
kyvqtssysi*nksi*n*skenrrtknrccpffnkfyat*srkngkkskessi*inpnsk
nkins*lkkkkkkkkkki*ni*nkllvgfkkqnktkqki*i*fiks*


Frame B:
npln*ihsrpidqtkyklek*TNRIMCQPVVATFKKSTVHIYRDCIRLARYIGDMNGHAK
NMSKQVRIVFRTNQFEIDPKKIEEQKTDAVRFLTNFMQHEAERMARSQKKAASESTQTPR
TRSTLD*kkkkkkkkkkfkiyktnsw*glknkikpnkkykynl*nl


Frame C:
il*ikfivdq*ikqnin*knkqie*cvnq**lhlrnqlyiyietvld*qdi*vi*mgmpk
icpnkfv*yleqinlkliqrk*knkkqmlsvf*qilcnmkqkewqevkrkqhlnqpklqe
qdqllikkkkkkkkkknlkyikqtlgrv*ktk*nqtkniniiykil
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13740-1 (Contig-U13740-1Q)
/CSM_Contig/Contig-U13740-1Q.Seq.d
         (501 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13740-1 (Contig-U13740-1Q) /CSM_Contig/Conti...   753  0.0
Contig-U01586-1 (Contig-U01586-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U04536-1 (Contig-U04536-1Q) /CSM_Contig/Conti...    34  0.14
Contig-U00070-1 (Contig-U00070-1Q) /CSM_Contig/Conti...    34  0.14
Contig-U13945-1 (Contig-U13945-1Q) /CSM_Contig/Conti...    32  0.54
Contig-U13933-1 (Contig-U13933-1Q) /CSM_Contig/Conti...    32  0.54
Contig-U12717-1 (Contig-U12717-1Q) /CSM_Contig/Conti...    32  0.54
Contig-U12390-1 (Contig-U12390-1Q) /CSM_Contig/Conti...    32  0.54
Contig-U11816-1 (Contig-U11816-1Q) /CSM_Contig/Conti...    32  0.54
Contig-U11805-1 (Contig-U11805-1Q) /CSM_Contig/Conti...    32  0.54

>Contig-U13740-1 (Contig-U13740-1Q) /CSM_Contig/Contig-U13740-1Q.Seq.d
          Length = 501

 Score =  753 bits (380), Expect = 0.0
 Identities = 380/380 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatcctttaaattaaattcatagtcgaccaatagatcaaacaaaatataaattagaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   taatcctttaaattaaattcatagtcgaccaatagatcaaacaaaatataaattagaaaa 60

                                                                       
Query: 61  ataaacaaatagaataatgtgtcaaccagtagtagctacatttaagaaatcaactgtaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ataaacaaatagaataatgtgtcaaccagtagtagctacatttaagaaatcaactgtaca 120

                                                                       
Query: 121 tatatatagagactgtattagattagcaagatatataggtgatatgaatgggcatgccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tatatatagagactgtattagattagcaagatatataggtgatatgaatgggcatgccaa 180

                                                                       
Query: 181 aaatatgtccaaacaagttcgtatagtatttagaacaaatcaatttgaaattgatccaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaatatgtccaaacaagttcgtatagtatttagaacaaatcaatttgaaattgatccaaa 240

                                                                       
Query: 241 gaaaatagaagaacaaaaaacagatgctgtccgttttttaacaaattttatgcaacatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaaaatagaagaacaaaaaacagatgctgtccgttttttaacaaattttatgcaacatga 300

                                                                       
Query: 301 agcagaaagaatggcaagaagtcaaaagaaagcagcatctgaatcaacccaaactccaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agcagaaagaatggcaagaagtcaaaagaaagcagcatctgaatcaacccaaactccaag 360

                               
Query: 361 aacaagatcaactcttgatt 380
           ||||||||||||||||||||
Sbjct: 361 aacaagatcaactcttgatt 380


 Score = 67.9 bits (34), Expect = 1e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 413 tttaaaatatataaaacaaactcttggtagggtt 446
           ||||||||||||||||||||||||||||||||||
Sbjct: 413 tttaaaatatataaaacaaactcttggtagggtt 446


>Contig-U01586-1 (Contig-U01586-1Q) /CSM_Contig/Contig-U01586-1Q.Seq.d
          Length = 1237

 Score = 36.2 bits (18), Expect = 0.035
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 40  aacaaaatataaattagaaaaa 61
           ||||||||||||||| ||||||
Sbjct: 249 aacaaaatataaatttgaaaaa 228


 Score = 28.2 bits (14), Expect = 8.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 283 aaattttatgcaac 296
           ||||||||||||||
Sbjct: 836 aaattttatgcaac 849


>Contig-U04536-1 (Contig-U04536-1Q) /CSM_Contig/Contig-U04536-1Q.Seq.d
          Length = 507

 Score = 34.2 bits (17), Expect = 0.14
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                           
Query: 57 aaaaataaacaaataga 73
          |||||||||||||||||
Sbjct: 46 aaaaataaacaaataga 62


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6482
Number of Sequences: 6905
Number of extensions: 6482
Number of successful extensions: 805
Number of sequences better than 10.0: 265
length of query: 501
length of database: 5,674,871
effective HSP length: 16
effective length of query: 485
effective length of database: 5,564,391
effective search space: 2698729635
effective search space used: 2698729635
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12.13
Homology vs DNA 
Query= Contig-U13740-1 (Contig-U13740-1Q) /CSM_Contig/Contig-U13740-1Q.Seq.d
         (501 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C92796) Dictyostelium discoideum slug cDNA, clone SSF356.        753   0.0    1
(AU269634) Dictyostelium discoideum vegetative cDNA clone:VS...   680   0.0    1
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693...   240   0.0    4
(BJ425278) Dictyostelium discoideum cDNA clone:ddv55p04, 5' ...   636   e-178  1
(AU269635) Dictyostelium discoideum vegetative cDNA clone:VS...   513   e-141  1
(AU074191) Dictyostelium discoideum slug cDNA, clone SSJ759.      476   e-130  1
(AC166193) Otolemur garnettii clone CH256-11J5, WORKING DRAF...    52   0.019  1
(CC546357) CH240_429O22.T7 CHORI-240 Bos taurus genomic clon...    46   0.038  2
(AC201687) Strongylocentrotus purpuratus clone R3-3121J19, W...    40   0.047  4
(BS000574) Pan troglodytes chromosome Y clone:PTB-031D23, co...    40   0.18   3
(AC147147) Pan troglodytes BAC clone CH251-230I19 from Y, co...    40   0.18   3
(EF410171) Synthetic construct Bacillus anthracis clone FLH2...    48   0.30   1
(AC134011) Rattus norvegicus clone CH230-223C19, *** SEQUENC...    48   0.30   1
(AC109675) Rattus norvegicus clone CH230-46E19, *** SEQUENCI...    48   0.30   1
(BF572080) 602076842F1 NIH_MGC_62 Homo sapiens cDNA clone IM...    48   0.30   1
(CP000485) Bacillus thuringiensis str. Al Hakam, complete ge...    48   0.30   1
(CP000001) Bacillus cereus E33L, complete genome.                  48   0.30   1
(AE017355) Bacillus thuringiensis serovar konkukian str. 97-...    48   0.30   1
(AE017334) Bacillus anthracis str. 'Ames Ancestor', complete...    48   0.30   1
(AE017225) Bacillus anthracis str. Sterne, complete genome.        48   0.30   1
(AE017194) Bacillus cereus ATCC 10987, complete genome.            48   0.30   1
(AE016879) Bacillus anthracis str. Ames, complete genome.          48   0.30   1
(CU896699) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.38   4
(AC170989) Medicago truncatula chromosome 7 BAC clone mth2-7...    46   0.40   5
(AC188521) Canis Familiaris chromosome X, clone XX-312E24, c...    36   0.63   5
(CU681852) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   0.64   2
(AC205876) Homo sapiens FOSMID clone ABC9-41271200D24 from c...    36   0.77   4
(CZ958635) 308914 Tomato EcoRI BAC Library Solanum lycopersi...    36   0.83   2
(DB906543) Populus nigra mRNA, clone: PnFL2-077_P12, 3'end.        34   0.86   2
(AC068275) Homo sapiens chromosome 2 clone RP11-121G13, WORK...    42   0.86   3
(AC200365) Pongo abelii clone CH253-150E20, WORKING DRAFT SE...    44   0.90   3
(AC222323) Bos taurus clone CH240-415B5, WORKING DRAFT SEQUE...    46   0.96   3
(AL954308) Zebrafish DNA sequence from clone DKEY-13J15 in l...    46   1.2    1
(AC170421) Rhesus Macaque 14 BAC CH250-340G19 (Children's Ho...    46   1.2    1
(AP008218) Oryza sativa (japonica cultivar-group) genomic DN...    46   1.2    1
(AL844880) Oryza sativa chromosome 12, . BAC OSJNBb0049H14 o...    46   1.2    1
(EA694024) Sequence 72903 from patent US 7365185.                  46   1.2    1
(AC119687) Rattus norvegicus clone CH230-409C17, WORKING DRA...    46   1.2    1
(AC106541) Rattus norvegicus clone CH230-227O7, *** SEQUENCI...    46   1.2    1
(CR450746) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   1.2    1
(AC231204) Lama pacos clone CH246-260A19, WORKING DRAFT SEQU...    46   1.2    1
(AC212961) Chlorocebus aethiops clone CH252-75D21, WORKING D...    46   1.2    1
(AC204464) Procavia capensis clone CH280-187D8, WORKING DRAF...    46   1.2    1
(AC175146) Bos taurus clone CH240-442H22, WORKING DRAFT SEQU...    46   1.2    1
(BH325280) CH230-93F20.TV CHORI-230 Segment 1 Rattus norvegi...    46   1.2    1
(EK424660) 1095516004198 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.2    1
(EJ727174) 1092959547116 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.2    1
(EJ717650) 1092959432483 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.2    1
(EJ333099) 1092963455840 Global-Ocean-Sampling_GS-28-01-01-1...    46   1.2    1
(EI262803) OR__Ba0069I05.r OR__Ba Oryza rufipogon genomic cl...    46   1.2    1
(BG476756) 602524678F1 NIH_MGC_20 Homo sapiens cDNA clone IM...    46   1.2    1
(BB260788) Mus musculus 7 days neonate cerebellum cDNA, RIKE...    46   1.2    1
(EX527873) MTGland_A034_2007-05-23/MTGlandA034_C03_014_1 Med...    46   1.2    1
(CP000575) Staphylothermus marinus F1, complete genome.            46   1.2    1
(CV234422) WS01214.B21_N16 PT-GT-FL-A-3 Populus trichocarpa ...    34   1.7    2
(DV774025) McClintock_54_D01.ab1 Homarus EST library project...    42   1.7    2
(EA048113) Sequence 4 from patent US 7154021.                      38   1.7    5
(EC826314) SME00000576 esmbsro2 Sawyeria marylandensis cDNA,...    40   1.8    2
(AL591982) Listeria monocytogenes strain EGD, complete genom...    36   1.8    6
(CT491637) A BAC library has been constructed from cultivar ...    34   1.9    2
(AE002161) Chlamydophila pneumoniae AR39, complete genome.         34   2.1    2
(EK005342) 1092955075149 Global-Ocean-Sampling_GS-31-01-01-1...    38   2.2    2
(AZ528215) ENTBG12TF Entamoeba histolytica Sheared DNA Entam...    38   2.2    2
(AE017158) Chlamydophila pneumoniae TW-183, section 2 of 4 o...    34   2.3    2
(BH133485) ENTOI85TF Entamoeba histolytica Sheared DNA Entam...    38   2.4    2
(EA292432) Sequence 3 from patent US 7271311.                      40   2.4    2
(E49677) Diabetes-critical model mammal.                           40   2.4    2
(BD012722) Mammalian model for diabetes.                           40   2.4    2
(AC009066) Homo sapiens chromosome 16 clone RP11-309O14, WOR...    36   2.4    3
(AC184421) Strongylocentrotus purpuratus clone R3-3114B21, W...    40   2.5    4
(AC203561) Medicago truncatula clone mth2-97p8, complete seq...    44   2.9    2
(EF146844) Populus trichocarpa clone WS01214_N16 unknown mRNA.     34   3.1    2
(EX185474) gmnbspic_0006m01.pDNRm13r Gadus morhua spleen lib...    34   3.2    2
(AF269226) Cloning vector pTIKL, complete sequence.                40   3.3    3
(AF269225) Cloning vector pLITTLE, complete sequence.              40   3.3    3
(AX641671) Sequence 2861 from Patent WO0101118.                    36   3.5    6
(AF269238) Cloning vector pTX-FLAG, complete sequence.             40   3.5    3
(AC224961) Bos taurus clone CH240-471D13, WORKING DRAFT SEQU...    38   3.7    5
(EE574652) fCO32nDBL26 Ugandan isolate UAM32 Pf var gene cDN...    38   3.7    2
(AB072914) Expression vector pMFXU4 DNA, complete sequence.        40   3.8    2
(AF269237) Cloning vector pTX-GFP, complete sequence.              40   4.0    3
(AF270470) Cloning vector pBIG, complete sequence.                 40   4.1    3
(AM427706) Vitis vinifera contig VV78X032823.5, whole genome...    34   4.2    3
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ...    34   4.3    8
(AC184399) Strongylocentrotus purpuratus clone R3-3112C9, WO...    40   4.5    2
(AL805981) Mouse DNA sequence from clone RP23-275G4 on chrom...    36   4.6    6
(AC146605) Mus musculus BAC clone RP23-304J7 from chromosome...    42   4.6    3
(AR027319) Sequence 6 from patent US 5856178.                      40   4.6    2
(BX571969) Zebrafish DNA sequence from clone DKEY-93P1 in li...    44   4.7    1
(BX546446) Zebrafish DNA sequence from clone DKEY-7K24 in li...    44   4.7    1
(BX510937) Zebrafish DNA sequence from clone DKEY-90G19 in l...    44   4.7    1
(AL929299) Zebrafish DNA sequence from clone BUSM1-SL6.            44   4.7    1
(AL714030) Zebrafish DNA sequence from clone BUSM1-223C6 in ...    44   4.7    1
(AL590149) Zebrafish DNA sequence from clone RP71-36D5 in li...    44   4.7    1
(BV669579) S215P60079RB4.T0 Clara Pan troglodytes troglodyte...    44   4.7    1
(BV669571) S215P60092RH10.T0 Clara Pan troglodytes troglodyt...    44   4.7    1
(AC102934) Mus musculus chromosome 3, clone RP24-209C11, com...    44   4.7    1
(AC099596) Mus musculus chromosome 15, clone RP23-26P23, com...    44   4.7    1
(AC214220) Macaca mulatta  BAC CH250-259N13 (Children's Hosp...    44   4.7    1
(AC213077) Pan troglodytes BAC clone CH251-76L4 from chromos...    44   4.7    1

>(C92796) Dictyostelium discoideum slug cDNA, clone SSF356.
          Length = 502

 Score =  753 bits (380), Expect = 0.0
 Identities = 380/380 (100%)
 Strand = Plus / Plus


Query: 1   taatcctttaaattaaattcatagtcgaccaatagatcaaacaaaatataaattagaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   taatcctttaaattaaattcatagtcgaccaatagatcaaacaaaatataaattagaaaa 60


Query: 61  ataaacaaatagaataatgtgtcaaccagtagtagctacatttaagaaatcaactgtaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ataaacaaatagaataatgtgtcaaccagtagtagctacatttaagaaatcaactgtaca 120


Query: 121 tatatatagagactgtattagattagcaagatatataggtgatatgaatgggcatgccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tatatatagagactgtattagattagcaagatatataggtgatatgaatgggcatgccaa 180


Query: 181 aaatatgtccaaacaagttcgtatagtatttagaacaaatcaatttgaaattgatccaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaatatgtccaaacaagttcgtatagtatttagaacaaatcaatttgaaattgatccaaa 240


Query: 241 gaaaatagaagaacaaaaaacagatgctgtccgttttttaacaaattttatgcaacatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaaaatagaagaacaaaaaacagatgctgtccgttttttaacaaattttatgcaacatga 300


Query: 301 agcagaaagaatggcaagaagtcaaaagaaagcagcatctgaatcaacccaaactccaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agcagaaagaatggcaagaagtcaaaagaaagcagcatctgaatcaacccaaactccaag 360


Query: 361 aacaagatcaactcttgatt 380
           ||||||||||||||||||||
Sbjct: 361 aacaagatcaactcttgatt 380

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 592,753,700
Number of extensions: 38512276
Number of successful extensions: 3746814
Number of sequences better than 10.0: 310
Length of query: 501
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 478
Effective length of database: 93,106,754,628
Effective search space: 44505028712184
Effective search space used: 44505028712184
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7. 8
Homology vs Protein 
Query= Contig-U13740-1 (Contig-U13740-1Q) /CSM_Contig/Contig-U13740-1Q.Seq.d
         (501 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115607_15(AC115607|pid:none) Dictyostelium discoideum chromoso...   202   3e-51
EF145717_1(EF145717|pid:none) Populus trichocarpa clone WS0112_O...    60   2e-08
CP001326_676(CP001326|pid:none) Micromonas sp. RCC299 chromosome...    52   1e-05
AY059890_1(AY059890|pid:none) Arabidopsis thaliana Unknown prote...    50   2e-05
AB022216_14(AB022216|pid:none) Arabidopsis thaliana genomic DNA,...    40   0.031
CP001037_1107(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    33   2.9
FJ411411_8(FJ411411|pid:none) Acyrthosiphon pisum strain 5A mito...    28   6.3
CP000148_2678(CP000148|pid:none) Geobacter metallireducens GS-15...    32   6.4
(Q61CW2) RecName: Full=Serine/threonine-protein kinase smg-1;   ...    32   8.3

>AC115607_15(AC115607|pid:none) Dictyostelium discoideum chromosome
           2 map 4559693-4624405 strain AX4, complete sequence.
          Length = 101

 Score =  202 bits (515), Expect = 3e-51
 Identities = 100/101 (99%), Positives = 100/101 (99%)
 Frame = +2

Query: 77  MCQPVVATFKKSTVHIYRDCIRLARYIGDMNGHAKNMSKQVRIVFRTNQFEIDPKKIEEQ 256
           MCQPVVATFKKSTVHIYRDCIRLARYIGDMNGHAKNMSKQVRIVFRTNQFEIDPKKIEEQ
Sbjct: 1   MCQPVVATFKKSTVHIYRDCIRLARYIGDMNGHAKNMSKQVRIVFRTNQFEIDPKKIEEQ 60

Query: 257 KTDAVRFLTNFMQHEAERMARSQKKAASESTQTPRTRSTLD 379
           KTDAVRFLTNFMQHEAERMARSQKKAASESTQTPRTRST D
Sbjct: 61  KTDAVRFLTNFMQHEAERMARSQKKAASESTQTPRTRSTFD 101

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 540,302,798
Number of extensions: 8717259
Number of successful extensions: 22582
Number of sequences better than 10.0: 9
Number of HSP's gapped: 22578
Number of HSP's successfully gapped: 10
Length of query: 167
Length of database: 1,051,180,864
Length adjustment: 119
Effective length of query: 48
Effective length of database: 666,030,343
Effective search space: 31969456464
Effective search space used: 31969456464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.87  gvh: 0.19  alm: 0.49  top: 0.63  tms: 0.00  mit: 0.47  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall

>> prediction for Contig-U13740-1 is nuc
VS (DIR, S) 1
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0