>Contig-U13738-1 (Contig-U13738-1Q) /CSM_Contig/Contig-U13738-1Q.Seq.d
TAAATTAANTNAAATTTTAACCCCAAAAAAAAAAAAAAAAAATTTTTTTT
TCCCAAAAAAAAAAAAAAAAAACNCNTTTTTTTTTTTTTTTTNAAAATTT
TTCNNAAAAAANNNTTNNAAAAAAAANNNNNNNNN

est1=VHL860F,1,126

*IXXNFNPKKKKKKFFFPKKKKKKXXFFFFXKIFXKKXXXKKXXX

Frame A:
*IXXNFNPKKKKKKFFFPKKKKKKXXFFFFXKIFXKKXXXKKXXX


Frame B:
klxxiltpkkkkknfffpkkkkknxfffffxkffxkxxxkkxxx


Frame C:
n*xkf*pqkkkkkiffsqkkkkktxfffffxnfsxkxxxkkxxx

Query= Contig-U13738-1 (Contig-U13738-1Q)
/CSM_Contig/Contig-U13738-1Q.Seq.d
         (135 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13738-1 (Contig-U13738-1Q) /CSM_Contig/Conti...    36  0.009
Contig-U11373-1 (Contig-U11373-1Q) /CSM_Contig/Conti...    26  8.4

>Contig-U13738-1 (Contig-U13738-1Q) /CSM_Contig/Contig-U13738-1Q.Seq.d
          Length = 135

 Score = 36.2 bits (18), Expect = 0.009
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  taaattaantnaaattttaacccc 24
          ||||||||||||||||||||||||
Sbjct: 1  taaattaantnaaattttaacccc 24


>Contig-U11373-1 (Contig-U11373-1Q) /CSM_Contig/Contig-U11373-1Q.Seq.d
          Length = 1611

 Score = 26.3 bits (13), Expect = 8.4
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                       
Query: 12 aaattttaacccc 24
          |||||||||||||
Sbjct: 34 aaattttaacccc 46


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25
Number of Sequences: 6905
Number of extensions: 25
Number of successful extensions: 6
Number of sequences better than 10.0: 2
length of query: 135
length of database: 5,674,871
effective HSP length: 14
effective length of query: 121
effective length of database: 5,578,201
effective search space: 674962321
effective search space used: 674962321
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)

Query= Contig-U13738-1 (Contig-U13738-1Q) /CSM_Contig/Contig-U13738-1Q.Seq.d
         (135 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 13,670,466
Number of extensions: 522226
Number of successful extensions: 40174
Number of sequences better than 10.0: 0
Length of query: 135
Length of database: 95,242,211,685
Length adjustment: 22
Effective length of query: 113
Effective length of database: 93,199,600,587
Effective search space: 10531554866331
Effective search space used: 10531554866331
X1: 11 (21.8 bits)
S2: 20 (40.1 bits)

Query= Contig-U13738-1 (Contig-U13738-1Q) /CSM_Contig/Contig-U13738-1Q.Seq.d
         (135 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 10,933,365
Number of extensions: 2114241
Number of sequences better than 10.0: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 45
Length of database: 1,051,180,864
Length adjustment: 19
Effective length of query: 26
Effective length of database: 989,686,243
Effective search space: 25731842318
Effective search space used: 25731842318
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 25 (14.2 bits)

 psg: 0.50  gvh: 0.35  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.81  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for Contig-U13738-1 is nuc