Contig-U13707-1
Contig ID Contig-U13707-1
Contig update 2002.12.18
Contig sequence
>Contig-U13707-1 (Contig-U13707-1Q) /CSM_Contig/Contig-U13707-1Q.Seq.d
TCATTAACTTACCAACAATTAAAAGATTTTCATTCAAATCATTATCATCC
TTCAAATTCTTATTTCTTTTCCTATGGTGATTTAAATCCAATTAATCATT
TAAAATTTATAAATGATAATTCATTATCAAAATTTAAAAATAATTCAAAT
AATATTAATACAACTGTTAATAAAGTTAAACGTTGGTCAGAATCTAAAAG
AATTTATTTAAAATGTCCACCATCAGCAATGGATGTTAATCCTGAAAAGA
AATTTAAATTTTCAATTTCAATTTTACATAAAGAGAATAAAGATTTATTT
GAATCATTATCATTACATATGTTATCAAATTTATTATTAAGAGGATCAAA
TACACCAATGTATCAAGCATTATTAGAGAGTGGATTAGTTTTAGATTATT
CACCAAATACAGGTTTCGATGATGGTTTATTAGAATCAAGTTTTAGTGTT
GGTGGTATTGGTATTAAAAAAGAGGATTTAGAAAAAGTTGAAAAAGTAAT
CATAGAGACATTGGAGAAATCATCACGTGATGGGTTCGCTTCAGATGTGA
TTGAATCGNNNNNNNNN

Gap no gap
Contig length 567
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 444645
End point 444088
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U13707
List of clone(s)

est1=VHJ858F,1,558
Translated Amino Acid sequence
SLTYQQLKDFHSNHYHPSNSYFFSYGDLNPINHLKFINDNSLSKFKNNSNNINTTVNKVK
RWSESKRIYLKCPPSAMDVNPEKKFKFSISILHKENKDLFESLSLHMLSNLLLRGSNTPM
YQALLESGLVLDYSPNTGFDDGLLESSFSVGGIGIKKEDLEKVEKVIIETLEKSSRDGFA
SDVIESXXX


Translated Amino Acid sequence (All Frames)
Frame A:
SLTYQQLKDFHSNHYHPSNSYFFSYGDLNPINHLKFINDNSLSKFKNNSNNINTTVNKVK
RWSESKRIYLKCPPSAMDVNPEKKFKFSISILHKENKDLFESLSLHMLSNLLLRGSNTPM
YQALLESGLVLDYSPNTGFDDGLLESSFSVGGIGIKKEDLEKVEKVIIETLEKSSRDGFA
SDVIESXXX


Frame B:
h*ltnn*kifiqiiiilqilisfpmvi*iqlii*nl*miihyqnlkiiqiiliqllikln
vgqnlkefi*nvhhqqwmlilkrnlnfqfqfyikrikiylnhyhyicyqiyy*edqihqc
ikhy*rvd*f*iihqiqvsmmvy*nqvlvlvvlvlkkri*kklkk*s*rhwrnhhvmgsl
qm*lnrxx


Frame C:
inlptikrfsfkslssfkflflflw*fksn*sfkiyk**fiiki*k*fk*y*ync**s*t
lvri*knlfkmstisngc*s*kei*ifnfnft*re*rfi*iiiityvikfiikrikytnv
ssiirewisfrlftkyrfr*wfirikf*cwwywy*krgfrks*ksnhrdigeiit*wvrf
rcd*ixxx


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U13707-1 (Contig-U13707-1Q)
/CSM_Contig/Contig-U13707-1Q.Seq.d
(567 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U13707-1 (Contig-U13707-1Q) /CSM_Contig/Conti... 789 0.0
Contig-U10692-1 (Contig-U10692-1Q) /CSM_Contig/Conti... 42 6e-04
Contig-U08011-1 (Contig-U08011-1Q) /CSM_Contig/Conti... 36 0.040
Contig-U04354-1 (Contig-U04354-1Q) /CSM_Contig/Conti... 36 0.040
Contig-U03180-1 (Contig-U03180-1Q) /CSM_Contig/Conti... 36 0.040
Contig-U03082-1 (Contig-U03082-1Q) /CSM_Contig/Conti... 36 0.040
Contig-U14509-1 (Contig-U14509-1Q) /CSM_Contig/Conti... 34 0.16
Contig-U14255-1 (Contig-U14255-1Q) /CSM_Contig/Conti... 34 0.16
Contig-U14187-1 (Contig-U14187-1Q) /CSM_Contig/Conti... 34 0.16
Contig-U13974-1 (Contig-U13974-1Q) /CSM_Contig/Conti... 34 0.16

>Contig-U13707-1 (Contig-U13707-1Q) /CSM_Contig/Contig-U13707-1Q.Seq.d
Length = 567

Score = 789 bits (398), Expect = 0.0
Identities = 398/398 (100%)
Strand = Plus / Plus


Query: 161 caactgttaataaagttaaacgttggtcagaatctaaaagaatttatttaaaatgtccac 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 caactgttaataaagttaaacgttggtcagaatctaaaagaatttatttaaaatgtccac 220


Query: 221 catcagcaatggatgttaatcctgaaaagaaatttaaattttcaatttcaattttacata 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 catcagcaatggatgttaatcctgaaaagaaatttaaattttcaatttcaattttacata 280


Query: 281 aagagaataaagatttatttgaatcattatcattacatatgttatcaaatttattattaa 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aagagaataaagatttatttgaatcattatcattacatatgttatcaaatttattattaa 340


Query: 341 gaggatcaaatacaccaatgtatcaagcattattagagagtggattagttttagattatt 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gaggatcaaatacaccaatgtatcaagcattattagagagtggattagttttagattatt 400


Query: 401 caccaaatacaggtttcgatgatggtttattagaatcaagttttagtgttggtggtattg 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 caccaaatacaggtttcgatgatggtttattagaatcaagttttagtgttggtggtattg 460


Query: 461 gtattaaaaaagaggatttagaaaaagttgaaaaagtaatcatagagacattggagaaat 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gtattaaaaaagaggatttagaaaaagttgaaaaagtaatcatagagacattggagaaat 520


Query: 521 catcacgtgatgggttcgcttcagatgtgattgaatcg 558
||||||||||||||||||||||||||||||||||||||
Sbjct: 521 catcacgtgatgggttcgcttcagatgtgattgaatcg 558


Score = 192 bits (97), Expect = 3e-49
Identities = 97/97 (100%)
Strand = Plus / Plus


Query: 1 tcattaacttaccaacaattaaaagattttcattcaaatcattatcatccttcaaattct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcattaacttaccaacaattaaaagattttcattcaaatcattatcatccttcaaattct 60


Query: 61 tatttcttttcctatggtgatttaaatccaattaatc 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatttcttttcctatggtgatttaaatccaattaatc 97


>Contig-U10692-1 (Contig-U10692-1Q) /CSM_Contig/Contig-U10692-1Q.Seq.d
Length = 1964

Score = 42.1 bits (21), Expect = 6e-04
Identities = 24/25 (96%)
Strand = Plus / Minus


Query: 289 aaagatttatttgaatcattatcat 313
||||||||||||| |||||||||||
Sbjct: 1667 aaagatttatttggatcattatcat 1643


>Contig-U08011-1 (Contig-U08011-1Q) /CSM_Contig/Contig-U08011-1Q.Seq.d
Length = 1143

Score = 36.2 bits (18), Expect = 0.040
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 480 agaaaaagttgaaaaagt 497
||||||||||||||||||
Sbjct: 1027 agaaaaagttgaaaaagt 1044


Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 481 gaaaaagttgaaaaagt 497
|||||||||||||||||
Sbjct: 1055 gaaaaagttgaaaaagt 1071


Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 481 gaaaaagttgaaaaagt 497
|||||||||||||||||
Sbjct: 1064 gaaaaagttgaaaaagt 1080


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,938
Number of Sequences: 6905
Number of extensions: 12938
Number of successful extensions: 1727
Number of sequences better than 10.0: 527
length of query: 567
length of database: 5,674,871
effective HSP length: 16
effective length of query: 551
effective length of database: 5,564,391
effective search space: 3065979441
effective search space used: 3065979441
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12.13
Homology vs DNA
Query= Contig-U13707-1 (Contig-U13707-1Q) /CSM_Contig/Contig-U13707-1Q.Seq.d
(567 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ423823) Dictyostelium discoideum cDNA clone:ddv50d16, 5' ... 747 0.0 2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 650 0.0 3
(AC168218) Mus musculus BAC clone RP24-236K20 from chromosom... 50 0.087 1
(AZ349192) 1M0086P04F Mouse 10kb plasmid UUGC1M library Mus ... 50 0.087 1
(ER524131) 1093015615105 Global-Ocean-Sampling_GS-35-01-01-1... 50 0.087 1
(CU138564) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.13 4
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 48 0.20 8
(AM440526) Vitis vinifera contig VV78X101109.2, whole genome... 32 0.25 4
(AC181049) Strongylocentrotus purpuratus clone R3-3050K15, W... 48 0.34 1
(AG600107) Mus musculus molossinus DNA, clone:MSMg01-531M16.... 48 0.34 1
(CG687290) ZMMBBc0164B24f ZMMBBc (EcoRI) Zea mays subsp. may... 48 0.34 1
(FC816055) Sr_pAMT7_04p18_T7 S. ratti mixed stage pAMP Stron... 48 0.34 1
(FC810621) Sr_pASP6_04p18_SP6 S. ratti mixed stage pAMP Stro... 48 0.34 1
(FC809529) Sr_pASP6_01f02_SP6 S. ratti mixed stage pAMP Stro... 48 0.34 1
(FC809516) Sr_pASP6_01e11_SP6 S. ratti mixed stage pAMP Stro... 48 0.34 1
(FC809468) Sr_pASP6_01c04_SP6 S. ratti mixed stage pAMP Stro... 48 0.34 1
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117... 40 0.35 5
(AC131485) Lytechinus variegatus clone Lv183H12, *** SEQUENC... 36 0.38 5
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete... 36 0.45 15
(AY352277) Apis mellifera complementary sex determiner (csd)... 38 0.48 3
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 36 0.68 8
(EK381605) 1095469464050 Global-Ocean-Sampling_GS-31-01-01-1... 42 0.69 2
(EK402447) 1095469545663 Global-Ocean-Sampling_GS-31-01-01-1... 44 0.70 2
(ER597316) 1093016227054 Global-Ocean-Sampling_GS-36-01-01-2... 38 0.75 2
(EK256051) 1095462011186 Global-Ocean-Sampling_GS-31-01-01-1... 34 0.79 3
(AE017245) Mycoplasma synoviae 53, complete genome. 36 0.81 10
(EU233858) Chilobrachys jingzhao cystine knot toxin (JZTX-49... 32 0.97 2
(AC214212) Populus trichocarpa clone POP019-D08, complete se... 38 1.0 3
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 30 1.2 13
(AC153020) Mus musculus BAC clone RP23-88P1 from chromosome ... 46 1.4 1
(AC139381) Mus musculus BAC clone RP23-171D1 from 13, comple... 46 1.4 1
(AM487835) Vitis vinifera, whole genome shotgun sequence, co... 46 1.4 1
(AC181309) Strongylocentrotus purpuratus clone R3-4017H24, W... 46 1.4 1
(ER606190) 1093016277854 Global-Ocean-Sampling_GS-36-01-01-2... 46 1.4 1
(EK367424) 1095469403394 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.4 1
(CD567238) tab50a03.x1 Hydra EST -III Hydra magnipapillata c... 46 1.4 1
(AE001437) Clostridium acetobutylicum ATCC 824, complete gen... 46 1.4 1
(AC219214) Solanum lycopersicum chromosome 6 clone C06HBa015... 38 1.4 3
(CP000576) Prochlorococcus marinus str. MIT 9301, complete g... 34 1.5 15
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 32 1.5 11
(AM473345) Vitis vinifera, whole genome shotgun sequence, co... 44 1.5 4
(AC217577) Zea mays chromosome 9 clone CH201-289L13; ZMMBBc0... 42 1.8 2
(D31785) Pichia canadensis mitochondrial genomic DNA, comple... 36 1.8 4
(AX344552) Sequence 3 from Patent WO0200932. 36 1.8 8
(CP000551) Prochlorococcus marinus str. AS9601, complete gen... 34 1.9 13
(CS374669) Sequence 772 from Patent WO2006034879. 38 1.9 3
(CS374397) Sequence 500 from Patent WO2006034879. 38 1.9 3
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 36 2.4 13
(EK176392) 1095458099443 Global-Ocean-Sampling_GS-31-01-01-1... 40 2.5 2
(FH538415) CHO_OF4770xc20r1.ab1 CHO_OF4 Nicotiana tabacum ge... 36 2.5 3
(FH384325) CHO_OF4747xf04r1.ab1 CHO_OF4 Nicotiana tabacum ge... 36 2.6 3
(AF067844) Homo sapiens chromosome 10 clone PTEN, complete s... 34 2.6 2
(AC219410) Bos taurus clone CH240-339I18, WORKING DRAFT SEQU... 32 2.6 2
(AC063965) Homo sapiens chromosome 10 clone RP11-380G5, comp... 34 2.6 2
(AC231049) Bos taurus clone CH240-492D20, WORKING DRAFT SEQU... 32 2.6 2
(AC207216) Pongo abelii BAC clone CH276-180A1 from chromosom... 32 2.6 2
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 42 2.8 8
(AC096179) Rattus norvegicus clone CH230-50G12, WORKING DRAF... 42 3.0 5
(DQ366717) Uncultured Prochlorococcus marinus clone ASNC3046... 36 3.1 3
(EC820494) SME00005206 esmbsro2 Sawyeria marylandensis cDNA,... 30 3.3 3
(AC068308) Homo sapiens 3 BAC RP11-275H4 (Roswell Park Cance... 44 3.5 3
(EJ860051) 1093017970283 Global-Ocean-Sampling_GS-30-02-01-1... 32 3.5 2
(EJ479002) 1095403458519 Global-Ocean-Sampling_GS-28-01-01-1... 34 3.5 2
(ED169802) AUAC-aap83f02.b1 Ascaris suum whole genome shotgu... 34 3.5 2
(EJ983502) 1093022170350 Global-Ocean-Sampling_GS-30-02-01-1... 32 3.6 2
(EI794983) CHORI518023F15TR BAC library from the breast cell... 34 3.6 2
(AC126784) Medicago truncatula chromosome 8 clone mth2-36b12... 38 3.6 5
(EC821101) SME00007235 esmbsro2 Sawyeria marylandensis cDNA,... 30 3.9 3
(AC125473) Medicago truncatula clone mth2-8j13, complete seq... 38 4.2 4
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693... 38 4.3 4
(CT573691) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 4.5 4
(EC821719) SME00004818 esmbsro2 Sawyeria marylandensis cDNA,... 30 4.5 3
(EC822020) SME00005467 esmbsro2 Sawyeria marylandensis cDNA,... 30 4.9 3
(AL669929) Mouse DNA sequence from clone RP23-197J15 on chro... 34 4.9 5
(AM474948) Vitis vinifera, whole genome shotgun sequence, co... 42 5.1 4
(AC126014) Medicago truncatula clone mth2-18j5, complete seq... 38 5.2 4
(AC011235) Homo sapiens BAC clone RP11-295A19 from 2, comple... 42 5.2 4
(BX890540) Zebrafish DNA sequence from clone DKEY-211C3 in l... 44 5.4 1
(BX005166) Zebrafish DNA sequence from clone CH211-137K18 in... 44 5.4 1
(AP007241) Anguilla interioris mitochondrial DNA, complete g... 44 5.4 1
(AP007237) Anguilla bicolor pacifica mitochondrial DNA, comp... 44 5.4 1
(AP007236) Anguilla bicolor bicolor mitochondrial DNA, compl... 44 5.4 1
(AC166142) Xenopus tropicalis clone CH216-61H19, complete se... 44 5.4 1
(AC145802) Xenopus tropicalis clone CH216-80C17, complete se... 44 5.4 1
(AC122807) Mus musculus BAC clone RP23-297H3 from 8, complet... 44 5.4 1
(X83987) B.madagascariensis chloroplast rbcL gene, promoter ... 44 5.4 1
(EF523514) Puccinia psidii clone 208_M13R-H11 microsatellite... 44 5.4 1
(EF523506) Puccinia psidii clone 080_M13R-H07 microsatellite... 44 5.4 1
(EF523502) Puccinia psidii clone ShaoR14 microsatellite sequ... 44 5.4 1
(AC223438) Oryza brachyantha, complete sequence. 44 5.4 1
(AC144538) Medicago truncatula clone mth2-31l21, complete se... 44 5.4 1
(AC005623) Arabidopsis thaliana chromosome 2 clone T20P8 map... 44 5.4 1
(AE014296) Drosophila melanogaster chromosome 3L, complete s... 44 5.4 1
(AC010565) Drosophila melanogaster 3L BAC RP98-19A3 (Roswell... 44 5.4 1
(AC093610) Homo sapiens BAC clone RP11-725F23 from 2, comple... 44 5.4 1
(AC162748) Loxodonta africana clone VMRC15-411B16, WORKING D... 44 5.4 1
(AC162196) Bos taurus clone CH240-117E15, WORKING DRAFT SEQU... 44 5.4 1
(AC161730) Loxodonta africana clone VMRC15-481O14, WORKING D... 44 5.4 1
(AC127821) Rattus norvegicus clone CH230-263L15, WORKING DRA... 44 5.4 1
(AC119668) Rattus norvegicus clone CH230-56J3, *** SEQUENCIN... 44 5.4 1

>(BJ423823) Dictyostelium discoideum cDNA clone:ddv50d16, 5' end,
single read.
Length = 558

Score = 747 bits (377), Expect(2) = 0.0
Identities = 377/377 (100%)
Strand = Plus / Plus


Query: 181 cgttggtcagaatctaaaagaatttatttaaaatgtccaccatcagcaatggatgttaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgttggtcagaatctaaaagaatttatttaaaatgtccaccatcagcaatggatgttaat 240


Query: 241 cctgaaaagaaatttaaattttcaatttcaattttacataaagagaataaagatttattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cctgaaaagaaatttaaattttcaatttcaattttacataaagagaataaagatttattt 300


Query: 301 gaatcattatcattacatatgttatcaaatttattattaagaggatcaaatacaccaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaatcattatcattacatatgttatcaaatttattattaagaggatcaaatacaccaatg 360


Query: 361 tatcaagcattattagagagtggattagttttagattattcaccaaatacaggtttcgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tatcaagcattattagagagtggattagttttagattattcaccaaatacaggtttcgat 420


Query: 421 gatggtttattagaatcaagttttagtgttggtggtattggtattaaaaaagaggattta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gatggtttattagaatcaagttttagtgttggtggtattggtattaaaaaagaggattta 480


Query: 481 gaaaaagttgaaaaagtaatcatagagacattggagaaatcatcacgtgatgggttcgct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gaaaaagttgaaaaagtaatcatagagacattggagaaatcatcacgtgatgggttcgct 540


Query: 541 tcagatgtgattgaatc 557
|||||||||||||||||
Sbjct: 541 tcagatgtgattgaatc 557

Score = 157 bits (79), Expect(2) = 0.0
Identities = 79/79 (100%)
Strand = Plus / Plus


Query: 1 tcattaacttaccaacaattaaaagattttcattcaaatcattatcatccttcaaattct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcattaacttaccaacaattaaaagattttcattcaaatcattatcatccttcaaattct 60


Query: 61 tatttcttttcctatggtg 79
|||||||||||||||||||
Sbjct: 61 tatttcttttcctatggtg 79

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 671,386,063
Number of extensions: 44475535
Number of successful extensions: 4133519
Number of sequences better than 10.0: 202
Length of query: 567
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 544
Effective length of database: 93,106,754,628
Effective search space: 50650074517632
Effective search space used: 50650074517632
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 8
Homology vs Protein
Query= Contig-U13707-1 (Contig-U13707-1Q) /CSM_Contig/Contig-U13707-1Q.Seq.d
(567 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC116982_5(AC116982|pid:none) Dictyostelium discoideum chromosom... 288 5e-77
(Q28BR5) RecName: Full=Presequence protease, mitochondrial; ... 113 4e-24
BC154673_1(BC154673|pid:none) Xenopus tropicalis pitrilysin meta... 113 4e-24
AL451164_9(AL451164|pid:none) Human DNA sequence from clone RP11... 110 2e-23
(Q9BVJ5) RecName: Full=Presequence protease, mitochondrial; ... 110 3e-23
AK294865_1(AK294865|pid:none) Homo sapiens cDNA FLJ53321 complet... 110 3e-23
(Q5RDG3) RecName: Full=Presequence protease, mitochondrial; ... 110 3e-23
BC005025_1(BC005025|pid:none) Homo sapiens pitrilysin metallopep... 110 3e-23
AK141277_1(AK141277|pid:none) Mus musculus 7 days embryo whole b... 109 6e-23
AK164235_1(AK164235|pid:none) Mus musculus 9 days embryo whole b... 108 8e-23
AK129292_1(AK129292|pid:none) Mus musculus mRNA for mKIAA1104 pr... 108 8e-23
AY779273_1(AY779273|pid:none) Mus musculus strain LG/J pitrilysi... 108 8e-23
AY779274_1(AY779274|pid:none) Mus musculus strain SM/J pitrilysi... 108 8e-23
AK167426_1(AK167426|pid:none) Mus musculus 14 days pregnant adul... 108 8e-23
AF061243_1(AF061243|pid:none) Homo sapiens metalloprotease 1 (MP... 103 4e-21
(Q7S7C0) RecName: Full=Mitochondrial presequence protease; ... 99 6e-20
CP000859_2864(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 99 1e-19
(Q6C0U8) RecName: Full=Mitochondrial presequence protease; ... 97 4e-19
AJ006754_1(AJ006754|pid:none) Yarrowia lipolytica URA5-SEC65 gen... 97 4e-19
GN099664_1(GN099664|pid:none) Sequence 4445 from Patent WO200903... 84 3e-15
CP000142_747(CP000142|pid:none) Pelobacter carbinolicus DSM 2380... 82 1e-14
CU329671_282(CU329671|pid:none) Schizosaccharomyces pombe chromo... 82 1e-14
AP000419_7(AP000419|pid:none) Arabidopsis thaliana genomic DNA, ... 81 2e-14
A96533(A96533)probable zinc metalloproteinase [imported] - Arabi... 79 9e-14
AC011807_14(AC011807|pid:none) Arabidopsis thaliana chromosome I... 79 1e-13
(Q8VY06) RecName: Full=Presequence protease 2, chloroplastic/mit... 79 1e-13
(Q2UGN1) RecName: Full=Mitochondrial presequence protease; ... 79 1e-13
(Q4WP38) RecName: Full=Mitochondrial presequence protease; ... 79 1e-13
CP001575_196(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 75 9e-13
CP001322_3100(CP001322|pid:none) Desulfatibacillum alkenivorans ... 74 3e-12
GN099656_1(GN099656|pid:none) Sequence 4437 from Patent WO200903... 72 1e-11
CP000934_1605(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 72 1e-11
AM920428_745(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 71 2e-11
AM270071_53(AM270071|pid:none) Aspergillus niger contig An04c010... 71 2e-11
FN357401_3(FN357401|pid:none) Schistosoma mansoni genome sequenc... 71 2e-11
(Q9V9E3) RecName: Full=Presequence protease, mitochondrial; ... 68 2e-10
AM457663_2(AM457663|pid:none) Vitis vinifera contig VV78X067479.... 67 3e-10
(Q6BTC0) RecName: Full=Mitochondrial presequence protease; ... 65 2e-09
CP000939_3308(CP000939|pid:none) Clostridium botulinum B1 str. O... 65 2e-09
CP000728_3287(CP000728|pid:none) Clostridium botulinum F str. La... 65 2e-09
CP001581_3514(CP001581|pid:none) Clostridium botulinum A2 str. K... 64 2e-09
CP000962_3292(CP000962|pid:none) Clostridium botulinum A3 str. L... 64 3e-09
CT005246_11(CT005246|pid:none) Leishmania major strain Friedlin,... 64 3e-09
CP000593_30(CP000593|pid:none) Ostreococcus lucimarinus CCE9901 ... 63 5e-09
AL110506_1(AL110506|pid:none) S.pombe chromosome II cosmid c577. 63 5e-09
CP000496_802(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 63 5e-09
CP001326_29(CP001326|pid:none) Micromonas sp. RCC299 chromosome ... 63 6e-09
AE017285_937(AE017285|pid:none) Desulfovibrio vulgaris subsp. vu... 60 3e-08
AE015927_693(AE015927|pid:none) Clostridium tetani E88, complete... 60 3e-08
CU928176_550(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 60 3e-08
CP001114_585(CP001114|pid:none) Deinococcus deserti VCD115, comp... 60 5e-08
(Q6CWW6) RecName: Full=Mitochondrial presequence protease; ... 60 5e-08
AM180252_649(AM180252|pid:none) Lawsonia intracellularis PHE/MN1... 59 7e-08
CP000724_1634(CP000724|pid:none) Alkaliphilus metalliredigens QY... 58 2e-07
CP001358_339(CP001358|pid:none) Desulfovibrio desulfuricans subs... 58 2e-07
CP001614_1606(CP001614|pid:none) Teredinibacter turnerae T7901, ... 57 3e-07
CP000853_1909(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,... 55 1e-06
(Q5A301) RecName: Full=Mitochondrial presequence protease; ... 55 2e-06
AP010904_4310(AP010904|pid:none) Desulfovibrio magneticus RS-1 D... 54 3e-06
CP000282_1853(CP000282|pid:none) Saccharophagus degradans 2-40, ... 54 4e-06
CP000127_1982(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 54 4e-06
CP000382_1808(CP000382|pid:none) Clostridium novyi NT, complete ... 53 7e-06
(Q6FUI7) RecName: Full=Mitochondrial presequence protease; ... 53 7e-06
CP000382_770(CP000382|pid:none) Clostridium novyi NT, complete g... 53 7e-06
AE000520_24(AE000520|pid:none) Treponema pallidum subsp. pallidu... 52 1e-05
AL451164_14(AL451164|pid:none) Human DNA sequence from clone RP1... 51 2e-05
CP000155_2027(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 51 2e-05
CP000246_1622(CP000246|pid:none) Clostridium perfringens ATCC 13... 50 3e-05
AE001437_2960(AE001437|pid:none) Clostridium acetobutylicum ATCC... 50 3e-05
(Q46205) RecName: Full=Protein hypA; &BA000016_1402(BA000016|pi... 50 3e-05
AM502225_39(AM502225|pid:none) Leishmania infantum chromosome 7. 50 4e-05
CP001107_1805(CP001107|pid:none) Eubacterium rectale ATCC 33656,... 49 7e-05
CP000724_1028(CP000724|pid:none) Alkaliphilus metalliredigens QY... 49 1e-04
(Q759T9) RecName: Full=Mitochondrial presequence protease; ... 48 2e-04
AM910993_100(AM910993|pid:none) Plasmodium knowlesi strain H chr... 47 5e-04
AP009049_394(AP009049|pid:none) Clostridium kluyveri NBRC 12016 ... 45 0.001
AP006861_233(AP006861|pid:none) Chlamydophila felis Fe/C-56 DNA,... 44 0.002
A97104(A97104) Zn-dependent metalloprotease, insulinase family [... 44 0.003
BX908798_1271(BX908798|pid:none) Parachlamydia-related symbiont ... 44 0.004
AP009049_631(AP009049|pid:none) Clostridium kluyveri NBRC 12016 ... 44 0.004
CU466930_33(CU466930|pid:none) Candidatus Cloacamonas acidaminov... 43 0.005
A72012(A72012;F81528) metalloproteinase, insulinase family CP087... 42 0.009
CR543861_1233(CR543861|pid:none) Acinetobacter sp. ADP1 complete... 42 0.012
CP000514_1859(CP000514|pid:none) Marinobacter aquaeolei VT8, com... 42 0.015
CP000323_2122(CP000323|pid:none) Psychrobacter cryohalolentis K5... 41 0.020
B86613(B86613) zinc metalloproteinase [imported] - Chlamydophila... 41 0.020
CP000521_2116(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 40 0.044
CP000395_229(CP000395|pid:none) Borrelia afzelii PKo, complete g... 40 0.044
CU468230_1972(CU468230|pid:none) Acinetobacter baumannii str. SD... 40 0.044
CP001104_1307(CP001104|pid:none) Eubacterium eligens ATCC 27750,... 40 0.044
CP000863_2031(CP000863|pid:none) Acinetobacter baumannii ACICU, ... 40 0.044
CP001172_1492(CP001172|pid:none) Acinetobacter baumannii AB307-0... 40 0.044
AE002160_204(AE002160|pid:none) Chlamydia muridarum Nigg, comple... 40 0.057
CP000013_226(CP000013|pid:none) Borrelia garinii PBi, complete g... 40 0.057
AF404306_3(AF404306|pid:none) Rhizophydium sp. 136 mitochondrion... 39 0.13
CP000713_1823(CP000713|pid:none) Psychrobacter sp. PRwf-1, compl... 39 0.13
A71466(A71466) probable zinc metalloproteinase (insulinase famil... 38 0.17
AY811471_1(AY811471|pid:none) Schistosoma japonicum SJCHGC04038 ... 37 0.37
EF017300_1(EF017300|pid:none) Moraxella catarrhalis strain O35E ... 36 0.83
CP001205_217(CP001205|pid:none) Borrelia burgdorferi ZS7, comple... 35 1.4
FJ464558_1(FJ464558|pid:none) Solanum lycopersicum cultivar Crai... 32 9.0
AL035475_30(AL035475|pid:none) Plasmodium falciparum MAL4P2. &A... 32 9.0
FJ464560_1(FJ464560|pid:none) Solanum lycopersicum cultivar Mone... 32 9.0
FJ809919_1(FJ809919|pid:none) Solanum lycopersicum cultivar Peto... 32 9.0

>AC116982_5(AC116982|pid:none) Dictyostelium discoideum chromosome 2
map 3622643-3879522 strain AX4, complete sequence.
Length = 1066

Score = 288 bits (738), Expect = 5e-77
Identities = 148/186 (79%), Positives = 148/186 (79%)
Frame = +1

Query: 1 SLTYQQLKDFHSNHYHPSNSYFFSYGDLNPINHLKFIXXXXXXXXXXXXXXXXXXXXXXX 180
SLTYQQLKDFHSNHYHPSNSYFFSYGDLNPINHLKFI
Sbjct: 296 SLTYQQLKDFHSNHYHPSNSYFFSYGDLNPINHLKFINDNSLSKFKNNSNNINTTVNKVK 355

Query: 181 RWSESKRIYLKCPPSAMDVNPEKKFKFSISILHKENKDLFEXXXXXXXXXXXXXXXNTPM 360
RWSESKRIYLKCPPSAMDVNPEKKFKFSISILHKENKDLFE NTPM
Sbjct: 356 RWSESKRIYLKCPPSAMDVNPEKKFKFSISILHKENKDLFESLSLHMLSNLLLRGSNTPM 415

Query: 361 YQALLESGLVLDYSPNTGFDDGLLESSFSVGGIGIKKEDLEKVEKVIIETLEKSSRDGFA 540
YQALLESGLVLDYSPNTGFDDGLLESSFSVGGIGIKKEDLEKVEKVIIETLEKSSRDGFA
Sbjct: 416 YQALLESGLVLDYSPNTGFDDGLLESSFSVGGIGIKKEDLEKVEKVIIETLEKSSRDGFA 475

Query: 541 SDVIES 558
SDVIES
Sbjct: 476 SDVIES 481

Lambda K H
0.315 0.135 0.391

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 621,152,526
Number of extensions: 10013164
Number of successful extensions: 26768
Number of sequences better than 10.0: 104
Number of HSP's gapped: 26685
Number of HSP's successfully gapped: 124
Length of query: 189
Length of database: 1,051,180,864
Length adjustment: 121
Effective length of query: 68
Effective length of database: 659,557,225
Effective search space: 44849891300
Effective search space used: 44849891300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.79 gvh: 0.25 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for Contig-U13707-1 is nuc

VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0