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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13698-1
Contig ID Contig-U13698-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13698-1 (Contig-U13698-1Q) /CSM_Contig/Contig-U13698-1Q.Seq.d
GTGAAACAATTTTTAATTGAAACTAGACAATTTTTAACTAAAATGATTAA
AATCGTTAATATCAAAGAGGAGGTATTGGTCAATCTTTCAGTTTGTGCCG
ATATGTCATATGCATGGGAAATCGTTAATAACTATGTCGATCAAATGCAA
AAGGGTATTAAATCCGATCCAAAATGTGTACTAAAACTTCGTGCCACCTT
TTTGAAATTAGTATCAATTCTCGATTTACCATTGGTTAGAATCGCTCAAT
GTTCATCACCCGATCTTATATCGGTATCAGAGTATTACTCTGGTGAATTG
GTTGGTTATGTTAGAAAGGTATTGGAAATCGTACCAAAACAAATGTTTTT
AATCTTAAAACAAATCATTAATATGCAAACTAATAATATTCAAGAGATGC
CAACAAAAGTTGAGAAAGAGAGATTAAGAGATTTCGCTCAATTGGATCAA
AGATACGATTTGGCAAGAGCAACCCATTCAGTATCGGTTTTCACTGAGGG
TATTCTAGCAATGGAGACAACATTGGTTGGTATCATTGAAGTCGATCCAA
AACAATTACTCGAGGATGGTATTCGTAAGGAGTTGGTATTACAAATTGCA
TTGGCAATGGATAAAACATTGATTTTCAGTNNNNNNNNN
Gap no gap
Contig length 639
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1672080
End point 1671451
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U13698
List of clone(s) 

est1=VHJ438F,1,630
Translated Amino Acid sequence 
VKQFLIETRQFLTKMIKIVNIKEEVLVNLSVCADMSYAWEIVNNYVDQMQKGIKSDPKCV
LKLRATFLKLVSILDLPLVRIAQCSSPDLISVSEYYSGELVGYVRKVLEIVPKQMFLILK
QIINMQTNNIQEMPTKVEKERLRDFAQLDQRYDLARATHSVSVFTEGILAMETTLVGIIE
VDPKQLLEDGIRKELVLQIALAMDKTLIFSXXX
Translated Amino Acid sequence (All Frames) 
Frame A:
VKQFLIETRQFLTKMIKIVNIKEEVLVNLSVCADMSYAWEIVNNYVDQMQKGIKSDPKCV
LKLRATFLKLVSILDLPLVRIAQCSSPDLISVSEYYSGELVGYVRKVLEIVPKQMFLILK
QIINMQTNNIQEMPTKVEKERLRDFAQLDQRYDLARATHSVSVFTEGILAMETTLVGIIE
VDPKQLLEDGIRKELVLQIALAMDKTLIFSXXX


Frame B:
*nnf*lkldnf*lk*lksliskrrywsifqfvpichmhgkslitmsikckrvlnpiqnvy
*nfvppf*n*yqfsiyhwleslnvhhpilyryqsitlvnwlvmlerywksyqnkcf*s*n
kslickliifkrcqqklrkrd*eislnwikdtiwqeqpiqyrfslrvf*qwrqhwlvslk
siqnnysrmvfvrswyyklhwqwikh*fsvxx


Frame C:
etifn*n*tifn*nd*nr*yqrggigqsfslcryvicmgnr**lcrsnakgy*irskmct
ktschlfeisinsrftig*nrsmfitrsyigirvllw*igwlc*kgignrtktnvfnlkt
nh*yan**ysrdanks*ereikrfrsigskirfgksnpfsigfh*gyssngdnigwyh*s
rsktitrgwys*gvgitncigng*nidfqxxx
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13698-1 (Contig-U13698-1Q)
/CSM_Contig/Contig-U13698-1Q.Seq.d
         (639 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13698-1 (Contig-U13698-1Q) /CSM_Contig/Conti...  1249  0.0
Contig-U11130-1 (Contig-U11130-1Q) /CSM_Contig/Conti...    36  0.045
Contig-U12529-1 (Contig-U12529-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U12427-1 (Contig-U12427-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U12072-1 (Contig-U12072-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U11669-1 (Contig-U11669-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U11464-1 (Contig-U11464-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U04436-1 (Contig-U04436-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U14857-1 (Contig-U14857-1Q) /CSM_Contig/Conti...    32  0.70
Contig-U13083-1 (Contig-U13083-1Q) /CSM_Contig/Conti...    32  0.70

>Contig-U13698-1 (Contig-U13698-1Q) /CSM_Contig/Contig-U13698-1Q.Seq.d
          Length = 639

 Score = 1249 bits (630), Expect = 0.0
 Identities = 630/630 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgaaacaatttttaattgaaactagacaatttttaactaaaatgattaaaatcgttaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtgaaacaatttttaattgaaactagacaatttttaactaaaatgattaaaatcgttaat 60

                                                                       
Query: 61  atcaaagaggaggtattggtcaatctttcagtttgtgccgatatgtcatatgcatgggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atcaaagaggaggtattggtcaatctttcagtttgtgccgatatgtcatatgcatgggaa 120

                                                                       
Query: 121 atcgttaataactatgtcgatcaaatgcaaaagggtattaaatccgatccaaaatgtgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atcgttaataactatgtcgatcaaatgcaaaagggtattaaatccgatccaaaatgtgta 180

                                                                       
Query: 181 ctaaaacttcgtgccacctttttgaaattagtatcaattctcgatttaccattggttaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctaaaacttcgtgccacctttttgaaattagtatcaattctcgatttaccattggttaga 240

                                                                       
Query: 241 atcgctcaatgttcatcacccgatcttatatcggtatcagagtattactctggtgaattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atcgctcaatgttcatcacccgatcttatatcggtatcagagtattactctggtgaattg 300

                                                                       
Query: 301 gttggttatgttagaaaggtattggaaatcgtaccaaaacaaatgtttttaatcttaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gttggttatgttagaaaggtattggaaatcgtaccaaaacaaatgtttttaatcttaaaa 360

                                                                       
Query: 361 caaatcattaatatgcaaactaataatattcaagagatgccaacaaaagttgagaaagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caaatcattaatatgcaaactaataatattcaagagatgccaacaaaagttgagaaagag 420

                                                                       
Query: 421 agattaagagatttcgctcaattggatcaaagatacgatttggcaagagcaacccattca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agattaagagatttcgctcaattggatcaaagatacgatttggcaagagcaacccattca 480

                                                                       
Query: 481 gtatcggttttcactgagggtattctagcaatggagacaacattggttggtatcattgaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtatcggttttcactgagggtattctagcaatggagacaacattggttggtatcattgaa 540

                                                                       
Query: 541 gtcgatccaaaacaattactcgaggatggtattcgtaaggagttggtattacaaattgca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gtcgatccaaaacaattactcgaggatggtattcgtaaggagttggtattacaaattgca 600

                                         
Query: 601 ttggcaatggataaaacattgattttcagt 630
           ||||||||||||||||||||||||||||||
Sbjct: 601 ttggcaatggataaaacattgattttcagt 630


>Contig-U11130-1 (Contig-U11130-1Q) /CSM_Contig/Contig-U11130-1Q.Seq.d
          Length = 1937

 Score = 36.2 bits (18), Expect = 0.045
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 61  atcaaagaggaggtattg 78
           ||||||||||||||||||
Sbjct: 920 atcaaagaggaggtattg 937


>Contig-U12529-1 (Contig-U12529-1Q) /CSM_Contig/Contig-U12529-1Q.Seq.d
          Length = 1482

 Score = 34.2 bits (17), Expect = 0.18
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 437 ctcaattggatcaaaga 453
           |||||||||||||||||
Sbjct: 809 ctcaattggatcaaaga 825


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6790
Number of Sequences: 6905
Number of extensions: 6790
Number of successful extensions: 673
Number of sequences better than 10.0: 60
length of query: 639
length of database: 5,674,871
effective HSP length: 16
effective length of query: 623
effective length of database: 5,564,391
effective search space: 3466615593
effective search space used: 3466615593
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.13
Homology vs DNA 
Query= Contig-U13698-1 (Contig-U13698-1Q) /CSM_Contig/Contig-U13698-1Q.Seq.d
         (639 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ423498) Dictyostelium discoideum cDNA clone:ddv49l10, 5' ...  1249   0.0    1
(AC020740) Homo sapiens BAC clone RP11-795O2 from 4, complet...    48   0.39   1
(BH990426) oei79d09.g1 B.oleracea002 Brassica oleracea genom...    48   0.39   1
(FC675648) CAXX10831.fwd CAXX Lottia gigantea from male gona...    48   0.39   1
(BJ378950) Dictyostelium discoideum cDNA clone:ddc33h07, 3' ...    32   0.90   3
(BJ441233) Dictyostelium discoideum cDNA clone:ddv46h02, 3' ...    32   1.00   3
(BJ438607) Dictyostelium discoideum cDNA clone:ddv37n12, 3' ...    32   1.00   3
(BJ407666) Dictyostelium discoideum cDNA clone:dds43c09, 3' ...    32   1.0    3
(BJ355360) Dictyostelium discoideum cDNA clone:dda56f14, 3' ...    32   1.0    3
(BJ407758) Dictyostelium discoideum cDNA clone:dds43e17, 3' ...    32   1.0    3
(BJ352620) Dictyostelium discoideum cDNA clone:dda47h07, 3' ...    32   1.0    3
(BJ408675) Dictyostelium discoideum cDNA clone:dds46h15, 3' ...    32   1.0    3
(BJ355610) Dictyostelium discoideum cDNA clone:dda57l15, 3' ...    32   1.0    3
(BJ348992) Dictyostelium discoideum cDNA clone:dda35c06, 3' ...    32   1.0    3
(BJ350734) Dictyostelium discoideum cDNA clone:dda40h22, 3' ...    32   1.1    3
(BJ406077) Dictyostelium discoideum cDNA clone:dds34g04, 3' ...    32   1.1    3
(BJ404880) Dictyostelium discoideum cDNA clone:dds29m20, 3' ...    32   1.1    3
(BJ408929) Dictyostelium discoideum cDNA clone:dds47n10, 3' ...    32   1.1    3
(BJ403362) Dictyostelium discoideum cDNA clone:dds24k22, 3' ...    32   1.1    3
(BJ353564) Dictyostelium discoideum cDNA clone:dda50m13, 3' ...    32   1.1    3
(BJ356289) Dictyostelium discoideum cDNA clone:dda59i22, 3' ...    32   1.1    3
(BJ356392) Dictyostelium discoideum cDNA clone:dda60m03, 3' ...    32   1.1    3
(BJ352436) Dictyostelium discoideum cDNA clone:dda46a24, 3' ...    32   1.2    3
(BJ445149) Dictyostelium discoideum cDNA clone:ddv58h14, 3' ...    32   1.2    3
(BJ352594) Dictyostelium discoideum cDNA clone:dda47c08, 3' ...    32   1.2    3
(BJ348000) Dictyostelium discoideum cDNA clone:dda31j20, 3' ...    32   1.3    3
(BJ353114) Dictyostelium discoideum cDNA clone:dda49d05, 3' ...    32   1.4    3
(BJ444790) Dictyostelium discoideum cDNA clone:ddv57p09, 3' ...    32   1.4    3
(BJ408125) Dictyostelium discoideum cDNA clone:dds44d21, 3' ...    32   1.4    3
(BJ407887) Dictyostelium discoideum cDNA clone:dds43p24, 3' ...    32   1.4    3
(BJ403114) Dictyostelium discoideum cDNA clone:dds24i02, 3' ...    32   1.4    3
(AL035610) Homo sapiens chromosome 21 PAC LLNLP704M17648Q13.       40   1.4    3
(BJ351907) Dictyostelium discoideum cDNA clone:dda45b01, 3' ...    32   1.4    3
(BJ406346) Dictyostelium discoideum cDNA clone:dds34p19, 3' ...    32   1.5    3
(CU457430) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.5    1
(ET400995) S0266I21_T7 CHORI-214 Salmo salar genomic clone S...    46   1.5    1
(ET347697) S0250P10_T7 CHORI-214 Salmo salar genomic clone S...    46   1.5    1
(ET316541) S0126F08_SP6 CHORI-214 Salmo salar genomic clone ...    46   1.5    1
(EG802671) EST_ssal_evd_59186 ssalevd thymus Salmo salar cDN...    46   1.5    1
(EG802670) EST_ssal_evd_59185 ssalevd thymus Salmo salar cDN...    46   1.5    1
(BJ405214) Dictyostelium discoideum cDNA clone:dds30o21, 3' ...    32   1.6    3
(BJ349107) Dictyostelium discoideum cDNA clone:dda35l09, 3' ...    32   1.6    3
(BJ385200) Dictyostelium discoideum cDNA clone:ddc54m02, 3' ...    32   1.6    3
(BJ354371) Dictyostelium discoideum cDNA clone:dda53l09, 3' ...    32   1.7    3
(BJ443822) Dictyostelium discoideum cDNA clone:ddv54a10, 3' ...    32   1.9    3
(BJ350144) Dictyostelium discoideum cDNA clone:dda38j22, 3' ...    32   2.1    3
(BJ440074) Dictyostelium discoideum cDNA clone:ddv42f13, 3' ...    32   2.2    3
(BJ352113) Dictyostelium discoideum cDNA clone:dda45m17, 3' ...    32   2.4    3
(AC221711) Bos taurus clone CH240-388C15, WORKING DRAFT SEQU...    42   2.4    2
(BJ446023) Dictyostelium discoideum cDNA clone:ddv61l07, 3' ...    32   2.4    3
(BJ355626) Dictyostelium discoideum cDNA clone:dda57o18, 3' ...    32   2.4    3
(BJ442766) Dictyostelium discoideum cDNA clone:ddv50l23, 3' ...    32   2.4    3
(CE253657) tigr-gss-dog-17000336237536 Dog Library Canis lup...    42   2.5    2
(BJ445913) Dictyostelium discoideum cDNA clone:ddv61d05, 3' ...    32   2.5    3
(BJ437116) Dictyostelium discoideum cDNA clone:ddv33b10, 3' ...    32   2.6    3
(BJ341767) Dictyostelium discoideum cDNA clone:dda8g05, 3' e...    32   2.7    3
(CE019036) tigr-gss-dog-17000321835304 Dog Library Canis lup...    42   2.7    2
(EB377686) nbc35g01.y1 Rabbit trigeminal nerve. Unnormalized...    40   2.9    2
(BJ349769) Dictyostelium discoideum cDNA clone:dda37g18, 3' ...    32   3.0    3
(CU715748) Phaeodactylum tricornutum mRNA 5-prime sequence f...    34   3.9    2
(BJ357635) Dictyostelium discoideum cDNA clone:dda64o05, 3' ...    30   4.8    3
(AL163246) Homo sapiens chromosome 21 segment HS21C046.            40   5.3    3
(BC154108) Xenopus tropicalis cDNA clone IMAGE:7659983, part...    44   6.1    1
(AL772272) Mouse DNA sequence from clone RP23-369I8 on chrom...    44   6.1    1
(AL133316) Human chromosome 14 DNA sequence Partial sequence...    44   6.1    1
(AL132716) Human chromosome 14 DNA sequence BAC R-1124A8 of ...    44   6.1    1
(AC099369) Rattus norvegicus clone CH230-99L16, WORKING DRAF...    44   6.1    1
(AP007968) Lotus japonicus genomic DNA, chromosome 3, clone:...    44   6.1    1
(AC172154) Bos taurus clone CH240-249E20, WORKING DRAFT SEQU...    44   6.1    1
(EK260064) 1095462116928 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.1    1
(DH611252) Rattus norvegicus DNA, BAC clone: RNB1-140L17, 5'...    44   6.1    1
(DH610577) Rattus norvegicus DNA, BAC clone: RNB1-139M24, 5'...    44   6.1    1
(CE599566) tigr-gss-dog-17000366627801 Dog Library Canis lup...    44   6.1    1
(CX840165) JGI_CAAK9298.fwd NIH_XGC_tropBrn3 Xenopus (Silura...    44   6.1    1
(CX840080) JGI_CAAK9252.fwd NIH_XGC_tropBrn3 Xenopus (Silura...    44   6.1    1
(FC644676) CAXU7308.fwd CAXU Lottia gigantea from female gon...    44   6.1    1
(EV250198) EST_cclu_evb_461716 ccluevb mixed_tissue Coregonu...    44   6.1    1
(EV250197) EST_cclu_evb_461332 ccluevb mixed_tissue Coregonu...    44   6.1    1
(U97002) Caenorhabditis elegans cosmid K09H11, complete sequ...    38   6.4    3
(DD010736) Diagnosis of known genetic Parameters within the ...    32   8.6    2

>(BJ423498) Dictyostelium discoideum cDNA clone:ddv49l10, 5' end,
           single read.
          Length = 630

 Score = 1249 bits (630), Expect = 0.0
 Identities = 630/630 (100%)
 Strand = Plus / Plus


Query: 1   gtgaaacaatttttaattgaaactagacaatttttaactaaaatgattaaaatcgttaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtgaaacaatttttaattgaaactagacaatttttaactaaaatgattaaaatcgttaat 60


Query: 61  atcaaagaggaggtattggtcaatctttcagtttgtgccgatatgtcatatgcatgggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atcaaagaggaggtattggtcaatctttcagtttgtgccgatatgtcatatgcatgggaa 120


Query: 121 atcgttaataactatgtcgatcaaatgcaaaagggtattaaatccgatccaaaatgtgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atcgttaataactatgtcgatcaaatgcaaaagggtattaaatccgatccaaaatgtgta 180


Query: 181 ctaaaacttcgtgccacctttttgaaattagtatcaattctcgatttaccattggttaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctaaaacttcgtgccacctttttgaaattagtatcaattctcgatttaccattggttaga 240


Query: 241 atcgctcaatgttcatcacccgatcttatatcggtatcagagtattactctggtgaattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atcgctcaatgttcatcacccgatcttatatcggtatcagagtattactctggtgaattg 300


Query: 301 gttggttatgttagaaaggtattggaaatcgtaccaaaacaaatgtttttaatcttaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gttggttatgttagaaaggtattggaaatcgtaccaaaacaaatgtttttaatcttaaaa 360


Query: 361 caaatcattaatatgcaaactaataatattcaagagatgccaacaaaagttgagaaagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caaatcattaatatgcaaactaataatattcaagagatgccaacaaaagttgagaaagag 420


Query: 421 agattaagagatttcgctcaattggatcaaagatacgatttggcaagagcaacccattca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agattaagagatttcgctcaattggatcaaagatacgatttggcaagagcaacccattca 480


Query: 481 gtatcggttttcactgagggtattctagcaatggagacaacattggttggtatcattgaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtatcggttttcactgagggtattctagcaatggagacaacattggttggtatcattgaa 540


Query: 541 gtcgatccaaaacaattactcgaggatggtattcgtaaggagttggtattacaaattgca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gtcgatccaaaacaattactcgaggatggtattcgtaaggagttggtattacaaattgca 600


Query: 601 ttggcaatggataaaacattgattttcagt 630
           ||||||||||||||||||||||||||||||
Sbjct: 601 ttggcaatggataaaacattgattttcagt 630

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 689,629,265
Number of extensions: 38892128
Number of successful extensions: 3039748
Number of sequences better than 10.0: 80
Length of query: 639
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 616
Effective length of database: 93,106,754,628
Effective search space: 57353760850848
Effective search space used: 57353760850848
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 8
Homology vs Protein 
Query= Contig-U13698-1 (Contig-U13698-1Q) /CSM_Contig/Contig-U13698-1Q.Seq.d
         (639 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034070_1(BC034070|pid:none) Mus musculus RIKEN cDNA E430025E21...   263   3e-69
(Q6DIP9) RecName: Full=Strumpellin;  &BC075486_1(BC075486|pid:no...   262   5e-69
AK223628_1(AK223628|pid:none) Homo sapiens mRNA for Protein KIAA...   262   5e-69
(Q12768) RecName: Full=Strumpellin;  &AB463083_1(AB463083|pid:no...   262   5e-69
CP000586_92(CP000586|pid:none) Ostreococcus lucimarinus CCE9901 ...   224   2e-57
BT029280_1(BT029280|pid:none) Drosophila melanogaster IP14007 fu...   223   5e-57
BC031364_1(BC031364|pid:none) Mus musculus RIKEN cDNA E430025E21...   195   8e-49
CR954206_111(CR954206|pid:none) Ostreococcus tauri strain OTTH05...   150   4e-35
AM502245_118(AM502245|pid:none) Leishmania infantum chromosome 27.    135   1e-30
AK065158_1(AK065158|pid:none) Oryza sativa Japonica Group cDNA c...   108   1e-22
CR855111_5(CR855111|pid:none) Oryza sativa genomic DNA, chromoso...   108   1e-22
AK129086_1(AK129086|pid:none) Mus musculus premature mRNA for mK...    74   4e-12
AB174184_1(AB174184|pid:none) Macaca fascicularis brain cDNA clo...    56   1e-06
CP000660_945(CP000660|pid:none) Pyrobaculum arsenaticum DSM 1351...    33   5.4
BT045895_1(BT045895|pid:none) Salmo salar clone ssal-rgf-536-002...    33   5.4
AE015929_509(AE015929|pid:none) Staphylococcus epidermidis ATCC ...    33   9.1
DQ229200_1(DQ229200|pid:none) Phytophthora ramorum elicitin-like...    33   9.2
AP009049_3090(AP009049|pid:none) Clostridium kluyveri NBRC 12016...    33   9.2

>BC034070_1(BC034070|pid:none) Mus musculus RIKEN cDNA E430025E21
           gene, mRNA (cDNA clone MGC:31278 IMAGE:4217923),
           complete cds.  &BC040815_1(BC040815|pid:none)
          Length = 709

 Score =  263 bits (672), Expect = 3e-69
 Identities = 125/210 (59%), Positives = 175/210 (83%)
 Frame = +1

Query: 1   VKQFLIETRQFLTKMIKIVNIKEEVLVNLSVCADMSYAWEIVNNYVDQMQKGIKSDPKCV 180
           V QFL +TR+FL +MI+ +NIKEEVL+ + +  D+S+AW++++++   MQ+ I+ +P  V
Sbjct: 70  VCQFLADTRKFLHQMIRTINIKEEVLITVQIIGDLSFAWQLIDSFTSIMQESIRVNPSMV 129

Query: 181 LKLRATFLKLVSILDLPLVRIAQCSSPDLISVSEYYSGELVGYVRKVLEIVPKQMFLILK 360
            KLRATFLKL S LDLPL+RI Q +SPDL+SVS+YYSGELV YVRKVL+I+P+ MF  L
Sbjct: 130 TKLRATFLKLASALDLPLLRINQANSPDLLSVSQYYSGELVSYVRKVLQIIPESMFTSLL 189

Query: 361 QIINMQTNNIQEMPTKVEKERLRDFAQLDQRYDLARATHSVSVFTEGILAMETTLVGIIE 540
           +II +QT++I E+PT+++K++LRD+AQL  RY++A+ TH++S+FTEGIL M+TTLVGII+
Sbjct: 190 KIIKLQTHDIMEVPTRLDKDKLRDYAQLGPRYEVAKLTHAISIFTEGILMMKTTLVGIIK 249

Query: 541 VDPKQLLEDGIRKELVLQIALAMDKTLIFS 630
           VDPKQLLEDGIRKELV ++A A+ + LIF+
Sbjct: 250 VDPKQLLEDGIRKELVKRVAFALHRGLIFN 279

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,086,129,128
Number of extensions: 22204361
Number of successful extensions: 58872
Number of sequences better than 10.0: 18
Number of HSP's gapped: 58869
Number of HSP's successfully gapped: 18
Length of query: 213
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 90
Effective length of database: 653,084,107
Effective search space: 58777569630
Effective search space used: 58777569630
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.68  gvh: 0.61  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U13698-1 is cyt
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0