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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13680-1
Contig ID Contig-U13680-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13680-1 (Contig-U13680-1Q) /CSM_Contig/Contig-U13680-1Q.Seq.d
AAAAAGATTCTCAAGGAATTCACCGTGTTTATACTTCTTATGGTAGAACT
GATGGACCAAAAACTTTAGAAGTTAGATATGTTGATAATTTAGAAGATGG
TATTGATCTTTATTCAAGTATTTATAATGAAAAAACAAGTGATAAAAAAG
GTTATAAACCAGTTAAATTGGATTCATCATCAGTTAGTAGTTCAACTTCA
ACAGAATCATTAATTACAGCTGATAGTCAATTAGAACCATTAATAAAGAC
ATTGGTTGAAAATCTTTATGTTGAAGCAACCACTCAATTGACAAATAGTT
TTTCAGTTACAATCACTGAACGTGGTATTGAAACACCATTGGGTGTCTTA
TCAATGGAACAAGTTGAAAATGGTGAACTTGTTTTGAAAAAAATCAATAC
CTATTTGAATGGTACAACCAATCCATCATCAGTAGAGTTGGAGAAATTAA
GTTCAGAATTTTTCACAATTATTCCACATAAACTTGGTAGAGGTTCAGAT
GTTGTCTCAAAGAATACCATTAGAAATTTGGATCAATTGAATACCAAATT
CGAATTACTTCAATTAATGAAAGATTTATTGGTGGTTAAAGTTTCAGGTA
CTGGTAAACATGCACTCGATATGAAATATCGTGCATTAAAAACCAATTTA
TCACCCCTAGGTAAATATTCTTATGATTATTCGGTTGTAAAGAATCTACT
AAAAGGTGTANAGGGAATCAATGATTTAAATATCTACCAAATTCAAAAGG
AAGGTGATGTCGAGTCACATTCATTACAATCACCATCGAAATTATTATTT
CATGGTTCAAGAGCATCGAATT
Gap no gap
Contig length 822
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 2371965
End point 2372786
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U13680
List of clone(s) 

est1=VHE539F,1,640
est2=VHI446F,264,822
Translated Amino Acid sequence 
KDSQGIHRVYTSYGRTDGPKTLEVRYVDNLEDGIDLYSSIYNEKTSDKKGYKPVKLDSSS
VSSSTSTESLITADSQLEPLIKTLVENLYVEATTQLTNSFSVTITERGIETPLGVLSMEQ
VENGELVLKKINTYLNGTTNPSSVELEKLSSEFFTIIPHKLGRGSDVVSKNTIRNLDQLN
TKFELLQLMKDLLVVKVSGTGKHALDMKYRALKTNLSPLGKYSYDYSVVKNLLKGVXGIN
DLNIYQIQKEGDVESHSLQSPSKLLFHGSRASN
Translated Amino Acid sequence (All Frames) 
Frame A:
kkilkeftvfillmvelmdqkl*kldmlii*kmvlifiqvfimkkqvikkvinqlnwihh
qlvvqlqqnh*lqlivn*nh**rhwlkifmlkqpln*qivfqlqslnvvlkhhwvsyqwn
klkmvnlf*kksipi*mvqpihhq*swrn*vqnfsqlfhinlvevqmlsqripleiwin*
ipnsnyfn**kiywwlkfqvlvnmhsi*nivh*kpiyhp*vnilmiirl*riy*kvxres
mi*istkfkrkvmsshihynhhrnyyfmvqehri


Frame B:
krfsrnspclyflw*n*wtknfrs*ic**frrwy*slfkyl**knk**krl*ts*igfii
s**fnfnriinys**sirtinkdig*kslc*snhsidk*ffsynh*twy*ntigclingt
s*kw*tcfeknqylfewynqsiisrvgeikfrifhnyst*tw*rfrcclkeyh*kfgsie
yqiritsinerfigg*sfryw*tctryeisciknqfitpr*ifl*lfgckestkrcxgnq
*fkylpnskgr*crvtfititieiiiswfksie


Frame C:
KDSQGIHRVYTSYGRTDGPKTLEVRYVDNLEDGIDLYSSIYNEKTSDKKGYKPVKLDSSS
VSSSTSTESLITADSQLEPLIKTLVENLYVEATTQLTNSFSVTITERGIETPLGVLSMEQ
VENGELVLKKINTYLNGTTNPSSVELEKLSSEFFTIIPHKLGRGSDVVSKNTIRNLDQLN
TKFELLQLMKDLLVVKVSGTGKHALDMKYRALKTNLSPLGKYSYDYSVVKNLLKGVXGIN
DLNIYQIQKEGDVESHSLQSPSKLLFHGSRASN
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13680-1 (Contig-U13680-1Q)
/CSM_Contig/Contig-U13680-1Q.Seq.d
         (822 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13680-1 (Contig-U13680-1Q) /CSM_Contig/Conti...  1582  0.0
Contig-U11925-1 (Contig-U11925-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U13021-1 (Contig-U13021-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U06266-1 (Contig-U06266-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U11692-1 (Contig-U11692-1Q) /CSM_Contig/Conti...    36  0.058
Contig-U11253-1 (Contig-U11253-1Q) /CSM_Contig/Conti...    36  0.058
Contig-U10503-1 (Contig-U10503-1Q) /CSM_Contig/Conti...    36  0.058
Contig-U10432-1 (Contig-U10432-1Q) /CSM_Contig/Conti...    36  0.058
Contig-U04730-1 (Contig-U04730-1Q) /CSM_Contig/Conti...    36  0.058
Contig-U14570-1 (Contig-U14570-1Q) /CSM_Contig/Conti...    34  0.23

>Contig-U13680-1 (Contig-U13680-1Q) /CSM_Contig/Contig-U13680-1Q.Seq.d
          Length = 822

 Score = 1582 bits (798), Expect = 0.0
 Identities = 815/822 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaagattctcaaggaattcaccgtgtttatacttcttatggtagaactgatggaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaaaagattctcaaggaattcaccgtgtttatacttcttatggtagaactgatggaccaa 60

                                                                       
Query: 61  aaactttagaagttagatatgttgataatttagaagatggtattgatctttattcaagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaactttagaagttagatatgttgataatttagaagatggtattgatctttattcaagta 120

                                                                       
Query: 121 tttataatgaaaaaacaagtgataaaaaaggttataaaccagttaaattggattcatcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttataatgaaaaaacaagtgataaaaaaggttataaaccagttaaattggattcatcat 180

                                                                       
Query: 181 cagttagtagttcaacttcaacagaatcattaattacagctgatagtcaattagaaccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cagttagtagttcaacttcaacagaatcattaattacagctgatagtcaattagaaccat 240

                                                                       
Query: 241 taataaagacattggttgaaaatctttatgttgaagcaaccactcaattgacaaatagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taataaagacattggttgaaaatctttatgttgaagcaaccactcaattgacaaatagtt 300

                                                                       
Query: 301 tttcagttacaatcactgaacgtggtattgaaacaccattgggtgtcttatcaatggaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttcagttacaatcactgaacgtggtattgaaacaccattgggtgtcttatcaatggaac 360

                                                                       
Query: 361 aagttgaaaatggtgaacttgttttgnnnnnnntcaatacctatttgaatggtacaacca 420
           ||||||||||||||||||||||||||       |||||||||||||||||||||||||||
Sbjct: 361 aagttgaaaatggtgaacttgttttgaaaaaaatcaatacctatttgaatggtacaacca 420

                                                                       
Query: 421 atccatcatcagtagagttggagaaattaagttcagaatttttcacaattattccacata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atccatcatcagtagagttggagaaattaagttcagaatttttcacaattattccacata 480

                                                                       
Query: 481 aacttggtagaggttcagatgttgtctcaaagaataccattagaaatttggatcaattga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aacttggtagaggttcagatgttgtctcaaagaataccattagaaatttggatcaattga 540

                                                                       
Query: 541 ataccaaattcgaattacttcaattaatgaaagatttattggtggttaaagtttcaggta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ataccaaattcgaattacttcaattaatgaaagatttattggtggttaaagtttcaggta 600

                                                                       
Query: 601 ctggtaaacatgcactcgatatgaaatatcgtgcattaaaaaccaatttatcacccctag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctggtaaacatgcactcgatatgaaatatcgtgcattaaaaaccaatttatcacccctag 660

                                                                       
Query: 661 gtaaatattcttatgattattcggttgtaaagaatctactaaaaggtgtanagggaatca 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gtaaatattcttatgattattcggttgtaaagaatctactaaaaggtgtanagggaatca 720

                                                                       
Query: 721 atgatttaaatatctaccaaattcaaaaggaaggtgatgtcgagtcacattcattacaat 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 atgatttaaatatctaccaaattcaaaaggaaggtgatgtcgagtcacattcattacaat 780

                                                     
Query: 781 caccatcgaaattattatttcatggttcaagagcatcgaatt 822
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 caccatcgaaattattatttcatggttcaagagcatcgaatt 822


>Contig-U11925-1 (Contig-U11925-1Q) /CSM_Contig/Contig-U11925-1Q.Seq.d
          Length = 804

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 71  agttagatatgttgataatttaga 94
           ||||||| ||||||||||||||||
Sbjct: 595 agttagaaatgttgataatttaga 572


>Contig-U13021-1 (Contig-U13021-1Q) /CSM_Contig/Contig-U13021-1Q.Seq.d
          Length = 4777

 Score = 38.2 bits (19), Expect = 0.015
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 163  ttaaattggattcatcatc 181
            |||||||||||||||||||
Sbjct: 3627 ttaaattggattcatcatc 3645


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,356
Number of Sequences: 6905
Number of extensions: 11356
Number of successful extensions: 1157
Number of sequences better than 10.0: 132
length of query: 822
length of database: 5,674,871
effective HSP length: 16
effective length of query: 806
effective length of database: 5,564,391
effective search space: 4484899146
effective search space used: 4484899146
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.13
Homology vs DNA 
Query= Contig-U13680-1 (Contig-U13680-1Q) /CSM_Contig/Contig-U13680-1Q.Seq.d
         (822 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ422902) Dictyostelium discoideum cDNA clone:ddv47l12, 5' ...   844   0.0    2
(BJ420780) Dictyostelium discoideum cDNA clone:ddv40m09, 5' ...   765   0.0    2
(FE240850) CAPG6051.rev CAPG Naegleria gruberi amoeba stage ...    36   0.10   2
(FE242013) CAPG6963.rev CAPG Naegleria gruberi amoeba stage ...    36   0.10   2
(FE234396) CAPG2802.rev CAPG Naegleria gruberi amoeba stage ...    36   0.10   2
(FE240129) CAPG5702.rev CAPG Naegleria gruberi amoeba stage ...    36   0.10   2
(AC137540) Felis catus clone RP86-386P20, WORKING DRAFT SEQU...    40   0.30   4
(AC007777) Homo sapiens chromosome 18 clone RP11-493O9 map 1...    40   0.41   4
(ED075230) AUAC-aat92d06.b1 Ascaris suum whole genome shotgu...    48   0.53   1
(AC189565) Brassica rapa subsp. pekinensis clone KBrH009C15,...    36   1.1    2
(AC189350) Brassica rapa subsp. pekinensis clone KBrB043B23,...    36   1.1    2
(CP000361) Arcobacter butzleri RM4018, complete genome.            40   2.1    19
(CR854945) Zebrafish DNA sequence from clone DKEY-155H10 in ...    46   2.1    1
(CR792443) Zebrafish DNA sequence from clone DKEY-52K1 in li...    46   2.1    1
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    46   2.1    1
(CU329671) Schizosaccharomyces pombe chromosome II.                46   2.1    1
(CR555291) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   2.1    1
(AP009356) Onion yellows phytoplasma OY-W genomic DNA, parti...    36   4.2    5
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         36   5.2    15
(CW833759) OP__Ba0093A07.f OP__Ba Oryza punctata genomic clo...    34   5.3    2
(EL454898) CHTM7547.b1_E16.ab1 CHT(LMS) Jerusalem artichoke ...    40   6.2    2
(EK391678) 1095469504597 Global-Ocean-Sampling_GS-31-01-01-1...    32   7.8    3
(AL772389) Mouse DNA sequence from clone RP23-106D7 on chrom...    44   8.2    1
(AC132238) Mus musculus BAC clone RP24-532D9 from chromosome...    44   8.2    1
(AC114551) Mus musculus chromosome 3, clone RP23-301O12, com...    44   8.2    1
(AP008209) Oryza sativa (japonica cultivar-group) genomic DN...    44   8.2    1
(AC146702) Genomic sequence for Oryza sativa, Nipponbare str...    44   8.2    1
(AC146581) Oryza sativa (japonica cultivar-group) Nipponbare...    44   8.2    1
(EA679384) Sequence 58263 from patent US 7365185.                  44   8.2    1
(Z37983) Caenorhabditis elegans Cosmid B0393.                      44   8.2    1
(AC132746) Rattus norvegicus clone CH230-133H2, *** SEQUENCI...    44   8.2    1
(AC180505) Strongylocentrotus purpuratus clone R3-3099M09, W...    44   8.2    1
(AC178516) Strongylocentrotus purpuratus clone R3-3031L7, WO...    44   8.2    1
(AC178515) Strongylocentrotus purpuratus clone R3-3031K8, WO...    44   8.2    1
(CZ850421) OC__Ba0238L19.f OC__Ba Oryza coarctata genomic cl...    44   8.2    1
(DW945678) MSAM224792_3231_0161 LCM-dissected maize shoot ap...    44   8.2    1
(CU442512) Clytia hemisphaerica 5-PRIME EST from clone SA0AA...    44   8.2    1
(CU433909) Clytia hemisphaerica 5-PRIME EST from clone SA0AA...    44   8.2    1
(CU428256) Clytia hemisphaerica 5-PRIME EST from clone SA0AA...    44   8.2    1
(AC005315) Arabidopsis thaliana chromosome 2 clone T9I4 map ...    38   8.8    2

>(BJ422902) Dictyostelium discoideum cDNA clone:ddv47l12, 5' end,
           single read.
          Length = 559

 Score =  844 bits (426), Expect(2) = 0.0
 Identities = 429/429 (100%)
 Strand = Plus / Plus


Query: 394 tcaatacctatttgaatggtacaaccaatccatcatcagtagagttggagaaattaagtt 453
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tcaatacctatttgaatggtacaaccaatccatcatcagtagagttggagaaattaagtt 190


Query: 454 cagaatttttcacaattattccacataaacttggtagaggttcagatgttgtctcaaaga 513
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cagaatttttcacaattattccacataaacttggtagaggttcagatgttgtctcaaaga 250


Query: 514 ataccattagaaatttggatcaattgaataccaaattcgaattacttcaattaatgaaag 573
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ataccattagaaatttggatcaattgaataccaaattcgaattacttcaattaatgaaag 310


Query: 574 atttattggtggttaaagtttcaggtactggtaaacatgcactcgatatgaaatatcgtg 633
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atttattggtggttaaagtttcaggtactggtaaacatgcactcgatatgaaatatcgtg 370


Query: 634 cattaaaaaccaatttatcacccctaggtaaatattcttatgattattcggttgtaaaga 693
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cattaaaaaccaatttatcacccctaggtaaatattcttatgattattcggttgtaaaga 430


Query: 694 atctactaaaaggtgtanagggaatcaatgatttaaatatctaccaaattcaaaaggaag 753
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atctactaaaaggtgtanagggaatcaatgatttaaatatctaccaaattcaaaaggaag 490


Query: 754 gtgatgtcgagtcacattcattacaatcaccatcgaaattattatttcatggttcaagag 813
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gtgatgtcgagtcacattcattacaatcaccatcgaaattattatttcatggttcaagag 550


Query: 814 catcgaatt 822
           |||||||||
Sbjct: 551 catcgaatt 559

 Score =  244 bits (123), Expect(2) = 0.0
 Identities = 123/123 (100%)
 Strand = Plus / Plus


Query: 264 ctttatgttgaagcaaccactcaattgacaaatagtttttcagttacaatcactgaacgt 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctttatgttgaagcaaccactcaattgacaaatagtttttcagttacaatcactgaacgt 60


Query: 324 ggtattgaaacaccattgggtgtcttatcaatggaacaagttgaaaatggtgaacttgtt 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ggtattgaaacaccattgggtgtcttatcaatggaacaagttgaaaatggtgaacttgtt 120


Query: 384 ttg 386
           |||
Sbjct: 121 ttg 123

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 941,729,102
Number of extensions: 52977953
Number of successful extensions: 4011465
Number of sequences better than 10.0: 40
Length of query: 822
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 798
Effective length of database: 97,308,875,965
Effective search space: 77652483020070
Effective search space used: 77652483020070
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 8
Homology vs Protein 
Query= Contig-U13680-1 (Contig-U13680-1Q) /CSM_Contig/Contig-U13680-1Q.Seq.d
         (822 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ534951_1(AJ534951|pid:none) Dictyostelium discoideum mRNA for ...   125   2e-27
AJ520099_1(AJ520099|pid:none) Dictyostelium discoideum mRNA for ...    81   5e-14
BT045643_1(BT045643|pid:none) Salmo salar clone ssal-rgf-527-212...    77   5e-13
BC045935_1(BC045935|pid:none) Danio rerio poly (ADP-ribose) poly...    74   4e-12
AK303340_1(AK303340|pid:none) Homo sapiens cDNA FLJ53442 complet...    72   2e-11
(P31669) RecName: Full=Poly [ADP-ribose] polymerase;          Sh...    72   2e-11
AF072521_1(AF072521|pid:none) Mus musculus poly-(ADPribosyl)-tra...    72   3e-11
(Q9UGN5) RecName: Full=Poly [ADP-ribose] polymerase 2;          ...    71   4e-11
AF085734_1(AF085734|pid:none) Homo sapiens NAD+ ADP-ribosyltrans...    71   4e-11
(P26446) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...    70   6e-11
AX058340_1(AX058340|pid:none) Sequence 24 from Patent WO0077179....    70   8e-11
AK300971_1(AK300971|pid:none) Homo sapiens cDNA FLJ58629 complet...    70   8e-11
AK312339_1(AK312339|pid:none) Homo sapiens cDNA, FLJ92658, highl...    70   1e-10
J03473_1(J03473|pid:none) Human poly(ADP-ribose) synthetase mRNA...    70   1e-10
AB384394_1(AB384394|pid:none) Synthetic construct DNA, clone: pF...    70   1e-10
M18112_1(M18112|pid:none) Human poly(ADP-ribose) polymerase mRNA...    70   1e-10
AK290079_1(AK290079|pid:none) Homo sapiens cDNA FLJ75509 complet...    70   1e-10
(Q9R152) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...    69   1e-10
DQ891636_1(DQ891636|pid:none) Synthetic construct clone IMAGE:10...    69   1e-10
AF069298_14(AF069298|pid:none) Arabidopsis thaliana BAC T14P8.  ...    69   1e-10
(Q11207) RecName: Full=Poly [ADP-ribose] polymerase 2;          ...    69   1e-10
(P27008) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...    69   1e-10
(P18493) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...    69   2e-10
AK159433_1(AK159433|pid:none) Mus musculus osteoclast-like cell ...    69   2e-10
X65497_1(X65497|pid:none) R.norvegicus mRNA for poly(ADP-ribose)...    69   2e-10
AK169326_1(AK169326|pid:none) Mus musculus 17 days pregnant adul...    69   2e-10
AK167699_1(AK167699|pid:none) Mus musculus 14 days pregnant adul...    69   2e-10
AK030889_1(AK030889|pid:none) Mus musculus adult male thymus cDN...    69   2e-10
AB171818_1(AB171818|pid:none) Macaca fascicularis brain cDNA clo...    68   3e-10
BC076765_1(BC076765|pid:none) Xenopus laevis ADP-ribosyltransfer...    68   3e-10
(Q0JMY1) RecName: Full=Poly [ADP-ribose] polymerase 2-B;        ...    67   7e-10
AP008207_1251(AP008207|pid:none) Oryza sativa (japonica cultivar...    67   7e-10
M17081_1(M17081|pid:none) Human placental poly(ADP-ribose) polym...    67   7e-10
AF126717_1(AF126717|pid:none) Mus musculus msPARP mRNA, complete...    67   7e-10
(Q9ZSV1) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...    66   1e-09
AM427768_1(AM427768|pid:none) Vitis vinifera contig VV78X161143....    66   1e-09
GM894209_1(GM894209|pid:none) Sequence 10 from Patent EP1997899.       66   1e-09
AK166104_1(AK166104|pid:none) Mus musculus lung RCB-0558 LLC cDN...    66   1e-09
AJ222589_1(AJ222589|pid:none) Zea mays mRNA for poly(ADP-ribose)...    66   1e-09
BT044952_1(BT044952|pid:none) Salmo salar clone ssal-rgf-508-136...    66   2e-09
(P11103) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...    65   2e-09
AX008896_1(AX008896|pid:none) Sequence 5 from Patent WO9964572. ...    65   2e-09
AL050034_1(AL050034|pid:none) Homo sapiens mRNA; cDNA DKFZp566G0...    65   2e-09
AX008894_1(AX008894|pid:none) Sequence 3 from Patent WO9964572. ...    65   2e-09
AF083068_1(AF083068|pid:none) Homo sapiens NAD+ ADP-ribosyltrans...    65   2e-09
BC014870_1(BC014870|pid:none) Mus musculus poly (ADP-ribose) pol...    65   3e-09
CU633446_48(CU633446|pid:none) Podospora anserina genomic DNA ch...    64   8e-09
(Q7EYV7) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...    63   1e-08
AF368233_1(AF368233|pid:none) Mus musculus NAD+ ADP-ribosyltrans...    62   2e-08
AK145259_1(AK145259|pid:none) Mus musculus mammary gland RCB-052...    62   2e-08
AK147868_1(AK147868|pid:none) Mus musculus melanocyte cDNA, RIKE...    62   2e-08
(Q11208) RecName: Full=Poly [ADP-ribose] polymerase;          Sh...    62   2e-08
BC087453_1(BC087453|pid:none) Xenopus laevis hypothetical LOC496...    62   3e-08
PDBF(1A26) MOL_ID: 1; MOLECULE: POLY (ADP-RIBOSE) POLYMERASE; CH...    62   3e-08
AC104488_2(AC104488|pid:none) Trypanosoma brucei chromosome 5 cl...    62   3e-08
BT034831_1(BT034831|pid:none) Zea mays full-length cDNA clone ZM...    61   4e-08
DQ679800_1(DQ679800|pid:none) Trypanosoma brucei brucei poly(ADP...    61   4e-08
(Q5Z8Q9) RecName: Full=Poly [ADP-ribose] polymerase 2-A;        ...    61   4e-08
AP008207_1252(AP008207|pid:none) Oryza sativa (japonica cultivar...    61   4e-08
AP003258_10(AP003258|pid:none) Oryza sativa Japonica Group genom...    61   4e-08
(O50017) RecName: Full=Poly [ADP-ribose] polymerase 2;          ...    61   4e-08
(Q9ZP54) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...    60   1e-07
AM270397_24(AM270397|pid:none) Aspergillus niger contig An18c004...    59   1e-07
DQ061295_1(DQ061295|pid:none) Trypanosoma cruzi poly(ADP-ribose)...    59   2e-07
(P35875) RecName: Full=Poly [ADP-ribose] polymerase;          Sh...    58   4e-07
AY118947_1(AY118947|pid:none) Drosophila melanogaster LD31274 fu...    58   4e-07
AK172907_1(AK172907|pid:none) Mus musculus mRNA for mKIAA0177 pr...    57   6e-07
AM920427_272(AM920427|pid:none) Penicillium chrysogenum Wisconsi...    57   6e-07
BC161791_1(BC161791|pid:none) Xenopus tropicalis hypothetical pr...    57   6e-07
CS434494_1(CS434494|pid:none) Sequence 12 from Patent WO20060456...    57   9e-07
AY815284_1(AY815284|pid:none) Schistosoma japonicum SJCHGC00945 ...    56   1e-06
AJ534950_1(AJ534950|pid:none) Dictyostelium discoideum mRNA for ...    53   1e-05
AK304399_1(AK304399|pid:none) Homo sapiens cDNA FLJ61556 complet...    51   4e-05
(Q9UKK3) RecName: Full=Poly [ADP-ribose] polymerase 4;          ...    51   4e-05
AF057160_1(AF057160|pid:none) Homo sapiens putative poly(ADP-rib...    51   4e-05
AB384443_1(AB384443|pid:none) Synthetic construct DNA, clone: pF...    51   4e-05
FN357398_4(FN357398|pid:none) Schistosoma mansoni genome sequenc...    51   5e-05
AY349148_1(AY349148|pid:none) Emericella nidulans poly(ADP)-ribo...    50   7e-05
AY347573_1(AY347573|pid:none) Emericella nidulans poly(ADP)-ribo...    50   9e-05
T18600(T18600)hypothetical protein AC8.1 - Caenorhabditis elegans      48   4e-04
AF499444_1(AF499444|pid:none) Caenorhabditis elegans poly ADP-ri...    47   0.001
(Q9N4H4) RecName: Full=Poly(ADP-ribose) polymerase pme-1;       ...    47   0.001
(Q6GDE9) RecName: Full=Serine-rich adhesin for platelets; AltNam...    39   0.27
AL935252_52(AL935252|pid:none) Lactobacillus plantarum strain WC...    37   1.0
AE001437_2998(AE001437|pid:none) Clostridium acetobutylicum ATCC...    36   1.7
BT070007_1(BT070007|pid:none) Zea mays full-length cDNA clone ZM...    35   2.3
D13810_1(D13810|pid:none) Xenopus laevis mRNA for poly(ADP-ribos...    35   2.3
CP000934_3241(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    35   2.9
FN357321_18(FN357321|pid:none) Schistosoma mansoni genome sequen...    35   3.8
S73708(S73708) MG321 homolog H08_orf591 - Mycoplasma pneumoniae ...    34   5.0
CP001186_5453(CP001186|pid:none) Bacillus cereus G9842, complete...    34   5.0
BX294151_107(BX294151|pid:none) Rhodopirellula baltica SH 1 comp...    34   5.0
CP000283_4165(CP000283|pid:none) Rhodopseudomonas palustris BisB...    34   6.6
(P75327) RecName: Full=Uncharacterized lipoprotein MG321 homolog...    34   6.6
CP000716_275(CP000716|pid:none) Thermosipho melanesiensis BI429,...    33   8.6
(P47563) RecName: Full=Uncharacterized lipoprotein MG321; Flags:...    33   8.6
AE005672_339(AE005672|pid:none) Streptococcus pneumoniae TIGR4, ...    33   8.6
AL445563_203(AL445563|pid:none) Mycoplasma pulmonis (strain UAB ...    33   8.6
AE017282_1281(AE017282|pid:none) Methylococcus capsulatus str. B...    33   8.6

>AJ534951_1(AJ534951|pid:none) Dictyostelium discoideum mRNA for
            NAD(+) ADP-ribosyltransferase-4 (adprt-4 gene).
          Length = 644

 Score =  125 bits (313), Expect = 2e-27
 Identities = 95/315 (30%), Positives = 150/315 (47%), Gaps = 48/315 (15%)
 Frame = +3

Query: 21   HRVYTSYGRTDG--PKTLEVRYVDN-LEDGIDLYSSIYNEKTSDKKGYKPVKLDXXXXXX 191
            +R++T +GRTD       + RYV N L++ + LYSSIY++K     GY  VK++
Sbjct: 205  YRIFTQFGRTDEIQKSNSQHRYVSNDLKEAMALYSSIYSQKIESDNGYIEVKMNSITKIG 264

Query: 192  XXXXXXLITAD-------------------------------SQLEPLIKTLVENLYVEA 278
                   +                                  S +E  +  L++ +Y EA
Sbjct: 265  SKLKLAQLNQQKENDVNANTHIKVYNEETGEEETGQQSLFQRSYIETNVSKLMDIIYKEA 324

Query: 279  TTQLTNSFSVTITERGIETPLGVLSMEQVENGELVLKKINTYLNGTTNPSSVELEKLSSE 458
            +  L  +FSV +TE GIET LG LSM Q+E  + +L +IN  LN     +   LE LSS
Sbjct: 325  SKCLIKNFSVEVTENGIETQLGALSMAQIEEAKSILNEINNVLNKDGIDNQENLEMLSSR 384

Query: 459  FFTIIPHKLG-RGSDVVSKNTIRNLDQLNTKFELLQLMKDLL----VVKVSGTGKHALDM 623
            F+ ++P K+  + +   SK+ I + + LN   EL+ +MKDL       K +   K+ LDM
Sbjct: 385  FYQLVPSKISTKKNRDSSKSVINSFESLNQLSELMNMMKDLTNSFNSNKTTSESKNHLDM 444

Query: 624  KYRALKTNLSPLGKYSYDYSV-VKNLL------KGVXG--INDLNIYQIQKEGDVESHSL 776
            KY AL T++  L + S  Y + ++N L      K +    I  LN Y++ K+ + ++
Sbjct: 445  KYYALNTHIEHLHQASAGYQIFIRNFLSNPHHQKAIDNGEIKILNCYRLDKKLESDNFLD 504

Query: 777  QSPSKLLFHGSRASN 821
                + L+HGS+  N
Sbjct: 505  VGNVQYLYHGSKPQN 519

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,282,664,464
Number of extensions: 25863868
Number of successful extensions: 54134
Number of sequences better than 10.0: 99
Number of HSP's gapped: 54048
Number of HSP's successfully gapped: 100
Length of query: 274
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 147
Effective length of database: 640,137,871
Effective search space: 94100267037
Effective search space used: 94100267037
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.68  gvh: 0.22  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U13680-1 is nuc
VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0