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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13660-1
Contig ID Contig-U13660-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13660-1 (Contig-U13660-1Q) /CSM_Contig/Contig-U13660-1Q.Seq.d
ATTCTCCTTCAATATAATAAATATATAACTTTGTATATATAAATAAAATA
AAATAAAATGGGTAAAATCAAGAAATCAACTAAAAAGGTAGATATTCAAG
CCTTAAAGAAACAAAGAAGATTCCAAAAAAAAGTAGTTAAAGGAAGACAA
GTTTCTGAAAAGTCTATGGCCAATTATAGAGAAGTTGAAAGTGAAGAAGA
GGAAGAATTACAATTAGAAGAAAAACAACCAATCCGTAACACAAAAATCG
TATCAAATGAACAAGAGGATGACGATGATGATGATGAGGGTGAAGAAGAT
GATGATGAAGAAGAAGAAGAAGAAGAGGATGAAGAAGTTGAAGTTGAATT
AGATTCTAAAGATAAAGAATTGGCCAATAAAAAAGATAAAAAAGAAGTTG
GTAAAGACTCTGAAAAAACCAAATCCTTAAAAGAACAAATTACACAACAT
AAAAAAGATTTAGATGAATTAAAGAAAAAAGATCCAAAATTATTTGAGTT
TCTTGGTGAAAATGATAAAGAATTATTAAGTTTCAATACAGAAATGGATG
ATGATGATGATGAAGAAAGTGATGACGATGATGACGCTGAAGATGCTGAA
GGTGAAGGAGAGGGTGAAAAAGAAAAGAATCAAAAAGAAGTTTTAACATC
AGCACTTTTAGATTCATGGATTTCAGAAGCAAATAAAAATACAACAGTTC
AAAATGTTAAGAAATTAGTAGTTGCATTTAGATGTGCATCACATGCAGGT
AGTGATTTGAAAGAGGTTGACGAAGTACCATATAAAATTGTAAATACTGC
TGTATTCAATAGAACCCTTTTAATCTGTCTTGAAAATATGCCAAAATTCT
TTGATAAATTACTCGATTACGATAGTGTTAAAAACTCTGATCAAGAGATT
ACAGATGCAAATAATAAAACTGAATTACCAAGTTCATCTAAAAAATGGAA
TCTCGTTAAATCTTGTGTCAGTTCTTATATTAGATCAATCATTCAACTCT
TAACTCAAGTATCTGAATCAAATTTATTATTAATTATTCTTAAAGGTTTA
GAAAAAGTTATTTGTTATTCTTCATGTTTTACAAAATATTCAAAAATGTT
ATTGAAACATTTA
Gap no gap
Contig length 1113
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1924545
End point 1925658
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 3
Link to clone list U13660
List of clone(s) 

est1=VHM292F,1,463
est2=VHQ364F,11,652
est3=VHG887F,458,1113
Translated Amino Acid sequence 
illqynkyitlyi*ik*NKMGKIKKSTKKVDIQALKKQRRFQKKVVKGRQVSEKSMANYR
EVESEEEEELQLEEKQPIRNTKIVSNEQEDDDDDDEGEEDDDEEEEEEEDEEVEVELDSK
DKELANKKDKKEVGKDSEKTKSLKEQITQHKKDLDELKKKDPKLFEFLGENDKELLSFNT
EMDDDDDEESDDDDDAEDAEGEGEGEKEKNQKEVLTSALLDSWISEANKNTTVQNVKKLV
VAFRCASHAGSDLKEVDEVPYKIVNTAVFNRTLLICLENMPKFFDKLLDYDSVKNSDQEI
TDANNKTELPSSSKKWNLVKSCVSSYIRSIIQLLTQVSESNLLLIILKGLEKVICYSSCF
TKYSKMLLKHL
Translated Amino Acid sequence (All Frames) 
Frame A:
illqynkyitlyi*ik*NKMGKIKKSTKKVDIQALKKQRRFQKKVVKGRQVSEKSMANYR
EVESEEEEELQLEEKQPIRNTKIVSNEQEDDDDDDEGEEDDDEEEEEEEDEEVEVELDSK
DKELANKKDKKEVGKDSEKTKSLKEQITQHKKDLDELKKKDPKLFEFLGENDKELLSFNT
EMDDDDDEESDDDDDAEDAEGEGEGEKEKNQKEVLTSALLDSWISEANKNTTVQNVKKLV
VAFRCASHAGSDLKEVDEVPYKIVNTAVFNRTLLICLENMPKFFDKLLDYDSVKNSDQEI
TDANNKTELPSSSKKWNLVKSCVSSYIRSIIQLLTQVSESNLLLIILKGLEKVICYSSCF
TKYSKMLLKHL


Frame B:
fsfniini*lciyk*nkikwvksrnqlkr*ifkp*rnkedskkk*lkedkflkslwpiie
klkvkkrknyn*kknnqsvtqksyqmnkrmtmmmmrvkkmmmkkkkkkrmkklkln*ilk
iknwpikkikkklvktlkkpnp*knklhnikki*mn*rkkiqnylsflvkmikny*vsiq
kwmmmmmkkvmtmmtlkmlkvkervkkkrikkkf*hqhf*ihgfqkqikiqqfkmlrn**
lhldvhhmqvvi*krltkyhikl*illysiepf*svlkicqnslinysitivlktlikrl
qmqiiklnyqvhlkngislnlvsvlildqsfns*lkylnqiyy*lflkv*kklfvilhvl
qniqkcy*ni


Frame C:
spsi**iynfvyinkik*ng*nqein*kgrysslketkkipkkss*rktsf*kvygql*r
s*k*rrgritirrkttnp*hknrik*trg*r****g*rr***rrrrrrg*rs*s*irf*r
*rigq*kr*krsw*rl*knqilkrtnytt*krfr*ikekrskii*vsw*k**riikfqyr
ng*****rk**r**r*rc*r*rrg*krkeskrsfnistfrfmdfrsk*kynsskc*eiss
ci*mcitcr**ferg*rsti*nckycciq*npfnls*kyakil**itrlr*c*kl*srdy
rck**n*itkfi*kmesr*ilcqfly*inhstlnssi*ikfiinys*rfrksyllffmfy
kifknvietf
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13660-1 (Contig-U13660-1Q)
/CSM_Contig/Contig-U13660-1Q.Seq.d
         (1113 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13660-1 (Contig-U13660-1Q) /CSM_Contig/Conti...  1005  0.0
Contig-U07029-1 (Contig-U07029-1Q) /CSM_Contig/Conti...    46  8e-05
Contig-U01237-1 (Contig-U01237-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11714-1 (Contig-U11714-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U11270-1 (Contig-U11270-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U09046-1 (Contig-U09046-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U10958-1 (Contig-U10958-1Q) /CSM_Contig/Conti...    36  0.079
Contig-U10171-1 (Contig-U10171-1Q) /CSM_Contig/Conti...    36  0.079
Contig-U06658-1 (Contig-U06658-1Q) /CSM_Contig/Conti...    36  0.079
Contig-U01844-1 (Contig-U01844-1Q) /CSM_Contig/Conti...    36  0.079

>Contig-U13660-1 (Contig-U13660-1Q) /CSM_Contig/Contig-U13660-1Q.Seq.d
          Length = 1113

 Score = 1005 bits (507), Expect = 0.0
 Identities = 507/507 (100%)
 Strand = Plus / Plus

                                                                        
Query: 607  ggagagggtgaaaaagaaaagaatcaaaaagaagttttaacatcagcacttttagattca 666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607  ggagagggtgaaaaagaaaagaatcaaaaagaagttttaacatcagcacttttagattca 666

                                                                        
Query: 667  tggatttcagaagcaaataaaaatacaacagttcaaaatgttaagaaattagtagttgca 726
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667  tggatttcagaagcaaataaaaatacaacagttcaaaatgttaagaaattagtagttgca 726

                                                                        
Query: 727  tttagatgtgcatcacatgcaggtagtgatttgaaagaggttgacgaagtaccatataaa 786
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727  tttagatgtgcatcacatgcaggtagtgatttgaaagaggttgacgaagtaccatataaa 786

                                                                        
Query: 787  attgtaaatactgctgtattcaatagaacccttttaatctgtcttgaaaatatgccaaaa 846
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787  attgtaaatactgctgtattcaatagaacccttttaatctgtcttgaaaatatgccaaaa 846

                                                                        
Query: 847  ttctttgataaattactcgattacgatagtgttaaaaactctgatcaagagattacagat 906
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847  ttctttgataaattactcgattacgatagtgttaaaaactctgatcaagagattacagat 906

                                                                        
Query: 907  gcaaataataaaactgaattaccaagttcatctaaaaaatggaatctcgttaaatcttgt 966
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907  gcaaataataaaactgaattaccaagttcatctaaaaaatggaatctcgttaaatcttgt 966

                                                                        
Query: 967  gtcagttcttatattagatcaatcattcaactcttaactcaagtatctgaatcaaattta 1026
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967  gtcagttcttatattagatcaatcattcaactcttaactcaagtatctgaatcaaattta 1026

                                                                        
Query: 1027 ttattaattattcttaaaggtttagaaaaagttatttgttattcttcatgttttacaaaa 1086
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 ttattaattattcttaaaggtttagaaaaagttatttgttattcttcatgttttacaaaa 1086

                                       
Query: 1087 tattcaaaaatgttattgaaacattta 1113
            |||||||||||||||||||||||||||
Sbjct: 1087 tattcaaaaatgttattgaaacattta 1113


 Score =  303 bits (153), Expect = 2e-82
 Identities = 153/153 (100%)
 Strand = Plus / Plus

                                                                       
Query: 394 gaagttggtaaagactctgaaaaaaccaaatccttaaaagaacaaattacacaacataaa 453
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gaagttggtaaagactctgaaaaaaccaaatccttaaaagaacaaattacacaacataaa 453

                                                                       
Query: 454 aaagatttagatgaattaaagaaaaaagatccaaaattatttgagtttcttggtgaaaat 513
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aaagatttagatgaattaaagaaaaaagatccaaaattatttgagtttcttggtgaaaat 513

                                            
Query: 514 gataaagaattattaagtttcaatacagaaatg 546
           |||||||||||||||||||||||||||||||||
Sbjct: 514 gataaagaattattaagtttcaatacagaaatg 546


 Score =  289 bits (146), Expect = 3e-78
 Identities = 162/170 (95%)
 Strand = Plus / Plus

                                                                       
Query: 87  ggtagatattcaagccttaaagaaacaaagaagattccnnnnnnnngtagttaaaggaag 146
           ||||||||||||||||||||||||||||||||||||||        ||||||||||||||
Sbjct: 87  ggtagatattcaagccttaaagaaacaaagaagattccaaaaaaaagtagttaaaggaag 146

                                                                       
Query: 147 acaagtttctgaaaagtctatggccaattatagagaagttgaaagtgaagaagaggaaga 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 acaagtttctgaaaagtctatggccaattatagagaagttgaaagtgaagaagaggaaga 206

                                                             
Query: 207 attacaattagaagaaaaacaaccaatccgtaacacaaaaatcgtatcaa 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attacaattagaagaaaaacaaccaatccgtaacacaaaaatcgtatcaa 256


 Score = 60.0 bits (30), Expect = 5e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 349 ttagattctaaagataaagaattggccaat 378
           ||||||||||||||||||||||||||||||
Sbjct: 349 ttagattctaaagataaagaattggccaat 378


>Contig-U07029-1 (Contig-U07029-1Q) /CSM_Contig/Contig-U07029-1Q.Seq.d
          Length = 834

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 507 tgaaaatgataaagaattattaa 529
           |||||||||||||||||||||||
Sbjct: 227 tgaaaatgataaagaattattaa 249


>Contig-U01237-1 (Contig-U01237-1Q) /CSM_Contig/Contig-U01237-1Q.Seq.d
          Length = 1281

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 186 tgaaagtgaagaagaggaaga 206
           |||||||||||||||||||||
Sbjct: 470 tgaaagtgaagaagaggaaga 490


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,378
Number of Sequences: 6905
Number of extensions: 18378
Number of successful extensions: 2149
Number of sequences better than 10.0: 278
length of query: 1113
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1097
effective length of database: 5,564,391
effective search space: 6104136927
effective search space used: 6104136927
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.13
Homology vs DNA 
Query= Contig-U13660-1 (Contig-U13660-1Q) /CSM_Contig/Contig-U13660-1Q.Seq.d
         (1113 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ422124) Dictyostelium discoideum cDNA clone:ddv44n22, 5' ...   981   0.0    2
(BJ427822) Dictyostelium discoideum cDNA clone:ddv63p15, 5' ...   246   e-112  4
(BJ425473) Dictyostelium discoideum cDNA clone:ddv55g24, 5' ...   246   5e-77  2
(BS000096) Pan troglodytes chromosome 22 clone:PTB-103C09, m...    54   0.012  1
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   0.029  14
(CW122956) 104_502_11110955_116_34687_046 Sorghum methylatio...    44   0.16   2
(EB615393) AGENCOURT_56935258 D. grimshawi EST Drosophila gr...    40   0.18   2
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    46   0.24   4
(EK299163) 1095462358648 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.52   2
(BU458732) 603777770F1 CSEQRBN19 Gallus gallus cDNA clone Ch...    42   0.69   2
(AY572435) Plasmodium reichenowi erythrocyte invasion ligand...    48   0.72   1
(AC139652) Rattus norvegicus clone CH230-167K10, WORKING DRA...    48   0.72   1
(AC226566) Zea mays chromosome 2 clone ZMMBBb-210I7; ZMMBBb0...    48   0.72   1
(AC213838) Zea mays chromosome 2 clone CH201-316O17; ZMMBBc0...    48   0.72   1
(ER549015) 1093016206059 Global-Ocean-Sampling_GS-35-01-01-1...    48   0.72   1
(EJ471887) 1095403415066 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.72   1
(EJ327188) 1092963396482 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.72   1
(EJ188520) 1092344169381 Global-Ocean-Sampling_GS-27-01-01-1...    48   0.72   1
(AF117611) Dictyostelium discoideum DosA protein (dosA) gene...    38   0.79   3
(DR416305) gPGC_EST06147 Embryonic gonadal PGC cDNA Library ...    38   0.98   3
(AZ535770) ENTCI26TR Entamoeba histolytica Sheared DNA Entam...    34   1.6    3
(BH160515) ENTSA49TF Entamoeba histolytica Sheared DNA Entam...    34   1.6    3
(ER378158) 1094338202931 Global-Ocean-Sampling_GS-34-01-01-1...    38   1.6    3
(AZ550067) ENTEO53TF Entamoeba histolytica Sheared DNA Entam...    34   1.6    3
(AM477141) Vitis vinifera contig VV78X035827.11, whole genom...    36   1.6    2
(AC217039) Solanum tuberosum chromosome 6 clone RHPOTKEY177L...    44   2.2    5
(ED207532) AUAC-aaf35a01.g1 Ascaris suum whole genome shotgu...    42   2.6    2
(BX530065) Zebrafish DNA sequence from clone CH211-73J11 in ...    46   2.8    1
(BX321888) Zebrafish DNA sequence from clone DKEYP-47D4 in l...    46   2.8    1
(BX322619) Mouse DNA sequence from clone RP23-323O14 on chro...    46   2.8    1
(AP001691) Homo sapiens genomic DNA, chromosome 21q, section...    46   2.8    1
(AP000964) Homo sapiens genomic DNA, chromosome 21q21.1-q21....    46   2.8    1
(AC005157) Homo sapiens PAC clone RP5-1108A12 from 14q24.3, ...    46   2.8    1
(CU915668) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.8    1
(AC068698) Homo sapiens chromosome 14 clone RP11-555P23 map ...    46   2.8    1
(CU463063) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.8    1
(EK116315) 1092963248431 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.8    1
(EK106584) 1092963056259 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.8    1
(EK099325) 1092963000905 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.8    1
(EK091211) 1092962001865 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.8    1
(CZ902398) flea001f002p02f0 Tomato methylation filtered libr...    46   2.8    1
(AU270341) Dictyostelium discoideum vegetative cDNA clone:VS...    46   2.8    1
(AM054617) Isotricha prostoma EST, clone Ip02_B01.                 46   2.8    1
(BW309918) Ciona intestinalis cDNA, clone:ciht005l23, 5' end...    46   2.8    1
(BW046056) Ciona intestinalis cDNA, clone:cibd005h18, 5' end...    46   2.8    1
(BW033841) Ciona intestinalis cDNA, clone:cibd024c13, 5' end...    46   2.8    1
(FK188398) XABT203665.b1 Gateway compatible cien cDNA librar...    46   2.8    1
(FC299020) CAIC10079.fwd CAIC Nematostella vectensis Nemve w...    46   2.8    1
(FC299019) CAIC10079.rev CAIC Nematostella vectensis Nemve w...    46   2.8    1
(CP000934) Cellvibrio japonicus Ueda107, complete genome.          46   2.8    1
(AJ936837) Theileria annulata EST, clone ta0075D02_b.              40   3.8    2
(AM654823) Entamoeba moshkovskii FIC GSS, clone mosh017e10.p1k.    34   4.3    3
(AJ932238) Theileria annulata EST, clone ta0089G03_b.              40   4.8    2
(CT033793) Mouse DNA sequence from clone RP23-21O10 on chrom...    34   5.3    2
(CU407280) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   5.3    2
(AC156502) Mus musculus BAC clone RP23-355N1 from 9, complet...    34   5.3    2
(AC163289) Mus musculus BAC clone RP23-269K2 from chromosome...    34   5.3    2
(AC213401) Pongo abelii chromosome 15 clone CH276-308M22, WO...    32   5.3    2
(CU914192) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   5.3    2
(AC177972) Strongylocentrotus purpuratus clone R3-3049P7, WO...    32   5.4    2
(CK609034) IFNf_N06 Interferon Stimulated Chicken PBL Macrop...    38   5.7    2
(CK607053) Controlb_M21 Unstimulated Chicken PBL Macrophage ...    38   5.7    2
(AL584127) Gallus gallus mRNA; expressed sequence tag ROS004...    38   5.7    2
(CK613560) LPSl_K22 LPS stimulated Chicken PBL Macrophage Ga...    38   5.7    2
(CK612028) LPSb_O13 LPS stimulated Chicken PBL Macrophage Ga...    38   5.7    2
(AC210291) Zea mays chromosome 7 clone ZMMBBb-391F3; ZMMBBb0...    38   5.8    2
(AJ930755) Theileria annulata EST, clone ta0090E02_b.              40   5.9    2
(CN233814) RJA118E10.ab1 RJbrain Gallus gallus cDNA 5', mRNA...    38   6.1    2
(AM468967) Vitis vinifera contig VV78X061760.8, whole genome...    32   6.2    2
(AJ934508) Theileria annulata EST, clone ta0075E09_b.              40   6.2    2
(AI979994) pat.pk0008.h9 chicken activated T cell cDNA Gallu...    38   6.2    2
(EC820931) SME00002414 esmbsro2 Sawyeria marylandensis cDNA,...    38   6.4    2
(AJ920841) Theileria annulata EST, clone TAC3d08_q1k.              40   6.5    2
(CN225221) WLA069A04.ab1 WLbrain Gallus gallus cDNA 5', mRNA...    38   6.5    2
(CE852496) tigr-gss-dog-17000336960289 Dog Library Canis lup...    40   6.6    2
(EF568108) Glossina pallidipes salivary gland hypertrophy vi...    40   6.7    9
(AL584081) Gallus gallus mRNA; expressed sequence tag ROS003...    38   6.8    2
(AJ923367) Theileria annulata EST, clone TAC8f04_q1ka.             40   6.8    2
(AJ921962) Theileria annulata EST, clone TAC8f04_p1ka.             40   6.8    2
(DN829803) pat.pk0017.c2 Chicken lymphoid library (pat) Gall...    38   6.8    2
(AJ398118) Gallus gallus EST clone 4i19r1.                         38   6.9    2
(CD728322) 4034310 1GAL - Chicken Intestinal Lymphocyte Gall...    38   6.9    2
(CN233835) RJA118H04.ab1 RJbrain Gallus gallus cDNA 5', mRNA...    38   7.0    2
(BX268283) Gallus gallus multi-tissues normalized and once-s...    38   7.0    2
(DN854538) 4151044 BARC_3GAL chicken mixed tissue Gallus gal...    38   7.0    2
(BU251292) 603404517F1 CSEQCHN35 Gallus gallus cDNA clone Ch...    38   7.0    2
(AM651747) Entamoeba moshkovskii FIC GSS, clone mosh101f12.p1k.    32   7.1    2
(CK492112) rswab0_010856.y1 swa Bombyx mori cDNA, mRNA seque...    38   7.2    2
(ER630043) 1093018415841 Global-Ocean-Sampling_GS-36-01-01-2...    32   7.2    2
(AJ932447) Theileria annulata EST, clone ta0069D11_b.              40   7.2    2
(AI882077) ul56e04.x1 Sugano mouse kidney mkia Mus musculus ...    34   7.3    2
(BX275480) Gallus gallus multi-tissues normalized and once-s...    38   7.3    2
(BM487784) pgm2n.pk005.j2 Normalized Chicken Breast Muscle, ...    38   7.4    2
(AJ448271) Gallus gallus EST, clone library riken1, clone 19...    38   7.5    2
(BI066200) pgf1n.pk007.f4 normalized chicken fat cDNA librar...    38   7.5    2
(BU318894) 603850767F1 CSEQCHN62 Gallus gallus cDNA clone Ch...    38   7.5    2
(CB017344) pgn1c.pk015.m20 Chicken lymphoid cDNA library (pg...    38   7.6    2
(BX260341) Gallus gallus multi-tissues normalized library (g...    38   7.6    2
(AJ935441) Theileria annulata EST, clone ta0019B07_b.              40   7.6    2
(AM071124) Gallus gallus EST, clone C0000853G13_T7.                38   7.6    2

>(BJ422124) Dictyostelium discoideum cDNA clone:ddv44n22, 5' end,
            single read.
          Length = 656

 Score =  981 bits (495), Expect(2) = 0.0
 Identities = 495/495 (100%)
 Strand = Plus / Plus


Query: 619  aaagaaaagaatcaaaaagaagttttaacatcagcacttttagattcatggatttcagaa 678
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162  aaagaaaagaatcaaaaagaagttttaacatcagcacttttagattcatggatttcagaa 221


Query: 679  gcaaataaaaatacaacagttcaaaatgttaagaaattagtagttgcatttagatgtgca 738
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222  gcaaataaaaatacaacagttcaaaatgttaagaaattagtagttgcatttagatgtgca 281


Query: 739  tcacatgcaggtagtgatttgaaagaggttgacgaagtaccatataaaattgtaaatact 798
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282  tcacatgcaggtagtgatttgaaagaggttgacgaagtaccatataaaattgtaaatact 341


Query: 799  gctgtattcaatagaacccttttaatctgtcttgaaaatatgccaaaattctttgataaa 858
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342  gctgtattcaatagaacccttttaatctgtcttgaaaatatgccaaaattctttgataaa 401


Query: 859  ttactcgattacgatagtgttaaaaactctgatcaagagattacagatgcaaataataaa 918
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402  ttactcgattacgatagtgttaaaaactctgatcaagagattacagatgcaaataataaa 461


Query: 919  actgaattaccaagttcatctaaaaaatggaatctcgttaaatcttgtgtcagttcttat 978
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462  actgaattaccaagttcatctaaaaaatggaatctcgttaaatcttgtgtcagttcttat 521


Query: 979  attagatcaatcattcaactcttaactcaagtatctgaatcaaatttattattaattatt 1038
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522  attagatcaatcattcaactcttaactcaagtatctgaatcaaatttattattaattatt 581


Query: 1039 cttaaaggtttagaaaaagttatttgttattcttcatgttttacaaaatattcaaaaatg 1098
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582  cttaaaggtttagaaaaagttatttgttattcttcatgttttacaaaatattcaaaaatg 641


Query: 1099 ttattgaaacattta 1113
            |||||||||||||||
Sbjct: 642  ttattgaaacattta 656

 Score =  101 bits (51), Expect(2) = 0.0
 Identities = 51/51 (100%)
 Strand = Plus / Plus


Query: 493 tttgagtttcttggtgaaaatgataaagaattattaagtttcaatacagaa 543
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36  tttgagtttcttggtgaaaatgataaagaattattaagtttcaatacagaa 86

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,008,777,814
Number of extensions: 69487492
Number of successful extensions: 5829927
Number of sequences better than 10.0: 225
Length of query: 1113
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1089
Effective length of database: 97,308,875,965
Effective search space: 105969365925885
Effective search space used: 105969365925885
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 8
Homology vs Protein 
Query= Contig-U13660-1 (Contig-U13660-1Q) /CSM_Contig/Contig-U13660-1Q.Seq.d
         (1113 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9WV70) RecName: Full=Nucleolar complex protein 2 homolog;     ...    70   2e-10
AK133834_1(AK133834|pid:none) Mus musculus 8 days embryo whole b...    65   3e-09
AM269980_101(AM269980|pid:none) Aspergillus niger contig An01c03...    65   4e-09
BT059069_1(BT059069|pid:none) Salmo salar clone ssal-rgf-523-320...    65   4e-09
BT072685_1(BT072685|pid:none) Salmo salar clone ssal-rgf-536-233...    65   4e-09
(Q9ZPV5) RecName: Full=Nucleolar complex protein 2 homolog;     ...    64   1e-08
AJ720345_1(AJ720345|pid:none) Gallus gallus mRNA for hypothetica...    63   2e-08
T08706(T08706)hypothetical protein DKFZp564C186.1 - human (fragm...    63   2e-08
BC060851_1(BC060851|pid:none) Homo sapiens nucleolar complex ass...    62   3e-08
CR382126_45(CR382126|pid:none) Kluyveromyces lactis strain NRRL ...    62   5e-08
AK302229_1(AK302229|pid:none) Homo sapiens cDNA FLJ61647 complet...    58   7e-07
AK070504_1(AK070504|pid:none) Oryza sativa Japonica Group cDNA c...    57   1e-06
AK297320_1(AK297320|pid:none) Homo sapiens cDNA FLJ53536 complet...    52   4e-05
CU928168_406(CU928168|pid:none) Kluyveromyces thermotolerans str...    51   6e-05
CP001327_691(CP001327|pid:none) Micromonas sp. RCC299 chromosome...    46   0.002
(Q8LNU5) RecName: Full=Nucleolar complex protein 2 homolog;     ...    45   0.004
AK022756_1(AK022756|pid:none) Homo sapiens cDNA FLJ12694 fis, cl...    41   0.087
DQ536171_1(DQ536171|pid:none) Populus trichocarpa clone 19012879...    39   0.33
CP000557_2471(CP000557|pid:none) Geobacillus thermodenitrificans...    35   3.7
AE014186_62(AE014186|pid:none) Plasmodium falciparum 3D7 chromos...    35   3.7
CU469464_434(CU469464|pid:none) Candidatus Phytoplasma mali stra...    35   4.8
AE017348_259(AE017348|pid:none) Cryptococcus neoformans var. neo...    34   8.2

>(Q9WV70) RecName: Full=Nucleolar complex protein 2 homolog;
            Short=Protein NOC2 homolog; AltName: Full=NOC2-like;
            &BC020013_1(BC020013|pid:none)
          Length = 747

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 44/165 (26%), Positives = 85/165 (51%), Gaps = 1/165 (0%)
 Frame = +1

Query: 622  EKNQKEVLTSALLDSWISEANKNTTVQNVKKLVVAFRCASHAGSDLKEVDEV-PYKIVNT 798
            +KN+   +T A+++ W   +  + T +   ++V AFR A       +E  E   +++ ++
Sbjct: 143  KKNEPVPVTLAMVERWRQGSRHHLTPRLFHEVVQAFRAAVATTQGEQEAAETCRFQVADS 202

Query: 799  AVFNRTLLICLENMPKFFDKLLDYDSVKNSDQEITDANNKTELPSSSKKWNLVKSCVSSY 978
            AVFN  +  C+ ++     KLL   + K+S        N+  LPSSS  W  ++  V SY
Sbjct: 203  AVFNALVTFCIRDLCGCLQKLLFGKTPKDS--------NRLLLPSSSPLWGKLRVDVKSY 254

Query: 979  IRSIIQLLTQVSESNLLLIILKGLEKVICYSSCFTKYSKMLLKHL 1113
            + +++QL   ++E+ +   +L+ +  ++ Y   F K  +MLLK +
Sbjct: 255  LSAVVQLAACLAEATVSAAVLQHISSLVPYFLTFPKQCRMLLKRM 299

Lambda     K      H
   0.313    0.128    0.349

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 932,352,797
Number of extensions: 13283648
Number of successful extensions: 33644
Number of sequences better than 10.0: 22
Number of HSP's gapped: 33613
Number of HSP's successfully gapped: 22
Length of query: 371
Length of database: 1,051,180,864
Length adjustment: 130
Effective length of query: 241
Effective length of database: 630,428,194
Effective search space: 151933194754
Effective search space used: 151933194754
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.54  gvh: 0.28  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.06
 nuc: 0.15  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for Contig-U13660-1 is nuc
VS (DIR, S) 0
VH (FL, L) 3
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0