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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13658-1
Contig ID Contig-U13658-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13658-1 (Contig-U13658-1Q) /CSM_Contig/Contig-U13658-1Q.Seq.d
NNNNNNNNNNAGGTGAAGAAGATTATTCAGGAGAAGATAATTTTTCAGGA
GAAGAAGAGTATGAAGAATATGATTCAGATGATTCAGAACATGACGAATA
TATTCAACAAGAATCAGCTAAAAAAGAAGTAGATGATTTATCAACAATTG
GATTTAAAAAAGATGGTTTCGATTATTCAAAATATATGAGACCAATTGGT
GGTGGTGTTTTCATTCCAGCAATTTGGGATGTAAATGAATTAAAAAATAA
AAAGAATGGTATTGTTGAATTAGTTAAAAATAGTGAACCTGCACCATTTA
TGTTTGGTTTAGAAGAAATTAGTAAAGATTATAAAAAAGATGTTAAAGAT
TTAGAAGTTGATGAAGATATTAAAGAAGCATTAGTAGTTGATGATGAAGA
AGATGATTTCGAAGAGTTAGATGATGATTTTATTTTACAAGCAAATGGTG
GTACATTAGATGGTTTACAAGATGAAGTTGATGAAACTATTAATAAATTT
AATAATTTTAGAATAAAGAATAAAGCATATGATTTCATTGATGATGAAGA
GGATTATAATG
Gap no gap
Contig length 561
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5552756
End point 5553307
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U13658
List of clone(s) 

est1=VHG859Z,1,552
Translated Amino Acid sequence 
XXXGEEDYSGEDNFSGEEEYEEYDSDDSEHDEYIQQESAKKEVDDLSTIGFKKDGFDYSK
YMRPIGGGVFIPAIWDVNELKNKKNGIVELVKNSEPAPFMFGLEEISKDYKKDVKDLEVD
EDIKEALVVDDEEDDFEELDDDFILQANGGTLDGLQDEVDETINKFNNFRIKNKAYDFID
DEEDYN
Translated Amino Acid sequence (All Frames) 
Frame A:
xxxxvkkiiqekiifqekksmknmiqmiqnmtnifnknqlkkk*miyqqldlkkmvsiiq
ni*dqlvvvfsfqqfgm*mn*kikrmvlln*lkivnlhhlclv*kklvkiikkmlki*kl
mkilkkh**lmmkkmisks*mmilfykqmvvh*mvykmklmkllinliile*rikhmisl
mmkriim


Frame B:
xxxr*rrlfrrr*ffrrrrv*ri*fr*frt*riystris*krsr*finnwi*krwfrlfk
iyetnwwwcfhssnlgck*ikk*kewyc*is*k**tctiyvwfrrn**rl*krc*rfrs*
*ry*rsiss***rr*frrvr**fyftskwwyirwftr*s**ny**i**f*nke*si*fh*
**rgl*


Frame C:
XXXGEEDYSGEDNFSGEEEYEEYDSDDSEHDEYIQQESAKKEVDDLSTIGFKKDGFDYSK
YMRPIGGGVFIPAIWDVNELKNKKNGIVELVKNSEPAPFMFGLEEISKDYKKDVKDLEVD
EDIKEALVVDDEEDDFEELDDDFILQANGGTLDGLQDEVDETINKFNNFRIKNKAYDFID
DEEDYN
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13658-1 (Contig-U13658-1Q)
/CSM_Contig/Contig-U13658-1Q.Seq.d
         (561 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13658-1 (Contig-U13658-1Q) /CSM_Contig/Conti...  1021  0.0
Contig-U11513-1 (Contig-U11513-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U14703-1 (Contig-U14703-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U14691-1 (Contig-U14691-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U13991-1 (Contig-U13991-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U11741-1 (Contig-U11741-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U11458-1 (Contig-U11458-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U11380-1 (Contig-U11380-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U07029-1 (Contig-U07029-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U14559-1 (Contig-U14559-1Q) /CSM_Contig/Conti...    36  0.039

>Contig-U13658-1 (Contig-U13658-1Q) /CSM_Contig/Contig-U13658-1Q.Seq.d
          Length = 561

 Score = 1021 bits (515), Expect = 0.0
 Identities = 539/551 (97%)
 Strand = Plus / Plus

                                                                       
Query: 11  aggtgaagaagattattcaggagaagataatttttcaggagaagaagagtatgaagaata 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  aggtgaagaagattattcaggagaagataatttttcaggagaagaagagtatgaagaata 70

                                                                       
Query: 71  tgattcagatgattcagaacatgacgaatatattcaacaagaatcagctaaaaaagaagt 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  tgattcagatgattcagaacatgacgaatatattcaacaagaatcagctaaaaaagaagt 130

                                                                       
Query: 131 agatgatttatcaacaattggatttaaaaaagatggtttcgattattcaaaatatatgag 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 agatgatttatcaacaattggatttaaaaaagatggtttcgattattcaaaatatatgag 190

                                                                       
Query: 191 accaattggtggtggtgttttcattccagcaatttgggatgtaaatgaattnnnnnnnnn 250
           |||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct: 191 accaattggtggtggtgttttcattccagcaatttgggatgtaaatgaattaaaaaataa 250

                                                                       
Query: 251 nnngaatggtattgttgaattagttaaaaatagtgaacctgcaccatttatgtttggttt 310
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aaagaatggtattgttgaattagttaaaaatagtgaacctgcaccatttatgtttggttt 310

                                                                       
Query: 311 agaagaaattagtaaagattataaaaaagatgttaaagatttagaagttgatgaagatat 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agaagaaattagtaaagattataaaaaagatgttaaagatttagaagttgatgaagatat 370

                                                                       
Query: 371 taaagaagcattagtagttgatgatgaagaagatgatttcgaagagttagatgatgattt 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 taaagaagcattagtagttgatgatgaagaagatgatttcgaagagttagatgatgattt 430

                                                                       
Query: 431 tattttacaagcaaatggtggtacattagatggtttacaagatgaagttgatgaaactat 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tattttacaagcaaatggtggtacattagatggtttacaagatgaagttgatgaaactat 490

                                                                       
Query: 491 taataaatttaataattttagaataaagaataaagcatatgatttcattgatgatgaaga 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 taataaatttaataattttagaataaagaataaagcatatgatttcattgatgatgaaga 550

                      
Query: 551 ggattataatg 561
           |||||||||||
Sbjct: 551 ggattataatg 561


>Contig-U11513-1 (Contig-U11513-1Q) /CSM_Contig/Contig-U11513-1Q.Seq.d
          Length = 2108

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 389  tgatgatgaagaagatgatt 408
            ||||||||||||||||||||
Sbjct: 1703 tgatgatgaagaagatgatt 1684


 Score = 28.2 bits (14), Expect = 9.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                          
Query: 491  taataaatttaata 504
            ||||||||||||||
Sbjct: 1133 taataaatttaata 1146


>Contig-U14703-1 (Contig-U14703-1Q) /CSM_Contig/Contig-U14703-1Q.Seq.d
          Length = 932

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 389 tgatgatgaagaagatgat 407
           |||||||||||||||||||
Sbjct: 447 tgatgatgaagaagatgat 429


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,933
Number of Sequences: 6905
Number of extensions: 14933
Number of successful extensions: 1957
Number of sequences better than 10.0: 659
length of query: 561
length of database: 5,674,871
effective HSP length: 16
effective length of query: 545
effective length of database: 5,564,391
effective search space: 3032593095
effective search space used: 3032593095
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12.13
Homology vs DNA 
Query= Contig-U13658-1 (Contig-U13658-1Q) /CSM_Contig/Contig-U13658-1Q.Seq.d
         (561 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ440731) Dictyostelium discoideum cDNA clone:ddv44f16, 3' ...   611   0.0    2
(AC116960) Dictyostelium discoideum chromosome 2 map complem...   458   0.0    3
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    40   3e-05  14
(BA000016) Clostridium perfringens str. 13 DNA, complete gen...    42   5e-05  17
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         38   1e-04  19
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    36   1e-04  18
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   5e-04  12
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    38   0.002  17
(CP000246) Clostridium perfringens ATCC 13124, complete genome.    42   0.003  14
(CZ536302) SRAA-aad02e09.b1 Strongyloides ratti whole genome...    44   0.005  2
(CP000361) Arcobacter butzleri RM4018, complete genome.            36   0.005  19
(DV739408) ID0AFF13BH05CM1 ID0AFF Acyrthosiphon pisum cDNA c...    34   0.006  3
(AL031746) Plasmodium falciparum DNA from MAL1P3.                  40   0.010  6
(ER567989) 1093015778900 Global-Ocean-Sampling_GS-36-01-01-2...    38   0.014  3
(CP000678) Methanobrevibacter smithii ATCC 35061, complete g...    36   0.019  16
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    36   0.019  11
(AE017263) Mesoplasma florum L1 complete genome.                   42   0.026  13
(CP000814) Campylobacter jejuni subsp. jejuni 81116, complet...    34   0.026  15
(CP000025) Campylobacter jejuni RM1221, complete genome.           32   0.041  17
(FF298586) 279325036 Pea aphid whole body normalized full le...    34   0.044  3
(AC179638) Strongylocentrotus purpuratus clone R3-1025E6, WO...    42   0.046  3
(BH146662) ENTPN88TF Entamoeba histolytica Sheared DNA Entam...    38   0.058  3
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    40   0.059  16
(DU001216) 289799 Tomato MboI BAC Library Solanum lycopersic...    40   0.067  2
(CR382138) Debaryomyces hansenii chromosome F of strain CBS7...    36   0.075  16
(BZ503791) BONHJ49TF BO_1.6_2_KB_tot Brassica oleracea genom...    50   0.086  1
(AM518304) Paracentrotus lividus EST, clone MPMGp1171F0344Q,...    50   0.086  1
(CV553785) TgESTzyq94g07.y2 Tg COUG Tachyzoite cDNA Library ...    50   0.086  1
(ED580314) SALK_033316.56.00.x Arabidopsis thaliana TDNA ins...    42   0.091  2
(BH612809) SALK_033316 Arabidopsis thaliana TDNA insertion l...    42   0.095  2
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    34   0.098  7
(AC138040) Sus scrofa clone RP44-192O5, WORKING DRAFT SEQUEN...    44   0.11   4
(FE939768) AHAI-aaa63a07.b2 Pristionchus_pacificus_AHAI1_EST...    40   0.12   2
(AF079447) Dictyostelium discoideum myosin heavy chain kinas...    44   0.15   2
(AE017308) Mycoplasma mobile 163K complete genome.                 36   0.16   14
(AE017198) Lactobacillus johnsonii NCC 533, complete genome.       36   0.18   15
(AP006852) Candida albicans genomic DNA, chromosome 7, compl...    38   0.18   2
(EK511126) 1095515479718 Global-Ocean-Sampling_GS-32-01-01-1...    40   0.20   2
(DN314672) PL06018B2H04 cDNA from juvenile hermaphodites Sch...    34   0.20   3
(M99387) Xenopus laevis tanabin mRNA, complete cds.                36   0.20   3
(AM180355) Clostridium difficile 630 complete genome.              34   0.21   18
(CP000742) Methanococcus vannielii SB, complete genome.            36   0.22   18
(AX348975) Sequence 433 from Patent WO0202807.                     34   0.22   2
(CW524520) OP__Ba0048D05.f OP__Ba Oryza punctata genomic clo...    30   0.29   4
(AM467906) Vitis vinifera contig VV78X194733.17, whole genom...    44   0.31   2
(BX927349) Zebrafish DNA sequence from clone DKEY-84K15 in l...    36   0.31   6
(AC122303) Mus musculus BAC clone RP23-279L13 from 6, comple...    48   0.34   1
(EJ533926) 1092955247761 Global-Ocean-Sampling_GS-29-01-01-1...    48   0.34   1
(AL407504) T3 end of clone AV0AA001F10 of library AV0AA from...    48   0.34   1
(AG577004) Mus musculus molossinus DNA, clone:MSMg01-501G09....    48   0.34   1
(CT845418) Oryza sativa Indica Group EST sequence:CONTIG6295.      48   0.34   1
(CA833996) MCS003F06_153270 Ice plant Lambda Uni-Zap XR expr...    48   0.34   1
(CA832902) MCS013G04_151082 Ice plant Lambda Uni-Zap XR expr...    48   0.34   1
(FK160092) XABT186294.b1 Gateway compatible cien cDNA librar...    48   0.34   1
(FK078556) XABT135171.b1 Gateway compatible cien cDNA librar...    48   0.34   1
(AC201926) Mus musculus chromosome Y clone CH36-258I21, WORK...    38   0.39   5
(CU179680) Mycoplasma agalactiae PG2 chromosome, complete se...    32   0.45   13
(FF690607) XABT103351.rev Gateway compatible cien cDNA libra...    44   0.51   2
(DN950129) Ost1T_565_3' Oak tissue culture growing 1 hour in...    40   0.51   2
(FC815894) Sr_pAMT7_04h23_T7 S. ratti mixed stage pAMP Stron...    44   0.52   2
(CP000745) Methanococcus maripaludis C7, complete genome.          40   0.54   16
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    46   0.55   17
(EK188613) 1095460010577 Global-Ocean-Sampling_GS-31-01-01-1...    36   0.55   3
(CV460611) aof02-9ms1-g12 Aof02 Asparagus officinalis cDNA c...    34   0.56   3
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    34   0.57   16
(FF570395) TTCA230TG Tetrahymena thermophila CU428 log phase...    36   0.58   2
(EV829611) FMMAC07TF Tetrahymena thermophila SB210 cDNA libr...    36   0.60   2
(DY680044) TTDA502TO Tetrahymena thermophila EST library str...    36   0.62   2
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont...    32   0.63   8
(AC195651) Mus musculus BAC clone CH36-433P10 from chromosom...    38   0.63   4
(AF210453) Drosophila melanogaster dynein heavy chain mRNA, ...    46   0.64   2
(FF566543) TTBA266TG Tetrahymena thermophila CU428 log phase...    36   0.65   2
(EH710263) CCIS9569.b1_B18.ab1 CCI(LMS) chicory Cichorium in...    38   0.66   2
(DY679513) TTDA017TGB Tetrahymena thermophila EST library st...    36   0.66   2
(AP010106) Lotus japonicus genomic DNA, chromosome 4, clone:...    38   0.66   6
(AB013165) Idea leuconoe mitochondrial ND5 gene for NADH deh...    32   0.66   3
(CX591514) TTE00034347 Amplicon Express - Conjugative Form T...    36   0.66   2
(CN593818) TTE00012664 Normalized large Tetrahymena thermoph...    36   0.66   2
(CN593882) TTE00010796 Normalized large Tetrahymena thermoph...    36   0.66   2
(CN593982) TTE00013067 Normalized large Tetrahymena thermoph...    36   0.66   2
(CN594205) TTE00009386 Normalized large Tetrahymena thermoph...    36   0.67   2
(CN594214) TTE00006344 Normalized large Tetrahymena thermoph...    36   0.67   2
(DB826893) Nilaparvata lugens mRNA, EST clone:NLHT7483, 5' e...    40   0.67   2
(CN594396) TTE00009778 Normalized large Tetrahymena thermoph...    36   0.67   2
(CN594348) TTE00010974 Normalized large Tetrahymena thermoph...    36   0.67   2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    36   0.67   6
(CN594640) TTE00013600 Normalized large Tetrahymena thermoph...    36   0.67   2
(CN594617) TTE00014868 Normalized large Tetrahymena thermoph...    36   0.67   2
(CN594752) TTE00011870 Normalized large Tetrahymena thermoph...    36   0.67   2
(CN594860) TTE00006389 Normalized large Tetrahymena thermoph...    36   0.67   2
(CN594913) TTE00006481 Normalized large Tetrahymena thermoph...    36   0.68   2
(CN594891) TTE00015216 Normalized large Tetrahymena thermoph...    36   0.68   2
(AZ551618) ENTDV54TR Entamoeba histolytica Sheared DNA Entam...    38   0.68   2
(CN595360) TTE00011707 Normalized large Tetrahymena thermoph...    36   0.68   2
(CN595608) TTE00010105 Normalized large Tetrahymena thermoph...    36   0.68   2
(FH642347) CHO_OF4570xh11r1.ab1 CHO_OF4 Nicotiana tabacum ge...    36   0.69   2
(CN595895) TTE00006966 Normalized large Tetrahymena thermoph...    36   0.69   2
(CN595860) TTE00009163 Normalized large Tetrahymena thermoph...    36   0.69   2
(DY680043) TTDA502TG Tetrahymena thermophila EST library str...    36   0.69   2
(CN596011) TTE00012536 Normalized large Tetrahymena thermoph...    36   0.69   2

>(BJ440731) Dictyostelium discoideum cDNA clone:ddv44f16, 3' end,
           single read.
          Length = 552

 Score =  611 bits (308), Expect(2) = 0.0
 Identities = 308/308 (100%)
 Strand = Plus / Minus


Query: 254 gaatggtattgttgaattagttaaaaatagtgaacctgcaccatttatgtttggtttaga 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gaatggtattgttgaattagttaaaaatagtgaacctgcaccatttatgtttggtttaga 250


Query: 314 agaaattagtaaagattataaaaaagatgttaaagatttagaagttgatgaagatattaa 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 agaaattagtaaagattataaaaaagatgttaaagatttagaagttgatgaagatattaa 190


Query: 374 agaagcattagtagttgatgatgaagaagatgatttcgaagagttagatgatgattttat 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 agaagcattagtagttgatgatgaagaagatgatttcgaagagttagatgatgattttat 130


Query: 434 tttacaagcaaatggtggtacattagatggtttacaagatgaagttgatgaaactattaa 493
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tttacaagcaaatggtggtacattagatggtttacaagatgaagttgatgaaactattaa 70


Query: 494 taaatttaataattttagaataaagaataaagcatatgatttcattgatgatgaagagga 553
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  taaatttaataattttagaataaagaataaagcatatgatttcattgatgatgaagagga 10


Query: 554 ttataatg 561
           ||||||||
Sbjct: 9   ttataatg 2

 Score =  458 bits (231), Expect(2) = 0.0
 Identities = 231/231 (100%)
 Strand = Plus / Minus


Query: 11  aggtgaagaagattattcaggagaagataatttttcaggagaagaagagtatgaagaata 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aggtgaagaagattattcaggagaagataatttttcaggagaagaagagtatgaagaata 493


Query: 71  tgattcagatgattcagaacatgacgaatatattcaacaagaatcagctaaaaaagaagt 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tgattcagatgattcagaacatgacgaatatattcaacaagaatcagctaaaaaagaagt 433


Query: 131 agatgatttatcaacaattggatttaaaaaagatggtttcgattattcaaaatatatgag 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 agatgatttatcaacaattggatttaaaaaagatggtttcgattattcaaaatatatgag 373


Query: 191 accaattggtggtggtgttttcattccagcaatttgggatgtaaatgaatt 241
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 accaattggtggtggtgttttcattccagcaatttgggatgtaaatgaatt 322

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 840,381,201
Number of extensions: 57231480
Number of successful extensions: 5141543
Number of sequences better than 10.0: 682
Length of query: 561
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 538
Effective length of database: 93,106,754,628
Effective search space: 50091433989864
Effective search space used: 50091433989864
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 8
Homology vs Protein 
Query= Contig-U13658-1 (Contig-U13658-1Q) /CSM_Contig/Contig-U13658-1Q.Seq.d
         (561 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A71978(A71978) methyl-accepting chemotaxis protein (MCP) - Helic...    35   1.8

>A71978(A71978) methyl-accepting chemotaxis protein (MCP) -
           Helicobacter pylori (strain J99)
           &AE001439_75(AE001439|pid:none)
          Length = 673

 Score = 34.7 bits (78), Expect = 1.8
 Identities = 18/46 (39%), Positives = 28/46 (60%)
 Frame = +1

Query: 58  SMKNMIQMIQNMTNIFNKNQLKKK*MIYQQLDLKKMVSIIQNI*DQ 195
           S+KN  Q ++ +TNI      K + MI Q  D+K +V +I++I DQ
Sbjct: 513 SLKNTTQSLEEITNIITMIDSKSQEMISQGEDIKSVVDMIRDIADQ 558

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 498,793,846
Number of extensions: 7708386
Number of successful extensions: 15998
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15998
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 1,051,180,864
Length adjustment: 121
Effective length of query: 66
Effective length of database: 659,557,225
Effective search space: 43530776850
Effective search space used: 43530776850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.10  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for Contig-U13658-1 is nuc
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0