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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13654-1
Contig ID Contig-U13654-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13654-1 (Contig-U13654-1Q) /CSM_Contig/Contig-U13654-1Q.Seq.d
AAAATTTTTTTTTCTAACACACAACAGACCATTTTTATTATCGTATTATT
ATTAACAGGAAAATAATAGTAATAAAAGTAATAATAAAATGTCAGATTTT
ATTGGTTTATCAGATGCAGATAATTATGATAATATTGAAGAATCAAATGG
AAATGAATACGTTATTGATGACAGTTTACCGTTAATTGAAAAAATTAAAA
AATATGTTAAAAGTGAATTAGTGCTTCATACGATTATATGTTATTAGAGA
ATTTTCTGATTTAATTAGAATTCAATTTGAACAAGCAAATGAAATATTAA
TAACATTTATAGAGGAAGCAGTAACAGATAATGAACCAGTGATTAGACAA
GCATTAGTAGAACAAATTCCATCAATTAGTGAATGTTATATTCAATTTGG
TAGAGAGGATGGTTATCAAAAAGTATTGAAAAATCTATTACCAATTGTAG
CTCAATTAACCACTGACAGAAATCCACAAGTTAGAATGTCAGCCGTTGAA
TCATTACAAGATATGGCTAGAATCATTAGACATGAAGACATTGAAGTTCA
TTTAATACCTTTTATTAAAAGTTTAGTTAATGATTCAACTGATGAAGAGC
ATAGAGTTCAAGCTGCAAATCTTTGCCA
Gap no gap
Contig length 628
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4575729
End point 4575104
Strand (PLUS/MINUS) MINUS
Number of clones 6
Number of EST 6
Link to clone list U13654
List of clone(s) 

est1=VHC277F,1,595
est2=VHH612F,1,514
est3=VHJ842F,2,625
est4=VHQ475F,14,625
est5=VHG638F,16,626
est6=VHD303F,120,266
Translated Amino Acid sequence 
nfff*httdhfyyriiinrkiivikviikcqillvyqmqiimiilknqmemntllmtvyr
*lkklknmlkvn*CFIRLYVIREFSDLIRIQFEQANEILITFIEEAVTDNEPVIRQALVE
QIPSISECYIQFGREDGYQKVLKNLLPIVAQLTTDRNPQVRMSAVESLQDMARIIRHEDI
EVHLIPFIKSLVNDSTDEEHRVQAANLC
Translated Amino Acid sequence (All Frames) 
Frame A:
kiffsntqqtifiivllltgk****k***nvrfywfircr*l**y*rikwk*iry**qft
vn*kn*kic*k*isasydymllenfli*lefnlnkqmky**hl*rkq*qimnq*ldkh**
nkfhqlvnvifnlvermvikky*kiyyql*ln*plteihklecqplnhykiwlesldmkt
lkfi*ylllkv*lmiqlmksiefklqifa


Frame B:
kffflthnrpfllsyyy*qennsnksnnkmsdfiglsdadnydnieesngneyviddslp
liekikkyvkselvlhtiicy*rif*fn*nsi*tsk*ninniyrgssnr**tsd*tsisr
tnsin**mlysiw*rgwlsksieksitncssinh*qksts*nvsr*iitryg*nh*t*rh
*ssfntfy*kfs**fn**ra*sssckslp


Frame C:
nfff*httdhfyyriiinrkiivikviikcqillvyqmqiimiilknqmemntllmtvyr
*lkklknmlkvn*CFIRLYVIREFSDLIRIQFEQANEILITFIEEAVTDNEPVIRQALVE
QIPSISECYIQFGREDGYQKVLKNLLPIVAQLTTDRNPQVRMSAVESLQDMARIIRHEDI
EVHLIPFIKSLVNDSTDEEHRVQAANLC
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13654-1 (Contig-U13654-1Q)
/CSM_Contig/Contig-U13654-1Q.Seq.d
         (628 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13654-1 (Contig-U13654-1Q) /CSM_Contig/Conti...   844  0.0
Contig-U04354-1 (Contig-U04354-1Q) /CSM_Contig/Conti...    46  5e-05
Contig-U13980-1 (Contig-U13980-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U12605-1 (Contig-U12605-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U12098-1 (Contig-U12098-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U11842-1 (Contig-U11842-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U09161-1 (Contig-U09161-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U09112-1 (Contig-U09112-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U07089-1 (Contig-U07089-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U06929-1 (Contig-U06929-1Q) /CSM_Contig/Conti...    44  2e-04

>Contig-U13654-1 (Contig-U13654-1Q) /CSM_Contig/Contig-U13654-1Q.Seq.d
          Length = 628

 Score =  844 bits (426), Expect = 0.0
 Identities = 426/426 (100%)
 Strand = Plus / Plus

                                                                       
Query: 203 tatgttaaaagtgaattagtgcttcatacgattatatgttattagagaattttctgattt 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tatgttaaaagtgaattagtgcttcatacgattatatgttattagagaattttctgattt 262

                                                                       
Query: 263 aattagaattcaatttgaacaagcaaatgaaatattaataacatttatagaggaagcagt 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aattagaattcaatttgaacaagcaaatgaaatattaataacatttatagaggaagcagt 322

                                                                       
Query: 323 aacagataatgaaccagtgattagacaagcattagtagaacaaattccatcaattagtga 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aacagataatgaaccagtgattagacaagcattagtagaacaaattccatcaattagtga 382

                                                                       
Query: 383 atgttatattcaatttggtagagaggatggttatcaaaaagtattgaaaaatctattacc 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atgttatattcaatttggtagagaggatggttatcaaaaagtattgaaaaatctattacc 442

                                                                       
Query: 443 aattgtagctcaattaaccactgacagaaatccacaagttagaatgtcagccgttgaatc 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aattgtagctcaattaaccactgacagaaatccacaagttagaatgtcagccgttgaatc 502

                                                                       
Query: 503 attacaagatatggctagaatcattagacatgaagacattgaagttcatttaataccttt 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 attacaagatatggctagaatcattagacatgaagacattgaagttcatttaataccttt 562

                                                                       
Query: 563 tattaaaagtttagttaatgattcaactgatgaagagcatagagttcaagctgcaaatct 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tattaaaagtttagttaatgattcaactgatgaagagcatagagttcaagctgcaaatct 622

                 
Query: 623 ttgcca 628
           ||||||
Sbjct: 623 ttgcca 628


 Score =  347 bits (175), Expect = 9e-96
 Identities = 175/175 (100%)
 Strand = Plus / Plus

                                                                       
Query: 14  ctaacacacaacagaccatttttattatcgtattattattaacaggaaaataatagtaat 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14  ctaacacacaacagaccatttttattatcgtattattattaacaggaaaataatagtaat 73

                                                                       
Query: 74  aaaagtaataataaaatgtcagattttattggtttatcagatgcagataattatgataat 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  aaaagtaataataaaatgtcagattttattggtttatcagatgcagataattatgataat 133

                                                                  
Query: 134 attgaagaatcaaatggaaatgaatacgttattgatgacagtttaccgttaattg 188
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 attgaagaatcaaatggaaatgaatacgttattgatgacagtttaccgttaattg 188


>Contig-U04354-1 (Contig-U04354-1Q) /CSM_Contig/Contig-U04354-1Q.Seq.d
          Length = 515

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 60  aaaataatagtaataaaagtaataataaaat 90
           ||||||||||||||||||  |||||||||||
Sbjct: 448 aaaataatagtaataaaataaataataaaat 418


>Contig-U13980-1 (Contig-U13980-1Q) /CSM_Contig/Contig-U13980-1Q.Seq.d
          Length = 1556

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 62 aataatagtaataaaagtaataataa 87
          |||||||||||||| |||||||||||
Sbjct: 9  aataatagtaataatagtaataataa 34


 Score = 32.2 bits (16), Expect = 0.69
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                  
Query: 62 aataatagtaataaaagtaataat 85
          |||||||||||||| | |||||||
Sbjct: 18 aataatagtaataataataataat 41


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,996
Number of Sequences: 6905
Number of extensions: 21996
Number of successful extensions: 2072
Number of sequences better than 10.0: 505
length of query: 628
length of database: 5,674,871
effective HSP length: 16
effective length of query: 612
effective length of database: 5,564,391
effective search space: 3405407292
effective search space used: 3405407292
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.13
Homology vs DNA 
Query= Contig-U13654-1 (Contig-U13654-1Q) /CSM_Contig/Contig-U13654-1Q.Seq.d
         (628 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ421960) Dictyostelium discoideum cDNA clone:ddv44k10, 5' ...   787   0.0    4
(BJ427847) Dictyostelium discoideum cDNA clone:ddv63f20, 5' ...   785   0.0    4
(BJ423751) Dictyostelium discoideum cDNA clone:ddv50d12, 5' ...   775   0.0    4
(BJ419356) Dictyostelium discoideum cDNA clone:ddv35i20, 5' ...   716   0.0    5
(BJ422490) Dictyostelium discoideum cDNA clone:ddv46g04, 5' ...   521   0.0    4
(BJ419743) Dictyostelium discoideum cDNA clone:ddv37f01, 5' ...   129   2e-58  2
(AF482384) Dictyostelium discoideum ABC transporter AbcG5 (a...   103   2e-52  3
(ED269978) AUAC-aaz70g11.b1 Ascaris suum whole genome shotgu...    54   0.006  1
(CP000825) Prochlorococcus marinus str. MIT 9215, complete g...    38   0.010  11
(CP000551) Prochlorococcus marinus str. AS9601, complete gen...    38   0.027  14
(BH160585) ENTTF81TR Entamoeba histolytica Sheared DNA Entam...    34   0.36   3
(CU693417) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.38   1
(DD391766) Method and nucleic acids for the improved treatme...    38   0.41   4
(CQ807022) Sequence 472 from Patent WO2004035803.                  38   0.41   4
(AX345575) Sequence 646 from Patent WO0200928.                     38   0.69   4
(AL513305) Human DNA sequence from clone RP11-415H9 on chrom...    38   0.70   4
(AC093280) Homo sapiens chromosome 5 clone RP11-409J3, WORKI...    42   1.00   3
(DQ788362) Bombus potanini voucher SC113 long-wavelength rho...    46   1.5    1
(DQ788340) Bombus impetuosus voucher SC165 long-wavelength r...    46   1.5    1
(DQ788333) Bombus fragrans voucher SC061 long-wavelength rho...    46   1.5    1
(DQ788316) Bombus atripes voucher SC066 long-wavelength rhod...    46   1.5    1
(AF493027) Bombus subterraneus long-wavelength rhodopsin gen...    46   1.5    1
(AF493004) Bombus tricornis long-wavelength rhodopsin gene, ...    46   1.5    1
(AB114682) Schistosoma haematobium mRNA for paramyosin, comp...    46   1.5    1
(AC105524) Rattus norvegicus clone CH230-212C17, *** SEQUENC...    46   1.5    1
(EW995889) LJGU-M-8_F09 Adult female Lutzomyia longipalpis m...    46   1.5    1
(AC138935) Homo sapiens chromosome 5 clone RP11-690E18, WORK...    42   1.6    3
(CP000576) Prochlorococcus marinus str. MIT 9301, complete g...    38   2.3    12
(AL161667) Arabidopsis thaliana DNA chromosome 3, BAC clone ...    32   2.8    5
(BH159685) ENTRC48TR Entamoeba histolytica Sheared DNA Entam...    36   3.7    3
(AE017263) Mesoplasma florum L1 complete genome.                   34   3.9    14
(CF116082) et5-1.z1 et adult sheep skin library Ovis aries c...    36   4.2    2
(AC139276) Homo sapiens chromosome 5 clone RP11-607K20, WORK...    42   4.6    4
(AC092293) Homo sapiens chromosome 16 clone CTD-2555F10, WOR...    36   5.8    3
(BV034264) S212P60249FC9.T0 CZECHII/Ei Mus musculus STS geno...    44   6.0    1
(AL669901) Mouse DNA sequence from clone RP23-35N5 on chromo...    44   6.0    1
(AM444276) Vitis vinifera contig VV78X166924.5, whole genome...    44   6.0    1
(DJ003620) Method for determining risk of developing type 2 ...    44   6.0    1
(CQ514621) Sequence 46488 from Patent WO0160860.                   44   6.0    1
(CQ484795) Sequence 16662 from Patent WO0160860.                   44   6.0    1
(BD460244) Diagnosis of Diseases Associated with Cell Cycle.       44   6.0    1
(BD452166) Diagnosis of Diseases Associated with Cell Cycle.       44   6.0    1
(AX344184) Sequence 31 from Patent WO0200926.                      44   6.0    1
(AX251780) Sequence 41 from Patent WO0168911.                      44   6.0    1
(AC090514) Homo sapiens chromosome 15 clone RP11-2O16 map 15...    44   6.0    1
(AC133723) Rattus norvegicus clone CH230-107H7, *** SEQUENCI...    44   6.0    1
(AC111506) Rattus norvegicus clone CH230-132C20, *** SEQUENC...    44   6.0    1
(AC219813) Bos taurus clone CH240-321H8, WORKING DRAFT SEQUE...    44   6.0    1
(AC177099) Strongylocentrotus purpuratus clone R3-4012L22, W...    44   6.0    1
(AC021899) Homo sapiens clone RP11-2O16, WORKING DRAFT SEQUE...    44   6.0    1
(EJ487452) 1095403513685 Global-Ocean-Sampling_GS-28-01-01-1...    44   6.0    1
(EI349659) GM_WBc0097F08.f GM_WBc Glycine max genomic clone ...    44   6.0    1
(DE542381) Bombyx mori genomic DNA, Fosmid clone:GBMFno172_o...    44   6.0    1
(CE666823) tigr-gss-dog-17000313693727 Dog Library Canis lup...    44   6.0    1
(BZ537882) OGAJQ20TM ZM2_0.7_1.5_KB Zea mays genomic clone Z...    44   6.0    1
(ES631336) NGPTB75TR NGPP Nasonia giraulti cDNA, mRNA sequence.    44   6.0    1
(ES627382) NGPRE03TR NGPP Nasonia giraulti cDNA, mRNA sequence.    44   6.0    1
(ES623717) NGPPE62TR NGPP Nasonia giraulti cDNA, mRNA sequence.    44   6.0    1
(ES619400) NGPCZ79TR NGPA Nasonia giraulti cDNA, mRNA sequence.    44   6.0    1
(ES617186) NGPBQ64TR NGPA Nasonia giraulti cDNA, mRNA sequence.    44   6.0    1
(EE619764) CHWM6995.b1_E21.ab1 CHW(LMS) silverleaf sunflower...    44   6.0    1
(CV210471) EST870181 non-normalized T1 cDNA library Trichomo...    44   6.0    1
(BG190074) RST9130 Athersys RAGE Library Homo sapiens cDNA, ...    44   6.0    1
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    36   7.2    17
(AC147587) Ornithorhynchus anatinus clone OA_Bb-560F18, WORK...    40   9.7    3
(BZ050455) jnr41f12.b1 B.oleracea001 Brassica oleracea genom...    40   9.9    2
(AC140811) Homo sapiens chromosome 16 clone RP11-1383H4, WOR...    32   9.9    2
(AC140812) Homo sapiens chromosome 16 clone RP11-1385H21, WO...    32   10.0   2

>(BJ421960) Dictyostelium discoideum cDNA clone:ddv44k10, 5' end,
           single read.
          Length = 612

 Score =  787 bits (397), Expect(4) = 0.0
 Identities = 397/397 (100%)
 Strand = Plus / Plus


Query: 232 gattatatgttattagagaattttctgatttaattagaattcaatttgaacaagcaaatg 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gattatatgttattagagaattttctgatttaattagaattcaatttgaacaagcaaatg 275


Query: 292 aaatattaataacatttatagaggaagcagtaacagataatgaaccagtgattagacaag 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaatattaataacatttatagaggaagcagtaacagataatgaaccagtgattagacaag 335


Query: 352 cattagtagaacaaattccatcaattagtgaatgttatattcaatttggtagagaggatg 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cattagtagaacaaattccatcaattagtgaatgttatattcaatttggtagagaggatg 395


Query: 412 gttatcaaaaagtattgaaaaatctattaccaattgtagctcaattaaccactgacagaa 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gttatcaaaaagtattgaaaaatctattaccaattgtagctcaattaaccactgacagaa 455


Query: 472 atccacaagttagaatgtcagccgttgaatcattacaagatatggctagaatcattagac 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 atccacaagttagaatgtcagccgttgaatcattacaagatatggctagaatcattagac 515


Query: 532 atgaagacattgaagttcatttaataccttttattaaaagtttagttaatgattcaactg 591
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 atgaagacattgaagttcatttaataccttttattaaaagtttagttaatgattcaactg 575


Query: 592 atgaagagcatagagttcaagctgcaaatctttgcca 628
           |||||||||||||||||||||||||||||||||||||
Sbjct: 576 atgaagagcatagagttcaagctgcaaatctttgcca 612

 Score =  194 bits (98), Expect(4) = 0.0
 Identities = 98/98 (100%)
 Strand = Plus / Plus


Query: 91  gtcagattttattggtttatcagatgcagataattatgataatattgaagaatcaaatgg 150
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  gtcagattttattggtttatcagatgcagataattatgataatattgaagaatcaaatgg 135


Query: 151 aaatgaatacgttattgatgacagtttaccgttaattg 188
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 136 aaatgaatacgttattgatgacagtttaccgttaattg 173

 Score = 87.7 bits (44), Expect(4) = 0.0
 Identities = 44/44 (100%)
 Strand = Plus / Plus


Query: 16 aacacacaacagaccatttttattatcgtattattattaacagg 59
          ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aacacacaacagaccatttttattatcgtattattattaacagg 44

 Score = 48.1 bits (24), Expect(4) = 0.0
 Identities = 27/28 (96%)
 Strand = Plus / Plus


Query: 203 tatgttaaaagtgaattagtgcttcata 230
           |||||||||||||||||||| |||||||
Sbjct: 188 tatgttaaaagtgaattagttcttcata 215

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 678,224,521
Number of extensions: 43719462
Number of successful extensions: 3160536
Number of sequences better than 10.0: 69
Length of query: 628
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 605
Effective length of database: 93,106,754,628
Effective search space: 56329586549940
Effective search space used: 56329586549940
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 8
Homology vs Protein 
Query= Contig-U13654-1 (Contig-U13654-1Q) /CSM_Contig/Contig-U13654-1Q.Seq.d
         (628 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM502236_67(AM502236|pid:none) Leishmania infantum chromosome 18.      90   5e-20
BC168638_1(BC168638|pid:none) Xenopus tropicalis cDNA clone IMAG...    61   3e-08
AJ851434_1(AJ851434|pid:none) Gallus gallus partial mRNA for hyp...    60   4e-08
CR857670_1(CR857670|pid:none) Pongo abelii mRNA; cDNA DKFZp469D1...    58   2e-07
(Q8K2V1) RecName: Full=Serine/threonine-protein phosphatase 4 re...    49   9e-05
BC029761_1(BC029761|pid:none) Mus musculus protein phosphatase 4...    49   9e-05
EU561360_1(EU561360|pid:none) Carassius auratus protein phosphat...    49   1e-04
AK315106_1(AK315106|pid:none) Homo sapiens cDNA, FLJ96065, highl...    49   1e-04
AK292538_1(AK292538|pid:none) Homo sapiens cDNA FLJ78690 complet...    49   1e-04
(Q8VI02) RecName: Full=Serine/threonine-protein phosphatase 4 re...    49   2e-04
AB385198_1(AB385198|pid:none) Synthetic construct DNA, clone: pF...    49   2e-04
BC048878_1(BC048878|pid:none) Danio rerio protein phosphatase 4,...    48   2e-04
BC076964_1(BC076964|pid:none) Xenopus tropicalis protein phospha...    48   3e-04
S65952(S65952;S72499)[phosphorylase] phosphatase (EC 3.1.3.17) b...    48   3e-04
BC043624_1(BC043624|pid:none) Xenopus laevis phosphorylase phosp...    47   4e-04
BX538353_65(BX538353|pid:none) Cryptosporidium parvum chromosome...    46   8e-04
CR382138_212(CR382138|pid:none) Debaryomyces hansenii strain CBS...    46   8e-04
(Q9UT08) RecName: Full=Protein phosphatase PP2A regulatory subun...    46   0.001
(Q09543) RecName: Full=Probable serine/threonine-protein phospha...    46   0.001
AE016816_483(AE016816|pid:none) Ashbya gossypii (= Eremothecium ...    45   0.001
FN392322_517(FN392322|pid:none) Pichia pastoris GS115 chromosome...    45   0.002
FN316918_1(FN316918|pid:none) Schistosoma japonicum isolate Anhu...    45   0.002
AY118384_1(AY118384|pid:none) Drosophila melanogaster RE28669 fu...    44   0.003
A43767(A43767) phosphoprotein phosphatase (EC 3.1.3.16) 65K regu...    44   0.003
BC075576_1(BC075576|pid:none) Xenopus tropicalis platelet-derive...    44   0.004
BC097118_1(BC097118|pid:none) Danio rerio zgc:92493, mRNA (cDNA ...    44   0.005
CU928168_103(CU928168|pid:none) Kluyveromyces thermotolerans str...    44   0.005
BC081658_1(BC081658|pid:none) Danio rerio zgc:92493, mRNA (cDNA ...    44   0.005
AJ876407_1(AJ876407|pid:none) Tribolium castaneum mRNA for phosp...    44   0.005
AK293869_1(AK293869|pid:none) Homo sapiens cDNA FLJ53307 complet...    43   0.006
AK293388_1(AK293388|pid:none) Homo sapiens cDNA FLJ54667 complet...    43   0.008
CR380952_33(CR380952|pid:none) Candida glabrata strain CBS138 ch...    43   0.008
AM920433_216(AM920433|pid:none) Penicillium chrysogenum Wisconsi...    43   0.008
AK299330_1(AK299330|pid:none) Homo sapiens cDNA FLJ50842 complet...    43   0.008
BC100979_1(BC100979|pid:none) Homo sapiens protein phosphatase 4...    43   0.008
AL354776_4(AL354776|pid:none) Human DNA sequence from clone RP11...    43   0.008
A34541(A34541;A36180;E38351) phosphoprotein phosphatase 2-alpha ...    42   0.011
AK290593_1(AK290593|pid:none) Homo sapiens cDNA FLJ77680 complet...    42   0.011
BC052678_1(BC052678|pid:none) Mus musculus protein phosphatase 2...    42   0.011
CP000496_861(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...    42   0.011
AM270402_10(AM270402|pid:none) Aspergillus niger contig An18c010...    42   0.011
AK088776_1(AK088776|pid:none) Mus musculus 2 days neonate thymus...    42   0.011
(P54612) RecName: Full=Serine/threonine-protein phosphatase 2A 6...    42   0.011
AY892682_1(AY892682|pid:none) Synthetic construct Homo sapiens c...    42   0.011
BC108103_1(BC108103|pid:none) Bos taurus protein phosphatase 2 (...    42   0.011
BT030492_1(BT030492|pid:none) Bos taurus protein phosphatase 2 (...    42   0.011
(P30153) RecName: Full=Serine/threonine-protein phosphatase 2A 6...    42   0.011
AB170499_1(AB170499|pid:none) Macaca fascicularis brain cDNA clo...    42   0.011
CR450340_1(CR450340|pid:none) Homo sapiens full open reading fra...    42   0.011
PDBN(1B3U)A MOL_ID: 1;MOL_ID: 1; MOLECULE: PROTEIN PHOSPHATASE P...    42   0.011
AK342263_1(AK342263|pid:none) Acyrthosiphon pisum ACYPI002758 mR...    42   0.014
AK091387_1(AK091387|pid:none) Homo sapiens cDNA FLJ34068 fis, cl...    42   0.014
CR860766_1(CR860766|pid:none) Pongo abelii mRNA; cDNA DKFZp459F2...    42   0.014
AK293174_1(AK293174|pid:none) Homo sapiens cDNA FLJ53296 complet...    42   0.014
AK293493_1(AK293493|pid:none) Homo sapiens cDNA FLJ56053 complet...    42   0.014
BC078080_1(BC078080|pid:none) Xenopus laevis protein phosphatase...    42   0.014
M31786_1(M31786|pid:none) Human medium tumor antigen-associated ...    42   0.014
S65953(S65953;I51631) [phosphorylase] phosphatase (EC 3.1.3.17) ...    42   0.014
AE017353_214(AE017353|pid:none) Cryptococcus neoformans var. neo...    42   0.019
CP000587_218(CP000587|pid:none) Ostreococcus lucimarinus CCE9901...    42   0.019
BT072580_1(BT072580|pid:none) Salmo salar clone ssal-rgf-531-139...    41   0.024
AB168293_1(AB168293|pid:none) Macaca fascicularis testis cDNA cl...    41   0.024
CR382132_33(CR382132|pid:none) Yarrowia lipolytica strain CLIB12...    41   0.032
EU561359_1(EU561359|pid:none) Carassius auratus protein phosphat...    41   0.032
AK161392_1(AK161392|pid:none) Mus musculus adult male testis cDN...    41   0.032
BX901896_5(BX901896|pid:none) Zebrafish DNA sequence from clone ...    41   0.032
CU928176_233(CU928176|pid:none) Zygosaccharomyces rouxii strain ...    40   0.042
(Q4QQT4) RecName: Full=Serine/threonine-protein phosphatase 2A 6...    40   0.042
AK292275_1(AK292275|pid:none) Homo sapiens cDNA FLJ76434 complet...    40   0.054
M65254_1(M65254|pid:none) Protein phosphatase 2A 65 kDa regulato...    40   0.054
FN357723_13(FN357723|pid:none) Schistosoma mansoni genome sequen...    40   0.054
BC027596_1(BC027596|pid:none) Homo sapiens protein phosphatase 2...    40   0.054
(Q7TNP2) RecName: Full=Serine/threonine-protein phosphatase 2A 6...    40   0.054
AY813472_1(AY813472|pid:none) Schistosoma japonicum SJCHGC08059 ...    40   0.071
AF196287_1(AF196287|pid:none) Medicago sativa subsp. x varia Ser...    39   0.093
(P36875) RecName: Full=Protein phosphatase PP2A regulatory subun...    39   0.093
AL354834_3(AL354834|pid:none) Human DNA sequence from clone RP11...    39   0.093
AL161574_44(AL161574|pid:none) Arabidopsis thaliana DNA chromoso...    39   0.093
AJ131045_1(AJ131045|pid:none) Cicer arietinum mRNA for protein p...    39   0.093
AJ243828_1(AJ243828|pid:none) Oryza sativa mRNA for protein phos...    39   0.12
T03684(T03684) phosphoprotein phosphatase (EC 3.1.3.16) 2A regul...    39   0.12
M98389_1(M98389|pid:none) Yeast protein phosphatase regulatory s...    39   0.12
BC046055_1(BC046055|pid:none) Danio rerio protein phosphatase 2 ...    39   0.12
BT085865_1(BT085865|pid:none) Zea mays full-length cDNA clone ZM...    39   0.12
S69215(S69215;S71203)phosphoprotein phosphatase (EC 3.1.3.16) 2A...    39   0.16
S51807(S51807;S76594)phosphoprotein phosphatase 2A 65K regulator...    39   0.16
AK222057_1(AK222057|pid:none) Arabidopsis thaliana mRNA for phos...    39   0.16
DQ115392_9(DQ115392|pid:none) Saccharomyces cerevisiae Vhs2p (VH...    38   0.21
AC011810_8(AC011810|pid:none) Arabidopsis thaliana chromosome I ...    38   0.21
S51809(S51809) phosphoprotein phosphatase 2A 65K regulatory chai...    38   0.21
Z46833_1(Z46833|pid:none) S.cerevisiae chromosome IX cosmid 8277.      38   0.21
(Q38951) RecName: Full=Serine/threonine-protein phosphatase 2A 6...    38   0.21
AF374376_33(AF374376|pid:none) Oikopleura dioica clone BAC clone...    38   0.21
AY812058_1(AY812058|pid:none) Schistosoma japonicum SJCHGC05657 ...    38   0.21
L05146_8(L05146|pid:none) Saccharomyces cerevisiae chromosome I ...    38   0.27
AK090488_1(AK090488|pid:none) Homo sapiens cDNA FLJ33169 fis, cl...    38   0.27
(P31383) RecName: Full=Protein phosphatase PP2A regulatory subun...    38   0.27
(Q06708) RecName: Full=Vacuole morphology and inheritance protei...    38   0.27
FJ667540_1(FJ667540|pid:none) Betula pendula protein phosphatase...    38   0.27
AY940682_1(AY940682|pid:none) Zea mays protein phosphatase 2A re...    37   0.35
BT055991_1(BT055991|pid:none) Zea mays full-length cDNA clone ZM...    37   0.35
AF196286_1(AF196286|pid:none) Medicago sativa subsp. x varia Ser...    37   0.35
CR382131_1404(CR382131|pid:none) Yarrowia lipolytica strain CLIB...    37   0.35
FM992690_648(FM992690|pid:none) Candida dubliniensis CD36 chromo...    37   0.46
AP003975_13(AP003975|pid:none) Oryza sativa Japonica Group genom...    37   0.46
FN357723_12(FN357723|pid:none) Schistosoma mansoni genome sequen...    37   0.46
CR382126_333(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    37   0.60
U61987_1(U61987|pid:none) Dictyostelium discoideum phosphoprotei...    36   1.0
CP001344_4536(CP001344|pid:none) Cyanothece sp. PCC 7425, comple...    36   1.0
FM992690_711(FM992690|pid:none) Candida dubliniensis CD36 chromo...    36   1.0
AX888167_1(AX888167|pid:none) Sequence 4030 from Patent EP1033401.     35   1.3
AL844505_217(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.4
AM910992_42(AM910992|pid:none) Plasmodium knowlesi strain H chro...    35   1.7
C34541(C34541)phosphoprotein phosphatase (EC 3.1.3.16) 2A-alpha ...    35   2.3
AK098212_1(AK098212|pid:none) Homo sapiens cDNA FLJ40893 fis, cl...    34   3.0
AX067150_1(AX067150|pid:none) Sequence 2 from Patent WO0100669. ...    34   3.0
CP001291_1110(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...    34   3.0
AE011190_68(AE011190|pid:none) Bacillus anthracis str. A2012 pla...    34   3.0
AE013599_78(AE013599|pid:none) Drosophila melanogaster chromosom...    34   3.9
AE016818_395(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    34   3.9
(Q9H583) RecName: Full=HEAT repeat-containing protein 1; AltName...    34   3.9
AK001221_1(AK001221|pid:none) Homo sapiens cDNA FLJ10359 fis, cl...    34   3.9
BT031331_1(BT031331|pid:none) Drosophila melanogaster LD46837 fu...    34   3.9
AK304129_1(AK304129|pid:none) Homo sapiens cDNA FLJ53502 complet...    34   3.9
CQ834524_1(CQ834524|pid:none) Sequence 395 from Patent WO2004058...    34   3.9
AK125663_1(AK125663|pid:none) Homo sapiens cDNA FLJ43675 fis, cl...    34   3.9
AL359921_10(AL359921|pid:none) Human DNA sequence from clone RP1...    34   3.9
BC150614_1(BC150614|pid:none) Homo sapiens HEAT repeat containin...    34   3.9
CQ834526_1(CQ834526|pid:none) Sequence 397 from Patent WO2004058...    34   3.9
BC011983_1(BC011983|pid:none) Homo sapiens HEAT repeat containin...    34   3.9
BC112762_1(BC112762|pid:none) Bos taurus transportin 2, mRNA (cD...    34   3.9
BC065205_1(BC065205|pid:none) Homo sapiens HEAT repeat containin...    34   3.9
AK132870_1(AK132870|pid:none) Mus musculus adult male testis cDN...    33   5.1
CR954206_386(CR954206|pid:none) Ostreococcus tauri strain OTTH05...    33   5.1
BT072187_1(BT072187|pid:none) Salmo salar clone ssal-rgf-515-256...    33   6.6
CU928168_594(CU928168|pid:none) Kluyveromyces thermotolerans str...    33   8.7
AY536043_6(AY536043|pid:none) Lyngbya majuscula CCAP 1446/4 puta...    33   8.7
AF542023_1(AF542023|pid:none) Griffithsia japonica DnaJ-like pro...    33   8.7
(P33892) RecName: Full=Translational activator GCN1;  &A48126(A4...    33   8.7
(Q54RS7) RecName: Full=ELMO domain-containing protein C;               33   8.7

>AM502236_67(AM502236|pid:none) Leishmania infantum chromosome 18.
          Length = 711

 Score = 89.7 bits (221), Expect(2) = 5e-20
 Identities = 44/132 (33%), Positives = 81/132 (61%), Gaps = 1/132 (0%)
 Frame = +3

Query: 231 RLYVIREFSDLIRIQ-FEQANEILITFIEEAVTDNEPVIRQALVEQIPSISECYIQFGRE 407
           RL ++RE +   +   + ++   ++  +     D EPV+RQALVEQ+  ++E ++Q G +
Sbjct: 46  RLVLVRELASTAQFAGYAESARSIVPLLTTFTQDAEPVVRQALVEQLYPLAEFFVQQGSD 105

Query: 408 DGYQKVLKNLLPIVAQLTTDRNPQVRMSAVESLQDMARIIRHEDIEVHLIPFIKSLVNDS 587
            GYQ +L   LP   +L  D+N +V + A+E++Q +A+++  ED++ HL+  + +L +D
Sbjct: 106 AGYQCLLNAFLPTAFELLVDKNVEVGVVALEAIQKLAQLVHKEDVQSHLLNVVMTLAHDE 165

Query: 588 TDEEHRVQAANL 623
             E++RV AA L
Sbjct: 166 RAEDYRVVAAQL 177

 Score = 30.8 bits (68), Expect(2) = 5e-20
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 107 LSDADNYDNIEESNGNEYVIDDSLPLIEKIKKYVKSELVLHTII 238
           L D    D  EE   NEY IDDSL  + ++  Y +S+  L  ++
Sbjct: 5   LLDDSTQDAEEEFIFNEYAIDDSLDPLNRLLMYYQSDFSLQRLV 48

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 772,621,827
Number of extensions: 12813056
Number of successful extensions: 31015
Number of sequences better than 10.0: 140
Number of HSP's gapped: 30976
Number of HSP's successfully gapped: 341
Length of query: 209
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 86
Effective length of database: 653,084,107
Effective search space: 56165233202
Effective search space used: 56165233202
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.63  gvh: 0.36  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for Contig-U13654-1 is cyt
VS (DIR, S) 0
VH (FL, L) 6
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0