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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U13649-1
Contig ID Contig-U13649-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13649-1 (Contig-U13649-1Q) /CSM_Contig/Contig-U13649-1Q.Seq.d
ATATCATCTCCTTATCAAATAATATTTTCGTTGATCTTCATCAATCAATT
CTTTCATTCAATAAAGATGAAATTGAAATTTTAATGAAAGAAATTACTCA
TATTAAATTTTCTCAAGCCACACCAGGTAAAACCATCTTTGATAAACGTA
CCACAACAATGGCTGATAATGGTGTCTTAACAATTACCACAACTTTTGAA
GATAGAAATGAAGGTTTTAAAACTTTTAAAGAGAAACTTCGTCAATTATT
TACTGCTCGTCTTTACAAAGTTCAAATTCGTGATACATTAGTACCAGCTC
TCAAAGAAATGATTGATCTTGCCGTTAAAATTCAATATAAAGCAAACTTT
TTAGATAATATTCCAGTTACACCATTTGCTGATTATTCAAGTAAAGTCAT
TTTCGATTGGCAAGTTGTTGATAAAGAATCATTAGAGAATCAAGTTAATT
TCTATAAAGCACTCACTGATAACTTGAAAACCACTGCTACATTTGCAAAG
GTATTGGATGGTGCAATTCGTGATATTTGTTCTTATGATGTTGGTAAAAA
TGAATTTGTCAATTGTACAACTTTTATTCTTCGTGATATTATCAGAGCTA
AAGAAGAGGTTGTTAAAAATACAACACCATCAACTTGGGAATTCTCAGCA
TGTTTCCATGGTCCAGCTTTAAGTACAAATAAATCAACCTTAACAACTCT
ATTCAAAGAAACTTTATCAGTTGCCTTCCCATGTGCTATTCAAGATACAT
TCCCATTAATTGATGAATTAGTTGAAGATTTAGAAAGTTCAACAGGTAAG
AAAGTACCAGTTGTAATTAATTATGATAGTTGGAGAAATGTTGAATCATT
TAGAGATGATACCACATCTTATAAAAGTATTAAAGATATCGTTGTTAATG
TACCAAGA
Gap no gap
Contig length 908
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3212903
End point 3213787
Strand (PLUS/MINUS) PLUS
Number of clones 5
Number of EST 5
Link to clone list U13649
List of clone(s) 

est1=VHO557F,1,586
est2=VHG509F,80,598
est3=VHG770F,217,863
est4=VHI243F,344,904
est5=VHQ185F,352,908
Translated Amino Acid sequence 
IISLSNNIFVDLHQSILSFNKDEIEILMKEITHIKFSQATPGKTIFDKRTTTMADNGVLT
ITTTFEDRNEGFKTFKEKLRQLFTARLYKVQIRDTLVPALKEMIDLAVKIQYKANFLDNI
PVTPFADYSSKVIFDWQVVDKESLENQVNFYKALTDNLKTTATFAKVLDGAIRDICSYDV
GKNEFVNCTTFILRDIIRAKEEVVKNTTPSTWEFSACFHGPALSTNKSTLTTLFKETLSV
AFPCAIQDTFPLIDELVEDLESSTGKKVPVVINYDSWRNVESFRDDTTSYKSIKDIVVNV
PR
Translated Amino Acid sequence (All Frames) 
Frame A:
isspyqiifslifinqffhsikmklkf**kkllilnflkphqvkpslinvpqqwlimvs*
qlpqllkiemkvlkllkrnfvnylllvftkfkfvih*yqlskk*lilplkfnikqtf*ii
fqlhhlliiqvksfsigklliknh*riklisikhslit*kpllhlqrywmvqfvifvlmm
lvkmnlsivqllffvilselkkrllkiqhhqlgnsqhvsmvql*vqinqp*qlyskklyq
lpshvlfkihsh*lmn*lki*kvqqvrkyql*limivgemlnhlemiphlikvlkisllm
yq


Frame B:
yhllik*yfr*sssinsfiq*r*n*nfnernysy*ifsshtr*nhl**tyhnng**wcln
nyhnf*r*k*rf*nf*retssiiycsslqssns*yistssqrnd*scr*nsi*sklfr*y
ssytic*lfk*shfrlasc**riiress*fl*sth**lenhcyickgigwcns*ylfl*c
w*k*icqlynfyss*yyqs*rrgc*kyntinlgilsmfpwssfkyk*inlnnsiqrnfis
clpmcysryipin**is*rfrkfnr*estscn*l**lekc*ii*r*yhil*ky*ryrc*c
tk


Frame C:
IISLSNNIFVDLHQSILSFNKDEIEILMKEITHIKFSQATPGKTIFDKRTTTMADNGVLT
ITTTFEDRNEGFKTFKEKLRQLFTARLYKVQIRDTLVPALKEMIDLAVKIQYKANFLDNI
PVTPFADYSSKVIFDWQVVDKESLENQVNFYKALTDNLKTTATFAKVLDGAIRDICSYDV
GKNEFVNCTTFILRDIIRAKEEVVKNTTPSTWEFSACFHGPALSTNKSTLTTLFKETLSV
AFPCAIQDTFPLIDELVEDLESSTGKKVPVVINYDSWRNVESFRDDTTSYKSIKDIVVNV
PR
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13649-1 (Contig-U13649-1Q)
/CSM_Contig/Contig-U13649-1Q.Seq.d
         (908 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13649-1 (Contig-U13649-1Q) /CSM_Contig/Conti...  1800  0.0
Contig-U12527-1 (Contig-U12527-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U11875-1 (Contig-U11875-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U03025-1 (Contig-U03025-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U13980-1 (Contig-U13980-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U12229-1 (Contig-U12229-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U11788-1 (Contig-U11788-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U11577-1 (Contig-U11577-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U03592-1 (Contig-U03592-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U02481-1 (Contig-U02481-1Q) /CSM_Contig/Conti...    38  0.016

>Contig-U13649-1 (Contig-U13649-1Q) /CSM_Contig/Contig-U13649-1Q.Seq.d
          Length = 908

 Score = 1800 bits (908), Expect = 0.0
 Identities = 908/908 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatcatctccttatcaaataatattttcgttgatcttcatcaatcaattctttcattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atatcatctccttatcaaataatattttcgttgatcttcatcaatcaattctttcattca 60

                                                                       
Query: 61  ataaagatgaaattgaaattttaatgaaagaaattactcatattaaattttctcaagcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ataaagatgaaattgaaattttaatgaaagaaattactcatattaaattttctcaagcca 120

                                                                       
Query: 121 caccaggtaaaaccatctttgataaacgtaccacaacaatggctgataatggtgtcttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caccaggtaaaaccatctttgataaacgtaccacaacaatggctgataatggtgtcttaa 180

                                                                       
Query: 181 caattaccacaacttttgaagatagaaatgaaggttttaaaacttttaaagagaaacttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caattaccacaacttttgaagatagaaatgaaggttttaaaacttttaaagagaaacttc 240

                                                                       
Query: 241 gtcaattatttactgctcgtctttacaaagttcaaattcgtgatacattagtaccagctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtcaattatttactgctcgtctttacaaagttcaaattcgtgatacattagtaccagctc 300

                                                                       
Query: 301 tcaaagaaatgattgatcttgccgttaaaattcaatataaagcaaactttttagataata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcaaagaaatgattgatcttgccgttaaaattcaatataaagcaaactttttagataata 360

                                                                       
Query: 361 ttccagttacaccatttgctgattattcaagtaaagtcattttcgattggcaagttgttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttccagttacaccatttgctgattattcaagtaaagtcattttcgattggcaagttgttg 420

                                                                       
Query: 421 ataaagaatcattagagaatcaagttaatttctataaagcactcactgataacttgaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ataaagaatcattagagaatcaagttaatttctataaagcactcactgataacttgaaaa 480

                                                                       
Query: 481 ccactgctacatttgcaaaggtattggatggtgcaattcgtgatatttgttcttatgatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccactgctacatttgcaaaggtattggatggtgcaattcgtgatatttgttcttatgatg 540

                                                                       
Query: 541 ttggtaaaaatgaatttgtcaattgtacaacttttattcttcgtgatattatcagagcta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttggtaaaaatgaatttgtcaattgtacaacttttattcttcgtgatattatcagagcta 600

                                                                       
Query: 601 aagaagaggttgttaaaaatacaacaccatcaacttgggaattctcagcatgtttccatg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aagaagaggttgttaaaaatacaacaccatcaacttgggaattctcagcatgtttccatg 660

                                                                       
Query: 661 gtccagctttaagtacaaataaatcaaccttaacaactctattcaaagaaactttatcag 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gtccagctttaagtacaaataaatcaaccttaacaactctattcaaagaaactttatcag 720

                                                                       
Query: 721 ttgccttcccatgtgctattcaagatacattcccattaattgatgaattagttgaagatt 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttgccttcccatgtgctattcaagatacattcccattaattgatgaattagttgaagatt 780

                                                                       
Query: 781 tagaaagttcaacaggtaagaaagtaccagttgtaattaattatgatagttggagaaatg 840
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tagaaagttcaacaggtaagaaagtaccagttgtaattaattatgatagttggagaaatg 840

                                                                       
Query: 841 ttgaatcatttagagatgataccacatcttataaaagtattaaagatatcgttgttaatg 900
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ttgaatcatttagagatgataccacatcttataaaagtattaaagatatcgttgttaatg 900

                   
Query: 901 taccaaga 908
           ||||||||
Sbjct: 901 taccaaga 908


>Contig-U12527-1 (Contig-U12527-1Q) /CSM_Contig/Contig-U12527-1Q.Seq.d
          Length = 2026

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 61   ataaagatgaaattgaaatt 80
            ||||||||||||||||||||
Sbjct: 1618 ataaagatgaaattgaaatt 1599


>Contig-U11875-1 (Contig-U11875-1Q) /CSM_Contig/Contig-U11875-1Q.Seq.d
          Length = 2137

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 757 taattgatgaattagttgaagatttaga 784
           ||||| ||||||||||| ||||||||||
Sbjct: 716 taattaatgaattagttaaagatttaga 743


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,814
Number of Sequences: 6905
Number of extensions: 13814
Number of successful extensions: 1454
Number of sequences better than 10.0: 183
length of query: 908
length of database: 5,674,871
effective HSP length: 16
effective length of query: 892
effective length of database: 5,564,391
effective search space: 4963436772
effective search space used: 4963436772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.13
Homology vs DNA 
Query= Contig-U13649-1 (Contig-U13649-1Q) /CSM_Contig/Contig-U13649-1Q.Seq.d
         (908 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...  1800   0.0    1
(BJ422049) Dictyostelium discoideum cDNA clone:ddv44l17, 5' ...  1283   0.0    1
(BJ426857) Dictyostelium discoideum cDNA clone:ddv60a15, 5' ...  1162   0.0    1
(BJ422871) Dictyostelium discoideum cDNA clone:ddv47e12, 5' ...  1112   0.0    1
(BJ427865) Dictyostelium discoideum cDNA clone:ddv63i21, 5' ...  1096   0.0    1
(BJ421831) Dictyostelium discoideum cDNA clone:ddv44a03, 5' ...  1021   0.0    1
(AC123245) Rattus norvegicus clone CH230-247L2, WORKING DRAF...    52   0.037  1
(AC112580) Rattus norvegicus clone CH230-268C16, *** SEQUENC...    52   0.037  1
(AC099132) Rattus norvegicus clone CH230-23A10, *** SEQUENCI...    52   0.037  1
(BZ172218) CH230-268C16.TV CHORI-230 Segment 2 Rattus norveg...    52   0.037  1
(AC179306) Strongylocentrotus purpuratus clone R3-53G23, WOR...    44   0.10   6
(AC068760) Homo sapiens 3 BAC RP11-420J11 (Roswell Park Canc...    38   0.34   5
(CN449903) GUO_cDNA_21_14 Flower bud cDNA library from Lycor...    48   0.58   1
(CN449902) GUO_cDNA_21_71 Flower bud cDNA library from Lycor...    48   0.58   1
(CU862013) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   1.3    6
(AL591595) Human DNA sequence from clone RP13-547K6 on chrom...    38   2.1    2
(CU927990) S.lycopersicum DNA sequence from clone LE_HBa-246...    40   2.2    5
(AC126495) Rattus norvegicus clone CH230-395C18, *** SEQUENC...    46   2.3    1
(AC106984) Rattus norvegicus clone CH230-233I23, *** SEQUENC...    46   2.3    1
(AC184287) Strongylocentrotus purpuratus clone R3-59E19, WOR...    46   2.3    1
(AC180748) Strongylocentrotus purpuratus clone R3-3083E18, W...    46   2.3    1
(DU962874) 233752 Tomato MboI BAC Library Solanum lycopersic...    46   2.3    1
(DH535269) Rattus norvegicus DNA, BAC clone: RNB1-037K06, 5'...    46   2.3    1
(CZ254396) LQCX170TV Painted Turtle BAC Library Chrysemys pi...    46   2.3    1
(AP010564) Lotus japonicus genomic DNA, chromosome 1, clone:...    36   2.4    4
(AP009247) Candidatus Vesicomyosocius okutanii HA DNA, compl...    38   2.8    15
(CU928678) S.lycopersicum DNA sequence *** SEQUENCING IN PRO...    40   3.3    5
(CU838751) A BAC library has been constructed from PN40024 g...    36   3.6    2
(CU179680) Mycoplasma agalactiae PG2 chromosome, complete se...    38   3.8    12
(AC183427) Populus trichocarpa clone Pop1-48H6, complete seq...    42   4.0    4
(AC150935) Bos taurus clone CH240-38M19, WORKING DRAFT SEQUE...    34   4.1    2
(AC150938) Bos taurus clone CH240-38N12, WORKING DRAFT SEQUE...    34   4.1    2
(AC115472) Rattus norvegicus clone CH230-34H4, *** SEQUENCIN...    32   4.2    2
(AC099226) Rattus norvegicus clone CH230-40H20, *** SEQUENCI...    32   4.3    2
(AC164259) Bos taurus clone CH240-138O13, *** SEQUENCING IN ...    34   4.3    2
(AC113927) Rattus norvegicus clone CH230-38J21, WORKING DRAF...    32   4.3    2
(AC109386) Rattus norvegicus clone CH230-166N9, *** SEQUENCI...    32   4.3    2
(AC204000) Zea mays chromosome 8 clone CH201-180C16; ZMMBBc0...    44   4.4    2
(CT509626) A BAC library has been constructed from cultivar ...    36   4.5    2
(CU570890) Zebrafish DNA sequence from clone CH73-348L8 in l...    32   4.6    2
(AC151214) Bos taurus clone CH240-316L22, WORKING DRAFT SEQU...    38   5.3    3
(EC823356) SME00001888 esmbsro2 Sawyeria marylandensis cDNA,...    40   5.5    2
(DY677877) TT1AU16TH Tetrahymena thermophila EST library str...    42   5.5    2
(AC171136) Helobdella robusta clone CH306-1A7, complete sequ...    42   5.6    5
(CX589829) TTE00032184 Amplicon Express - Conjugative Form T...    42   5.8    2
(EI690294) SB_BBd03-B09.R SB_BBd Sorghum bicolor genomic 3',...    32   5.9    2
(EJ559245) 1092959534652 Global-Ocean-Sampling_GS-29-01-01-1...    38   6.0    2
(FF563678) TT1B653TH Tetrahymena thermophila SB210 cDNA libr...    42   6.0    2
(FF563272) TT1B382TH Tetrahymena thermophila SB210 cDNA libr...    42   6.8    2
(AC191232) Pan troglodytes BAC clone CH251-545M20 from chrom...    42   6.8    3
(EK112880) 1092963138931 Global-Ocean-Sampling_GS-31-01-01-1...    42   7.8    2
(AC151225) Bos taurus clone CH240-70G21, WORKING DRAFT SEQUE...    38   7.9    4
(CU459183) Zebrafish DNA sequence from clone CH1073-440B2 in...    44   9.1    1
(BX571828) Zebrafish DNA sequence from clone DKEY-281I15 in ...    44   9.1    1
(CR382136) Debaryomyces hansenii chromosome D of strain CBS7...    44   9.1    1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    44   9.1    1
(AC007744) Homo sapiens BAC clone RP11-482H16 from 2, comple...    44   9.1    1
(AC094174) Rattus norvegicus clone CH230-2M9, *** SEQUENCING...    44   9.1    1
(CR936381) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   9.1    1
(AC187161) Zea mays chromosome 8 clone CH201-212M24; ZMMBBc0...    44   9.1    1
(AC177025) Strongylocentrotus purpuratus clone R3-1038J21, W...    44   9.1    1
(AC175542) Bos taurus clone CH240-384A17, WORKING DRAFT SEQU...    44   9.1    1
(AC173249) Bos taurus clone CH240-386O21, WORKING DRAFT SEQU...    44   9.1    1
(FI084142) CHO_OF7678xn20r1.ab1 CHO_OF7 Nicotiana tabacum ge...    44   9.1    1
(EK087615) 1092961169210 Global-Ocean-Sampling_GS-31-01-01-1...    44   9.1    1
(EK015085) 1092955226957 Global-Ocean-Sampling_GS-31-01-01-1...    44   9.1    1
(AM684587) Entamoeba terrapinae GSS, clone terra002f03.q1k.        44   9.1    1
(AM678372) Entamoeba terrapinae GSS, clone terra163a04.p1k.        44   9.1    1
(AM676362) Entamoeba terrapinae GSS, clone terra118e09.q1k.        44   9.1    1
(EJ112442) 1092343160106 Global-Ocean-Sampling_GS-27-01-01-1...    44   9.1    1
(ES424608) pm_OSU_shoot_MH_2003-04_047C03 Douglas-fir maximu...    44   9.1    1
(CD079679) MA3-9999U-M277-D06-U.B MA3-0001 Schistosoma manso...    44   9.1    1
(CD073939) MA3-0001U-M277-D06-U.G MA3-0001 Schistosoma manso...    44   9.1    1
(BW286964) Ciona intestinalis cDNA, clone:cigd031l01, 5' end...    44   9.1    1
(BW286295) Ciona intestinalis cDNA, clone:cigd002j07, 5' end...    44   9.1    1
(BW284366) Ciona intestinalis cDNA, clone:cigd024l09, 5' end...    44   9.1    1
(BW236652) Ciona intestinalis cDNA, clone:citb054f18, 5' end...    44   9.1    1
(BJ416417) Dictyostelium discoideum cDNA clone:ddv26j09, 5' ...    44   9.1    1
(FK225100) XABT227160.b1 Gateway compatible cien cDNA librar...    44   9.1    1
(FK224979) XABT227048.b1 Gateway compatible cien cDNA librar...    44   9.1    1
(FK222654) XABT225164.b1 Gateway compatible cien cDNA librar...    44   9.1    1
(FK214489) XABT219923.b1 Gateway compatible cien cDNA librar...    44   9.1    1
(FK202701) XABT212609.b1 Gateway compatible cien cDNA librar...    44   9.1    1
(FK198885) XABT210235.b1 Gateway compatible cien cDNA librar...    44   9.1    1
(FK186381) XABT202370.b1 Gateway compatible cien cDNA librar...    44   9.1    1
(FK184676) XABT201353.b1 Gateway compatible cien cDNA librar...    44   9.1    1
(FK179595) XABT198237.b1 Gateway compatible cien cDNA librar...    44   9.1    1
(FK172359) XABT193839.b1 Gateway compatible cien cDNA librar...    44   9.1    1
(FK171195) XABT193107.b1 Gateway compatible cien cDNA librar...    44   9.1    1
(FK168179) XABT191305.b1 Gateway compatible cien cDNA librar...    44   9.1    1
(FK165436) XABT189623.b1 Gateway compatible cien cDNA librar...    44   9.1    1
(FK156865) XABT184358.b1 Gateway compatible cien cDNA librar...    44   9.1    1
(FK152160) XABT181560.b1 Gateway compatible cien cDNA librar...    44   9.1    1
(FK146056) XABT177561.b1 Gateway compatible cien cDNA librar...    44   9.1    1
(FK135026) XABT170886.b1 Gateway compatible cien cDNA librar...    44   9.1    1
(FK113566) XABT157898.b1 Gateway compatible cien cDNA librar...    44   9.1    1
(FK100524) XABT148742.b1 Gateway compatible cien cDNA librar...    44   9.1    1
(FK086201) XABT139963.b1 Gateway compatible cien cDNA librar...    44   9.1    1
(FK085500) XABT139532.b1 Gateway compatible cien cDNA librar...    44   9.1    1
(FK077846) XABT134660.b1 Gateway compatible cien cDNA librar...    44   9.1    1

>(AC116984) Dictyostelium discoideum chromosome 2 map 2567470-3108875
              strain AX4, complete sequence.
          Length = 541399

 Score = 1800 bits (908), Expect = 0.0
 Identities = 908/908 (100%)
 Strand = Plus / Minus


Query: 1      atatcatctccttatcaaataatattttcgttgatcttcatcaatcaattctttcattca 60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533468 atatcatctccttatcaaataatattttcgttgatcttcatcaatcaattctttcattca 533409


Query: 61     ataaagatgaaattgaaattttaatgaaagaaattactcatattaaattttctcaagcca 120
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533408 ataaagatgaaattgaaattttaatgaaagaaattactcatattaaattttctcaagcca 533349


Query: 121    caccaggtaaaaccatctttgataaacgtaccacaacaatggctgataatggtgtcttaa 180
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533348 caccaggtaaaaccatctttgataaacgtaccacaacaatggctgataatggtgtcttaa 533289


Query: 181    caattaccacaacttttgaagatagaaatgaaggttttaaaacttttaaagagaaacttc 240
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533288 caattaccacaacttttgaagatagaaatgaaggttttaaaacttttaaagagaaacttc 533229


Query: 241    gtcaattatttactgctcgtctttacaaagttcaaattcgtgatacattagtaccagctc 300
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533228 gtcaattatttactgctcgtctttacaaagttcaaattcgtgatacattagtaccagctc 533169


Query: 301    tcaaagaaatgattgatcttgccgttaaaattcaatataaagcaaactttttagataata 360
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533168 tcaaagaaatgattgatcttgccgttaaaattcaatataaagcaaactttttagataata 533109


Query: 361    ttccagttacaccatttgctgattattcaagtaaagtcattttcgattggcaagttgttg 420
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533108 ttccagttacaccatttgctgattattcaagtaaagtcattttcgattggcaagttgttg 533049


Query: 421    ataaagaatcattagagaatcaagttaatttctataaagcactcactgataacttgaaaa 480
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533048 ataaagaatcattagagaatcaagttaatttctataaagcactcactgataacttgaaaa 532989


Query: 481    ccactgctacatttgcaaaggtattggatggtgcaattcgtgatatttgttcttatgatg 540
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532988 ccactgctacatttgcaaaggtattggatggtgcaattcgtgatatttgttcttatgatg 532929


Query: 541    ttggtaaaaatgaatttgtcaattgtacaacttttattcttcgtgatattatcagagcta 600
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532928 ttggtaaaaatgaatttgtcaattgtacaacttttattcttcgtgatattatcagagcta 532869


Query: 601    aagaagaggttgttaaaaatacaacaccatcaacttgggaattctcagcatgtttccatg 660
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532868 aagaagaggttgttaaaaatacaacaccatcaacttgggaattctcagcatgtttccatg 532809


Query: 661    gtccagctttaagtacaaataaatcaaccttaacaactctattcaaagaaactttatcag 720
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532808 gtccagctttaagtacaaataaatcaaccttaacaactctattcaaagaaactttatcag 532749


Query: 721    ttgccttcccatgtgctattcaagatacattcccattaattgatgaattagttgaagatt 780
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532748 ttgccttcccatgtgctattcaagatacattcccattaattgatgaattagttgaagatt 532689


Query: 781    tagaaagttcaacaggtaagaaagtaccagttgtaattaattatgatagttggagaaatg 840
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532688 tagaaagttcaacaggtaagaaagtaccagttgtaattaattatgatagttggagaaatg 532629


Query: 841    ttgaatcatttagagatgataccacatcttataaaagtattaaagatatcgttgttaatg 900
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532628 ttgaatcatttagagatgataccacatcttataaaagtattaaagatatcgttgttaatg 532569


Query: 901    taccaaga 908
              ||||||||
Sbjct: 532568 taccaaga 532561

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,153,865,307
Number of extensions: 70241652
Number of successful extensions: 5681777
Number of sequences better than 10.0: 120
Length of query: 908
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 884
Effective length of database: 97,308,875,965
Effective search space: 86021046353060
Effective search space used: 86021046353060
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 7
Homology vs Protein 
Query= Contig-U13649-1 (Contig-U13649-1Q) /CSM_Contig/Contig-U13649-1Q.Seq.d
         (908 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF303741_468(AF303741|pid:none) Chilo iridescent virus complete ...    43   0.017
BX950851_2318(BX950851|pid:none) Erwinia carotovora subsp. atros...    37   0.70
CP000771_1565(CP000771|pid:none) Fervidobacterium nodosum Rt17-B...    36   1.6
BC077183_1(BC077183|pid:none) Xenopus laevis sorting nexin 9, mR...    35   4.6
CP000607_1042(CP000607|pid:none) Chlorobium phaeovibrioides DSM ...    35   4.6
CP001083_1391(CP001083|pid:none) Clostridium botulinum Ba4 str. ...    34   5.9
CP000728_1348(CP000728|pid:none) Clostridium botulinum F str. La...    34   5.9
CP000939_1382(CP000939|pid:none) Clostridium botulinum B1 str. O...    34   5.9
CP001078_87(CP001078|pid:none) Clostridium botulinum E3 str. Ala...    34   7.8
CR940348_365(CR940348|pid:none) Theileria annulata strain Ankara...    34   7.8
CP000962_1410(CP000962|pid:none) Clostridium botulinum A3 str. L...    34   7.8
AE014296_2334(AE014296|pid:none) Drosophila melanogaster chromos...    34   7.8

>AF303741_468(AF303741|pid:none) Chilo iridescent virus complete
           genome.
          Length = 503

 Score = 42.7 bits (99), Expect = 0.017
 Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 14/171 (8%)
 Frame = +3

Query: 9   SLSNNIFVDLHQSILSF----NKDEIEILMKEITHIKFSQATPGKTIFDKR----TTTMA 164
           +LS NI  D    +LS+    NK+E +I++  ++   F   T  KTI++ +    T+T+
Sbjct: 224 NLSVNIRADASDMLLSYGSSENKEEAKIILDSLS---FDNHTI-KTIYNNKENVHTSTIN 279

Query: 165 DNGVLTITTTFEDRNEGFKTFKEKLRQLFTARLYKVQIRD---TLVPALKEMIDLAVKIQ 335
              + TIT   ED N   K F+ +   + T  + +  I        P +K  ID A+K
Sbjct: 280 KTAINTITIIIEDVN---KMFQREDIWILTENILQNLIEKYPPNFKPQIKSQIDNAIKAY 336

Query: 336 YKANFLDNIPVTPFADYSSKVIFD--WQVVDKES-LENQVNFYKALTDNLK 479
            +  +LDN   T + +++ K I +  W  ++  + + N+V   K L + ++
Sbjct: 337 NRIMYLDNALYTAY-NFNLKNIMNYVWTFINNSNKVSNKVELEKRLIEEMR 386

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,322,281,368
Number of extensions: 25027868
Number of successful extensions: 70211
Number of sequences better than 10.0: 12
Number of HSP's gapped: 70042
Number of HSP's successfully gapped: 12
Length of query: 302
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 174
Effective length of database: 636,901,312
Effective search space: 110820828288
Effective search space used: 110820828288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.36  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U13649-1 is cyt
VS (DIR, S) 0
VH (FL, L) 5
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0