Contig-U13647-1
Contig ID Contig-U13647-1
Contig update 2002.12.18
Contig sequence
>Contig-U13647-1 (Contig-U13647-1Q) /CSM_Contig/Contig-U13647-1Q.Seq.d
TTTTTTAATTAATAATTTCAATTCATTTTCTGCTTATCCTTGTGATATGA
ATAATGATGGAATTGGTGATATAATGATAAATAAAGATCAGTTAGCAATC
TATATTATTTATGGTAGTAGAGGTCCTTTTACCTCACCATATATCCCAGT
TTATGATGGTGTCAAAGGTACCCGTTTCAGTTTTTTAGGTTGCTCAATAA
ATTCTAATGATCTTCCAAATGCATTTGGAGATTTTAATAATGATGGACTA
AATGATTTTGGTATTCAAACAAAACTTCAGTCGGGTGACTTTATAGCTTT
TTTGGTTTGGGGTAAAACAGAATATCCACCAACAACAACATTAAGTATAA
ATCTAAATCCATTGGATGGTTTGGTTATAACAATTGTTGGCAACCCCGAT
CCTTGGGCTTTATCTCCTAGATTAGGGGATATAAATAATGATGGATTTGC
AGATTTTTTACTCAGTGGTAACATTTACCTCCCATTCACCATTTTGTATG
GTAATAATAAAAATTATGCTTCAAATCCAATTTATTTAAAAGATCAAGTT
GGTGATTGTTCAATAATGTCAATTAATGGCCCTGCGTTGGCTATTGATAT
TGGTGATTATAACTCTGATGGTATTCATGATATTACAGCATCTACTAAAA
CAACANNNNNNNNN

Gap no gap
Contig length 664
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5788790
End point 5789444
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U13647
List of clone(s)

est1=VHG440F,1,655
Translated Amino Acid sequence
FLINNFNSFSAYPCDMNNDGIGDIMINKDQLAIYIIYGSRGPFTSPYIPVYDGVKGTRFS
FLGCSINSNDLPNAFGDFNNDGLNDFGIQTKLQSGDFIAFLVWGKTEYPPTTTLSINLNP
LDGLVITIVGNPDPWALSPRLGDINNDGFADFLLSGNIYLPFTILYGNNKNYASNPIYLK
DQVGDCSIMSINGPALAIDIGDYNSDGIHDITASTKTTXXX


Translated Amino Acid sequence (All Frames)
Frame A:
ffn**fqfifclsl*ye**wnw*yndk*rsvsnlyylw**rsfyltiypsl*wcqrypfq
ffrllnkf**sskciwrf***wtk*fwysnktsvg*lysffglg*nristnnnikyksks
igwfgynncwqprslgfis*irgyk**wicrfftqw*hlppihhfvw***klcfksnlfk
rssw*lfnnvn*wpcvgy*yw*l*l*wys*yysiy*nnxxx


Frame B:
FLINNFNSFSAYPCDMNNDGIGDIMINKDQLAIYIIYGSRGPFTSPYIPVYDGVKGTRFS
FLGCSINSNDLPNAFGDFNNDGLNDFGIQTKLQSGDFIAFLVWGKTEYPPTTTLSINLNP
LDGLVITIVGNPDPWALSPRLGDINNDGFADFLLSGNIYLPFTILYGNNKNYASNPIYLK
DQVGDCSIMSINGPALAIDIGDYNSDGIHDITASTKTTXXX


Frame C:
f*liisihfllilvi*immelvi***ikis*qsilfmvvevllphhisqfmmvskvpvsv
f*vaq*ilmifqmhleilimmd*milvfkqnfsrvtl*lfwfgvkqnihqqqh*v*i*ih
wmvwl*qllatpilglylld*gi*immdlqifysvvtftshspfcmviikimlqiqfi*k
iklvivq*cqlmalrwllilviitlmvfmilqhllkqxxx


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U13647-1 (Contig-U13647-1Q)
/CSM_Contig/Contig-U13647-1Q.Seq.d
(664 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U13647-1 (Contig-U13647-1Q) /CSM_Contig/Conti... 1298 0.0
Contig-U11544-1 (Contig-U11544-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U11181-1 (Contig-U11181-1Q) /CSM_Contig/Conti... 38 0.012
Contig-U14127-1 (Contig-U14127-1Q) /CSM_Contig/Conti... 36 0.046
Contig-U09887-1 (Contig-U09887-1Q) /CSM_Contig/Conti... 36 0.046
Contig-U05232-1 (Contig-U05232-1Q) /CSM_Contig/Conti... 36 0.046
Contig-U02608-1 (Contig-U02608-1Q) /CSM_Contig/Conti... 36 0.046
Contig-U13259-1 (Contig-U13259-1Q) /CSM_Contig/Conti... 34 0.18
Contig-U12787-1 (Contig-U12787-1Q) /CSM_Contig/Conti... 34 0.18
Contig-U12332-1 (Contig-U12332-1Q) /CSM_Contig/Conti... 34 0.18

>Contig-U13647-1 (Contig-U13647-1Q) /CSM_Contig/Contig-U13647-1Q.Seq.d
Length = 664

Score = 1298 bits (655), Expect = 0.0
Identities = 655/655 (100%)
Strand = Plus / Plus


Query: 1 ttttttaattaataatttcaattcattttctgcttatccttgtgatatgaataatgatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttttttaattaataatttcaattcattttctgcttatccttgtgatatgaataatgatgg 60


Query: 61 aattggtgatataatgataaataaagatcagttagcaatctatattatttatggtagtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aattggtgatataatgataaataaagatcagttagcaatctatattatttatggtagtag 120


Query: 121 aggtccttttacctcaccatatatcccagtttatgatggtgtcaaaggtacccgtttcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aggtccttttacctcaccatatatcccagtttatgatggtgtcaaaggtacccgtttcag 180


Query: 181 ttttttaggttgctcaataaattctaatgatcttccaaatgcatttggagattttaataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttttttaggttgctcaataaattctaatgatcttccaaatgcatttggagattttaataa 240


Query: 241 tgatggactaaatgattttggtattcaaacaaaacttcagtcgggtgactttatagcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgatggactaaatgattttggtattcaaacaaaacttcagtcgggtgactttatagcttt 300


Query: 301 tttggtttggggtaaaacagaatatccaccaacaacaacattaagtataaatctaaatcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttggtttggggtaaaacagaatatccaccaacaacaacattaagtataaatctaaatcc 360


Query: 361 attggatggtttggttataacaattgttggcaaccccgatccttgggctttatctcctag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attggatggtttggttataacaattgttggcaaccccgatccttgggctttatctcctag 420


Query: 421 attaggggatataaataatgatggatttgcagattttttactcagtggtaacatttacct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attaggggatataaataatgatggatttgcagattttttactcagtggtaacatttacct 480


Query: 481 cccattcaccattttgtatggtaataataaaaattatgcttcaaatccaatttatttaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cccattcaccattttgtatggtaataataaaaattatgcttcaaatccaatttatttaaa 540


Query: 541 agatcaagttggtgattgttcaataatgtcaattaatggccctgcgttggctattgatat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agatcaagttggtgattgttcaataatgtcaattaatggccctgcgttggctattgatat 600


Query: 601 tggtgattataactctgatggtattcatgatattacagcatctactaaaacaaca 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tggtgattataactctgatggtattcatgatattacagcatctactaaaacaaca 655


Score = 32.2 bits (16), Expect = 0.73
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 214 tccaaatgcatttgga 229
||||||||||||||||
Sbjct: 229 tccaaatgcatttgga 214


>Contig-U11544-1 (Contig-U11544-1Q) /CSM_Contig/Contig-U11544-1Q.Seq.d
Length = 1669

Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 430 tataaataatgatggatttg 449
||||||||||||||||||||
Sbjct: 364 tataaataatgatggatttg 383


>Contig-U11181-1 (Contig-U11181-1Q) /CSM_Contig/Contig-U11181-1Q.Seq.d
Length = 2109

Score = 38.2 bits (19), Expect = 0.012
Identities = 22/23 (95%)
Strand = Plus / Minus


Query: 429 atataaataatgatggatttgca 451
||||||||| |||||||||||||
Sbjct: 700 atataaatattgatggatttgca 678


Score = 30.2 bits (15), Expect = 2.9
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 50 aataatgatggaatt 64
|||||||||||||||
Sbjct: 1741 aataatgatggaatt 1727


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,066
Number of Sequences: 6905
Number of extensions: 19066
Number of successful extensions: 1880
Number of sequences better than 10.0: 222
length of query: 664
length of database: 5,674,871
effective HSP length: 16
effective length of query: 648
effective length of database: 5,564,391
effective search space: 3605725368
effective search space used: 3605725368
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.13
Homology vs DNA
Query= Contig-U13647-1 (Contig-U13647-1Q) /CSM_Contig/Contig-U13647-1Q.Seq.d
(664 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ421675) Dictyostelium discoideum cDNA clone:ddv43p10, 5' ... 1298 0.0 1
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 377 0.0 4
(EJ895640) 1093018465687 Global-Ocean-Sampling_GS-30-02-01-1... 50 3e-04 2
(EJ782546) 1093017288510 Global-Ocean-Sampling_GS-30-02-01-1... 44 0.020 2
(EJ864804) 1093018268609 Global-Ocean-Sampling_GS-30-02-01-1... 44 0.021 2
(AC201150) Strongylocentrotus purpuratus clone R3-14E24, WOR... 36 0.24 2
(AC174882) Strongylocentrotus purpuratus clone R3-1113G17, W... 36 0.24 2
(EF635417) Prunus japonica S1-RNase (S) gene, S1 allele, par... 42 0.32 2
(EJ999522) 1093025016568 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.42 1
(EJ961305) 1093022004592 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.42 1
(EJ203795) 1092344319769 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.42 1
(DW343362) PP_LEc0014N23f Peach shoot Prunus persica cDNA cl... 48 0.42 1
(CN750730) ApDT-XXIX-F11 ApDT Acyrthosiphon pisum cDNA clone... 48 0.42 1
(BJ339599) Dictyostelium discoideum cDNA clone:dda65l23, 5' ... 44 0.72 2
(AC178481) Strongylocentrotus purpuratus clone R3-113F05, WO... 46 0.73 6
(AL390117) Human DNA sequence from clone RP11-116P22 on chro... 44 0.77 3
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 0.84 12
(AY630340) Philaenus spumarius mitochondrion, complete genome. 34 0.88 4
(AC189654) Brassica rapa subsp. pekinensis clone KBrS012H18,... 34 0.91 2
(EK135828) 1095403480298 Global-Ocean-Sampling_GS-31-01-01-1... 42 0.92 2
(EK168920) 1095458065858 Global-Ocean-Sampling_GS-31-01-01-1... 42 1.1 2
(ER566732) 1093015773157 Global-Ocean-Sampling_GS-36-01-01-2... 36 1.1 2
(EJ804852) 1093017451913 Global-Ocean-Sampling_GS-30-02-01-1... 36 1.2 2
(EJ884811) 1093018412581 Global-Ocean-Sampling_GS-30-02-01-1... 36 1.2 2
(AC121789) Mus musculus BAC clone RP23-398C14 from 1, comple... 46 1.7 1
(AC180718) Strongylocentrotus purpuratus clone R3-3085L24, W... 46 1.7 1
(AC180460) Strongylocentrotus purpuratus clone R3-3102D04, W... 46 1.7 1
(EK342952) 1095467073448 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.7 1
(DY229674) ID0AAK7YL13CM1 ApHL3SD Acyrthosiphon pisum cDNA c... 46 1.7 1
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 46 1.7 1
(AC154488) Mus musculus BAC clone RP24-119K2 from chromosome... 38 2.1 4
(AC132737) Rattus norvegicus clone CH230-18D9, WORKING DRAFT... 40 2.4 2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 32 2.4 10
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 34 2.5 7
(CP000439) Francisella tularensis subsp. novicida U112, comp... 32 2.8 2
(EK031701) 1092955413921 Global-Ocean-Sampling_GS-31-01-01-1... 38 3.2 2
(DX507463) 803_5_14286491_16654_44238_034 Limanthese alba me... 38 3.2 2
(EK458159) 1095468708853 Global-Ocean-Sampling_GS-32-01-01-1... 38 3.7 2
(EJ415762) 1093012180433 Global-Ocean-Sampling_GS-28-01-01-1... 40 3.7 2
(ET846979) CHO_OF390xk08r1.ab1 CHO_OF Nicotiana tabacum geno... 38 3.7 2
(EK464484) 1095469413240 Global-Ocean-Sampling_GS-32-01-01-1... 34 3.7 2
(ER513150) 1093015470650 Global-Ocean-Sampling_GS-35-01-01-1... 36 3.7 2
(EK466139) 1095469423608 Global-Ocean-Sampling_GS-32-01-01-1... 34 3.9 2
(AC132833) Mus musculus chromosome 15, clone RP24-498G7, com... 38 4.2 5
(EJ059118) 1095456053165 Global-Ocean-Sampling_GS-26-01-01-1... 32 4.3 2
(EJ265450) 1095351007982 Global-Ocean-Sampling_GS-27-01-01-1... 34 4.8 3
(EA683316) Sequence 62195 from patent US 7365185. 44 5.3 2
(AC095200) Rattus norvegicus clone CH230-9A13, *** SEQUENCIN... 38 5.9 3
(AL592404) Mouse DNA sequence from clone RP23-425D20 on chro... 44 5.9 2
(CR352325) Mouse DNA sequence from clone RP23-333J5 on chrom... 44 6.1 2
(BX323818) Zebrafish DNA sequence from clone DKEY-48H7 in li... 44 6.6 1
(AC116383) Mus musculus chromosome 5, clone RP23-15P21, comp... 44 6.6 1
(AC099975) Mus musculus chromosome 5, clone RP23-23A2, compl... 44 6.6 1
(AP008217) Oryza sativa (japonica cultivar-group) genomic DN... 44 6.6 1
(AP006492) Cyanidioschyzon merolae DNA, chromosome 10, compl... 44 6.6 1
(AM440294) Vitis vinifera contig VV78X042878.4, whole genome... 44 6.6 1
(AC149635) Genomic sequence for broccoli [Brassica oleracea ... 44 6.6 1
(AC135864) Oryza sativa Japonica Group chromosome 11 clone O... 44 6.6 1
(AC135242) Oryza sativa Japonica Group chromosome 11 clone O... 44 6.6 1
(AC104269) Caenorhabditis briggsae cosmid CB047C11, complete... 44 6.6 1
(AC025271) Homo sapiens chromosome 15 clone CTD-2515H24 map ... 44 6.6 1
(AC016525) Homo sapiens chromosome 15 clone RP11-358M11 map ... 44 6.6 1
(AC152460) Atelerix albiventris clone LB4-35D1, WORKING DRAF... 44 6.6 1
(AC112354) Rattus norvegicus clone CH230-291B17, *** SEQUENC... 44 6.6 1
(AC110831) Rattus norvegicus clone CH230-242B20, *** SEQUENC... 44 6.6 1
(AC046203) Homo sapiens chromosome 15 clone RP11-484A10 map ... 44 6.6 1
(AC027610) Homo sapiens chromosome 1 clone RP11-103J13, WORK... 44 6.6 1
(CU407153) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.6 1
(AL138929) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 6.6 1
(AC232055) Solanum tuberosum strain Diploid genotype RH89-03... 44 6.6 1
(AC180362) Strongylocentrotus purpuratus clone R3-3115B14, W... 44 6.6 1
(AC180048) Strongylocentrotus purpuratus clone R3-25E18, WOR... 44 6.6 1
(AC177073) Strongylocentrotus purpuratus clone R3-4004K17, W... 44 6.6 1
(AC176585) Strongylocentrotus purpuratus clone R3-3077I21, W... 44 6.6 1
(AK160603) Mus musculus 10 days embryo whole body cDNA, RIKE... 44 6.6 1
(FH138192) CHO_OF3072xh18f2.ab1 CHO_OF3 Nicotiana tabacum ge... 44 6.6 1
(ER630519) 1093018422807 Global-Ocean-Sampling_GS-36-01-01-2... 44 6.6 1
(EK290205) 1095462327888 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.6 1
(EK154887) 1095456070466 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.6 1
(EJ711295) 1092956076680 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.6 1
(EJ647506) 1092351918726 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.6 1
(EJ589844) 1092961042709 Global-Ocean-Sampling_GS-29-01-01-1... 44 6.6 1
(EJ578112) 1092960127473 Global-Ocean-Sampling_GS-29-01-01-1... 44 6.6 1
(EJ545621) 1092956084737 Global-Ocean-Sampling_GS-29-01-01-1... 44 6.6 1
(EJ466972) 1095403357521 Global-Ocean-Sampling_GS-28-01-01-1... 44 6.6 1
(EJ350087) 1092963577592 Global-Ocean-Sampling_GS-28-01-01-1... 44 6.6 1
(EJ234590) 1092405677873 Global-Ocean-Sampling_GS-27-01-01-1... 44 6.6 1
(EJ201685) 1092344307103 Global-Ocean-Sampling_GS-27-01-01-1... 44 6.6 1
(DX243500) OR_ABa0128F17.f OR_ABa Oryza ridleyi genomic clon... 44 6.6 1
(CZ986361) 206046 Tomato MboI BAC Library Solanum lycopersic... 44 6.6 1
(CZ516602) GMW2-36N21a.b2 GMW2 Glycine max genomic, genomic ... 44 6.6 1
(CZ497937) OA_BBa0141P21.f OA_BBa Oryza alta genomic clone O... 44 6.6 1
(CZ148559) OA_BBa0059M13.r OA_BBa Oryza alta genomic clone O... 44 6.6 1
(CL123309) ISB1-83I5_T7.1 ISB1 Xenopus (Silurana) tropicalis... 44 6.6 1
(BZ396865) EINEA26TR EI_10_12_KB Entamoeba invadens genomic ... 44 6.6 1
(BZ392303) EINAB68TF EI_10_12_KB Entamoeba invadens genomic ... 44 6.6 1
(BZ046133) lkf34d09.b1 B.oleracea002 Brassica oleracea genom... 44 6.6 1
(DW345091) PP_LEc0021K13f Peach shoot Prunus persica cDNA cl... 44 6.6 1
(DW340989) PP_LEc0002D21f Peach shoot Prunus persica cDNA cl... 44 6.6 1
(AM499682) Epiperipatus sp. TB-2001 adult EST, clone bur-ann13. 44 6.6 1

>(BJ421675) Dictyostelium discoideum cDNA clone:ddv43p10, 5' end,
single read.
Length = 655

Score = 1298 bits (655), Expect = 0.0
Identities = 655/655 (100%)
Strand = Plus / Plus


Query: 1 ttttttaattaataatttcaattcattttctgcttatccttgtgatatgaataatgatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttttttaattaataatttcaattcattttctgcttatccttgtgatatgaataatgatgg 60


Query: 61 aattggtgatataatgataaataaagatcagttagcaatctatattatttatggtagtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aattggtgatataatgataaataaagatcagttagcaatctatattatttatggtagtag 120


Query: 121 aggtccttttacctcaccatatatcccagtttatgatggtgtcaaaggtacccgtttcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aggtccttttacctcaccatatatcccagtttatgatggtgtcaaaggtacccgtttcag 180


Query: 181 ttttttaggttgctcaataaattctaatgatcttccaaatgcatttggagattttaataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttttttaggttgctcaataaattctaatgatcttccaaatgcatttggagattttaataa 240


Query: 241 tgatggactaaatgattttggtattcaaacaaaacttcagtcgggtgactttatagcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgatggactaaatgattttggtattcaaacaaaacttcagtcgggtgactttatagcttt 300


Query: 301 tttggtttggggtaaaacagaatatccaccaacaacaacattaagtataaatctaaatcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttggtttggggtaaaacagaatatccaccaacaacaacattaagtataaatctaaatcc 360


Query: 361 attggatggtttggttataacaattgttggcaaccccgatccttgggctttatctcctag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attggatggtttggttataacaattgttggcaaccccgatccttgggctttatctcctag 420


Query: 421 attaggggatataaataatgatggatttgcagattttttactcagtggtaacatttacct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attaggggatataaataatgatggatttgcagattttttactcagtggtaacatttacct 480


Query: 481 cccattcaccattttgtatggtaataataaaaattatgcttcaaatccaatttatttaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cccattcaccattttgtatggtaataataaaaattatgcttcaaatccaatttatttaaa 540


Query: 541 agatcaagttggtgattgttcaataatgtcaattaatggccctgcgttggctattgatat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agatcaagttggtgattgttcaataatgtcaattaatggccctgcgttggctattgatat 600


Query: 601 tggtgattataactctgatggtattcatgatattacagcatctactaaaacaaca 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tggtgattataactctgatggtattcatgatattacagcatctactaaaacaaca 655

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 859,480,031
Number of extensions: 55154090
Number of successful extensions: 4389534
Number of sequences better than 10.0: 110
Length of query: 664
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 640
Effective length of database: 97,308,875,965
Effective search space: 62277680617600
Effective search space used: 62277680617600
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 7
Homology vs Protein
Query= Contig-U13647-1 (Contig-U13647-1Q) /CSM_Contig/Contig-U13647-1Q.Seq.d
(664 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC115598_37(AC115598|pid:none) Dictyostelium discoideum chromoso... 384 e-105
CP001037_5725(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 66 8e-10
CP000383_760(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340... 65 2e-09
CP001037_4412(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 64 4e-09
CP000685_1979(CP000685|pid:none) Flavobacterium johnsoniae UW101... 61 3e-08
CP001037_175(CP001037|pid:none) Nostoc punctiforme PCC 73102, co... 61 3e-08
CP001037_3825(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 58 3e-07
CP001037_4908(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 57 5e-07
CP000383_761(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340... 56 8e-07
CP001037_1355(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 56 8e-07
CP000127_1680(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 53 9e-06
CP000360_4013(CP000360|pid:none) Acidobacteria bacterium Ellin34... 50 8e-05
CP000360_3590(CP000360|pid:none) Acidobacteria bacterium Ellin34... 49 2e-04
CP000100_1335(CP000100|pid:none) Synechococcus elongatus PCC 794... 48 2e-04
AP008231_216(AP008231|pid:none) Synechococcus elongatus PCC 6301... 48 2e-04
BA000030_3395(BA000030|pid:none) Streptomyces avermitilis MA-468... 48 2e-04
BA000022_587(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA, ... 48 2e-04
CP000127_1999(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 48 3e-04
CP000393_1502(CP000393|pid:none) Trichodesmium erythraeum IMS101... 47 4e-04
CP001322_854(CP001322|pid:none) Desulfatibacillum alkenivorans A... 47 4e-04
CP000828_1184(CP000828|pid:none) Acaryochloris marina MBIC11017,... 47 5e-04
CU466930_1697(CU466930|pid:none) Candidatus Cloacamonas acidamin... 45 0.002
CP001037_287(CP001037|pid:none) Nostoc punctiforme PCC 73102, co... 45 0.002
CP000393_515(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 45 0.003
CP000807_53(CP000807|pid:none) Cyanothece sp. ATCC 51142 linear ... 44 0.003
CP000117_580(CP000117|pid:none) Anabaena variabilis ATCC 29413, ... 44 0.004
BA000022_1965(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,... 44 0.006
CP001349_6057(CP001349|pid:none) Methylobacterium nodulans ORS 2... 44 0.006
CP000393_566(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 44 0.006
CP000875_1919(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 43 0.007
CP000934_127(CP000934|pid:none) Cellvibrio japonicus Ueda107, co... 43 0.010
AE016823_21(AE016823|pid:none) Leptospira interrogans serovar Co... 42 0.012
AE010300_22(AE010300|pid:none) Leptospira interrogans serovar la... 42 0.012
DQ156123_5(DQ156123|pid:none) Leptospira interrogans hypothetica... 42 0.016
CP001322_1830(CP001322|pid:none) Desulfatibacillum alkenivorans ... 42 0.016
BA000030_5294(BA000030|pid:none) Streptomyces avermitilis MA-468... 42 0.021
BA000045_1840(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 41 0.028
CP000108_1573(CP000108|pid:none) Chlorobium chlorochromatii CaD3... 41 0.028
BA000045_4120(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 41 0.028
EU643489_9(EU643489|pid:none) Philodina roseola clone 182F10 NHL... 41 0.028
CP000821_705(CP000821|pid:none) Shewanella sediminis HAW-EB3, co... 40 0.047
CP001124_1801(CP001124|pid:none) Geobacter bemidjiensis Bem, com... 40 0.047
CP000360_4705(CP000360|pid:none) Acidobacteria bacterium Ellin34... 40 0.062
CP001472_2133(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 40 0.062
CP000393_3878(CP000393|pid:none) Trichodesmium erythraeum IMS101... 40 0.062
CP000360_1384(CP000360|pid:none) Acidobacteria bacterium Ellin34... 40 0.081
AE017180_1530(AE017180|pid:none) Geobacter sulfurreducens PCA, c... 39 0.11
CP000393_325(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 39 0.11
CP000127_685(CP000127|pid:none) Nitrosococcus oceani ATCC 19707,... 39 0.14
AP009552_2906(AP009552|pid:none) Microcystis aeruginosa NIES-843... 39 0.14
CP000393_575(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 39 0.14
CP000388_1465(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 39 0.18
CP000473_7482(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 39 0.18
CP001472_1679(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 39 0.18
AM746676_2443(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 38 0.23
CP000393_1210(CP000393|pid:none) Trichodesmium erythraeum IMS101... 38 0.31
CP000393_505(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 38 0.31
CP001032_1787(CP001032|pid:none) Opitutus terrae PB90-1, complet... 37 0.40
AY861664_1(AY861664|pid:none) Danio rerio integrin alpha 5 (itga... 37 0.52
AY550244_1(AY550244|pid:none) Danio rerio integrin alpha 5 (itga... 37 0.52
CP000473_2069(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 37 0.68
CP000393_1503(CP000393|pid:none) Trichodesmium erythraeum IMS101... 37 0.68
AM910992_33(AM910992|pid:none) Plasmodium knowlesi strain H chro... 36 0.89
CP000117_2765(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 36 0.89
CP000844_173(CP000844|pid:none) Acaryochloris marina MBIC11017 p... 36 0.89
CP000473_1938(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 35 1.5
CP001277_2028(CP001277|pid:none) Candidatus Hamiltonella defensa... 35 2.0
CP000158_221(CP000158|pid:none) Hyphomonas neptunium ATCC 15444,... 35 2.0
CP000282_2989(CP000282|pid:none) Saccharophagus degradans 2-40, ... 35 2.0
BX571869_254(BX571869|pid:none) Photorhabdus luminescens subsp. ... 35 2.0
AM746676_8414(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 35 2.6
CP000360_460(CP000360|pid:none) Acidobacteria bacterium Ellin345... 35 2.6
(Q7RRM4) RecName: Full=T-cell immunomodulatory protein homolog; ... 35 2.6
CP001032_489(CP001032|pid:none) Opitutus terrae PB90-1, complete... 35 2.6
CP000393_3954(CP000393|pid:none) Trichodesmium erythraeum IMS101... 35 2.6
CP000473_1568(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 34 3.4
CP000393_513(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 34 3.4
CP000474_3651(CP000474|pid:none) Arthrobacter aurescens TC1, com... 34 3.4
CP001287_2824(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 34 4.4
EF121977_1(EF121977|pid:none) Rattus norvegicus strain DSS AP1 g... 34 4.4
AJ537472_4(AJ537472|pid:none) Arthrobacter ilicis ORF16, ORF15, ... 34 4.4
AF364060_1(AF364060|pid:none) Cyanothece sp. PCC 8801 Ca-binding... 34 4.4
AF242544_1(AF242544|pid:none) Rattus norvegicus gamma-synergin m... 34 4.4
CP000159_1126(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 34 4.4
EF121982_1(EF121982|pid:none) Rattus norvegicus strain LEW AP1 g... 34 4.4
EF121979_1(EF121979|pid:none) Rattus norvegicus strain DSS AP1 g... 34 4.4
AE016823_2194(AE016823|pid:none) Leptospira interrogans serovar ... 34 4.4
CP000478_1606(CP000478|pid:none) Syntrophobacter fumaroxidans MP... 33 5.8
CP000360_1680(CP000360|pid:none) Acidobacteria bacterium Ellin34... 33 5.8
CP000360_385(CP000360|pid:none) Acidobacteria bacterium Ellin345... 33 5.8
CP000388_883(CP000388|pid:none) Pseudoalteromonas atlantica T6c,... 33 5.8
CP000807_323(CP000807|pid:none) Cyanothece sp. ATCC 51142 linear... 33 7.5
CP001048_3309(CP001048|pid:none) Yersinia pseudotuberculosis PB1... 33 7.5
CP000821_3712(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 33 7.5
AY283519_1(AY283519|pid:none) Brassica napus CLV1-like receptor ... 33 7.5
CP001357_842(CP001357|pid:none) Brachyspira hyodysenteriae WA1, ... 33 7.5
BA000045_995(BA000045|pid:none) Gloeobacter violaceus PCC 7421 D... 33 7.5
CP000473_6045(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 33 7.5
AL939113_66(AL939113|pid:none) Streptomyces coelicolor A3(2) com... 33 7.5
AF177914_1(AF177914|pid:none) Strongylocentrotus purpuratus alph... 33 7.5
CP000503_2692(CP000503|pid:none) Shewanella sp. W3-18-1, complet... 33 7.5
CP000851_3348(CP000851|pid:none) Shewanella pealeana ATCC 700345... 33 9.8
AM285316_22(AM285316|pid:none) Spiroplasma citri GII3-3X chromos... 33 9.8

>AC115598_37(AC115598|pid:none) Dictyostelium discoideum chromosome
2 map 581427-735498 strain AX4, complete sequence.
Length = 998

Score = 384 bits (985), Expect = e-105
Identities = 186/218 (85%), Positives = 196/218 (89%)
Frame = +2

Query: 2 FLINNFNSFSAYPCDMNNDGIGDIMINKDQLAIYIIYGSRGPFTSPYIPVYDGVKGTRFS 181
FLINNFNS++AYP DMNNDGIGDIMIN+ Q+AI IIYGSRGPFTSPYIPVYDGVKGT FS
Sbjct: 238 FLINNFNSYAAYPYDMNNDGIGDIMINRGQIAIDIIYGSRGPFTSPYIPVYDGVKGTSFS 297

Query: 182 FLGCSINSNDLPNAFGDFNNDGLNDFGIQTKLQSGDFIAFLVWGKTEYPPTTTLSINLNP 361
FLGCS N+N LPNAFGDFNNDGLNDFGI TK SGD+IAFLVWGKTEYPPTTTLSINLNP
Sbjct: 298 FLGCSTNNNALPNAFGDFNNDGLNDFGIPTKHTSGDYIAFLVWGKTEYPPTTTLSINLNP 357

Query: 362 LDGLVITIVGNPDPWALSPRLGDINNDGFADFLLSGNIYLPFTILYGNNKNYASNPIYLK 541
DGLVI +VGN WALSPRLGDINNDGFADFL+SGN LPFTILYGNNKNYASNP+YLK
Sbjct: 358 SDGLVIAVVGNIYSWALSPRLGDINNDGFADFLISGNTDLPFTILYGNNKNYASNPVYLK 417

Query: 542 DQVGDCSIMSINGPALAIDIGDYNSDGIHDITASTKTT 655
DQVGDCS MSING A AIDIGDYNSDGI DITAS +T
Sbjct: 418 DQVGDCSKMSINGYATAIDIGDYNSDGIDDITASILST 455

Score = 47.0 bits (110), Expect = 5e-04
Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 18/215 (8%)
Frame = +2

Query: 44 DMNNDGIGDIMINKDQLAIYIIYGSRGPFTSPYIPVYDGVK---GTRFSFLGCSINSNDL 214
D+N DG D++ + +Y+ Y GP S + D K F FL ++ N++
Sbjct: 58 DLNGDGNDDLIYAINSEGLYVFY---GPLASNFNFQTDTSKINGSNGFIFLNTAVRMNNI 114

Query: 215 PNAFGDFNNDGLNDFGIQTKLQSGDFIAFLVWGKTEYPPTTTLSINLNPLDGLVITIVGN 394
A GD NNDG +D + + G +++G + +T S +N +G I+ V +
Sbjct: 115 --AVGDINNDGFDDIALFLFIIPGKLC--VIYGTDQIISPSTFS-TVNGNNGFYISHVSS 169

Query: 395 PD-PWALSPRLGDINNDGFADFLLSGNI-----------YLPFTILYGN---NKNYASNP 529
+ + + D N D D +S +I Y+ F I G N + +P
Sbjct: 170 SNIAFGFVRSIIDFNGDSIKDLFVSASIGTYVGTGTPISYMIFGINGGKFQVNSQFEFDP 229

Query: 530 IYLKDQVGDCSIMSINGPALAIDIGDYNSDGIHDI 634
L G + N + A D N+DGI DI
Sbjct: 230 STLN---GSNGFLINNFNSYAAYPYDMNNDGIGDI 261

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,012,962,517
Number of extensions: 21224635
Number of successful extensions: 50640
Number of sequences better than 10.0: 103
Number of HSP's gapped: 50084
Number of HSP's successfully gapped: 232
Length of query: 221
Length of database: 1,051,180,864
Length adjustment: 124
Effective length of query: 97
Effective length of database: 649,847,548
Effective search space: 63035212156
Effective search space used: 63035212156
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.80 gvh: 0.37 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for Contig-U13647-1 is cyt

VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0