Contig-U13647-1 |
Contig ID |
Contig-U13647-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
664 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
5788790 |
End point |
5789444 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U13647 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.13 |
Homology vs DNA |
Query= Contig-U13647-1 (Contig-U13647-1Q) /CSM_Contig/Contig-U13647-1Q.Seq.d (664 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ421675) Dictyostelium discoideum cDNA clone:ddv43p10, 5' ... 1298 0.0 1 (AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 377 0.0 4 (EJ895640) 1093018465687 Global-Ocean-Sampling_GS-30-02-01-1... 50 3e-04 2 (EJ782546) 1093017288510 Global-Ocean-Sampling_GS-30-02-01-1... 44 0.020 2 (EJ864804) 1093018268609 Global-Ocean-Sampling_GS-30-02-01-1... 44 0.021 2 (AC201150) Strongylocentrotus purpuratus clone R3-14E24, WOR... 36 0.24 2 (AC174882) Strongylocentrotus purpuratus clone R3-1113G17, W... 36 0.24 2 (EF635417) Prunus japonica S1-RNase (S) gene, S1 allele, par... 42 0.32 2 (EJ999522) 1093025016568 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.42 1 (EJ961305) 1093022004592 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.42 1 (EJ203795) 1092344319769 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.42 1 (DW343362) PP_LEc0014N23f Peach shoot Prunus persica cDNA cl... 48 0.42 1 (CN750730) ApDT-XXIX-F11 ApDT Acyrthosiphon pisum cDNA clone... 48 0.42 1 (BJ339599) Dictyostelium discoideum cDNA clone:dda65l23, 5' ... 44 0.72 2 (AC178481) Strongylocentrotus purpuratus clone R3-113F05, WO... 46 0.73 6 (AL390117) Human DNA sequence from clone RP11-116P22 on chro... 44 0.77 3 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 0.84 12 (AY630340) Philaenus spumarius mitochondrion, complete genome. 34 0.88 4 (AC189654) Brassica rapa subsp. pekinensis clone KBrS012H18,... 34 0.91 2 (EK135828) 1095403480298 Global-Ocean-Sampling_GS-31-01-01-1... 42 0.92 2 (EK168920) 1095458065858 Global-Ocean-Sampling_GS-31-01-01-1... 42 1.1 2 (ER566732) 1093015773157 Global-Ocean-Sampling_GS-36-01-01-2... 36 1.1 2 (EJ804852) 1093017451913 Global-Ocean-Sampling_GS-30-02-01-1... 36 1.2 2 (EJ884811) 1093018412581 Global-Ocean-Sampling_GS-30-02-01-1... 36 1.2 2 (AC121789) Mus musculus BAC clone RP23-398C14 from 1, comple... 46 1.7 1 (AC180718) Strongylocentrotus purpuratus clone R3-3085L24, W... 46 1.7 1 (AC180460) Strongylocentrotus purpuratus clone R3-3102D04, W... 46 1.7 1 (EK342952) 1095467073448 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.7 1 (DY229674) ID0AAK7YL13CM1 ApHL3SD Acyrthosiphon pisum cDNA c... 46 1.7 1 (CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 46 1.7 1 (AC154488) Mus musculus BAC clone RP24-119K2 from chromosome... 38 2.1 4 (AC132737) Rattus norvegicus clone CH230-18D9, WORKING DRAFT... 40 2.4 2 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 32 2.4 10 (AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 34 2.5 7 (CP000439) Francisella tularensis subsp. novicida U112, comp... 32 2.8 2 (EK031701) 1092955413921 Global-Ocean-Sampling_GS-31-01-01-1... 38 3.2 2 (DX507463) 803_5_14286491_16654_44238_034 Limanthese alba me... 38 3.2 2 (EK458159) 1095468708853 Global-Ocean-Sampling_GS-32-01-01-1... 38 3.7 2 (EJ415762) 1093012180433 Global-Ocean-Sampling_GS-28-01-01-1... 40 3.7 2 (ET846979) CHO_OF390xk08r1.ab1 CHO_OF Nicotiana tabacum geno... 38 3.7 2 (EK464484) 1095469413240 Global-Ocean-Sampling_GS-32-01-01-1... 34 3.7 2 (ER513150) 1093015470650 Global-Ocean-Sampling_GS-35-01-01-1... 36 3.7 2 (EK466139) 1095469423608 Global-Ocean-Sampling_GS-32-01-01-1... 34 3.9 2 (AC132833) Mus musculus chromosome 15, clone RP24-498G7, com... 38 4.2 5 (EJ059118) 1095456053165 Global-Ocean-Sampling_GS-26-01-01-1... 32 4.3 2 (EJ265450) 1095351007982 Global-Ocean-Sampling_GS-27-01-01-1... 34 4.8 3 (EA683316) Sequence 62195 from patent US 7365185. 44 5.3 2 (AC095200) Rattus norvegicus clone CH230-9A13, *** SEQUENCIN... 38 5.9 3 (AL592404) Mouse DNA sequence from clone RP23-425D20 on chro... 44 5.9 2 (CR352325) Mouse DNA sequence from clone RP23-333J5 on chrom... 44 6.1 2 (BX323818) Zebrafish DNA sequence from clone DKEY-48H7 in li... 44 6.6 1 (AC116383) Mus musculus chromosome 5, clone RP23-15P21, comp... 44 6.6 1 (AC099975) Mus musculus chromosome 5, clone RP23-23A2, compl... 44 6.6 1 (AP008217) Oryza sativa (japonica cultivar-group) genomic DN... 44 6.6 1 (AP006492) Cyanidioschyzon merolae DNA, chromosome 10, compl... 44 6.6 1 (AM440294) Vitis vinifera contig VV78X042878.4, whole genome... 44 6.6 1 (AC149635) Genomic sequence for broccoli [Brassica oleracea ... 44 6.6 1 (AC135864) Oryza sativa Japonica Group chromosome 11 clone O... 44 6.6 1 (AC135242) Oryza sativa Japonica Group chromosome 11 clone O... 44 6.6 1 (AC104269) Caenorhabditis briggsae cosmid CB047C11, complete... 44 6.6 1 (AC025271) Homo sapiens chromosome 15 clone CTD-2515H24 map ... 44 6.6 1 (AC016525) Homo sapiens chromosome 15 clone RP11-358M11 map ... 44 6.6 1 (AC152460) Atelerix albiventris clone LB4-35D1, WORKING DRAF... 44 6.6 1 (AC112354) Rattus norvegicus clone CH230-291B17, *** SEQUENC... 44 6.6 1 (AC110831) Rattus norvegicus clone CH230-242B20, *** SEQUENC... 44 6.6 1 (AC046203) Homo sapiens chromosome 15 clone RP11-484A10 map ... 44 6.6 1 (AC027610) Homo sapiens chromosome 1 clone RP11-103J13, WORK... 44 6.6 1 (CU407153) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.6 1 (AL138929) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 6.6 1 (AC232055) Solanum tuberosum strain Diploid genotype RH89-03... 44 6.6 1 (AC180362) Strongylocentrotus purpuratus clone R3-3115B14, W... 44 6.6 1 (AC180048) Strongylocentrotus purpuratus clone R3-25E18, WOR... 44 6.6 1 (AC177073) Strongylocentrotus purpuratus clone R3-4004K17, W... 44 6.6 1 (AC176585) Strongylocentrotus purpuratus clone R3-3077I21, W... 44 6.6 1 (AK160603) Mus musculus 10 days embryo whole body cDNA, RIKE... 44 6.6 1 (FH138192) CHO_OF3072xh18f2.ab1 CHO_OF3 Nicotiana tabacum ge... 44 6.6 1 (ER630519) 1093018422807 Global-Ocean-Sampling_GS-36-01-01-2... 44 6.6 1 (EK290205) 1095462327888 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.6 1 (EK154887) 1095456070466 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.6 1 (EJ711295) 1092956076680 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.6 1 (EJ647506) 1092351918726 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.6 1 (EJ589844) 1092961042709 Global-Ocean-Sampling_GS-29-01-01-1... 44 6.6 1 (EJ578112) 1092960127473 Global-Ocean-Sampling_GS-29-01-01-1... 44 6.6 1 (EJ545621) 1092956084737 Global-Ocean-Sampling_GS-29-01-01-1... 44 6.6 1 (EJ466972) 1095403357521 Global-Ocean-Sampling_GS-28-01-01-1... 44 6.6 1 (EJ350087) 1092963577592 Global-Ocean-Sampling_GS-28-01-01-1... 44 6.6 1 (EJ234590) 1092405677873 Global-Ocean-Sampling_GS-27-01-01-1... 44 6.6 1 (EJ201685) 1092344307103 Global-Ocean-Sampling_GS-27-01-01-1... 44 6.6 1 (DX243500) OR_ABa0128F17.f OR_ABa Oryza ridleyi genomic clon... 44 6.6 1 (CZ986361) 206046 Tomato MboI BAC Library Solanum lycopersic... 44 6.6 1 (CZ516602) GMW2-36N21a.b2 GMW2 Glycine max genomic, genomic ... 44 6.6 1 (CZ497937) OA_BBa0141P21.f OA_BBa Oryza alta genomic clone O... 44 6.6 1 (CZ148559) OA_BBa0059M13.r OA_BBa Oryza alta genomic clone O... 44 6.6 1 (CL123309) ISB1-83I5_T7.1 ISB1 Xenopus (Silurana) tropicalis... 44 6.6 1 (BZ396865) EINEA26TR EI_10_12_KB Entamoeba invadens genomic ... 44 6.6 1 (BZ392303) EINAB68TF EI_10_12_KB Entamoeba invadens genomic ... 44 6.6 1 (BZ046133) lkf34d09.b1 B.oleracea002 Brassica oleracea genom... 44 6.6 1 (DW345091) PP_LEc0021K13f Peach shoot Prunus persica cDNA cl... 44 6.6 1 (DW340989) PP_LEc0002D21f Peach shoot Prunus persica cDNA cl... 44 6.6 1 (AM499682) Epiperipatus sp. TB-2001 adult EST, clone bur-ann13. 44 6.6 1
>(BJ421675) Dictyostelium discoideum cDNA clone:ddv43p10, 5' end, single read. Length = 655
Score = 1298 bits (655), Expect = 0.0 Identities = 655/655 (100%) Strand = Plus / Plus
Query: 1 ttttttaattaataatttcaattcattttctgcttatccttgtgatatgaataatgatgg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ttttttaattaataatttcaattcattttctgcttatccttgtgatatgaataatgatgg 60
Query: 61 aattggtgatataatgataaataaagatcagttagcaatctatattatttatggtagtag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aattggtgatataatgataaataaagatcagttagcaatctatattatttatggtagtag 120
Query: 121 aggtccttttacctcaccatatatcccagtttatgatggtgtcaaaggtacccgtttcag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aggtccttttacctcaccatatatcccagtttatgatggtgtcaaaggtacccgtttcag 180
Query: 181 ttttttaggttgctcaataaattctaatgatcttccaaatgcatttggagattttaataa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ttttttaggttgctcaataaattctaatgatcttccaaatgcatttggagattttaataa 240
Query: 241 tgatggactaaatgattttggtattcaaacaaaacttcagtcgggtgactttatagcttt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 tgatggactaaatgattttggtattcaaacaaaacttcagtcgggtgactttatagcttt 300
Query: 301 tttggtttggggtaaaacagaatatccaccaacaacaacattaagtataaatctaaatcc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tttggtttggggtaaaacagaatatccaccaacaacaacattaagtataaatctaaatcc 360
Query: 361 attggatggtttggttataacaattgttggcaaccccgatccttgggctttatctcctag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 attggatggtttggttataacaattgttggcaaccccgatccttgggctttatctcctag 420
Query: 421 attaggggatataaataatgatggatttgcagattttttactcagtggtaacatttacct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 attaggggatataaataatgatggatttgcagattttttactcagtggtaacatttacct 480
Query: 481 cccattcaccattttgtatggtaataataaaaattatgcttcaaatccaatttatttaaa 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 cccattcaccattttgtatggtaataataaaaattatgcttcaaatccaatttatttaaa 540
Query: 541 agatcaagttggtgattgttcaataatgtcaattaatggccctgcgttggctattgatat 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 agatcaagttggtgattgttcaataatgtcaattaatggccctgcgttggctattgatat 600
Query: 601 tggtgattataactctgatggtattcatgatattacagcatctactaaaacaaca 655 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 tggtgattataactctgatggtattcatgatattacagcatctactaaaacaaca 655
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 859,480,031 Number of extensions: 55154090 Number of successful extensions: 4389534 Number of sequences better than 10.0: 110 Length of query: 664 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 640 Effective length of database: 97,308,875,965 Effective search space: 62277680617600 Effective search space used: 62277680617600 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 7 |
Homology vs Protein |
Query= Contig-U13647-1 (Contig-U13647-1Q) /CSM_Contig/Contig-U13647-1Q.Seq.d (664 letters)
Database: nrp_B 3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
AC115598_37(AC115598|pid:none) Dictyostelium discoideum chromoso... 384 e-105 CP001037_5725(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 66 8e-10 CP000383_760(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340... 65 2e-09 CP001037_4412(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 64 4e-09 CP000685_1979(CP000685|pid:none) Flavobacterium johnsoniae UW101... 61 3e-08 CP001037_175(CP001037|pid:none) Nostoc punctiforme PCC 73102, co... 61 3e-08 CP001037_3825(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 58 3e-07 CP001037_4908(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 57 5e-07 CP000383_761(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340... 56 8e-07 CP001037_1355(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 56 8e-07 CP000127_1680(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 53 9e-06 CP000360_4013(CP000360|pid:none) Acidobacteria bacterium Ellin34... 50 8e-05 CP000360_3590(CP000360|pid:none) Acidobacteria bacterium Ellin34... 49 2e-04 CP000100_1335(CP000100|pid:none) Synechococcus elongatus PCC 794... 48 2e-04 AP008231_216(AP008231|pid:none) Synechococcus elongatus PCC 6301... 48 2e-04 BA000030_3395(BA000030|pid:none) Streptomyces avermitilis MA-468... 48 2e-04 BA000022_587(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA, ... 48 2e-04 CP000127_1999(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 48 3e-04 CP000393_1502(CP000393|pid:none) Trichodesmium erythraeum IMS101... 47 4e-04 CP001322_854(CP001322|pid:none) Desulfatibacillum alkenivorans A... 47 4e-04 CP000828_1184(CP000828|pid:none) Acaryochloris marina MBIC11017,... 47 5e-04 CU466930_1697(CU466930|pid:none) Candidatus Cloacamonas acidamin... 45 0.002 CP001037_287(CP001037|pid:none) Nostoc punctiforme PCC 73102, co... 45 0.002 CP000393_515(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 45 0.003 CP000807_53(CP000807|pid:none) Cyanothece sp. ATCC 51142 linear ... 44 0.003 CP000117_580(CP000117|pid:none) Anabaena variabilis ATCC 29413, ... 44 0.004 BA000022_1965(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,... 44 0.006 CP001349_6057(CP001349|pid:none) Methylobacterium nodulans ORS 2... 44 0.006 CP000393_566(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 44 0.006 CP000875_1919(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 43 0.007 CP000934_127(CP000934|pid:none) Cellvibrio japonicus Ueda107, co... 43 0.010 AE016823_21(AE016823|pid:none) Leptospira interrogans serovar Co... 42 0.012 AE010300_22(AE010300|pid:none) Leptospira interrogans serovar la... 42 0.012 DQ156123_5(DQ156123|pid:none) Leptospira interrogans hypothetica... 42 0.016 CP001322_1830(CP001322|pid:none) Desulfatibacillum alkenivorans ... 42 0.016 BA000030_5294(BA000030|pid:none) Streptomyces avermitilis MA-468... 42 0.021 BA000045_1840(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 41 0.028 CP000108_1573(CP000108|pid:none) Chlorobium chlorochromatii CaD3... 41 0.028 BA000045_4120(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 41 0.028 EU643489_9(EU643489|pid:none) Philodina roseola clone 182F10 NHL... 41 0.028 CP000821_705(CP000821|pid:none) Shewanella sediminis HAW-EB3, co... 40 0.047 CP001124_1801(CP001124|pid:none) Geobacter bemidjiensis Bem, com... 40 0.047 CP000360_4705(CP000360|pid:none) Acidobacteria bacterium Ellin34... 40 0.062 CP001472_2133(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 40 0.062 CP000393_3878(CP000393|pid:none) Trichodesmium erythraeum IMS101... 40 0.062 CP000360_1384(CP000360|pid:none) Acidobacteria bacterium Ellin34... 40 0.081 AE017180_1530(AE017180|pid:none) Geobacter sulfurreducens PCA, c... 39 0.11 CP000393_325(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 39 0.11 CP000127_685(CP000127|pid:none) Nitrosococcus oceani ATCC 19707,... 39 0.14 AP009552_2906(AP009552|pid:none) Microcystis aeruginosa NIES-843... 39 0.14 CP000393_575(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 39 0.14 CP000388_1465(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 39 0.18 CP000473_7482(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 39 0.18 CP001472_1679(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 39 0.18 AM746676_2443(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 38 0.23 CP000393_1210(CP000393|pid:none) Trichodesmium erythraeum IMS101... 38 0.31 CP000393_505(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 38 0.31 CP001032_1787(CP001032|pid:none) Opitutus terrae PB90-1, complet... 37 0.40 AY861664_1(AY861664|pid:none) Danio rerio integrin alpha 5 (itga... 37 0.52 AY550244_1(AY550244|pid:none) Danio rerio integrin alpha 5 (itga... 37 0.52 CP000473_2069(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 37 0.68 CP000393_1503(CP000393|pid:none) Trichodesmium erythraeum IMS101... 37 0.68 AM910992_33(AM910992|pid:none) Plasmodium knowlesi strain H chro... 36 0.89 CP000117_2765(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 36 0.89 CP000844_173(CP000844|pid:none) Acaryochloris marina MBIC11017 p... 36 0.89 CP000473_1938(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 35 1.5 CP001277_2028(CP001277|pid:none) Candidatus Hamiltonella defensa... 35 2.0 CP000158_221(CP000158|pid:none) Hyphomonas neptunium ATCC 15444,... 35 2.0 CP000282_2989(CP000282|pid:none) Saccharophagus degradans 2-40, ... 35 2.0 BX571869_254(BX571869|pid:none) Photorhabdus luminescens subsp. ... 35 2.0 AM746676_8414(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 35 2.6 CP000360_460(CP000360|pid:none) Acidobacteria bacterium Ellin345... 35 2.6 (Q7RRM4) RecName: Full=T-cell immunomodulatory protein homolog; ... 35 2.6 CP001032_489(CP001032|pid:none) Opitutus terrae PB90-1, complete... 35 2.6 CP000393_3954(CP000393|pid:none) Trichodesmium erythraeum IMS101... 35 2.6 CP000473_1568(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 34 3.4 CP000393_513(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 34 3.4 CP000474_3651(CP000474|pid:none) Arthrobacter aurescens TC1, com... 34 3.4 CP001287_2824(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 34 4.4 EF121977_1(EF121977|pid:none) Rattus norvegicus strain DSS AP1 g... 34 4.4 AJ537472_4(AJ537472|pid:none) Arthrobacter ilicis ORF16, ORF15, ... 34 4.4 AF364060_1(AF364060|pid:none) Cyanothece sp. PCC 8801 Ca-binding... 34 4.4 AF242544_1(AF242544|pid:none) Rattus norvegicus gamma-synergin m... 34 4.4 CP000159_1126(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 34 4.4 EF121982_1(EF121982|pid:none) Rattus norvegicus strain LEW AP1 g... 34 4.4 EF121979_1(EF121979|pid:none) Rattus norvegicus strain DSS AP1 g... 34 4.4 AE016823_2194(AE016823|pid:none) Leptospira interrogans serovar ... 34 4.4 CP000478_1606(CP000478|pid:none) Syntrophobacter fumaroxidans MP... 33 5.8 CP000360_1680(CP000360|pid:none) Acidobacteria bacterium Ellin34... 33 5.8 CP000360_385(CP000360|pid:none) Acidobacteria bacterium Ellin345... 33 5.8 CP000388_883(CP000388|pid:none) Pseudoalteromonas atlantica T6c,... 33 5.8 CP000807_323(CP000807|pid:none) Cyanothece sp. ATCC 51142 linear... 33 7.5 CP001048_3309(CP001048|pid:none) Yersinia pseudotuberculosis PB1... 33 7.5 CP000821_3712(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 33 7.5 AY283519_1(AY283519|pid:none) Brassica napus CLV1-like receptor ... 33 7.5 CP001357_842(CP001357|pid:none) Brachyspira hyodysenteriae WA1, ... 33 7.5 BA000045_995(BA000045|pid:none) Gloeobacter violaceus PCC 7421 D... 33 7.5 CP000473_6045(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 33 7.5 AL939113_66(AL939113|pid:none) Streptomyces coelicolor A3(2) com... 33 7.5 AF177914_1(AF177914|pid:none) Strongylocentrotus purpuratus alph... 33 7.5 CP000503_2692(CP000503|pid:none) Shewanella sp. W3-18-1, complet... 33 7.5 CP000851_3348(CP000851|pid:none) Shewanella pealeana ATCC 700345... 33 9.8 AM285316_22(AM285316|pid:none) Spiroplasma citri GII3-3X chromos... 33 9.8
>AC115598_37(AC115598|pid:none) Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. Length = 998
Score = 384 bits (985), Expect = e-105 Identities = 186/218 (85%), Positives = 196/218 (89%) Frame = +2
Query: 2 FLINNFNSFSAYPCDMNNDGIGDIMINKDQLAIYIIYGSRGPFTSPYIPVYDGVKGTRFS 181 FLINNFNS++AYP DMNNDGIGDIMIN+ Q+AI IIYGSRGPFTSPYIPVYDGVKGT FS Sbjct: 238 FLINNFNSYAAYPYDMNNDGIGDIMINRGQIAIDIIYGSRGPFTSPYIPVYDGVKGTSFS 297
Query: 182 FLGCSINSNDLPNAFGDFNNDGLNDFGIQTKLQSGDFIAFLVWGKTEYPPTTTLSINLNP 361 FLGCS N+N LPNAFGDFNNDGLNDFGI TK SGD+IAFLVWGKTEYPPTTTLSINLNP Sbjct: 298 FLGCSTNNNALPNAFGDFNNDGLNDFGIPTKHTSGDYIAFLVWGKTEYPPTTTLSINLNP 357
Query: 362 LDGLVITIVGNPDPWALSPRLGDINNDGFADFLLSGNIYLPFTILYGNNKNYASNPIYLK 541 DGLVI +VGN WALSPRLGDINNDGFADFL+SGN LPFTILYGNNKNYASNP+YLK Sbjct: 358 SDGLVIAVVGNIYSWALSPRLGDINNDGFADFLISGNTDLPFTILYGNNKNYASNPVYLK 417
Query: 542 DQVGDCSIMSINGPALAIDIGDYNSDGIHDITASTKTT 655 DQVGDCS MSING A AIDIGDYNSDGI DITAS +T Sbjct: 418 DQVGDCSKMSINGYATAIDIGDYNSDGIDDITASILST 455
Score = 47.0 bits (110), Expect = 5e-04 Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 18/215 (8%) Frame = +2
Query: 44 DMNNDGIGDIMINKDQLAIYIIYGSRGPFTSPYIPVYDGVK---GTRFSFLGCSINSNDL 214 D+N DG D++ + +Y+ Y GP S + D K F FL ++ N++ Sbjct: 58 DLNGDGNDDLIYAINSEGLYVFY---GPLASNFNFQTDTSKINGSNGFIFLNTAVRMNNI 114
Query: 215 PNAFGDFNNDGLNDFGIQTKLQSGDFIAFLVWGKTEYPPTTTLSINLNPLDGLVITIVGN 394 A GD NNDG +D + + G +++G + +T S +N +G I+ V + Sbjct: 115 --AVGDINNDGFDDIALFLFIIPGKLC--VIYGTDQIISPSTFS-TVNGNNGFYISHVSS 169
Query: 395 PD-PWALSPRLGDINNDGFADFLLSGNI-----------YLPFTILYGN---NKNYASNP 529 + + + D N D D +S +I Y+ F I G N + +P Sbjct: 170 SNIAFGFVRSIIDFNGDSIKDLFVSASIGTYVGTGTPISYMIFGINGGKFQVNSQFEFDP 229
Query: 530 IYLKDQVGDCSIMSINGPALAIDIGDYNSDGIHDI 634 L G + N + A D N+DGI DI Sbjct: 230 STLN---GSNGFLINNFNSYAAYPYDMNNDGIGDI 261
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3236559 Number of Hits to DB: 1,012,962,517 Number of extensions: 21224635 Number of successful extensions: 50640 Number of sequences better than 10.0: 103 Number of HSP's gapped: 50084 Number of HSP's successfully gapped: 232 Length of query: 221 Length of database: 1,051,180,864 Length adjustment: 124 Effective length of query: 97 Effective length of database: 649,847,548 Effective search space: 63035212156 Effective search space used: 63035212156 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 31 (16.5 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
1 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |