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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13627-1
Contig ID Contig-U13627-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13627-1 (Contig-U13627-1Q) /CSM_Contig/Contig-U13627-1Q.Seq.d
AAACCCATTCCATTTCCCATACCTTGATCAATGGGTTAGATCAAGTCATT
ATAATTCACAATTGATTTCAAATGGTATACAATTATTATTAAAGAATAAA
CAAGAATATCAATCACCAAAAACCACCACAATTTCAAAGAATGAATTAGC
AAATCTCGTTAAATTAAATCAAGAGAATTTCATTGAACAATTTAAATTAC
TCTCTCAATATTTAGAAGATCCAAAAACTTTTACCCAAATTTTAACTCTT
CTTAGAGTTAGTAATGATTTTGAAAATGTTACAGAAGTTGGTAAATTAGC
ATTTGCAAAATTAAAATTATTTAGAGAACATCAAAATAAAGTTAAAGAAT
TGAATGAAAATAAGAAATTATTAGTAGAAGAACGTGACCAACTCAATAAA
CAACGTCGTCGTCTTTCAACTGAGAAGCATTTATCTCTTAGAGAAATTAC
AATCACTGAACATTTAAATTCATTATTGGAGCCATATTATATTGCAAATT
TAGATTCATTGGCTTTAATCATTGGTAGTGTATTAATTGAAGCAAATACT
TGTGAAAGAAGTGAATNTGAAATTAAAGNGTCTTCAAAAGCATTTGAAAA
TCAATTTAAATATATCTCTGAACAAAGANAACGTNTCAATGNTAACATGA
GTCAAACAATTAAATTGGTAGTTGAAAATATTGAATCNATTGAAGATTTA
CTTAAAT
Gap no gap
Contig length 707
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 2139423
End point 2140130
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U13627
List of clone(s) 

est1=VHJ311Z,1,708
est2=VHE871Z,204,389
Translated Amino Acid sequence 
NPFHFPYLDQWVRSSHYNSQLISNGIQLLLKNKQEYQSPKTTTISKNELANLVKLNQENF
IEQFKLLSQYLEDPKTFTQILTLLRVSNDFENVTEVGKLAFAKLKLFREHQNKVKELNEN
KKLLVEERDQLNKQRRRLSTEKHLSLREITITEHLNSLLEPYYIANLDSLALIIGSVLIE
ANTCERSEXEIKXSSKAFENQFKYISEQRXRXNXNMSQTIKLVVENIESIEDLLK
Translated Amino Acid sequence (All Frames) 
Frame A:
kpipfpip*smg*iksl*ftidfkwytiiike*trisitknhhnfke*isksr*iksref
h*ti*itlsifrrsknfypnfnss*s***f*kcyrsw*isickikii*rtsk*s*rie*k
*eiisrrt*ptq*ttsssfn*eafis*rnynh*tfkfiigailyckfrfigfnhw*cin*
skyl*kk*x*n*xvfksi*ksi*iyl*tkxtxqx*hesnn*igs*ky*ix*rft*


Frame B:
NPFHFPYLDQWVRSSHYNSQLISNGIQLLLKNKQEYQSPKTTTISKNELANLVKLNQENF
IEQFKLLSQYLEDPKTFTQILTLLRVSNDFENVTEVGKLAFAKLKLFREHQNKVKELNEN
KKLLVEERDQLNKQRRRLSTEKHLSLREITITEHLNSLLEPYYIANLDSLALIIGSVLIE
ANTCERSEXEIKXSSKAFENQFKYISEQRXRXNXNMSQTIKLVVENIESIEDLLK


Frame C:
thsishtlingldqviiihn*fqmvynyy*rinkninhqkppqfqrmn*qisln*ikris
lnnlnyslni*kiqkllpkf*lflelvmilkmlqklvn*hlqn*nylenikiklkn*mki
rny**knvtnsinnvvvfqlrsiylleklqslni*ihywshiilqi*ihwl*slvvy*lk
qilvkevnxklkxlqkhlkinlnislnkxnvsmxt*vkqlnw*lkilnxlkiyln
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13627-1 (Contig-U13627-1Q)
/CSM_Contig/Contig-U13627-1Q.Seq.d
         (707 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13627-1 (Contig-U13627-1Q) /CSM_Contig/Conti...  1366  0.0
Contig-U06699-1 (Contig-U06699-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U01201-1 (Contig-U01201-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U13927-1 (Contig-U13927-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U02425-1 (Contig-U02425-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U12390-1 (Contig-U12390-1Q) /CSM_Contig/Conti...    36  0.050
Contig-U14715-1 (Contig-U14715-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U14171-1 (Contig-U14171-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U12530-1 (Contig-U12530-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U11660-1 (Contig-U11660-1Q) /CSM_Contig/Conti...    34  0.20

>Contig-U13627-1 (Contig-U13627-1Q) /CSM_Contig/Contig-U13627-1Q.Seq.d
          Length = 707

 Score = 1366 bits (689), Expect = 0.0
 Identities = 707/707 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacccattccatttcccataccttgatcaatgggttagatcaagtcattataattcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaacccattccatttcccataccttgatcaatgggttagatcaagtcattataattcaca 60

                                                                       
Query: 61  attgatttcaaatggtatacaattattattaaagaataaacaagaatatcaatcaccaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attgatttcaaatggtatacaattattattaaagaataaacaagaatatcaatcaccaaa 120

                                                                       
Query: 121 aaccaccacaatttcaaagaatgaattagcaaatctcgttaaattaaatcaagagaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaccaccacaatttcaaagaatgaattagcaaatctcgttaaattaaatcaagagaattt 180

                                                                       
Query: 181 cattgaacaatttaaattactctctcaatatttagaagatccaaaaacttttacccaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cattgaacaatttaaattactctctcaatatttagaagatccaaaaacttttacccaaat 240

                                                                       
Query: 241 tttaactcttcttagagttagtaatgattttgaaaatgttacagaagttggtaaattagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttaactcttcttagagttagtaatgattttgaaaatgttacagaagttggtaaattagc 300

                                                                       
Query: 301 atttgcaaaattaaaattatttagagaacatcaaaataaagttaaagaattgaatgaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atttgcaaaattaaaattatttagagaacatcaaaataaagttaaagaattgaatgaaaa 360

                                                                       
Query: 361 taagaaattattagtagaagaacgtgaccaactcaataaacaacgtcgtcgtctttcaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 taagaaattattagtagaagaacgtgaccaactcaataaacaacgtcgtcgtctttcaac 420

                                                                       
Query: 421 tgagaagcatttatctcttagagaaattacaatcactgaacatttaaattcattattgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgagaagcatttatctcttagagaaattacaatcactgaacatttaaattcattattgga 480

                                                                       
Query: 481 gccatattatattgcaaatttagattcattggctttaatcattggtagtgtattaattga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gccatattatattgcaaatttagattcattggctttaatcattggtagtgtattaattga 540

                                                                       
Query: 541 agcaaatacttgtgaaagaagtgaatntgaaattaaagngtcttcaaaagcatttgaaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agcaaatacttgtgaaagaagtgaatntgaaattaaagngtcttcaaaagcatttgaaaa 600

                                                                       
Query: 601 tcaatttaaatatatctctgaacaaaganaacgtntcaatgntaacatgagtcaaacaat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcaatttaaatatatctctgaacaaaganaacgtntcaatgntaacatgagtcaaacaat 660

                                                          
Query: 661 taaattggtagttgaaaatattgaatcnattgaagatttacttaaat 707
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 taaattggtagttgaaaatattgaatcnattgaagatttacttaaat 707


>Contig-U06699-1 (Contig-U06699-1Q) /CSM_Contig/Contig-U06699-1Q.Seq.d
          Length = 298

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 182 attgaacaatttaaattact 201
           ||||||||||||||||||||
Sbjct: 54  attgaacaatttaaattact 73


>Contig-U01201-1 (Contig-U01201-1Q) /CSM_Contig/Contig-U01201-1Q.Seq.d
          Length = 879

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 674 gaaaatattgaatcnattgaaga 696
           |||||||||||||| ||||||||
Sbjct: 320 gaaaatattgaatcaattgaaga 342


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,786
Number of Sequences: 6905
Number of extensions: 15786
Number of successful extensions: 1732
Number of sequences better than 10.0: 181
length of query: 707
length of database: 5,674,871
effective HSP length: 16
effective length of query: 691
effective length of database: 5,564,391
effective search space: 3844994181
effective search space used: 3844994181
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.13
Homology vs DNA 
Query= Contig-U13627-1 (Contig-U13627-1Q) /CSM_Contig/Contig-U13627-1Q.Seq.d
         (707 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ442174) Dictyostelium discoideum cDNA clone:ddv49f03, 3' ...   632   0.0    2
(BJ439512) Dictyostelium discoideum cDNA clone:ddv40n18, 3' ...   192   6e-49  2
(AC220348) Bos taurus clone CH240-361E16, WORKING DRAFT SEQU...    34   0.087  5
(EI905978) VUH2-43E23TR VUUBBa (VUH2) Vigna unguiculata geno...    50   0.11   1
(BW030536) Ciona intestinalis cDNA, clone:cibd015k24, 5' end...    50   0.11   1
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    48   0.35   8
(AP010492) Lotus japonicus genomic DNA, chromosome 3, clone:...    48   0.45   1
(AP007654) Lotus japonicus genomic DNA, chromosome 3, clone:...    48   0.45   1
(BJ347538) Dictyostelium discoideum cDNA clone:dda27k12, 3' ...    48   0.45   1
(BP114810) Plasmodium berghei strain ANKA cDNA, clone: FCPb3...    40   0.68   2
(CR962122) Medicago truncatula chromosome 5 clone mte1-46l20...    38   0.93   7
(CT954307) N.leucogenys DNA sequence from clone CH271-270A22.      32   0.94   2
(AC150023) Papio anubis clone RP41-412B3, WORKING DRAFT SEQU...    34   0.95   2
(CU210916) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.95   4
(EJ292060) 1095386005509 Global-Ocean-Sampling_GS-27-01-01-1...    42   1.2    2
(AC121313) Mus musculus chromosome 14, clone RP24-395N22, co...    40   1.6    4
(BV369939) S231P6417RB3.T0 BedlingtonTerrier Canis familiari...    46   1.8    1
(CQ850034) Sequence 503 from Patent EP1447413.                     46   1.8    1
(CQ719218) Sequence 5152 from Patent WO02068579.                   46   1.8    1
(AX746974) Sequence 499 from Patent EP1308459.                     46   1.8    1
(AR717999) Sequence 499 from patent US 6943241.                    46   1.8    1
(AR616660) Sequence 7 from patent US 6833247.                      46   1.8    1
(AR616659) Sequence 5 from patent US 6833247.                      46   1.8    1
(AL096711) Human DNA sequence from clone RP3-403A15 on chrom...    46   1.8    1
(AK127114) Homo sapiens cDNA FLJ45171 fis, clone BRAWH3045625.     46   1.8    1
(AK091424) Homo sapiens cDNA FLJ34105 fis, clone FCBBF3007977.     46   1.8    1
(AB007868) Homo sapiens KIAA0408 mRNA, partial cds.                46   1.8    1
(CT956037) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.8    1
(CT955955) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.8    1
(AP002450) Homo sapiens genomic DNA, chromosome 18q22 clone:...    46   1.8    1
(AC205236) Spermophilus tridecemlineatus clone VMRC20-32E17,...    46   1.8    1
(CR591062) full-length cDNA clone CS0DF033YG15 of Fetal brai...    46   1.8    1
(FH044990) CHO_OF3193xh18f2.ab1 CHO_OF3 Nicotiana tabacum ge...    46   1.8    1
(EI710439) IGBR12F06TF BAC library from the recurrent gliobl...    46   1.8    1
(DE981755) Macropus eugenii DNA, BAC clone: MEB1-190M04_R, 3...    46   1.8    1
(DB511736) Homo sapiens testis cDNA, RIKEN full-length enric...    46   1.8    1
(DB315609) Homo sapiens cDNA clone FCBBF3007977, 3' end, mRN...    46   1.8    1
(DA799924) Homo sapiens cDNA clone OCBBF3003740, 5' end, mRN...    46   1.8    1
(DA531071) Homo sapiens cDNA clone FEBRA2024227, 5' end, mRN...    46   1.8    1
(DA507096) Homo sapiens cDNA clone FCBBF3023044, 5' end, mRN...    46   1.8    1
(DA495088) Homo sapiens cDNA clone FCBBF3007574, 5' end, mRN...    46   1.8    1
(CR790169) Pongo abelii mRNA; EST DKFZp459J1057_r1 (from clo...    46   1.8    1
(CR628661) Pongo abelii mRNA; EST DKFZp459M1950_r1 (from clo...    46   1.8    1
(AL539509) human full-length cDNA 5-PRIME end of clone CS0DF...    46   1.8    1
(CB178594) is37c10.x1 HR85 islet Homo sapiens cDNA clone IMA...    46   1.8    1
(AI911498) wd25g12.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ...    46   1.8    1
(AI700177) wd41e06.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ...    46   1.8    1
(AI674081) wd18a01.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ...    46   1.8    1
(BQ710332) AGENCOURT_8351592 NIH_MGC_113 Homo sapiens cDNA c...    46   1.8    1
(AI093123) qa97d05.x1 Soares_fetal_heart_NbHH19W Homo sapien...    46   1.8    1
(BP394411) Homo sapiens mRNA, clone: hbt00149, 3' end, expre...    46   1.8    1
(BP251651) Homo sapiens cDNA clone: HPR08691, Sugano cDNA li...    46   1.8    1
(BP250881) Homo sapiens cDNA clone: HPR05439, Sugano cDNA li...    46   1.8    1
(BP249746) Homo sapiens cDNA clone: HPR00133, Sugano cDNA li...    46   1.8    1
(AA883488) am25f11.s1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ...    46   1.8    1
(AW002920) wq61a06.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone I...    46   1.8    1
(AC022183) Homo sapiens chromosome 11 clone RP11-149B15 map ...    42   2.7    2
(AB084781) Mycoplasma mobile genes for P123, Gli349, Gli521,...    38   3.1    5
(BX682557) Zebrafish DNA sequence from clone DKEY-288D17 in ...    42   3.4    3
(AC174936) Strongylocentrotus purpuratus clone R3-4016H14, W...    34   3.5    2
(EJ814981) 1093017510758 Global-Ocean-Sampling_GS-30-02-01-1...    42   3.8    2
(AE017308) Mycoplasma mobile 163K complete genome.                 32   3.9    13
(BU189705) AGENCOURT_7973705 NIH_MGC_72 Homo sapiens cDNA cl...    36   4.8    2
(AC196356) Dasypus novemcinctus clone VMRC5-309A5, WORKING D...    38   5.5    6
(CU234112) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   5.6    6
(CR847970) Zebrafish DNA sequence from clone DKEY-220D24 in ...    44   7.0    1
(AC111124) Mus musculus chromosome 7, clone RP23-331A21, com...    44   7.0    1
(AC110039) Mus musculus chromosome 7, clone RP23-264N6, comp...    44   7.0    1
(CU329670) Schizosaccharomyces pombe chromosome I.                 44   7.0    1
(CQ519709) Sequence 51576 from Patent WO0160860.                   44   7.0    1
(AX646009) Sequence 201 from Patent EP1270724.                     44   7.0    1
(CP000223) Drosophila melanogaster genomic scaffold 21100002...    44   7.0    1
(AC126345) Homo sapiens chromosome 11, clone RP11-100E23, co...    44   7.0    1
(AC097512) Homo sapiens BAC clone RP11-412P11 from 4, comple...    44   7.0    1
(AC091644) Homo sapiens chromosome 11, clone RP11-808H14, co...    44   7.0    1
(AC087377) Homo sapiens chromosome 11, clone RP11-292L2, com...    44   7.0    1
(AB065752) Homo sapiens gene for seven transmembrane helix r...    44   7.0    1
(AC161789) Medicago truncatula clone mth2-116a3, WORKING DRA...    44   7.0    1
(AC141615) Homo sapiens chromosome 16 clone RP11-93D18, WORK...    44   7.0    1
(AC131970) Homo sapiens chromosome 11 clone CTD-2305E23 map ...    44   7.0    1
(AC116271) Rattus norvegicus clone CH230-180M4, *** SEQUENCI...    44   7.0    1
(AC115094) Homo sapiens chromosome 11 clone CTD-2137A6 map 1...    44   7.0    1
(AC097690) Rattus norvegicus clone CH230-57B24, WORKING DRAF...    44   7.0    1
(CU694598) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.0    1
(AC026076) Homo sapiens chromosome 11 clone RP11-292L2, WORK...    44   7.0    1
(CU463251) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.0    1
(AP002491) Homo sapiens genomic DNA, chromosome 11q12 clone:...    44   7.0    1
(AP000723) Homo sapiens genomic DNA, chromosome 11p11, clone...    44   7.0    1
(AC209757) Macaca mulatta chromosome UNKNOWN clone CH250-212...    44   7.0    1
(AC198852) Spermophilus tridecemlineatus clone VMRC20-537K11...    44   7.0    1
(AC171798) Bos taurus clone CH240-60L3, WORKING DRAFT SEQUEN...    44   7.0    1
(AC167116) Rhinolophus ferrumequinum clone VMRC7-140E22, WOR...    44   7.0    1
(AC166633) Rhinolophus ferrumequinum clone VMRC7-354B16, WOR...    44   7.0    1
(AC019629) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   7.0    1
(BH167322) ENTRL44TF Entamoeba histolytica Sheared DNA Entam...    44   7.0    1
(BH149198) ENTPZ48TR Entamoeba histolytica Sheared DNA Entam...    44   7.0    1
(BH148381) ENTQE24TF Entamoeba histolytica Sheared DNA Entam...    44   7.0    1
(AZ682119) ENTKS01TF Entamoeba histolytica Sheared DNA Entam...    44   7.0    1
(AZ675512) ENTHY46TR Entamoeba histolytica Sheared DNA Entam...    44   7.0    1
(AZ539148) ENTCW16TR Entamoeba histolytica Sheared DNA Entam...    44   7.0    1

>(BJ442174) Dictyostelium discoideum cDNA clone:ddv49f03, 3' end,
           single read.
          Length = 708

 Score =  632 bits (319), Expect(2) = 0.0
 Identities = 337/337 (100%)
 Strand = Plus / Minus


Query: 371 ttagtagaagaacgtgaccaactcaataaacaacgtcgtcgtctttcaactgagaagcat 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ttagtagaagaacgtgaccaactcaataaacaacgtcgtcgtctttcaactgagaagcat 279


Query: 431 ttatctcttagagaaattacaatcactgaacatttaaattcattattggagccatattat 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ttatctcttagagaaattacaatcactgaacatttaaattcattattggagccatattat 219


Query: 491 attgcaaatttagattcattggctttaatcattggtagtgtattaattgaagcaaatact 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 attgcaaatttagattcattggctttaatcattggtagtgtattaattgaagcaaatact 159


Query: 551 tgtgaaagaagtgaatntgaaattaaagngtcttcaaaagcatttgaaaatcaatttaaa 610
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 tgtgaaagaagtgaatntgaaattaaagngtcttcaaaagcatttgaaaatcaatttaaa 99


Query: 611 tatatctctgaacaaaganaacgtntcaatgntaacatgagtcaaacaattaaattggta 670
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  tatatctctgaacaaaganaacgtntcaatgntaacatgagtcaaacaattaaattggta 39


Query: 671 gttgaaaatattgaatcnattgaagatttacttaaat 707
           |||||||||||||||||||||||||||||||||||||
Sbjct: 38  gttgaaaatattgaatcnattgaagatttacttaaat 2

 Score =  607 bits (306), Expect(2) = 0.0
 Identities = 306/306 (100%)
 Strand = Plus / Minus


Query: 1   aaacccattccatttcccataccttgatcaatgggttagatcaagtcattataattcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 aaacccattccatttcccataccttgatcaatgggttagatcaagtcattataattcaca 649


Query: 61  attgatttcaaatggtatacaattattattaaagaataaacaagaatatcaatcaccaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 attgatttcaaatggtatacaattattattaaagaataaacaagaatatcaatcaccaaa 589


Query: 121 aaccaccacaatttcaaagaatgaattagcaaatctcgttaaattaaatcaagagaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 aaccaccacaatttcaaagaatgaattagcaaatctcgttaaattaaatcaagagaattt 529


Query: 181 cattgaacaatttaaattactctctcaatatttagaagatccaaaaacttttacccaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cattgaacaatttaaattactctctcaatatttagaagatccaaaaacttttacccaaat 469


Query: 241 tttaactcttcttagagttagtaatgattttgaaaatgttacagaagttggtaaattagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tttaactcttcttagagttagtaatgattttgaaaatgttacagaagttggtaaattagc 409


Query: 301 atttgc 306
           ||||||
Sbjct: 408 atttgc 403

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 809,879,883
Number of extensions: 49696503
Number of successful extensions: 3940660
Number of sequences better than 10.0: 124
Length of query: 707
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 683
Effective length of database: 97,308,875,965
Effective search space: 66461962284095
Effective search space used: 66461962284095
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 7
Homology vs Protein 
Query= Contig-U13627-1 (Contig-U13627-1Q) /CSM_Contig/Contig-U13627-1Q.Seq.d
         (707 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC005170_25(AC005170|pid:none) Arabidopsis thaliana chromosome 2...    38   0.26
CP000847_880(CP000847|pid:none) Rickettsia akari str. Hartford, ...    36   1.0
AE000512_337(AE000512|pid:none) Thermotoga maritima MSB8, comple...    36   1.3
S33850(S33850;S32632) fibronecin-binding protein - Streptococcus...    35   2.2
CT573072_226(CT573072|pid:none) Kuenenia stuttgartiensis genome ...    35   2.9
FB811446_1(FB811446|pid:none) Sequence 30719 from Patent WO20080...    34   5.0
A86170(A86170) hypothetical protein [imported] - Arabidopsis tha...    34   5.0
AY320053_1(AY320053|pid:none) Legionella pneumophila type IV pil...    33   8.5
CP000675_1022(CP000675|pid:none) Legionella pneumophila str. Cor...    33   8.5
CR628336_996(CR628336|pid:none) Legionella pneumophila str. Pari...    33   8.5
CP000962_502(CP000962|pid:none) Clostridium botulinum A3 str. Lo...    33   8.5
CR628337_966(CR628337|pid:none) Legionella pneumophila str. Lens...    33   8.5

>AC005170_25(AC005170|pid:none) Arabidopsis thaliana chromosome 2
           clone T29E15 map CIC06C07, complete sequence.
           &AY072160_1(AY072160|pid:none)
           &AY088131_1(AY088131|pid:none)
           &AY096414_1(AY096414|pid:none) &B84632(B84632)
          Length = 312

 Score = 38.1 bits (87), Expect = 0.26
 Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 9/129 (6%)
 Frame = +2

Query: 92  KNKQEYQSPKTTTISKNELANLVKLNQENFIEQFKLLSQYLEDPKTFTQILTLLRVSNDF 271
           + +++ Q  KTT +   EL     ++Q ++  + +   ++L+D      I+++    N+F
Sbjct: 154 QKRKKDQQKKTTRMDLKELKMGYNIDQHDYSVRLRAAQKFLQDGDKVKVIVSMKGRENEF 213

Query: 272 ENV---------TEVGKLAFAKLKLFREHQXXXXXXXXXXXXXXXXRDQLNKQRRRLSTE 424
            N+         TE+G+LA  + K FR+                       K+++    E
Sbjct: 214 RNIAIELLRRFQTEIGELATEESKNFRDRNMFIILVPNKEMIRKPQEPPTRKKKKTAENE 273

Query: 425 KHLSLREIT 451
              S  EIT
Sbjct: 274 ASASAAEIT 282

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 787,354,701
Number of extensions: 11659714
Number of successful extensions: 27077
Number of sequences better than 10.0: 12
Number of HSP's gapped: 27067
Number of HSP's successfully gapped: 12
Length of query: 235
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 110
Effective length of database: 646,610,989
Effective search space: 71127208790
Effective search space used: 71127208790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.75  gvh: 0.35  alm: 0.32  top: 0.50  tms: 0.07  mit: 0.23  mip: 0.03
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.15  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: nuclear
	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U13627-1 is nuc
VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0