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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13620-1
Contig ID Contig-U13620-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13620-1 (Contig-U13620-1Q) /CSM_Contig/Contig-U13620-1Q.Seq.d
ATTACAATATCGTTTTTTAAAAATAAAAAAATGAAAATAATTTTAACATT
ATCAATTTTTTTAATTTGTTTTTTACAACTTGGGCAATCAATTATTGATC
CATCCCAAAAAGATGTAATGTCAGATTTATTGTTTAATATGTACGGTTAT
AGTAAGGGTCTAGATCCATGTGATAATTCAGCATATGTTATATGTGATTA
TATCAATTCAACAAGCACCTTTAAAACTGTTAAAGAGTTACACCTAGGTA
CTCCCTTACAAGAATATGTAATCACTCAAGATTTATCCCCACTCCAAAAT
TTAACCTATTTGCAATTAAATTATAATAATATTTATTTAAGTTCTTCTTT
TTTTAATTATGTTAATAAATTTTCTCAACTTTTGAGAATATATTTAGGAT
CCTATAATGAAACAATTCCAGATGATACAATTTTCCCAGCAAGTTTAGAA
TCATTTTTAATTTATAATCCTTCAGCTCCTTTAGGTAGAGCAATTTTTGA
ATCAACTATTAAAAATATATTTATTTACTCTCCTTTAACTGGTTTCAGTT
ATCCAACTTTAATAAATGTCAATCCATATCTTGAATATCTTGCACTTCCA
GTAACTTTCTATTCAGGTTTTCCTTCAAATATATCTCGAGTATTCACAAA
TTTAAATAAATTGGAAATTCGAGTATTTAATGATATGAATGAAAATAATT
ACAAAAACTTC
Gap no gap
Contig length 711
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 4
Number of EST 4
Link to clone list U13620
List of clone(s) 

est1=VHI365F,1,589
est2=VHH739F,45,700
est3=VHM693F,48,701
est4=VHE410F,77,711
Translated Amino Acid sequence 
ITISFFKNKKMKIILTLSIFLICFLQLGQSIIDPSQKDVMSDLLFNMYGYSKGLDPCDNS
AYVICDYINSTSTFKTVKELHLGTPLQEYVITQDLSPLQNLTYLQLNYNNIYLSSSFFNY
VNKFSQLLRIYLGSYNETIPDDTIFPASLESFLIYNPSAPLGRAIFESTIKNIFIYSPLT
GFSYPTLINVNPYLEYLALPVTFYSGFPSNISRVFTNLNKLEIRVFNDMNENNYKNF
Translated Amino Acid sequence (All Frames) 
Frame A:
ITISFFKNKKMKIILTLSIFLICFLQLGQSIIDPSQKDVMSDLLFNMYGYSKGLDPCDNS
AYVICDYINSTSTFKTVKELHLGTPLQEYVITQDLSPLQNLTYLQLNYNNIYLSSSFFNY
VNKFSQLLRIYLGSYNETIPDDTIFPASLESFLIYNPSAPLGRAIFESTIKNIFIYSPLT
GFSYPTLINVNPYLEYLALPVTFYSGFPSNISRVFTNLNKLEIRVFNDMNENNYKNF


Frame B:
lqyrflkikk*k*f*hyqff*fvfynlgnqllihpkkm*cqiyclictvivrv*ihviiq
hmlyviisiqqaplkllksyt*vlpyknm*slkiyphski*picn*iiiifi*vllflim
linflnf*eyi*dpimkqfqmiqfsqqv*nhf*fiilqll*veqflnqllkiylftll*l
vsviql**msihilnilhfq*lsiqvflqiyleysqi*inwkfeylmi*mkiitkt


Frame C:
ynivf*k*knennfniinffnlffttwainy*sipkrcnvrfiv*yvrl**gsrsm**fs
icym*lyqfnkhl*nc*rvtprysltricnhsrfiptpkfnlfaikl**ylfkffff*lc
**ifstfenifril**nnsr*ynfpskfriifnl*sfssfr*snf*iny*kyiyllsfnw
fqlsnfnkcqsis*isctssnflfrfsfkyissihkfk*ignssi**ye*k*lqkl
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13620-1 (Contig-U13620-1Q)
/CSM_Contig/Contig-U13620-1Q.Seq.d
         (711 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13620-1 (Contig-U13620-1Q) /CSM_Contig/Conti...  1221  0.0
Contig-U12382-1 (Contig-U12382-1Q) /CSM_Contig/Conti...   206  2e-53
Contig-U03872-1 (Contig-U03872-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U14815-1 (Contig-U14815-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U11722-1 (Contig-U11722-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U06576-1 (Contig-U06576-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U13982-1 (Contig-U13982-1Q) /CSM_Contig/Conti...    36  0.050
Contig-U11853-1 (Contig-U11853-1Q) /CSM_Contig/Conti...    36  0.050
Contig-U10382-1 (Contig-U10382-1Q) /CSM_Contig/Conti...    36  0.050
Contig-U09800-1 (Contig-U09800-1Q) /CSM_Contig/Conti...    36  0.050

>Contig-U13620-1 (Contig-U13620-1Q) /CSM_Contig/Contig-U13620-1Q.Seq.d
          Length = 711

 Score = 1221 bits (616), Expect = 0.0
 Identities = 630/637 (98%)
 Strand = Plus / Plus

                                                                       
Query: 75  acaacttgggcaatcaattattgatccatcccaaaaagatgtaatgtcagatttattgtt 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  acaacttgggcaatcaattattgatccatcccaaaaagatgtaatgtcagatttattgtt 134

                                                                       
Query: 135 taatatgtacggttatagtaagggtctagatccatgtgataattcagcatatgttatatg 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 taatatgtacggttatagtaagggtctagatccatgtgataattcagcatatgttatatg 194

                                                                       
Query: 195 tgattatatcaattcaacaagcacctttaaaactgttaaagagttacacctaggtactcc 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tgattatatcaattcaacaagcacctttaaaactgttaaagagttacacctaggtactcc 254

                                                                       
Query: 255 cttacaagaatatgtaatcactcaagatttatccccactccaaaatttaacctatttgca 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cttacaagaatatgtaatcactcaagatttatccccactccaaaatttaacctatttgca 314

                                                                       
Query: 315 attaaattataataatatttatttaagttcttcnnnnnnnaattatgttaataaattttc 374
           |||||||||||||||||||||||||||||||||       ||||||||||||||||||||
Sbjct: 315 attaaattataataatatttatttaagttcttctttttttaattatgttaataaattttc 374

                                                                       
Query: 375 tcaacttttgagaatatatttaggatcctataatgaaacaattccagatgatacaatttt 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tcaacttttgagaatatatttaggatcctataatgaaacaattccagatgatacaatttt 434

                                                                       
Query: 435 cccagcaagtttagaatcatttttaatttataatccttcagctcctttaggtagagcaat 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cccagcaagtttagaatcatttttaatttataatccttcagctcctttaggtagagcaat 494

                                                                       
Query: 495 ttttgaatcaactattaaaaatatatttatttactctcctttaactggtttcagttatcc 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttttgaatcaactattaaaaatatatttatttactctcctttaactggtttcagttatcc 554

                                                                       
Query: 555 aactttaataaatgtcaatccatatcttgaatatcttgcacttccagtaactttctattc 614
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aactttaataaatgtcaatccatatcttgaatatcttgcacttccagtaactttctattc 614

                                                                       
Query: 615 aggttttccttcaaatatatctcgagtattcacaaatttaaataaattggaaattcgagt 674
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aggttttccttcaaatatatctcgagtattcacaaatttaaataaattggaaattcgagt 674

                                                
Query: 675 atttaatgatatgaatgaaaataattacaaaaacttc 711
           |||||||||||||||||||||||||||||||||||||
Sbjct: 675 atttaatgatatgaatgaaaataattacaaaaacttc 711


 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 32 tgaaaataattttaacattatcaa 55
          ||||||||||||||||||||||||
Sbjct: 32 tgaaaataattttaacattatcaa 55


 Score = 36.2 bits (18), Expect = 0.050
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                            
Query: 1  attacaatatcgtttttt 18
          ||||||||||||||||||
Sbjct: 1  attacaatatcgtttttt 18


>Contig-U12382-1 (Contig-U12382-1Q) /CSM_Contig/Contig-U12382-1Q.Seq.d
          Length = 2469

 Score =  206 bits (104), Expect = 2e-53
 Identities = 209/244 (85%)
 Strand = Plus / Plus

                                                                       
Query: 411 aacaattccagatgatacaattttcccagcaagtttagaatcatttttaatttataatcc 470
           |||||||||||||||||||||||||||||||| ||| ||| |||||   |||||||| ||
Sbjct: 466 aacaattccagatgatacaattttcccagcaatttttgaaacatttactatttataaacc 525

                                                                       
Query: 471 ttcagctcctttaggtagagcaatttttgaatcaactattaaaaatatatttatttactc 530
           ||||| ||| ||| ||| || ||||||||||||| ||||||||||  ||| | || | ||
Sbjct: 526 ttcagttccattaagtaaagtaatttttgaatcacctattaaaaacttatatgttgattc 585

                                                                       
Query: 531 tcctttaactggtttcagttatccaactttaataaatgtcaatccatatcttgaatatct 590
            ||||||||||||| ||||  |||||||||| ||||||||||||||||||||| | | ||
Sbjct: 586 ccctttaactggttacagtattccaactttagtaaatgtcaatccatatcttggaaacct 645

                                                                       
Query: 591 tgcacttccagtaactttctattcaggttttccttcaaatatatctcgagtattcacaaa 650
           |  |||||||||||||| |||||||||||||||||||||| | |||| || |||| ||||
Sbjct: 646 tcaacttccagtaacttactattcaggttttccttcaaatttgtctcaagcattcccaaa 705

               
Query: 651 ttta 654
           ||||
Sbjct: 706 ttta 709


 Score =  131 bits (66), Expect = 1e-30
 Identities = 191/232 (82%), Gaps = 3/232 (1%)
 Strand = Plus / Plus

                                                                       
Query: 75  acaacttgggcaatcaattattgatccatcccaaaaagatgtaatgtcagatttattgtt 134
           ||||||||| |||||| ||||||||||||| ||||| || || |||||||||||| | ||
Sbjct: 136 acaacttggacaatcagttattgatccatctcaaaatgaggtcatgtcagatttactatt 195

                                                                       
Query: 135 taatatgtacggttatagtaagggtctagatccatgtgataattcagcatatgttatatg 194
           |||| |||||||||||  |||| |||||||||||||| | |||      ||||||   ||
Sbjct: 196 taatttgtacggttatgataagagtctagatccatgtaacaat---aattatgttgagtg 252

                                                                       
Query: 195 tgattatatcaattcaacaagcacctttaaaactgttaaagagttacacctaggtactcc 254
           ||| ||||||||| ||||||| ||| || |||||||||||   ||     ||||| ||||
Sbjct: 253 tgaatatatcaatacaacaagtaccattcaaactgttaaatctttgtctttaggtgctcc 312

                                                               
Query: 255 cttacaagaatatgtaatcactcaagatttatccccactccaaaatttaacc 306
           ||||||  ||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 313 cttacatcaatatgtaatcactcaagatttaactccactccaaaatttaacc 364


 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 678 taatgatatgaatgaaaataattac 702
           ||||||||||||| |||||||||||
Sbjct: 733 taatgatatgaatcaaaataattac 757


>Contig-U03872-1 (Contig-U03872-1Q) /CSM_Contig/Contig-U03872-1Q.Seq.d
          Length = 941

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 313 caattaaattataataatatttattt 338
           ||||||||| ||||||||||||||||
Sbjct: 923 caattaaataataataatatttattt 898


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,520
Number of Sequences: 6905
Number of extensions: 14520
Number of successful extensions: 1802
Number of sequences better than 10.0: 215
length of query: 711
length of database: 5,674,871
effective HSP length: 16
effective length of query: 695
effective length of database: 5,564,391
effective search space: 3867251745
effective search space used: 3867251745
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.13
Homology vs DNA 
Query= Contig-U13620-1 (Contig-U13620-1Q) /CSM_Contig/Contig-U13620-1Q.Seq.d
         (711 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ420353) Dictyostelium discoideum cDNA clone:ddv39d04, 5' ...   700   0.0    2
(BJ425793) Dictyostelium discoideum cDNA clone:ddv56i24, 5' ...   688   0.0    2
(BJ422588) Dictyostelium discoideum cDNA clone:ddv46n09, 5' ...   686   0.0    2
(AB050503) Dictyostelium discoideum GP138D gene for DdFRP1 a...   638   0.0    3
(AB016609) Dictyostelium discoideum gene for gp138, complete...   432   0.0    5
(AF019984) Dictyostelium discoideum FusC (fusC) gene, partia...   638   e-179  1
(BJ422930) Dictyostelium discoideum cDNA clone:ddv47b17, 5' ...   260   e-131  5
(D12884) Dictyostelium discoideum GP138B gene for cell surfa...   141   e-109  6
(BJ419292) Dictyostelium discoideum cDNA clone:ddv35k16, 5' ...   123   e-102  5
(D12883) Dictyostelium discoideum GP138A gene for cell surfa...   125   9e-99  6
(BJ420445) Dictyostelium discoideum cDNA clone:ddv39g10, 5' ...   109   4e-97  5
(BJ420749) Dictyostelium discoideum cDNA clone:ddv40f09, 5' ...   125   4e-97  6
(BJ426510) Dictyostelium discoideum cDNA clone:ddv59c10, 5' ...   125   3e-95  5
(BJ424468) Dictyostelium discoideum cDNA clone:ddv52d14, 5' ...   125   3e-95  5
(BJ427693) Dictyostelium discoideum cDNA clone:ddv63d11, 5' ...   125   3e-95  5
(BJ418364) Dictyostelium discoideum cDNA clone:ddv32c13, 5' ...   117   4e-93  5
(BJ419224) Dictyostelium discoideum cDNA clone:ddv35m10, 5' ...   125   7e-93  5
(BJ423043) Dictyostelium discoideum cDNA clone:ddv47k21, 5' ...   105   6e-82  5
(BJ418782) Dictyostelium discoideum cDNA clone:ddv34a05, 5' ...   105   7e-82  5
(BJ419399) Dictyostelium discoideum cDNA clone:ddv36a06, 5' ...   105   7e-82  5
(BJ419845) Dictyostelium discoideum cDNA clone:ddv37l11, 5' ...   125   1e-80  5
(BJ418836) Dictyostelium discoideum cDNA clone:ddv34n01, 5' ...   105   1e-79  5
(BJ425828) Dictyostelium discoideum cDNA clone:ddv57a07, 5' ...   105   7e-78  5
(BJ424388) Dictyostelium discoideum cDNA clone:ddv52d08, 5' ...   105   1e-76  5
(BJ426467) Dictyostelium discoideum cDNA clone:ddv59h01, 5' ...   105   2e-73  6
(BJ421230) Dictyostelium discoideum cDNA clone:ddv41k03, 5' ...   105   3e-66  5
(BJ423062) Dictyostelium discoideum cDNA clone:ddv47o21, 5' ...   105   1e-64  4
(BJ423881) Dictyostelium discoideum cDNA clone:ddv50o15, 5' ...   100   5e-51  4
(BJ423061) Dictyostelium discoideum cDNA clone:ddv47o20, 5' ...   100   2e-50  4
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co...    38   0.001  6
(AM442045) Vitis vinifera, whole genome shotgun sequence, co...    46   0.005  3
(AC182688) Populus trichocarpa clone Pop1-39N8, complete seq...    40   0.005  5
(AE014836) Plasmodium falciparum 3D7 chromosome 11 section 1...    42   0.007  6
(AC215816) Oryza punctata clone OP__Ba0008C01, *** SEQUENCIN...    48   0.031  3
(AP009010) Bombyx mori genomic DNA, chromosome 9, BAC clone:...    36   0.033  5
(AE001427) Plasmodium falciparum 3D7 chromosome 2 section 64...    34   0.048  5
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    36   0.060  10
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    34   0.080  11
(CZ537752) SRAA-aad15c07.b1 Strongyloides ratti whole genome...    42   0.084  2
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   0.087  10
(AC226174) Pan troglodytes chromosome 7 clone CH251-632H11, ...    36   0.090  8
(AC215818) Oryza punctata clone OP__Ba0042I01, *** SEQUENCIN...    48   0.11   4
(AC216323) Pteropus vampyrus clone CH279-265F24, WORKING DRA...    50   0.11   1
(AC214726) Pteropus vampyrus clone CH279-8E6, WORKING DRAFT ...    50   0.11   1
(AC190088) Felis catus clone RP86-395D14, WORKING DRAFT SEQU...    50   0.11   1
(AC184028) Felis catus clone RP86-486P1, WORKING DRAFT SEQUE...    50   0.11   1
(BH164231) ENTRC65TF Entamoeba histolytica Sheared DNA Entam...    50   0.11   1
(AZ684928) ENTGV82TF Entamoeba histolytica Sheared DNA Entam...    50   0.11   1
(ET704152) CHO_OF432xa07r1.ab1 CHO_OF Nicotiana tabacum geno...    50   0.11   1
(ET704086) CHO_OF432xa07f1.ab1 CHO_OF Nicotiana tabacum geno...    50   0.11   1
(BZ144841) CH230-367P6.TVB CHORI-230 Segment 2 Rattus norveg...    50   0.11   1
(U42835) Caenorhabditis elegans cosmid C04F6, complete seque...    42   0.13   2
(BD452613) Diagnosis of Diseases Associated with tumor suppr...    40   0.14   2
(AX251092) Sequence 60 from Patent WO0168912.                      40   0.14   2
(EI325505) GM_WBc0062J04.f GM_WBc Glycine max genomic clone ...    32   0.16   3
(AE014835) Plasmodium falciparum 3D7 chromosome 10 section 7...    42   0.18   6
(CU234122) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.22   5
(DN734458) CNB75-G09.x1d-t SHGC-CNB Gasterosteus aculeatus c...    34   0.23   3
(AC161481) Mus musculus chromosome 18, clone RP23-336C20, co...    36   0.26   2
(AC102391) Mus musculus chromosome 18, clone RP24-62K22, com...    36   0.26   2
(AC187461) Zea mays chromosome 7 clone CH201-292F1; ZMMBBc02...    36   0.26   2
(AL008633) Human DNA sequence from clone RP3-345B16 on chrom...    48   0.26   5
(AL844509) Plasmodium falciparum chromosome 13.                    38   0.26   9
(AL672146) Mouse DNA sequence from clone RP23-390P18 on chro...    42   0.29   5
(ED782221) GM_WBb0161M19.r GM_WBb Glycine max genomic clone ...    32   0.38   3
(AE001368) Plasmodium falciparum 3D7 chromosome 2 section 5 ...    38   0.40   3
(AL935299) Zebrafish DNA sequence from clone DKEY-38M5.            48   0.45   1
(AC229754) Oryza minuta clone OM__Ba0173L20, *** SEQUENCING ...    48   0.45   1
(AC229747) Oryza minuta clone OM__Ba0208D15, *** SEQUENCING ...    48   0.45   1
(AC214392) Oryza punctata clone OP__Ba0013E03, *** SEQUENCIN...    48   0.45   1
(CZ624118) OM__Ba0162E14.f OM__Ba Oryza minuta genomic clone...    48   0.45   1
(CZ111247) OM__Ba0124K07.r OM__Ba Oryza minuta genomic clone...    48   0.45   1
(CW526249) OP__Ba0024I12.r OP__Ba Oryza punctata genomic clo...    48   0.45   1
(CW523491) OP__Ba0049H05.r OP__Ba Oryza punctata genomic clo...    48   0.45   1
(AL360354) Plasmodium vivax telomeric YAC clone, complete fi...    30   0.46   10
(AM476720) Vitis vinifera contig VV78X021728.5, whole genome...    38   0.47   3
(AC218901) Zea mays chromosome 8 clone CH201-477O19; ZMMBBc0...    40   0.48   3
(CR769782) Zebrafish DNA sequence from clone DKEY-41C6 in li...    40   0.58   5
(BU498097) PfESToab92f08.y1 Plasmodium falciparum 3D7 asexua...    42   0.60   2
(AL844507) Plasmodium falciparum chromosome 8.                     36   0.67   11
(CP000107) Ehrlichia canis str. Jake, complete genome.             34   0.83   15
(AE014309) Homo sapiens chromosome 13q34 schizophrenia regio...    36   0.84   5
(CU833748) A BAC library has been constructed from PN40024 g...    42   0.88   2
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g...    36   0.89   6
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    34   0.89   11
(BD452739) Diagnosis of Diseases Associated with tumor suppr...    36   0.90   4
(AX346275) Sequence 1346 from Patent WO0200928.                    36   0.90   4
(AX251218) Sequence 186 from Patent WO0168912.                     36   0.90   4
(AL359770) Human DNA sequence from clone RP11-286B9 on chrom...    42   0.95   4
(AL035475) Plasmodium falciparum MAL4P2.                           36   1.0    8
(AC098616) Homo sapiens chromosome 3 clone RP11-279I18, comp...    36   1.1    6
(EJ805180) 1093017454777 Global-Ocean-Sampling_GS-30-02-01-1...    36   1.1    2
(CU424446) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   1.1    4
(DU547779) OO__Ba0024B23.f OO__Ba Oryza officinalis genomic ...    34   1.2    3
(AC150690) Bos taurus  BAC CH240-151A24 (Children's Hospital...    38   1.2    5
(CR388055) Zebrafish DNA sequence from clone DKEY-56D12 in l...    46   1.2    4
(AG415493) Mus musculus molossinus DNA, clone:MSMg01-277K11....    32   1.3    3
(AL049183) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    38   1.3    9
(X59280) S.douglasii gene for cytochrome b.                        32   1.3    4
(AX346317) Sequence 1388 from Patent WO0200928.                    40   1.3    2

>(BJ420353) Dictyostelium discoideum cDNA clone:ddv39d04, 5' end,
           single read.
          Length = 635

 Score =  700 bits (353), Expect(2) = 0.0
 Identities = 356/357 (99%)
 Strand = Plus / Plus


Query: 355 aattatgttaataaattttctcaacttttgagaatatatttaggatcctataatgaaaca 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aattatgttaataaattttctcaacttttgagaatatatttaggatcctataatgaaaca 338


Query: 415 attccagatgatacaattttcccagcaagtttagaatcatttttaatttataatccttca 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 attccagatgatacaattttcccagcaagtttagaatcatttttaatttataatccttca 398


Query: 475 gctcctttaggtagagcaatttttgaatcaactattaaaaatatatttatttactctcct 534
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 399 gctcctttaggtagagcaatttttgaatcaactactaaaaatatatttatttactctcct 458


Query: 535 ttaactggtttcagttatccaactttaataaatgtcaatccatatcttgaatatcttgca 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ttaactggtttcagttatccaactttaataaatgtcaatccatatcttgaatatcttgca 518


Query: 595 cttccagtaactttctattcaggttttccttcaaatatatctcgagtattcacaaattta 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cttccagtaactttctattcaggttttccttcaaatatatctcgagtattcacaaattta 578


Query: 655 aataaattggaaattcgagtatttaatgatatgaatgaaaataattacaaaaacttc 711
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aataaattggaaattcgagtatttaatgatatgaatgaaaataattacaaaaacttc 635

 Score =  529 bits (267), Expect(2) = 0.0
 Identities = 270/271 (99%)
 Strand = Plus / Plus


Query: 77  aacttgggcaatcaattattgatccatcccaaaaagatgtaatgtcagatttattgttta 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aacttgggcaatcaattattgatccatcccaaaaagatgtaatgtcagatttattgttta 60


Query: 137 atatgtacggttatagtaagggtctagatccatgtgataattcagcatatgttatatgtg 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atatgtacggttatagtaagggtctagatccatgtgataattcagcatatgttatatgtg 120


Query: 197 attatatcaattcaacaagcacctttaaaactgttaaagagttacacctaggtactccct 256
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attatatcaattcgacaagcacctttaaaactgttaaagagttacacctaggtactccct 180


Query: 257 tacaagaatatgtaatcactcaagatttatccccactccaaaatttaacctatttgcaat 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tacaagaatatgtaatcactcaagatttatccccactccaaaatttaacctatttgcaat 240


Query: 317 taaattataataatatttatttaagttcttc 347
           |||||||||||||||||||||||||||||||
Sbjct: 241 taaattataataatatttatttaagttcttc 271

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 890,596,582
Number of extensions: 58392498
Number of successful extensions: 5625980
Number of sequences better than 10.0: 307
Length of query: 711
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 687
Effective length of database: 97,308,875,965
Effective search space: 66851197787955
Effective search space used: 66851197787955
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 7
Homology vs Protein 
Query= Contig-U13620-1 (Contig-U13620-1Q) /CSM_Contig/Contig-U13620-1Q.Seq.d
         (711 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB016609_1(AB016609|pid:none) Dictyostelium discoideum gene for ...   325   8e-88
AC116984_79(AC116984|pid:none) Dictyostelium discoideum chromoso...    57   6e-07
AC115599_1(AC115599|pid:none) Dictyostelium discoideum chromosom...    51   3e-05
CP001403_714(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14,...    37   0.78
CP000764_1611(CP000764|pid:none) Bacillus cereus subsp. cytotoxi...    36   1.3
CP001399_606(CP001399|pid:none) Sulfolobus islandicus L.S.2.15, ...    35   2.3
AE006641_1796(AE006641|pid:none) Sulfolobus solfataricus P2, com...    35   2.3
(Q62318) RecName: Full=Transcription intermediary factor 1-beta;...    34   3.9
AF230392_1(AF230392|pid:none) Mus musculus tripartite motif prot...    34   3.9
U67303_1(U67303|pid:none) Mus musculus KRAB-A interacting protei...    34   3.9
BC058391_1(BC058391|pid:none) Mus musculus tripartite motif-cont...    34   3.9
(O08629) RecName: Full=Transcription intermediary factor 1-beta;...    34   3.9
CP000686_3922(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    34   3.9
EU363417_1(EU363417|pid:none) Helicobacter pylori strain A3/90 H...    34   3.9
CP001401_877(CP001401|pid:none) Sulfolobus islandicus M.16.27, c...    34   5.1
CP001400_819(CP001400|pid:none) Sulfolobus islandicus M.14.25, c...    34   5.1
CU469464_79(CU469464|pid:none) Candidatus Phytoplasma mali strai...    34   5.1
CP001402_903(CP001402|pid:none) Sulfolobus islandicus M.16.4, co...    34   5.1

>AB016609_1(AB016609|pid:none) Dictyostelium discoideum gene for
           gp138, complete cds.
          Length = 746

 Score =  325 bits (833), Expect = 8e-88
 Identities = 170/227 (74%), Positives = 181/227 (79%)
 Frame = +1

Query: 31  MKIILTLSIFLICFLQLGQSIIDPSQKDVMSDLLFNMYGYSKGLDPCDNSAYVICDYINS 210
           MKIILTLSIFLICFLQLGQS+IDPSQKDVMSDLLFNMYGYS GLDPC N  +VIC  INS
Sbjct: 1   MKIILTLSIFLICFLQLGQSVIDPSQKDVMSDLLFNMYGYSLGLDPCQN-LFVICKNINS 59

Query: 211 TSTFKTVKELHLGTPLQEYVITQDLSPXXXXXXXXXXXXXXXXXXXXXXXVNKFSQLLRI 390
           TSTF+TV  L+LGTP QEYVITQDLSP                       VNKF++L  I
Sbjct: 60  TSTFQTVTNLNLGTPTQEYVITQDLSPLQNLTVFELYSSIYLSSSFFNY-VNKFTKLKEI 118

Query: 391 YLGSYNETIPDDTIFPASLESFLIYNPSAPLGRAIFESTIKNIFIYSPLTGFSYPTLINV 570
           YL S+N TIPDDTIFPASLE F IYNPS PLGRA FES IKNIFI SPL GFS PTLINV
Sbjct: 119 YLQSFNVTIPDDTIFPASLERFTIYNPSVPLGRATFESNIKNIFINSPLIGFSLPTLINV 178

Query: 571 NPYLEYLALPVTFYSGFPSNISRVFTNLNKLEIRVFNDMNENNYKNF 711
           NPYLEYL+LPVTFYSGFPSN+S+VFTNL  L+IRVFNDMNENNYKNF
Sbjct: 179 NPYLEYLSLPVTFYSGFPSNLSQVFTNLLTLQIRVFNDMNENNYKNF 225

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 969,906,198
Number of extensions: 17416684
Number of successful extensions: 35839
Number of sequences better than 10.0: 18
Number of HSP's gapped: 35824
Number of HSP's successfully gapped: 18
Length of query: 237
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 112
Effective length of database: 646,610,989
Effective search space: 72420430768
Effective search space used: 72420430768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.84  gvh: 0.77  alm: 0.25  top: 0.07  tms: 0.07  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 12.0 %: mitochondrial
	 12.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for Contig-U13620-1 is cyt
VS (DIR, S) 0
VH (FL, L) 4
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0