| Contig-U13568-1 |
| Contig ID |
Contig-U13568-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
751 |
| Chromosome number (1..6, M) |
2 |
| Chromosome length |
8467578 |
| Start point |
4175826 |
| End point |
4175075 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
4 |
| Number of EST |
5 |
| Link to clone list |
U13568 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.12.11 |
| Homology vs DNA |
Query= Contig-U13568-1 (Contig-U13568-1Q) /CSM_Contig/Contig-U13568-1Q.Seq.d
(751 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ427174) Dictyostelium discoideum cDNA clone:ddv61e16, 5' ... 793 0.0 2
(BJ446068) Dictyostelium discoideum cDNA clone:ddv61e16, 3' ... 793 0.0 2
(AU267983) Dictyostelium discoideum vegetative cDNA clone:VS... 712 0.0 2
(BJ437684) Dictyostelium discoideum cDNA clone:ddv35e02, 3' ... 728 0.0 2
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 400 0.0 4
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 400 0.0 4
(U66523) Dictyostelium discoideum ORFveg113 mRNA, partial cds. 720 0.0 2
(AU267982) Dictyostelium discoideum vegetative cDNA clone:VS... 728 0.0 2
(AU037992) Dictyostelium discoideum slug cDNA, clone SSH133. 410 e-177 3
(AC010574) Drosophila melanogaster 3L BAC RP98-7L7 (Roswell ... 52 8e-05 2
(AP008216) Oryza sativa (japonica cultivar-group) genomic DN... 50 5e-04 2
(AP008212) Oryza sativa (japonica cultivar-group) genomic DN... 52 0.031 1
(AP003524) Oryza sativa Japonica Group genomic DNA, chromoso... 52 0.031 1
(AK288218) Oryza sativa Japonica Group cDNA, clone: J090011H... 52 0.031 1
(EA690181) Sequence 69060 from patent US 7365185. 52 0.031 1
(EA656288) Sequence 35167 from patent US 7365185. 52 0.031 1
(CQ586212) Sequence 13970 from Patent WO0171042. 52 0.031 1
(CQ586211) Sequence 13969 from Patent WO0171042. 52 0.031 1
(AE014296) Drosophila melanogaster chromosome 3L, complete s... 52 0.031 1
(AC127049) Rattus norvegicus clone CH230-27A14, *** SEQUENCI... 52 0.031 1
(AC019806) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 52 0.031 1
(ET180949) LL04285 piggyBac Transposon Insertion Sites Droso... 52 0.031 1
(BZ041996) llr19d07.b1 B.oleracea002 Brassica oleracea genom... 52 0.031 1
(EV037494) BNSCS2CT_UP_299_F02_25MAY2007_006 Brassica napus ... 52 0.031 1
(ES906452) BNARO5GH_T3_013_G09_30NOV2006_067 Brassica napus ... 52 0.031 1
(BJ344235) Dictyostelium discoideum cDNA clone:dda18i19, 3' ... 52 0.031 1
(AA816935) LD21791.5prime LD Drosophila melanogaster embryo ... 52 0.031 1
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN... 50 0.12 1
(AP005299) Oryza sativa Japonica Group genomic DNA, chromoso... 50 0.12 1
(AC112514) Oryza sativa Japonica Group chromosome 10 clone O... 50 0.12 1
(AC092749) Genomic sequence for Oryza sativa (japonica culti... 50 0.12 1
(EA689350) Sequence 68229 from patent US 7365185. 50 0.12 1
(EA679160) Sequence 58039 from patent US 7365185. 50 0.12 1
(AC007400) Homo sapiens BAC clone RP11-319A7 from 2, complet... 50 0.12 1
(AC023979) Homo sapiens chromosome 2 clone RP11-538P16 map 2... 50 0.12 1
(EI270350) OR__Ba0079P17.r OR__Ba Oryza rufipogon genomic cl... 50 0.12 1
(AG843993) Oryza sativa Indica Group genomic DNA, BAC end se... 50 0.12 1
(DB721057) Solanum lycopersicum cDNA, clone: LEFL2036K22, 5'... 50 0.12 1
(AW617671) EST324082 L. hirsutum trichome, Cornell Universit... 50 0.12 1
(CR352249) Zebrafish DNA sequence from clone DKEY-97O18 in l... 48 0.48 1
(AL732543) Mouse DNA sequence from clone RP23-13D22 on chrom... 48 0.48 1
(AC165089) Mus musculus BAC clone RP23-85H2 from chromosome ... 48 0.48 1
(AC149224) Mus musculus BAC clone RP23-81D11 from chromosome... 48 0.48 1
(AC147642) Mus musculus BAC clone RP23-27D6 from chromosome ... 48 0.48 1
(AC125193) Mus musculus BAC clone RP23-268I12 from chromosom... 48 0.48 1
(AM442672) Vitis vinifera contig VV78X043501.3, whole genome... 48 0.48 1
(AM436712) Vitis vinifera contig VV78X000830.2, whole genome... 48 0.48 1
(AJ416708) Populus deltoides MER locus, genomic DNA, cultiva... 48 0.48 1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 48 0.48 1
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084... 48 0.48 1
(AP000149) Homo sapiens genomic DNA, chromosome 21q22.2, DSC... 48 0.48 1
(AP000008) Homo sapiens genomic DNA of 21q22.2 Down Syndrome... 48 0.48 1
(AC151279) Mus musculus chromosome 17 clone RP24-165A7, *** ... 48 0.48 1
(CU819265) A BAC library has been constructed from PN40024 g... 48 0.48 1
(BH940252) odf76g05.b1 B.oleracea002 Brassica oleracea genom... 48 0.48 1
(BH693983) BOMIZ27TR BO_2_3_KB Brassica oleracea genomic clo... 48 0.48 1
(BF128500) 601810360R1 NIH_MGC_46 Homo sapiens cDNA clone IM... 48 0.48 1
(DD164556) NOVEL COMPOSITIONS AND METHODS FOR CANCER. 40 0.50 2
(AX695776) Sequence 1403 from Patent WO03008583. 40 0.50 2
(AC181279) Strongylocentrotus purpuratus clone R3-4015J17, W... 46 0.81 2
(CU539062) Zebrafish DNA sequence from clone CH73-211L20 in ... 46 1.9 2
(CT583690) Zebrafish DNA sequence from clone CH211-89L23 in ... 46 1.9 1
(CT573211) Zebrafish DNA sequence from clone DKEYP-91C12 in ... 46 1.9 1
(CR387989) Zebrafish DNA sequence from clone DKEY-101P2 in l... 46 1.9 1
(BX511021) Zebrafish DNA sequence from clone DKEY-16P21 in l... 46 1.9 1
(BX276187) Zebrafish DNA sequence from clone DKEY-207F13 in ... 46 1.9 1
(G47958) Z26642_1 Zebrafish AB Danio rerio STS genomic clone... 46 1.9 1
(AL731839) Mouse DNA sequence from clone RP23-76O22 on chrom... 46 1.9 1
(AC154704) Mus musculus BAC clone RP24-349I24 from chromosom... 46 1.9 1
(AC197809) MACACA MULATTA BAC clone CH250-160K4 from chromos... 46 1.9 1
(AP008218) Oryza sativa (japonica cultivar-group) genomic DN... 46 1.9 1
(AP008214) Oryza sativa (japonica cultivar-group) genomic DN... 46 1.9 1
(AP008211) Oryza sativa (japonica cultivar-group) genomic DN... 46 1.9 1
(AP008210) Oryza sativa (japonica cultivar-group) genomic DN... 46 1.9 1
(AP006615) Oryza sativa Japonica Group genomic DNA, chromoso... 46 1.9 1
(AP005933) Oryza sativa Japonica Group genomic DNA, chromoso... 46 1.9 1
(AP004727) Oryza sativa Japonica Group genomic DNA, chromoso... 46 1.9 1
(AP004524) Lotus japonicus genomic DNA, chromosome 5, clone:... 46 1.9 1
(AM478307) Vitis vinifera contig VV78X056408.1, whole genome... 46 1.9 1
(AM447173) Vitis vinifera contig VV78X005159.3, whole genome... 46 1.9 1
(AL731890) Oryza sativa chromosome 12, . BAC OJ1563_B02 of l... 46 1.9 1
(AL662941) Oryza sativa genomic DNA, chromosome 4, BAC clone... 46 1.9 1
(AC137624) Oryza sativa Japonica Group chromosome 5 clone P0... 46 1.9 1
(AC119290) Oryza sativa Japonica Group chromosome 5 clone OS... 46 1.9 1
(AC097446) Oryza sativa Japonica Group chromosome 10 clone O... 46 1.9 1
(EA690840) Sequence 69719 from patent US 7365185. 46 1.9 1
(EA679209) Sequence 58088 from patent US 7365185. 46 1.9 1
(AB221039) Sus scrofa or10k2, or10r2, cd1a1, or10r3, or10k3 ... 46 1.9 1
(AB221038) Sus scrofa cd1b, cd1e, or10t1, or10j1, or10k1, or... 46 1.9 1
(AL034557) Plasmodium falciparum MAL4P1. 46 1.9 1
(AF030690) Plasmodium falciparum strain HB3 CG9 (cg9) and CG... 46 1.9 1
(AC113145) Homo sapiens chromosome 8, clone RP11-109P6, comp... 46 1.9 1
(AC108472) Homo sapiens BAC clone RP11-626E13 from 4, comple... 46 1.9 1
(AC087713) Homo sapiens chromosome 8, clone RP11-731D15, com... 46 1.9 1
(AC161960) Bos taurus clone CH240-109G7, WORKING DRAFT SEQUE... 46 1.9 1
(AC152916) Zea mays chromosome 2 clone Z377J20 map 2S, *** S... 46 1.9 1
(AC152602) Bos taurus clone CH240-7B8, WORKING DRAFT SEQUENC... 46 1.9 1
(AC146997) Arbacia punctulata clone BAP-144G2, WORKING DRAFT... 46 1.9 1
(AC131378) Strongylocentrotus purpuratus clone Sp117A3, *** ... 46 1.9 1
(AC120522) Canis familiaris clone RP81-417N7, WORKING DRAFT ... 46 1.9 1
>(BJ427174) Dictyostelium discoideum cDNA clone:ddv61e16, 5' end,
single read.
Length = 617
Score = 793 bits (400), Expect(2) = 0.0
Identities = 400/400 (100%)
Strand = Plus / Plus
Query: 1 aaattctaataatatataaataaataaaatgttcttcaaatctgtcgctgctttaatggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaattctaataatatataaataaataaaatgttcttcaaatctgtcgctgctttaatggc 60
Query: 61 tgttgccgttgccatcgcaaatggtcaagccttatcatgttcacaaatgcaatcattagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgttgccgttgccatcgcaaatggtcaagccttatcatgttcacaaatgcaatcattagc 120
Query: 121 aggtcaatacttttcaggtagcaccgccactaatatgatttgtatcagttattatgaatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aggtcaatacttttcaggtagcaccgccactaatatgatttgtatcagttattatgaatc 180
Query: 181 aagctggaatccacaagcttataatccatcaagtgcttcaggtttatggcaaatcttaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagctggaatccacaagcttataatccatcaagtgcttcaggtttatggcaaatcttaac 240
Query: 241 tgaacattgcggtgaattatgtactgcttgttcaaccccaagtgatttattcaacccaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgaacattgcggtgaattatgtactgcttgttcaaccccaagtgatttattcaacccaga 300
Query: 301 tatcaatgcacaatgtgctcttgctgtcttaaatgctcaaggttatgatgcttggactac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tatcaatgcacaatgtgctcttgctgtcttaaatgctcaaggttatgatgcttggactac 360
Query: 361 ttggagtaatggtgattgtaatggttggtcacaatgtggt 400
||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttggagtaatggtgattgtaatggttggtcacaatgtggt 400
Score = 127 bits (64), Expect(2) = 0.0
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 554 ggcagtggttcatcatcaggcagtggtagctcatcaggtagtggaagtggaagtggtagt 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ggcagtggttcatcatcaggcagtggtagctcatcaggtagtggaagtggaagtggtagt 613
Query: 614 ggtt 617
||||
Sbjct: 614 ggtt 617
Score = 42.1 bits (21), Expect(3) = 8e-07
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 559 tggttcatcatcaggcagtggtagc 583
||||||||||||||| |||||||||
Sbjct: 517 tggttcatcatcaggtagtggtagc 541
Score = 32.2 bits (16), Expect(3) = 8e-07
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 578 ggtagctcatcaggtagtgg 597
|||||||||||||| |||||
Sbjct: 542 ggtagctcatcaggcagtgg 561
Score = 28.2 bits (14), Expect(3) = 8e-07
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 593 agtggaagtggaagtggt 610
||||||||||| ||||||
Sbjct: 599 agtggaagtggtagtggt 616
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 502,697,882
Number of extensions: 35282897
Number of successful extensions: 5772106
Number of sequences better than 10.0: 581
Length of query: 751
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 727
Effective length of database: 97,308,875,965
Effective search space: 70743552826555
Effective search space used: 70743552826555
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7. 7 |
| Homology vs Protein |
Query= Contig-U13568-1 (Contig-U13568-1Q) /CSM_Contig/Contig-U13568-1Q.Seq.d
(751 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U66523_1(U66523|pid:none) Dictyostelium discoideum ORFveg113 mRN... 234 2e-60
AY119059_1(AY119059|pid:none) Drosophila melanogaster LP07339 fu... 45 0.002
(P37159) RecName: Full=Lysozyme E; EC=3.2.1.17; AltName... 45 0.002
(P83971) RecName: Full=Lysozyme A/C; EC=3.2.1.17; AltNa... 45 0.002
(P16973) RecName: Full=Lysozyme C; EC=3.2.1.17; AltName... 45 0.002
(P83972) RecName: Full=Lysozyme D; EC=3.2.1.17; AltName... 45 0.002
S41574(S41574;S32643;S32620) lysozyme (EC 3.2.1.17) B precursor ... 45 0.002
JC2506(JC2506)colonic lysozyme 2 - rabbit 45 0.002
S41577(S41577;S32634) lysozyme (EC 3.2.1.17) E precursor - fruit... 45 0.002
(Q96KX0) RecName: Full=Lysozyme-like protein 4; Flags: Precursor... 45 0.003
EF535848_1(EF535848|pid:none) Bubalus bubalis lysozyme mRNA, com... 44 0.004
DQ480755_1(DQ480755|pid:none) Bubalus bubalis lysozyme (LYZ) mRN... 44 0.004
(Q06284) RecName: Full=Lysozyme C-3; EC=3.2.1.17; AltNa... 44 0.005
BT081955_1(BT081955|pid:none) Rana catesbeiana clone rcat-evr-52... 44 0.005
M26241_1(M26241|pid:none) Bovine lysozyme c isozyme 2a mRNA, com... 44 0.005
(Q06283) RecName: Full=Lysozyme C-2; EC=3.2.1.17; AltNa... 44 0.005
M26244_1(M26244|pid:none) Bovine lysozyme c isozyme 2c mRNA, com... 44 0.005
(Q659U1) RecName: Full=Lysozyme C; EC=3.2.1.17; AltName... 43 0.009
B49315(B49315)lysozyme (EC 3.2.1.17) 14d, tracheal - bovine 43 0.009
(Q06285) RecName: Full=Lysozyme C-1; EC=3.2.1.17; AltNa... 43 0.012
E35558(E35558) lysozyme (EC 3.2.1.17) 2 - sheep &M32495_1(M3249... 42 0.027
(Q659U0) RecName: Full=Lysozyme C; EC=3.2.1.17; AltName... 42 0.027
(P37714) RecName: Full=Lysozyme C-2; EC=3.2.1.17; AltNa... 41 0.046
CP000826_671(CP000826|pid:none) Serratia proteamaculans 568, com... 41 0.046
(P17607) RecName: Full=Lysozyme C-1; EC=3.2.1.17; AltNa... 40 0.061
CP000249_2950(CP000249|pid:none) Frankia sp. CcI3, complete geno... 40 0.061
A55241(A55241)lysozyme (EC 3.2.1.17) precursor, stomach - hoatzin 40 0.061
AY257549_1(AY257549|pid:none) Macrobrachium rosenbergii lysozyme... 40 0.061
F35558(F35558) lysozyme (EC 3.2.1.17) 3 - sheep &M32497_1(M3249... 40 0.079
(P37161) RecName: Full=Lysozyme X; EC=3.2.1.17; AltName... 40 0.10
AM412876_1(AM412876|pid:none) Drosophila simulans CG9120 gene fo... 40 0.10
(P81708) RecName: Full=Lysozyme C, milk isozyme; EC=3.2... 40 0.10
BT032778_1(BT032778|pid:none) Drosophila melanogaster IP21038 fu... 39 0.13
AM412869_1(AM412869|pid:none) Drosophila melanogaster CG9120 gen... 39 0.13
AM412873_1(AM412873|pid:none) Drosophila simulans CG9120 gene fo... 39 0.13
(P37160) RecName: Full=Lysozyme S; EC=3.2.1.17; AltName... 39 0.13
M26240_1(M26240|pid:none) Bovine lysozyme c isozyme 2d mRNA, com... 39 0.13
BT047934_1(BT047934|pid:none) Salmo salar clone ssal-eve-540-215... 39 0.18
AB080238_1(AB080238|pid:none) Marsupenaeus japonicus lys-pj mRNA... 39 0.18
EU835654_1(EU835654|pid:none) Ctenopharyngodon idella C-type lys... 39 0.18
FJ542375_1(FJ542375|pid:none) Gallus gallus clone LYZ-3 lysozyme... 39 0.23
(P81646) RecName: Full=Alpha-lactalbumin; AltName: Full=Lactose ... 39 0.23
(P80190) RecName: Full=Lysozyme C, kidney isozyme; EC=3... 39 0.23
(P11941) RecName: Full=Lysozyme C II; EC=3.2.1.17; AltN... 38 0.30
NRL(1LMN) Lysozyme (EC 3.2.1.17) - rainbow trout &PDBN(1BB6) &P... 38 0.39
CP000653_550(CP000653|pid:none) Enterobacter sp. 638, complete g... 38 0.39
AE013599_2344(AE013599|pid:none) Drosophila melanogaster chromos... 38 0.39
EU016395_1(EU016395|pid:none) Trichoplusia ni clone L507 lysozym... 38 0.39
AY661543_1(AY661543|pid:none) Fenneropenaeus chinensis lysozyme ... 37 0.51
CP000472_32(CP000472|pid:none) Shewanella piezotolerans WP3, com... 37 0.51
DQ888712_1(DQ888712|pid:none) Triatoma infestans lysozyme 2 (Lys... 37 0.51
DQ855425_1(DQ855425|pid:none) Bos indicus x Bos taurus milk lyso... 37 0.51
AY344588_1(AY344588|pid:none) Musca domestica Lys-rich lysozyme ... 37 0.51
AB027305_1(AB027305|pid:none) Cyprinus carpio mRNA for lysozyme ... 37 0.51
EU591712_1(EU591712|pid:none) Fenneropenaeus merguiensis lysozym... 37 0.67
EU622903_1(EU622903|pid:none) Anopheles dirus A lysozyme (Lysc1)... 37 0.67
EU561662_1(EU561662|pid:none) Litopenaeus stylirostris c-type ly... 37 0.67
(Q17005) RecName: Full=Lysozyme c-1; EC=3.2.1.17; AltNa... 37 0.87
AY693973_1(AY693973|pid:none) Aedes aegypti lysozyme mRNA, compl... 37 0.87
CP000089_1311(CP000089|pid:none) Dechloromonas aromatica RCB, co... 37 0.87
DQ832171_1(DQ832171|pid:none) Felis catus lysozyme mRNA, partial... 37 0.87
BT023686_1(BT023686|pid:none) Drosophila melanogaster IP04203 fu... 37 0.87
(P11376) RecName: Full=Lysozyme C, milk isozyme; EC=3.2... 37 0.87
AF425673_1(AF425673|pid:none) Litopenaeus vannamei lysozyme mRNA... 37 0.87
(P48816) RecName: Full=Lysozyme; EC=3.2.1.17; AltName: ... 37 0.87
CP000031_1119(CP000031|pid:none) Ruegeria pomeroyi DSS-3, comple... 37 0.87
AF425264_1(AF425264|pid:none) Ornithodoros moubata lysozyme prec... 37 0.87
(P29615) RecName: Full=Lysozyme P; EC=3.2.1.17; AltName... 36 1.1
DQ054536_23(DQ054536|pid:none) Lactococcus phage P008, complete ... 36 1.1
AY169675_1(AY169675|pid:none) Penaeus semisulcatus lysozyme mRNA... 36 1.1
DQ480754_1(DQ480754|pid:none) Bubalus bubalis lysozyme (LYZ) mRN... 36 1.1
LZBA(A00850)lysozyme (EC 3.2.1.17) c - baboon (tentative sequence) 36 1.1
AY257550_1(AY257550|pid:none) Macrobrachium nipponense lysozyme ... 36 1.1
BT029420_1(BT029420|pid:none) Drosophila melanogaster IP02746 fu... 36 1.1
DQ227763_24(DQ227763|pid:none) Lactococcus phage 712, complete g... 36 1.1
DQ307162_1(DQ307162|pid:none) Glossina morsitans morsitans clone... 36 1.1
AB104688_1(AB104688|pid:none) Anopheles stephensi mRNA for lysoz... 36 1.5
(P79806) RecName: Full=Lysozyme C; EC=3.2.1.17; AltName... 36 1.5
AB048258_1(AB048258|pid:none) Samia cynthia ricini lys mRNA for ... 36 1.5
CP000820_2471(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 36 1.5
EU836689_1(EU836689|pid:none) Oreochromis aureus c-type lysozyme... 36 1.5
AB355630_1(AB355630|pid:none) Scophthalmus rhombus mRNA for c-ty... 36 1.5
CP000964_4673(CP000964|pid:none) Klebsiella pneumoniae 342, comp... 36 1.5
(P79687) RecName: Full=Lysozyme C; EC=3.2.1.17; AltName... 36 1.5
V00428_1(V00428|pid:none) Gallus gallus mRNA coding for lysozyme. 36 1.5
CP000269_1208(CP000269|pid:none) Janthinobacterium sp. Marseille... 35 1.9
CU207211_2192(CU207211|pid:none) Herminiimonas arsenicoxydans ch... 35 1.9
BX571860_229(BX571860|pid:none) Photorhabdus luminescens subsp. ... 35 1.9
AF003945_1(AF003945|pid:none) Anopheles darlingi lysozyme mRNA, ... 35 1.9
CP000647_4766(CP000647|pid:none) Klebsiella pneumoniae subsp. pn... 35 1.9
(P67979) RecName: Full=Lysozyme C; EC=3.2.1.17; AltName... 35 2.5
CP000490_350(CP000490|pid:none) Paracoccus denitrificans PD1222 ... 35 2.5
CP000386_319(CP000386|pid:none) Rubrobacter xylanophilus DSM 994... 35 2.5
(P67977) RecName: Full=Lysozyme C; EC=3.2.1.17; AltName... 35 2.5
(P79811) RecName: Full=Lysozyme C; EC=3.2.1.17; AltName... 35 2.5
AE005174_5338(AE005174|pid:none) Escherichia coli O157:H7 EDL933... 35 3.3
CP000038_4213(CP000038|pid:none) Shigella sonnei Ss046, complete... 35 3.3
CP000800_4744(CP000800|pid:none) Escherichia coli E24377A, compl... 35 3.3
(A6QK59) RecName: Full=Probable transglycosylase isaA; ... 35 3.3
CU928162_5112(CU928162|pid:none) Escherichia coli ED1a chromosom... 35 3.3
CU928158_4309(CU928158|pid:none) Escherichia fergusonii ATCC 354... 35 3.3
CP001281_2228(CP001281|pid:none) Thauera sp. MZ1T, complete geno... 35 3.3
CP000034_4268(CP000034|pid:none) Shigella dysenteriae Sd197, com... 35 3.3
AE005674_4426(AE005674|pid:none) Shigella flexneri 2a str. 301, ... 35 3.3
AE014075_5368(AE014075|pid:none) Escherichia coli CFT073, comple... 35 3.3
CP000946_3587(CP000946|pid:none) Escherichia coli ATCC 8739, com... 35 3.3
CP000266_4106(CP000266|pid:none) Shigella flexneri 5 str. 8401, ... 35 3.3
(P0AGC3) RecName: Full=Soluble lytic murein transglycosylase; ... 35 3.3
U39644_2(U39644|pid:none) Caenorhabditis elegans cosmid T10E10, ... 35 3.3
AJ606769_1(AJ606769|pid:none) Mesobuthus gibbosus partial lys-C ... 34 4.3
AI0055(AI0055) probable soluble lytic murein transglycosylase (E... 34 4.3
DQ007318_1(DQ007318|pid:none) Anopheles gambiae lysozyme c-4 mRN... 34 4.3
CP000950_3566(CP000950|pid:none) Yersinia pseudotuberculosis YPI... 34 4.3
FJ804424_1(FJ804424|pid:none) Perca flavescens C-type lysozyme m... 34 4.3
AJ606729_1(AJ606729|pid:none) Mesobuthus eupeus partial lys-C ge... 34 4.3
A31572_1(A31572|pid:none) Synthetic human lysozyme gene. 34 4.3
CP000901_747(CP000901|pid:none) Yersinia pestis Angola, complete... 34 4.3
(P79180) RecName: Full=Lysozyme C; EC=3.2.1.17; AltName... 34 4.3
CP001600_586(CP001600|pid:none) Edwardsiella ictaluri 93-146, co... 34 4.3
CT573213_4820(CT573213|pid:none) Frankia alni str. ACN14A chromo... 34 5.7
AJ606746_1(AJ606746|pid:none) Mesobuthus gibbosus partial lys-C ... 34 5.7
AJ606731_1(AJ606731|pid:none) Mesobuthus cyprius partial lys-C g... 34 5.7
FM204884_1937(FM204884|pid:none) Streptococcus equi subsp. zooep... 34 5.7
CP000302_2008(CP000302|pid:none) Shewanella denitrificans OS217,... 34 5.7
CP000884_4880(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 34 5.7
NRL(1LHL) lysozyme (EC 3.2.1.17) mutant (A47P) - human 34 5.7
FM204883_2113(FM204883|pid:none) Streptococcus equi subsp. equi ... 34 5.7
AJ606738_1(AJ606738|pid:none) Mesobuthus gibbosus partial lys-C ... 34 5.7
CP001129_1868(CP001129|pid:none) Streptococcus equi subsp. zooep... 34 5.7
CP000542_580(CP000542|pid:none) Verminephrobacter eiseniae EF01-... 34 5.7
CP000539_1674(CP000539|pid:none) Acidovorax sp. JS42, complete g... 34 5.7
(Q6GDN1) RecName: Full=Probable transglycosylase isaA; ... 34 5.7
EF203085_1(EF203085|pid:none) Labeo rohita lysozyme C mRNA, part... 34 5.7
AJ606790_1(AJ606790|pid:none) Mesobuthus gibbosus partial lys-C ... 34 5.7
CP001635_2301(CP001635|pid:none) Variovorax paradoxus S110 chrom... 33 7.4
AJ606736_1(AJ606736|pid:none) Mesobuthus cyprius partial lys-C g... 33 7.4
AM902716_630(AM902716|pid:none) Bordetella petrii strain DSM 128... 33 7.4
BX842656_1(BX842656|pid:none) Bdellovibrio bacteriovorus complet... 33 7.4
AL939122_95(AL939122|pid:none) Streptomyces coelicolor A3(2) com... 33 7.4
DQ489740_43(DQ489740|pid:none) Leuconostoc citreum KM20 plasmid ... 33 7.4
(P85045) RecName: Full=Lysozyme C; EC=3.2.1.17; AltName... 33 9.7
AE017143_1187(AE017143|pid:none) Haemophilus ducreyi strain 3500... 33 9.7
AJ606750_1(AJ606750|pid:none) Mesobuthus gibbosus partial lys-C ... 33 9.7
AJ606782_1(AJ606782|pid:none) Mesobuthus gibbosus partial lys-C ... 33 9.7
AJ606739_1(AJ606739|pid:none) Mesobuthus gibbosus partial lys-C ... 33 9.7
AJ606741_1(AJ606741|pid:none) Mesobuthus gibbosus partial lys-C ... 33 9.7
AY359018_1(AY359018|pid:none) Homo sapiens clone DNA73746 TKAL75... 33 9.7
BX640434_294(BX640434|pid:none) Bordetella parapertussis strain ... 33 9.7
CP000387_2251(CP000387|pid:none) Streptococcus sanguinis SK36, c... 33 9.7
CP000544_296(CP000544|pid:none) Halorhodospira halophila SL1, co... 33 9.7
EU747734_1(EU747734|pid:none) Psetta maxima lysozyme gene, compl... 33 9.7
AJ606778_1(AJ606778|pid:none) Mesobuthus gibbosus partial lys-C ... 33 9.7
CP000880_2891(CP000880|pid:none) Salmonella enterica subsp. ariz... 33 9.7
>U66523_1(U66523|pid:none) Dictyostelium discoideum ORFveg113 mRNA,
partial cds.
Length = 199
Score = 234 bits (597), Expect = 2e-60
Identities = 106/106 (100%), Positives = 106/106 (100%)
Frame = +2
Query: 80 NGQALSCSQMQSLAGQYFSGSTATNMICISYYESSWNPQAYNPSSASGLWQILTEHCGEL 259
NGQALSCSQMQSLAGQYFSGSTATNMICISYYESSWNPQAYNPSSASGLWQILTEHCGEL
Sbjct: 15 NGQALSCSQMQSLAGQYFSGSTATNMICISYYESSWNPQAYNPSSASGLWQILTEHCGEL 74
Query: 260 CTACSTPSDLFNPDINAQCALAVLNAQGYDAWTTWSNGDCNGWSQC 397
CTACSTPSDLFNPDINAQCALAVLNAQGYDAWTTWSNGDCNGWSQC
Sbjct: 75 CTACSTPSDLFNPDINAQCALAVLNAQGYDAWTTWSNGDCNGWSQC 120
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 693,141,868
Number of extensions: 11368922
Number of successful extensions: 27012
Number of sequences better than 10.0: 153
Number of HSP's gapped: 26966
Number of HSP's successfully gapped: 153
Length of query: 250
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 125
Effective length of database: 646,610,989
Effective search space: 80826373625
Effective search space used: 80826373625
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
|
| PSORT |
|
| VS (DIR, S) |
1 |
| VH (FL, L) |
2 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
1 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |