Contig-U13538-1 |
Contig ID |
Contig-U13538-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
831 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
1728405 |
End point |
1728978 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
48 |
Number of EST |
66 |
Link to clone list |
U13538 |
List of clone(s) |
est1=VHA679Z,1,734 est2=SLE529Z,167,736 est3=VFI358F,201,710 est4=VFI358Z,201,664 est5=VFI410F,201,750 est6=VFI410Z,201,739 est7=VSC504E,201,764 est8=VSD619F,214,750 est9=VSD619Z,214,731 est10=SLF538F,216,515 est11=VSH112F,217,750 est12=SLE529F,219,736 est13=VSD647F,219,750 est14=VSA144E,220,742 est15=VSE584E,220,742 est16=VSF788Z,220,726 est17=VSJ477F,220,462 est18=VSD592Z,221,731 est19=VSE706E,221,742 est20=VSI124Z,221,727 est21=VSB791Z,222,758 est22=VSI124F,222,750 est23=VSD601F,225,750 est24=VSD601Z,225,737 est25=VSH112Z,225,731 est26=SSK412E,226,736 est27=VSD617F,226,750 est28=VSB362E,228,742 est29=VSD476F,228,750 est30=VSD476Z,228,683 est31=SLA842E,231,764 est32=VSD460F,231,750 est33=VSD460Z,231,729 est34=VSD692Z,231,729 est35=VSG304F,231,750 est36=VSG304Z,231,715 est37=VSI572F,231,750 est38=VSI572Z,231,729 est39=VSD382Z,232,723 est40=VSF788F,232,750 est41=SLK264F,233,602 est42=VSD382F,233,750 est43=VSD617Z,234,729 est44=VSF257F,234,750 est45=VHH537F,236,763 est46=VSG523F,236,769 est47=VSC609E,238,761 est48=SLJ593F,244,555 est49=VHE222Z,256,619 est50=SLA126E,260,736 est51=SSE638E,277,734 est52=SLC480Z,282,736 est53=VSE512E,288,743 est54=VSC815Z,290,719 est55=VSA788Z,303,783 est56=SLK747Z,323,736 est57=VSC770Z,362,807 est58=SLJ235Z,456,735 est59=SLI151Z,458,736 est60=SLJ593Z,468,762 est61=VSF257Z,478,736 est62=SLF866E,526,830 est63=VSG215F,533,750 est64=VSG215Z,533,729 est65=VSE539Z,578,760 est66=SLF538Z,584,735
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.11 |
Homology vs DNA |
Query= Contig-U13538-1 (Contig-U13538-1Q) /CSM_Contig/Contig-U13538-1Q.Seq.d (831 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ437012) Dictyostelium discoideum cDNA clone:ddv32m20, 3' ... 1275 0.0 3 (BJ444090) Dictyostelium discoideum cDNA clone:ddv55o03, 3' ... 852 0.0 4 (AU262609) Dictyostelium discoideum vegetative cDNA clone:VS... 876 0.0 2 (BJ413807) Dictyostelium discoideum cDNA clone:ddv17d04, 5' ... 876 0.0 2 (AU034809) Dictyostelium discoideum slug cDNA, clone SLE529. 866 0.0 2 (AU261309) Dictyostelium discoideum vegetative cDNA clone:VS... 862 0.0 2 (AU263309) Dictyostelium discoideum vegetative cDNA clone:VS... 860 0.0 2 (AU268187) Dictyostelium discoideum vegetative cDNA clone:VS... 858 0.0 2 (AU061518) Dictyostelium discoideum slug cDNA, clone SLE529. 858 0.0 2 (AU263218) Dictyostelium discoideum vegetative cDNA clone:VS... 854 0.0 2 (AU262251) Dictyostelium discoideum vegetative cDNA clone:VS... 850 0.0 2 (AU264364) Dictyostelium discoideum vegetative cDNA clone:VS... 850 0.0 2 (C91539) Dictyostelium discoideum slug cDNA, clone SSK412. 850 0.0 2 (AU268188) Dictyostelium discoideum vegetative cDNA clone:VS... 860 0.0 2 (AU264097) Dictyostelium discoideum vegetative cDNA clone:VS... 846 0.0 2 (AU261976) Dictyostelium discoideum vegetative cDNA clone:VS... 846 0.0 2 (AU033451) Dictyostelium discoideum slug cDNA, clone SLA842. 841 0.0 2 (AU264069) Dictyostelium discoideum vegetative cDNA clone:VS... 841 0.0 2 (AU266275) Dictyostelium discoideum vegetative cDNA clone:VS... 841 0.0 2 (AU265795) Dictyostelium discoideum vegetative cDNA clone:VS... 839 0.0 2 (AU264284) Dictyostelium discoideum vegetative cDNA clone:VS... 852 0.0 3 (AU266927) Dictyostelium discoideum vegetative cDNA clone:VS... 837 0.0 2 (BJ431918) Dictyostelium discoideum cDNA clone:ddv17d04, 3' ... 876 0.0 3 (AU264279) Dictyostelium discoideum vegetative cDNA clone:VS... 860 0.0 3 (AU264947) Dictyostelium discoideum vegetative cDNA clone:VS... 835 0.0 2 (AU264318) Dictyostelium discoideum vegetative cDNA clone:VS... 729 0.0 3 (AU264285) Dictyostelium discoideum vegetative cDNA clone:VS... 852 0.0 3 (AU266593) Dictyostelium discoideum vegetative cDNA clone:VS... 831 0.0 2 (AU266928) Dictyostelium discoideum vegetative cDNA clone:VS... 852 0.0 3 (AU262668) Dictyostelium discoideum vegetative cDNA clone:VS... 827 0.0 2 (BJ413958) Dictyostelium discoideum cDNA clone:ddv17d15, 5' ... 876 0.0 2 (AU264319) Dictyostelium discoideum vegetative cDNA clone:VS... 850 0.0 3 (AU268910) Dictyostelium discoideum vegetative cDNA clone:VS... 720 0.0 3 (AU263938) Dictyostelium discoideum vegetative cDNA clone:VS... 823 0.0 2 (AU264314) Dictyostelium discoideum vegetative cDNA clone:VS... 714 0.0 3 (BJ422566) Dictyostelium discoideum cDNA clone:ddv46i09, 5' ... 813 0.0 2 (AU268911) Dictyostelium discoideum vegetative cDNA clone:VS... 841 0.0 2 (AU264070) Dictyostelium discoideum vegetative cDNA clone:VS... 841 0.0 2 (AU266276) Dictyostelium discoideum vegetative cDNA clone:VS... 841 0.0 2 (AU265796) Dictyostelium discoideum vegetative cDNA clone:VS... 759 0.0 3 (AU263939) Dictyostelium discoideum vegetative cDNA clone:VS... 831 0.0 3 (AU264420) Dictyostelium discoideum vegetative cDNA clone:VS... 841 0.0 2 (AU264315) Dictyostelium discoideum vegetative cDNA clone:VS... 835 0.0 2 (C25502) Dictyostelium discoideum slug cDNA, clone SLA126. 783 0.0 2 (BJ432072) Dictyostelium discoideum cDNA clone:ddv17d15, 3' ... 870 0.0 1 (C92360) Dictyostelium discoideum slug cDNA, clone SSE638. 749 0.0 2 (AU034562) Dictyostelium discoideum slug cDNA, clone SLC480. 739 0.0 2 (AU263158) Dictyostelium discoideum vegetative cDNA clone:VS... 729 0.0 2 (AU264098) Dictyostelium discoideum vegetative cDNA clone:VS... 833 0.0 1 (AU054120) Dictyostelium discoideum slug cDNA, clone SLK747. 658 0.0 2 (AU060520) Dictyostelium discoideum slug cDNA, clone SLK264. 733 0.0 1 (AU262810) Dictyostelium discoideum vegetative cDNA clone:VS... 664 0.0 2 (AU261740) Dictyostelium discoideum vegetative cDNA clone:VS... 630 0.0 2 (AU262781) Dictyostelium discoideum vegetative cDNA clone:VS... 521 e-169 2 (BJ439006) Dictyostelium discoideum cDNA clone:ddv39k06, 3' ... 593 e-165 1 (AU061715) Dictyostelium discoideum slug cDNA, clone SLF538. 575 e-159 1 (AU053614) Dictyostelium discoideum slug cDNA, clone SLJ235. 394 e-138 2 (AU053208) Dictyostelium discoideum slug cDNA, clone SLI151. 391 e-136 2 (AU269982) Dictyostelium discoideum vegetative cDNA clone:VS... 480 e-131 1 (AU053741) Dictyostelium discoideum slug cDNA, clone SLJ593. 371 e-130 2 (AU264948) Dictyostelium discoideum vegetative cDNA clone:VS... 353 e-124 2 (AU060394) Dictyostelium discoideum slug cDNA, clone SLJ593. 404 e-108 1 (AY171066) Dictyostelium discoideum extrachromosomal palindr... 303 e-107 2 (BJ441844) Dictyostelium discoideum cDNA clone:ddv48e04, 3' ... 303 e-107 2 (BJ444668) Dictyostelium discoideum cDNA clone:ddv57i02, 3' ... 303 e-107 2 (AU034938) Dictyostelium discoideum slug cDNA, clone SLE369. 303 e-107 2 (AU052437) Dictyostelium discoideum slug cDNA, clone SLD317. 303 e-107 2 (AU275070) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 299 e-106 2 (AU271792) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 299 e-106 2 (BJ435954) Dictyostelium discoideum cDNA clone:ddv29j05, 3' ... 291 e-104 2 (BJ445714) Dictyostelium discoideum cDNA clone:ddv60l11, 3' ... 289 e-103 2 (BJ443023) Dictyostelium discoideum cDNA clone:ddv51m16, 3' ... 289 e-103 2 (BJ438901) Dictyostelium discoideum cDNA clone:ddv38g23, 3' ... 289 e-103 2 (BJ380833) Dictyostelium discoideum cDNA clone:ddc39a15, 3' ... 289 e-103 2 (BJ403693) Dictyostelium discoideum cDNA clone:dds25p20, 3' ... 289 e-103 2 (BJ442198) Dictyostelium discoideum cDNA clone:ddv49j06, 3' ... 289 e-103 2 (BJ438803) Dictyostelium discoideum cDNA clone:ddv38c18, 3' ... 289 e-103 2 (BJ352966) Dictyostelium discoideum cDNA clone:dda48c18, 3' ... 289 e-103 2 (BJ382219) Dictyostelium discoideum cDNA clone:ddc44c05, 3' ... 289 e-103 2 (BJ432234) Dictyostelium discoideum cDNA clone:ddv18h04, 3' ... 289 e-103 2 (BJ446763) Dictyostelium discoideum cDNA clone:ddv63c23, 3' ... 289 e-103 2 (BJ436703) Dictyostelium discoideum cDNA clone:ddv32a06, 3' ... 289 e-103 2 (BJ386398) Dictyostelium discoideum cDNA clone:ddc58i03, 3' ... 289 e-103 2 (BJ444600) Dictyostelium discoideum cDNA clone:ddv56k22, 3' ... 289 e-103 2 (BJ443837) Dictyostelium discoideum cDNA clone:ddv54e09, 3' ... 289 e-103 2 (BJ379207) Dictyostelium discoideum cDNA clone:ddc34i06, 3' ... 289 e-103 2 (BJ399314) Dictyostelium discoideum cDNA clone:dds5l09, 3' e... 289 e-103 2 (BJ443401) Dictyostelium discoideum cDNA clone:ddv52f20, 3' ... 289 e-103 2 (BJ405741) Dictyostelium discoideum cDNA clone:dds32f22, 3' ... 289 e-103 2 (BJ403213) Dictyostelium discoideum cDNA clone:dds24m08, 3' ... 289 e-103 2 (BJ445355) Dictyostelium discoideum cDNA clone:ddv59p05, 3' ... 289 e-103 2 (BJ428425) Dictyostelium discoideum cDNA clone:ddv11k24, 3' ... 289 e-103 2 (BJ442652) Dictyostelium discoideum cDNA clone:ddv50f17, 3' ... 289 e-103 2 (BJ441949) Dictyostelium discoideum cDNA clone:ddv48h11, 3' ... 289 e-103 2 (BJ350456) Dictyostelium discoideum cDNA clone:dda39m22, 3' ... 289 e-103 2 (BJ443665) Dictyostelium discoideum cDNA clone:ddv53n17, 3' ... 289 e-103 2 (BJ443647) Dictyostelium discoideum cDNA clone:ddv53k14, 3' ... 289 e-103 2 (BJ443600) Dictyostelium discoideum cDNA clone:ddv53p10, 3' ... 289 e-103 2 (BJ348816) Dictyostelium discoideum cDNA clone:dda34p10, 3' ... 289 e-103 2 (BJ347181) Dictyostelium discoideum cDNA clone:dda26h12, 3' ... 289 e-103 2
>(BJ437012) Dictyostelium discoideum cDNA clone:ddv32m20, 3' end, single read. Length = 734
Score = 1275 bits (643), Expect(3) = 0.0 Identities = 652/654 (99%) Strand = Plus / Minus
Query: 1 gggggaccactttcaactttaaaccatatgattaatcgctgttacactgcagtttcnttc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 734 gggggaccactttcaactttaaaccatatgattaatcgctgttacactgcagtttcnttc 675
Query: 61 cgggttattgtggtgggtggctaaattctaatttatatcctcgttccgctcaactcttcg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 674 cgggttattgtggtgggtggctaaattctaatttatatcctcgttccgctcaactcttcg 615
Query: 121 attgtagacgactatcaaatgaactaggtgctgtaagcttccgagtagcgttcagttacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 614 attgtagacgactatcaaatgaactaggtgctgtaagcttccgagtagcgttcagttacg 555
Query: 181 aggggttgaggcttttccattagttctttcttgtacatacaaaagatggccaccactgct 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 554 aggggttgaggcttttccattagttctttcttgtacatacaaaagatggccaccactgct 495
Query: 241 gttacccttaaagacgtctgcccacaagaattcattgctacctacgcaagattcttaaag 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 494 gttacccttaaagacgtctgcccacaagaattcattgctacctacgcaagattcttaaag 435
Query: 301 aaaactggtcgtgttcaaatcccaaaatggaatgatatcgccaaaactgccacctacaga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 434 aaaactggtcgtgttcaaatcccaaaatggaatgatatcgccaaaactgccacctacaga 375
Query: 361 gaactcccaccaaccaacccagattggatttactacagaattgccacccttgcccgtaaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 374 gaactcccaccaaccaacccagattggatttactacagaattgccacccttgcccgtaaa 315
Query: 421 gtttacatccgtggtggtgatggtgttgcaacctacagaagagttttcggtggtaaccgt 480 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 314 gtttacatccgtggtggtgatggtgttgcaacctatagaagagttttcggtggtaaccgt 255
Query: 481 agaaacggtgtcagaccaaatcactttgccgatgtcaatggtggaaacatccgttattgt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 254 agaaacggtgtcagaccaaatcactttgccgatgtcaatggtggaaacatccgtcattgt 195
Query: 541 ttaaaacaattacaaaacttaaaagtcattgaaaccgacgctgtcaaaggtggtcgtacc 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 194 ttaaaacaattacaaaacttaaaagtcattgaaaccgacgctgtcaaaggtggtcgtacc 135
Query: 601 atcactgctaccggccgtagagatctcgacagaatcgccaagcaaatctatgac 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 134 atcactgctaccggccgtagagatctcgacagaatcgccaagcaaatctatgac 81
Score = 97.6 bits (49), Expect(3) = 0.0 Identities = 49/49 (100%) Strand = Plus / Minus
Query: 665 caaaatctaaataatcacgatttaagtatttaaatgttttgcaacaaag 713 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 72 caaaatctaaataatcacgatttaagtatttaaatgttttgcaacaaag 24
Score = 32.2 bits (16), Expect(3) = 0.0 Identities = 16/16 (100%) Strand = Plus / Minus
Query: 714 attaacaaaatataat 729 |||||||||||||||| Sbjct: 22 attaacaaaatataat 7
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 680,151,251 Number of extensions: 37891145 Number of successful extensions: 3039536 Number of sequences better than 10.0: 296 Length of query: 831 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 807 Effective length of database: 97,308,875,965 Effective search space: 78528262903755 Effective search space used: 78528262903755 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 7 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
30 |
VH (FL, L) |
3 |
VF (FL, S) |
2 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
11 |
SS (DIR, S) |
2 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |