Contig-U13538-1
Contig ID Contig-U13538-1
Contig update 2002.12.18
Contig sequence
>Contig-U13538-1 (Contig-U13538-1Q) /CSM_Contig/Contig-U13538-1Q.Seq.d
GGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGC
AGTTTCNTTCCGGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCC
TCGTTCCGCTCAACTCTTCGATTGTAGACGACTATCAAATGAACTAGGTG
CTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCAT
TAGTTCTTTCTTGTACATACAAAAGATGGCCACCACTGCTGTTACCCTTA
AAGACGTCTGCCCACAAGAATTCATTGCTACCTACGCAAGATTCTTAAAG
AAAACTGGTCGTGTTCAAATCCCAAAATGGAATGATATCGCCAAAACTGC
CACCTACAGAGAACTCCCACCAACCAACCCAGATTGGATTTACTACAGAA
TTGCCACCCTTGCCCGTAAAGTTTACATCCGTGGTGGTGATGGTGTTGCA
ACCTACAGAAGAGTTTTCGGTGGTAACCGTAGAAACGGTGTCAGACCAAA
TCACTTTGCCGATGTCAATGGTGGAAACATCCGTTATTGTTTAAAACAAT
TACAAAACTTAAAAGTCATTGAAACCGACGCTGTCAAAGGTGGTCGTACC
ATCACTGCTACCGGCCGTAGAGATCTCGACAGAATCGCCAAGCAAATCTA
TGACAAAAAAAAAACAAAATCTAAATAATCACGATTTAAGTATTTAAATG
TTTTGCAACAAAGATTAACAAAATATAATAAAAACTAAAAAAAAAAAAAA
AAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Gap no gap
Contig length 831
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 1728405
End point 1728978
Strand (PLUS/MINUS) PLUS
Number of clones 48
Number of EST 66
Link to clone list U13538
List of clone(s)

est1=VHA679Z,1,734
est2=SLE529Z,167,736
est3=VFI358F,201,710
est4=VFI358Z,201,664
est5=VFI410F,201,750
est6=VFI410Z,201,739
est7=VSC504E,201,764
est8=VSD619F,214,750
est9=VSD619Z,214,731
est10=SLF538F,216,515
est11=VSH112F,217,750
est12=SLE529F,219,736
est13=VSD647F,219,750
est14=VSA144E,220,742
est15=VSE584E,220,742
est16=VSF788Z,220,726
est17=VSJ477F,220,462
est18=VSD592Z,221,731
est19=VSE706E,221,742
est20=VSI124Z,221,727
est21=VSB791Z,222,758
est22=VSI124F,222,750
est23=VSD601F,225,750
est24=VSD601Z,225,737
est25=VSH112Z,225,731
est26=SSK412E,226,736
est27=VSD617F,226,750
est28=VSB362E,228,742
est29=VSD476F,228,750
est30=VSD476Z,228,683
est31=SLA842E,231,764
est32=VSD460F,231,750
est33=VSD460Z,231,729
est34=VSD692Z,231,729
est35=VSG304F,231,750
est36=VSG304Z,231,715
est37=VSI572F,231,750
est38=VSI572Z,231,729
est39=VSD382Z,232,723
est40=VSF788F,232,750
est41=SLK264F,233,602
est42=VSD382F,233,750
est43=VSD617Z,234,729
est44=VSF257F,234,750
est45=VHH537F,236,763
est46=VSG523F,236,769
est47=VSC609E,238,761
est48=SLJ593F,244,555
est49=VHE222Z,256,619
est50=SLA126E,260,736
est51=SSE638E,277,734
est52=SLC480Z,282,736
est53=VSE512E,288,743
est54=VSC815Z,290,719
est55=VSA788Z,303,783
est56=SLK747Z,323,736
est57=VSC770Z,362,807
est58=SLJ235Z,456,735
est59=SLI151Z,458,736
est60=SLJ593Z,468,762
est61=VSF257Z,478,736
est62=SLF866E,526,830
est63=VSG215F,533,750
est64=VSG215Z,533,729
est65=VSE539Z,578,760
est66=SLF538Z,584,735
Translated Amino Acid sequence
ggplstlnhminrcytavsfrvivvgg*iliyilvplnssivddyqmn*vl*ase*rsvt
rg*GFSISSFLYIQKMATTAVTLKDVCPQEFIATYARFLKKTGRVQIPKWNDIAKTATYR
ELPPTNPDWIYYRIATLARKVYIRGGDGVATYRRVFGGNRRNGVRPNHFADVNGGNIRYC
LKQLQNLKVIETDAVKGGRTITATGRRDLDRIAKQIYDKKKTKSK*srfkylnvlqqrlt
kynkn*kkkkkakkkkkkkkkkkkkkkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
ggplstlnhminrcytavsfrvivvgg*iliyilvplnssivddyqmn*vl*ase*rsvt
rg*GFSISSFLYIQKMATTAVTLKDVCPQEFIATYARFLKKTGRVQIPKWNDIAKTATYR
ELPPTNPDWIYYRIATLARKVYIRGGDGVATYRRVFGGNRRNGVRPNHFADVNGGNIRYC
LKQLQNLKVIETDAVKGGRTITATGRRDLDRIAKQIYDKKKTKSK*srfkylnvlqqrlt
kynkn*kkkkkakkkkkkkkkkkkkkkkkkkkkkkkk


Frame B:
gdhfql*ti*liavtlqfxsgllwwvakf*fissfrstlrl*ttik*trccklpssvqlr
gveafplvlsctykrwpplllplktsahknsllptqds*rklvvfksqngmispklppte
nshqptqigfttelpplpvkftsvvvmvlqpteefsvvtvetvsdqitlpmsmvetsviv
*nnykt*kslkptlskvvvpsllpaveistespsksmtkkkqnlnnhdlsi*mfcnkd*q
niiktkkkkkkqkkkkkkkkkkkkkkkkkkkkkkkk


Frame C:
gttfnfkpyd*sllhcsfxpgycggwlnsnlyprsaqlfdcrrlsnelgavsfrvafsye
glrlfh*fflvhtkdghhccyp*rrlptrihcylrkilkenwscsnpkme*yrqnchlqr
tptnqprldllqnchpcp*slhpww*wccnlqksfrw*p*krcqtkslcrcqwwkhpllf
ktitklksh*nrrcqrwsyhhcyrp*rsrqnrqanl*qkknki*iiti*vfkcfatkink
i**klkkkkkskkkkkkkkkkkkkkkkkkkkkkkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U13538-1 (Contig-U13538-1Q)
/CSM_Contig/Contig-U13538-1Q.Seq.d
(831 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U13538-1 (Contig-U13538-1Q) /CSM_Contig/Conti... 1394 0.0
Contig-U13605-1 (Contig-U13605-1Q) /CSM_Contig/Conti... 391 e-109
Contig-U13545-1 (Contig-U13545-1Q) /CSM_Contig/Conti... 230 2e-60
Contig-U12592-1 (Contig-U12592-1Q) /CSM_Contig/Conti... 182 4e-46
Contig-U14674-1 (Contig-U14674-1Q) /CSM_Contig/Conti... 170 2e-42
Contig-U06938-1 (Contig-U06938-1Q) /CSM_Contig/Conti... 119 5e-27
Contig-U12416-1 (Contig-U12416-1Q) /CSM_Contig/Conti... 36 0.058
Contig-U14745-1 (Contig-U14745-1Q) /CSM_Contig/Conti... 34 0.23
Contig-U13873-1 (Contig-U13873-1Q) /CSM_Contig/Conti... 34 0.23
Contig-U12516-1 (Contig-U12516-1Q) /CSM_Contig/Conti... 34 0.23

>Contig-U13538-1 (Contig-U13538-1Q) /CSM_Contig/Contig-U13538-1Q.Seq.d
Length = 831

Score = 1394 bits (703), Expect = 0.0
Identities = 726/736 (98%)
Strand = Plus / Plus


Query: 1 gggggaccactttcaactttaaaccatatgattaatcgctgttacactgcagtttcnttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggggaccactttcaactttaaaccatatgattaatcgctgttacactgcagtttcnttc 60


Query: 61 cgggttattgtggtgggtggctaaattctaatttatatcctcgttccgctcaactcttcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgggttattgtggtgggtggctaaattctaatttatatcctcgttccgctcaactcttcg 120


Query: 121 attgtagacgactatcaaatgaactaggtgctgtaagcttccgagtagcgttcagttacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attgtagacgactatcaaatgaactaggtgctgtaagcttccgagtagcgttcagttacg 180


Query: 181 aggggttgaggcttttccattagttctttcttgtacatacaaaagatggccaccactgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aggggttgaggcttttccattagttctttcttgtacatacaaaagatggccaccactgct 240


Query: 241 gttacccttaaagacgtctgcccacaagaattcattgctacctacgcaagattcttaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gttacccttaaagacgtctgcccacaagaattcattgctacctacgcaagattcttaaag 300


Query: 301 aaaactggtcgtgttcaaatcccaaaatggaatgatatcgccaaaactgccacctacaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaactggtcgtgttcaaatcccaaaatggaatgatatcgccaaaactgccacctacaga 360


Query: 361 gaactcccaccaaccaacccagattggatttactacagaattgccacccttgcccgtaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaactcccaccaaccaacccagattggatttactacagaattgccacccttgcccgtaaa 420


Query: 421 gtttacatccgtggtggtgatggtgttgcaacctacagaagagttttcggtggtaaccgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtttacatccgtggtggtgatggtgttgcaacctacagaagagttttcggtggtaaccgt 480


Query: 481 agaaacggtgtcagaccaaatcactttgccgatgtcaatggtggaaacatccgttattgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agaaacggtgtcagaccaaatcactttgccgatgtcaatggtggaaacatccgttattgt 540


Query: 541 ttaaaacaattacaaaacttaaaagtcattgaaaccgacgctgtcaaaggtggtcgtacc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttaaaacaattacaaaacttaaaagtcattgaaaccgacgctgtcaaaggtggtcgtacc 600


Query: 601 atcactgctaccggccgtagagatctcgacagaatcgccaagcaaatctatgacnnnnnn 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 atcactgctaccggccgtagagatctcgacagaatcgccaagcaaatctatgacaaaaaa 660


Query: 661 nnnncaaaatctaaataatcacgatttaagtatttaaatgttttgcaacaaagattaaca 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aaaacaaaatctaaataatcacgatttaagtatttaaatgttttgcaacaaagattaaca 720


Query: 721 aaatataataaaaact 736
||||||||||||||||
Sbjct: 721 aaatataataaaaact 736


>Contig-U13605-1 (Contig-U13605-1Q) /CSM_Contig/Contig-U13605-1Q.Seq.d
Length = 832

Score = 391 bits (197), Expect = e-109
Identities = 206/208 (99%), Gaps = 1/208 (0%)
Strand = Plus / Plus


Query: 1 gggggaccactttcaactttaaaccatatgattaatcgctgttacactgcagtttcnttc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 61 gggggaccactttcaactttaaaccatatgattaatcgctgttacactgcagtttccttc 120


Query: 61 cgggttattgtggtgggtggctaaattctaatttatatcctcgttccgctcaactcttcg 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgg-ttattgtggtgggtggctaaattctaatttatatcctcgttccgctcaactcttcg 179


Query: 121 attgtagacgactatcaaatgaactaggtgctgtaagcttccgagtagcgttcagttacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 attgtagacgactatcaaatgaactaggtgctgtaagcttccgagtagcgttcagttacg 239


Query: 181 aggggttgaggcttttccattagttctt 208
||||||||||||||||||||||||||||
Sbjct: 240 aggggttgaggcttttccattagttctt 267


>Contig-U13545-1 (Contig-U13545-1Q) /CSM_Contig/Contig-U13545-1Q.Seq.d
Length = 708

Score = 230 bits (116), Expect = 2e-60
Identities = 116/116 (100%)
Strand = Plus / Plus


Query: 93 ttatatcctcgttccgctcaactcttcgattgtagacgactatcaaatgaactaggtgct 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttatatcctcgttccgctcaactcttcgattgtagacgactatcaaatgaactaggtgct 60


Query: 153 gtaagcttccgagtagcgttcagttacgaggggttgaggcttttccattagttctt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtaagcttccgagtagcgttcagttacgaggggttgaggcttttccattagttctt 116


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5400
Number of Sequences: 6905
Number of extensions: 5400
Number of successful extensions: 647
Number of sequences better than 10.0: 79
length of query: 831
length of database: 5,674,871
effective HSP length: 16
effective length of query: 815
effective length of database: 5,564,391
effective search space: 4534978665
effective search space used: 4534978665
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.11
Homology vs DNA
Query= Contig-U13538-1 (Contig-U13538-1Q) /CSM_Contig/Contig-U13538-1Q.Seq.d
(831 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ437012) Dictyostelium discoideum cDNA clone:ddv32m20, 3' ... 1275 0.0 3
(BJ444090) Dictyostelium discoideum cDNA clone:ddv55o03, 3' ... 852 0.0 4
(AU262609) Dictyostelium discoideum vegetative cDNA clone:VS... 876 0.0 2
(BJ413807) Dictyostelium discoideum cDNA clone:ddv17d04, 5' ... 876 0.0 2
(AU034809) Dictyostelium discoideum slug cDNA, clone SLE529. 866 0.0 2
(AU261309) Dictyostelium discoideum vegetative cDNA clone:VS... 862 0.0 2
(AU263309) Dictyostelium discoideum vegetative cDNA clone:VS... 860 0.0 2
(AU268187) Dictyostelium discoideum vegetative cDNA clone:VS... 858 0.0 2
(AU061518) Dictyostelium discoideum slug cDNA, clone SLE529. 858 0.0 2
(AU263218) Dictyostelium discoideum vegetative cDNA clone:VS... 854 0.0 2
(AU262251) Dictyostelium discoideum vegetative cDNA clone:VS... 850 0.0 2
(AU264364) Dictyostelium discoideum vegetative cDNA clone:VS... 850 0.0 2
(C91539) Dictyostelium discoideum slug cDNA, clone SSK412. 850 0.0 2
(AU268188) Dictyostelium discoideum vegetative cDNA clone:VS... 860 0.0 2
(AU264097) Dictyostelium discoideum vegetative cDNA clone:VS... 846 0.0 2
(AU261976) Dictyostelium discoideum vegetative cDNA clone:VS... 846 0.0 2
(AU033451) Dictyostelium discoideum slug cDNA, clone SLA842. 841 0.0 2
(AU264069) Dictyostelium discoideum vegetative cDNA clone:VS... 841 0.0 2
(AU266275) Dictyostelium discoideum vegetative cDNA clone:VS... 841 0.0 2
(AU265795) Dictyostelium discoideum vegetative cDNA clone:VS... 839 0.0 2
(AU264284) Dictyostelium discoideum vegetative cDNA clone:VS... 852 0.0 3
(AU266927) Dictyostelium discoideum vegetative cDNA clone:VS... 837 0.0 2
(BJ431918) Dictyostelium discoideum cDNA clone:ddv17d04, 3' ... 876 0.0 3
(AU264279) Dictyostelium discoideum vegetative cDNA clone:VS... 860 0.0 3
(AU264947) Dictyostelium discoideum vegetative cDNA clone:VS... 835 0.0 2
(AU264318) Dictyostelium discoideum vegetative cDNA clone:VS... 729 0.0 3
(AU264285) Dictyostelium discoideum vegetative cDNA clone:VS... 852 0.0 3
(AU266593) Dictyostelium discoideum vegetative cDNA clone:VS... 831 0.0 2
(AU266928) Dictyostelium discoideum vegetative cDNA clone:VS... 852 0.0 3
(AU262668) Dictyostelium discoideum vegetative cDNA clone:VS... 827 0.0 2
(BJ413958) Dictyostelium discoideum cDNA clone:ddv17d15, 5' ... 876 0.0 2
(AU264319) Dictyostelium discoideum vegetative cDNA clone:VS... 850 0.0 3
(AU268910) Dictyostelium discoideum vegetative cDNA clone:VS... 720 0.0 3
(AU263938) Dictyostelium discoideum vegetative cDNA clone:VS... 823 0.0 2
(AU264314) Dictyostelium discoideum vegetative cDNA clone:VS... 714 0.0 3
(BJ422566) Dictyostelium discoideum cDNA clone:ddv46i09, 5' ... 813 0.0 2
(AU268911) Dictyostelium discoideum vegetative cDNA clone:VS... 841 0.0 2
(AU264070) Dictyostelium discoideum vegetative cDNA clone:VS... 841 0.0 2
(AU266276) Dictyostelium discoideum vegetative cDNA clone:VS... 841 0.0 2
(AU265796) Dictyostelium discoideum vegetative cDNA clone:VS... 759 0.0 3
(AU263939) Dictyostelium discoideum vegetative cDNA clone:VS... 831 0.0 3
(AU264420) Dictyostelium discoideum vegetative cDNA clone:VS... 841 0.0 2
(AU264315) Dictyostelium discoideum vegetative cDNA clone:VS... 835 0.0 2
(C25502) Dictyostelium discoideum slug cDNA, clone SLA126. 783 0.0 2
(BJ432072) Dictyostelium discoideum cDNA clone:ddv17d15, 3' ... 870 0.0 1
(C92360) Dictyostelium discoideum slug cDNA, clone SSE638. 749 0.0 2
(AU034562) Dictyostelium discoideum slug cDNA, clone SLC480. 739 0.0 2
(AU263158) Dictyostelium discoideum vegetative cDNA clone:VS... 729 0.0 2
(AU264098) Dictyostelium discoideum vegetative cDNA clone:VS... 833 0.0 1
(AU054120) Dictyostelium discoideum slug cDNA, clone SLK747. 658 0.0 2
(AU060520) Dictyostelium discoideum slug cDNA, clone SLK264. 733 0.0 1
(AU262810) Dictyostelium discoideum vegetative cDNA clone:VS... 664 0.0 2
(AU261740) Dictyostelium discoideum vegetative cDNA clone:VS... 630 0.0 2
(AU262781) Dictyostelium discoideum vegetative cDNA clone:VS... 521 e-169 2
(BJ439006) Dictyostelium discoideum cDNA clone:ddv39k06, 3' ... 593 e-165 1
(AU061715) Dictyostelium discoideum slug cDNA, clone SLF538. 575 e-159 1
(AU053614) Dictyostelium discoideum slug cDNA, clone SLJ235. 394 e-138 2
(AU053208) Dictyostelium discoideum slug cDNA, clone SLI151. 391 e-136 2
(AU269982) Dictyostelium discoideum vegetative cDNA clone:VS... 480 e-131 1
(AU053741) Dictyostelium discoideum slug cDNA, clone SLJ593. 371 e-130 2
(AU264948) Dictyostelium discoideum vegetative cDNA clone:VS... 353 e-124 2
(AU060394) Dictyostelium discoideum slug cDNA, clone SLJ593. 404 e-108 1
(AY171066) Dictyostelium discoideum extrachromosomal palindr... 303 e-107 2
(BJ441844) Dictyostelium discoideum cDNA clone:ddv48e04, 3' ... 303 e-107 2
(BJ444668) Dictyostelium discoideum cDNA clone:ddv57i02, 3' ... 303 e-107 2
(AU034938) Dictyostelium discoideum slug cDNA, clone SLE369. 303 e-107 2
(AU052437) Dictyostelium discoideum slug cDNA, clone SLD317. 303 e-107 2
(AU275070) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 299 e-106 2
(AU271792) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 299 e-106 2
(BJ435954) Dictyostelium discoideum cDNA clone:ddv29j05, 3' ... 291 e-104 2
(BJ445714) Dictyostelium discoideum cDNA clone:ddv60l11, 3' ... 289 e-103 2
(BJ443023) Dictyostelium discoideum cDNA clone:ddv51m16, 3' ... 289 e-103 2
(BJ438901) Dictyostelium discoideum cDNA clone:ddv38g23, 3' ... 289 e-103 2
(BJ380833) Dictyostelium discoideum cDNA clone:ddc39a15, 3' ... 289 e-103 2
(BJ403693) Dictyostelium discoideum cDNA clone:dds25p20, 3' ... 289 e-103 2
(BJ442198) Dictyostelium discoideum cDNA clone:ddv49j06, 3' ... 289 e-103 2
(BJ438803) Dictyostelium discoideum cDNA clone:ddv38c18, 3' ... 289 e-103 2
(BJ352966) Dictyostelium discoideum cDNA clone:dda48c18, 3' ... 289 e-103 2
(BJ382219) Dictyostelium discoideum cDNA clone:ddc44c05, 3' ... 289 e-103 2
(BJ432234) Dictyostelium discoideum cDNA clone:ddv18h04, 3' ... 289 e-103 2
(BJ446763) Dictyostelium discoideum cDNA clone:ddv63c23, 3' ... 289 e-103 2
(BJ436703) Dictyostelium discoideum cDNA clone:ddv32a06, 3' ... 289 e-103 2
(BJ386398) Dictyostelium discoideum cDNA clone:ddc58i03, 3' ... 289 e-103 2
(BJ444600) Dictyostelium discoideum cDNA clone:ddv56k22, 3' ... 289 e-103 2
(BJ443837) Dictyostelium discoideum cDNA clone:ddv54e09, 3' ... 289 e-103 2
(BJ379207) Dictyostelium discoideum cDNA clone:ddc34i06, 3' ... 289 e-103 2
(BJ399314) Dictyostelium discoideum cDNA clone:dds5l09, 3' e... 289 e-103 2
(BJ443401) Dictyostelium discoideum cDNA clone:ddv52f20, 3' ... 289 e-103 2
(BJ405741) Dictyostelium discoideum cDNA clone:dds32f22, 3' ... 289 e-103 2
(BJ403213) Dictyostelium discoideum cDNA clone:dds24m08, 3' ... 289 e-103 2
(BJ445355) Dictyostelium discoideum cDNA clone:ddv59p05, 3' ... 289 e-103 2
(BJ428425) Dictyostelium discoideum cDNA clone:ddv11k24, 3' ... 289 e-103 2
(BJ442652) Dictyostelium discoideum cDNA clone:ddv50f17, 3' ... 289 e-103 2
(BJ441949) Dictyostelium discoideum cDNA clone:ddv48h11, 3' ... 289 e-103 2
(BJ350456) Dictyostelium discoideum cDNA clone:dda39m22, 3' ... 289 e-103 2
(BJ443665) Dictyostelium discoideum cDNA clone:ddv53n17, 3' ... 289 e-103 2
(BJ443647) Dictyostelium discoideum cDNA clone:ddv53k14, 3' ... 289 e-103 2
(BJ443600) Dictyostelium discoideum cDNA clone:ddv53p10, 3' ... 289 e-103 2
(BJ348816) Dictyostelium discoideum cDNA clone:dda34p10, 3' ... 289 e-103 2
(BJ347181) Dictyostelium discoideum cDNA clone:dda26h12, 3' ... 289 e-103 2

>(BJ437012) Dictyostelium discoideum cDNA clone:ddv32m20, 3' end,
single read.
Length = 734

Score = 1275 bits (643), Expect(3) = 0.0
Identities = 652/654 (99%)
Strand = Plus / Minus


Query: 1 gggggaccactttcaactttaaaccatatgattaatcgctgttacactgcagtttcnttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gggggaccactttcaactttaaaccatatgattaatcgctgttacactgcagtttcnttc 675


Query: 61 cgggttattgtggtgggtggctaaattctaatttatatcctcgttccgctcaactcttcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 cgggttattgtggtgggtggctaaattctaatttatatcctcgttccgctcaactcttcg 615


Query: 121 attgtagacgactatcaaatgaactaggtgctgtaagcttccgagtagcgttcagttacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 attgtagacgactatcaaatgaactaggtgctgtaagcttccgagtagcgttcagttacg 555


Query: 181 aggggttgaggcttttccattagttctttcttgtacatacaaaagatggccaccactgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aggggttgaggcttttccattagttctttcttgtacatacaaaagatggccaccactgct 495


Query: 241 gttacccttaaagacgtctgcccacaagaattcattgctacctacgcaagattcttaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gttacccttaaagacgtctgcccacaagaattcattgctacctacgcaagattcttaaag 435


Query: 301 aaaactggtcgtgttcaaatcccaaaatggaatgatatcgccaaaactgccacctacaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aaaactggtcgtgttcaaatcccaaaatggaatgatatcgccaaaactgccacctacaga 375


Query: 361 gaactcccaccaaccaacccagattggatttactacagaattgccacccttgcccgtaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gaactcccaccaaccaacccagattggatttactacagaattgccacccttgcccgtaaa 315


Query: 421 gtttacatccgtggtggtgatggtgttgcaacctacagaagagttttcggtggtaaccgt 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 314 gtttacatccgtggtggtgatggtgttgcaacctatagaagagttttcggtggtaaccgt 255


Query: 481 agaaacggtgtcagaccaaatcactttgccgatgtcaatggtggaaacatccgttattgt 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 254 agaaacggtgtcagaccaaatcactttgccgatgtcaatggtggaaacatccgtcattgt 195


Query: 541 ttaaaacaattacaaaacttaaaagtcattgaaaccgacgctgtcaaaggtggtcgtacc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ttaaaacaattacaaaacttaaaagtcattgaaaccgacgctgtcaaaggtggtcgtacc 135


Query: 601 atcactgctaccggccgtagagatctcgacagaatcgccaagcaaatctatgac 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 atcactgctaccggccgtagagatctcgacagaatcgccaagcaaatctatgac 81

Score = 97.6 bits (49), Expect(3) = 0.0
Identities = 49/49 (100%)
Strand = Plus / Minus


Query: 665 caaaatctaaataatcacgatttaagtatttaaatgttttgcaacaaag 713
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 caaaatctaaataatcacgatttaagtatttaaatgttttgcaacaaag 24

Score = 32.2 bits (16), Expect(3) = 0.0
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 714 attaacaaaatataat 729
||||||||||||||||
Sbjct: 22 attaacaaaatataat 7

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 680,151,251
Number of extensions: 37891145
Number of successful extensions: 3039536
Number of sequences better than 10.0: 296
Length of query: 831
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 807
Effective length of database: 97,308,875,965
Effective search space: 78528262903755
Effective search space used: 78528262903755
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 7
Homology vs Protein
Query= Contig-U13538-1 (Contig-U13538-1Q) /CSM_Contig/Contig-U13538-1Q.Seq.d
(831 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54X51) RecName: Full=40S ribosomal protein S19; 264 2e-69
AM482118_1(AM482118|pid:none) Vitis vinifera contig VV78X156932.... 139 1e-31
AC149197_14(AC149197|pid:none) Medicago truncatula clone mth2-33... 134 3e-30
(Q9FNP8) RecName: Full=40S ribosomal protein S19-3; &AB006696_1... 132 1e-29
(Q9SGA6) RecName: Full=40S ribosomal protein S19-1; &AC011664_1... 132 2e-29
EF081977_1(EF081977|pid:none) Picea sitchensis clone WS02724_L19... 130 4e-29
BT038863_1(BT038863|pid:none) Zea mays full-length cDNA clone ZM... 130 4e-29
AM458569_1(AM458569|pid:none) Vitis vinifera contig VV78X180401.... 130 5e-29
EF575851_1(EF575851|pid:none) Oryza sativa (indica cultivar-grou... 129 9e-29
(P40978) RecName: Full=40S ribosomal protein S19; &AC114983_12(... 129 1e-28
EU284825_1(EU284825|pid:none) TSA: Elaeis guineensis EgEfMPOB000... 127 4e-28
DQ241845_1(DQ241845|pid:none) Solanum tuberosum clone 186F02 40S... 127 6e-28
AY961468_1(AY961468|pid:none) Phytophthora infestans clone MY-23... 125 2e-27
AM048977_1(AM048977|pid:none) Hister sp. APV-2005 mRNA for ribos... 122 1e-26
(Q94613) RecName: Full=40S ribosomal protein S19; &T09674(T0967... 120 5e-26
AC114983_6(AC114983|pid:none) Oryza sativa (japonica cultivar-gr... 120 7e-26
(Q8T5Z4) RecName: Full=40S ribosomal protein S19; &AF491451_1(A... 119 9e-26
AP007150_349(AP007150|pid:none) Aspergillus oryzae RIB40 genomic... 118 2e-25
CP000591_243(CP000591|pid:none) Ostreococcus lucimarinus CCE9901... 118 3e-25
AC114983_8(AC114983|pid:none) Oryza sativa (japonica cultivar-gr... 117 5e-25
AY124025_1(AY124025|pid:none) Griffithsia japonica putative 40S ... 116 1e-24
(P27073) RecName: Full=40S ribosomal protein S19; AltName: Full=... 115 1e-24
EF134329_1(EF134329|pid:none) Oxyrrhis marina isolate Om-5p-11 4... 115 2e-24
DQ214153_1(DQ214153|pid:none) Taeniopygia guttata clone 0058P000... 114 4e-24
DQ214152_1(DQ214152|pid:none) Taeniopygia guttata clone 0058P005... 114 4e-24
(P24494) RecName: Full=40S ribosomal protein S19G; AltName: Full... 112 1e-23
X75543_1(X75543|pid:none) A.suum ALEP-1 gene for ribosomal prote... 111 3e-23
(P17074) RecName: Full=40S ribosomal protein S19; &(Q9CZX8) Rec... 111 3e-23
AY892456_1(AY892456|pid:none) Synthetic construct Homo sapiens c... 111 3e-23
(P39019) RecName: Full=40S ribosomal protein S19; &(Q32PD5) Rec... 111 3e-23
AY769335_1(AY769335|pid:none) Bombyx mori ribosomal protein S19 ... 110 6e-23
DQ066292_1(DQ066292|pid:none) Ixodes scapularis isolate is-all-3... 110 6e-23
BC059557_1(BC059557|pid:none) Danio rerio ribosomal protein S19,... 110 6e-23
(Q9DFR5) RecName: Full=40S ribosomal protein S19; &AF266167_1(A... 110 7e-23
AX885220_1(AX885220|pid:none) Sequence 1083 from Patent EP1033401. 110 7e-23
BT074869_1(BT074869|pid:none) Osmerus mordax clone omor-rgc-514-... 110 7e-23
CP001577_127(CP001577|pid:none) Micromonas sp. RCC299 chromosome... 109 1e-22
BC056505_1(BC056505|pid:none) Xenopus laevis ribosomal protein S... 109 1e-22
AF400216_1(AF400216|pid:none) Spodoptera frugiperda ribosomal pr... 109 1e-22
(Q29308) RecName: Full=40S ribosomal protein S19; Flags: Fragment; 108 2e-22
(P39698) RecName: Full=40S ribosomal protein S19S; &A54581(A545... 108 2e-22
FJ426148_1(FJ426148|pid:none) Epinephelus coioides 40S ribosomal... 108 3e-22
DQ104687_1(DQ104687|pid:none) Lycopersicon pimpinellifolium 40S ... 108 3e-22
(P61155) RecName: Full=40S ribosomal protein S19; &AY190739_1(A... 107 4e-22
BT049027_1(BT049027|pid:none) Salmo salar clone ssal-rgb2-656-09... 107 4e-22
BT058230_1(BT058230|pid:none) Salmo salar clone Contig2149 40S r... 107 4e-22
AK341081_1(AK341081|pid:none) Acyrthosiphon pisum ACYPI001643 mR... 107 5e-22
BT083268_1(BT083268|pid:none) Anoplopoma fimbria clone afim-evh-... 107 6e-22
DQ886792_1(DQ886792|pid:none) Argas monolakensis ribosomal prote... 106 8e-22
EZ000357_1(EZ000357|pid:none) TSA: Culex tarsalis Ctar-124 40S r... 106 8e-22
(P58234) RecName: Full=40S ribosomal protein S19-A; AltName: Ful... 106 1e-21
EZ000356_1(EZ000356|pid:none) TSA: Culex tarsalis Ctar-123 ribos... 106 1e-21
DQ104648_1(DQ104648|pid:none) Lycopersicon peruvianum 40S riboso... 106 1e-21
AY857477_1(AY857477|pid:none) Suberites domuncula S19 mRNA, comp... 105 2e-21
AJ563464_1(AJ563464|pid:none) Crassostrea gigas partial mRNA for... 104 3e-21
(O18650) RecName: Full=40S ribosomal protein S19; &AF016512_1(A... 103 5e-21
AB176644_1(AB176644|pid:none) Antheraea yamamai mRNA for ribosom... 103 7e-21
(Q9Y0H3) RecName: Full=40S ribosomal protein S19; &AF153049_1(A... 103 9e-21
EZ048880_1(EZ048880|pid:none) TSA: Stomoxys calcitrans SC-4-7-2 ... 103 9e-21
EU247184_1(EU247184|pid:none) Lycosa singoriensis clone LSsin108... 102 2e-20
AB000915_1(AB000915|pid:none) Fission yeast mRNA for ribosomal p... 102 2e-20
AY826143_1(AY826143|pid:none) Aedes albopictus clone AL_163 ribo... 102 2e-20
DQ104647_1(DQ104647|pid:none) Solanum ochranthum 40S ribosomal p... 101 3e-20
CP000883_70(CP000883|pid:none) Hemiselmis andersenii chromosome ... 98 3e-19
AY231734_1(AY231734|pid:none) Drosophila yakuba clone yak-em_RpS... 98 4e-19
(P39018) RecName: Full=40S ribosomal protein S19a; &AE014298_25... 98 4e-19
AY232066_1(AY232066|pid:none) Drosophila yakuba clone yak-ad_RpS... 98 4e-19
AY815933_1(AY815933|pid:none) Schistosoma japonicum SJCHGC06232 ... 97 5e-19
X73153_1(X73153|pid:none) D.melanogaster mRNA for ribosomal prot... 97 5e-19
FM992690_486(FM992690|pid:none) Candida dubliniensis CD36 chromo... 97 6e-19
FN315645_1(FN315645|pid:none) Schistosoma japonicum isolate Anhu... 97 6e-19
FN321326_1(FN321326|pid:none) Schistosoma japonicum isolate Anhu... 96 1e-18
CU928175_97(CU928175|pid:none) Zygosaccharomyces rouxii strain C... 96 2e-18
AY829786_1(AY829786|pid:none) Lonomia obliqua ribosomal protein ... 95 2e-18
AY350764_1(AY350764|pid:none) Parascaris univalens ribosomal pro... 95 2e-18
AE016817_243(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 94 5e-18
CU928165_38(CU928165|pid:none) Kluyveromyces thermotolerans stra... 93 9e-18
DQ286051_1(DQ286051|pid:none) Hydra vulgaris ribosomal protein S... 92 2e-17
AM849500_1(AM849500|pid:none) Pomphorhynchus laevis partial mRNA... 92 2e-17
(P07281) RecName: Full=40S ribosomal protein S19-B; AltName: Ful... 92 2e-17
(P07280) RecName: Full=40S ribosomal protein S19-A; AltName: Ful... 92 2e-17
FN392319_1134(FN392319|pid:none) Pichia pastoris GS115 chromosom... 92 3e-17
AP008209_1757(AP008209|pid:none) Oryza sativa (japonica cultivar... 91 5e-17
EU125004_1(EU125004|pid:none) Eurythoe complanata ribosomal prot... 91 5e-17
AY350763_1(AY350763|pid:none) Parascaris univalens ribosomal pro... 89 2e-16
AM910987_262(AM910987|pid:none) Plasmodium knowlesi strain H chr... 83 1e-14
CR940352_691(CR940352|pid:none) Theileria annulata strain Ankara... 82 2e-14
AL035477_18(AL035477|pid:none) Plasmodium falciparum MAL4P4. &A... 80 6e-14
(Q7KS38) RecName: Full=40S ribosomal protein S19b; &AE014297_35... 80 1e-13
CT005271_293(CT005271|pid:none) Leishmania major strain Friedlin... 77 9e-13
(O27653) RecName: Full=30S ribosomal protein S19e; &AE000666_15... 77 9e-13
BX950229_156(BX950229|pid:none) Methanococcus maripaludis strain... 77 9e-13
AM494940_92(AM494940|pid:none) Leishmania braziliensis chromosom... 77 9e-13
CP000099_442(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 77 9e-13
CP000080_293(CP000080|pid:none) Leishmania major strain Friedlin... 77 9e-13
AE010299_4011(AE010299|pid:none) Methanosarcina acetivorans str.... 76 1e-12
CP000493_1533(CP000493|pid:none) Hyperthermus butylicus DSM 5456... 75 2e-12
CP000575_1067(CP000575|pid:none) Staphylothermus marinus F1, com... 75 3e-12
AE008384_802(AE008384|pid:none) Methanosarcina mazei strain Goe1... 75 3e-12
CP000102_572(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 74 4e-12
CP000745_1149(CP000745|pid:none) Methanococcus maripaludis C7, c... 74 4e-12
CP001398_1196(CP001398|pid:none) Thermococcus gammatolerans EJ3,... 74 8e-12
AC087325_5(AC087325|pid:none) Trypanosoma brucei chromosome 4 cl... 73 1e-11
CP000505_469(CP000505|pid:none) Thermofilum pendens Hrk 5, compl... 72 2e-11
AJ248285_185(AJ248285|pid:none) Pyrococcus abyssi complete genom... 72 2e-11
AE009950_1499(AE009950|pid:none) Pyrococcus furiosus DSM 3638, c... 72 3e-11
CP000743_982(CP000743|pid:none) Methanococcus aeolicus Nankai-3,... 71 4e-11
CP000678_709(CP000678|pid:none) Methanobrevibacter smithii ATCC ... 71 4e-11
CR936257_1135(CR936257|pid:none) Natronomonas pharaonis DSM 2160... 68 4e-10
CP001140_1111(CP001140|pid:none) Desulfurococcus kamchatkensis 1... 67 5e-10
CP000852_1889(CP000852|pid:none) Caldivirga maquilingensis IC-16... 67 9e-10
CP001014_1644(CP001014|pid:none) Thermoproteus neutrophilus V24S... 66 2e-09
CP000968_1311(CP000968|pid:none) Candidatus Korarchaeum cryptofi... 65 2e-09
CP000660_1724(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135... 65 3e-09
CP000300_112(CP000300|pid:none) Methanococcoides burtonii DSM 62... 65 4e-09
CP000504_434(CP000504|pid:none) Pyrobaculum islandicum DSM 4184,... 64 5e-09
AE017199_187(AE017199|pid:none) Nanoarchaeum equitans Kin4-M, co... 64 6e-09
(P19952) RecName: Full=30S ribosomal protein S19e; AltName: Full... 64 8e-09
AY350765_1(AY350765|pid:none) Ascaris suum ribosomal protein S19... 63 1e-08
CP000866_1620(CP000866|pid:none) Nitrosopumilus maritimus SCM1, ... 62 2e-08
AE006641_319(AE006641|pid:none) Sulfolobus solfataricus P2, comp... 61 4e-08
CP001400_1605(CP001400|pid:none) Sulfolobus islandicus M.14.25, ... 60 1e-07
EU016605_26(EU016605|pid:none) Uncultured Group I marine crenarc... 59 1e-07
EU016643_3(EU016643|pid:none) Uncultured Group I marine crenarch... 59 2e-07
EU016652_7(EU016652|pid:none) Uncultured Group I marine crenarch... 59 2e-07
(Q97CU4) RecName: Full=30S ribosomal protein S19e; &BA000011_7(... 58 4e-07
BA000023_1500(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,... 56 2e-06
EU083133_1(EU083133|pid:none) Lutzomyia intermedia isolate IAF19... 53 1e-05
AY667161_1(AY667161|pid:none) Felis catus clone E96 ribosomal pr... 52 2e-05
EU083200_1(EU083200|pid:none) Lutzomyia whitmani isolate WAF19_C... 52 2e-05
EU083139_1(EU083139|pid:none) Lutzomyia intermedia isolate IAF19... 52 2e-05
EU958819_1(EU958819|pid:none) Zea mays clone 207958 unknown mRNA. 52 2e-05
EU083145_1(EU083145|pid:none) Lutzomyia intermedia isolate IAF19... 51 4e-05
EU083166_1(EU083166|pid:none) Lutzomyia intermedia isolate IAF19... 51 5e-05
EU083197_1(EU083197|pid:none) Lutzomyia whitmani isolate WAF19_C... 47 6e-04
AL590450_162(AL590450|pid:none) chromosome XI of strain GB-M1 of... 44 0.008
CP001365_2282(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 43 0.011
AY909425_1(AY909425|pid:none) Siniperca chuatsi clone C454 ribos... 43 0.011
FN322030_1(FN322030|pid:none) Schistosoma japonicum isolate Anhu... 34 6.7

>(Q54X51) RecName: Full=40S ribosomal protein S19;
Length = 148

Score = 264 bits (675), Expect = 2e-69
Identities = 130/143 (90%), Positives = 130/143 (90%)
Frame = +1

Query: 226 MATTAVTLKDVCPQEFIATYARFLKKTGRVQIPKWNDIAKTATYRELPPTNPDWIYYRIA 405
MATTAVTLKDVCPQEFIATYARFLKKTGRVQIPKWNDIAKTATYRELPPTNPDWIYYRIA
Sbjct: 1 MATTAVTLKDVCPQEFIATYARFLKKTGRVQIPKWNDIAKTATYRELPPTNPDWIYYRIA 60

Query: 406 TLARKVYIRGGDGVATYXXXXXXXXXXXXXPNHFADVNGGNIRYCLKQLQNLKVIETDAV 585
TLARKVYIRGGDGVATY PNHFADVNGGNIRYCLKQLQNLKVIETDAV
Sbjct: 61 TLARKVYIRGGDGVATYRRVFGGNRRNGVRPNHFADVNGGNIRYCLKQLQNLKVIETDAV 120

Query: 586 KGGRTITATGRRDLDRIAKQIYD 654
KGGRTITATGRRDLDRIAKQIYD
Sbjct: 121 KGGRTITATGRRDLDRIAKQIYD 143

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,336,399,659
Number of extensions: 27390852
Number of successful extensions: 70453
Number of sequences better than 10.0: 139
Number of HSP's gapped: 69788
Number of HSP's successfully gapped: 139
Length of query: 277
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 150
Effective length of database: 640,137,871
Effective search space: 96020680650
Effective search space used: 96020680650
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.92 gvh: 0.35 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for Contig-U13538-1 is cyt

VS (DIR, S) 30
VH (FL, L) 3
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 11
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0