Contig-U13521-1
Contig ID Contig-U13521-1
Contig update 2002.12.18
Contig sequence
>Contig-U13521-1 (Contig-U13521-1Q) /CSM_Contig/Contig-U13521-1Q.Seq.d
CAATCTGGTTCAACTTCATACAACTATGCATACATGCCACCACGTAATAA
ATATGGTAATGATTTTGATTTCATTTACTTCAAACTCTTTGATGGTGATC
TTTACTCTGAACTTTATACAGTCACTGTTAATGTTATTCATGTCAACCAA
CCACCAACAATCGAATTAGTTAGTTACAAGATTTTAGATGGCGTTTCAAG
TGAAGTCTTATTTGAAAATACTTCATTAATTAATATGAATATTAATACCA
CTGTCCTAATTAAATATTCTGGTAATGATATTGATGTTGATCAAGTTACT
CCATTAATTTCAATGATTCCAAATTTCCCACTTCGAGGTTCGCTTTACGC
TTATAATCCAACTGCTTCAAATTCATCAGGTGCGCCAATCACTCGTAACT
CTTCAAATGTTGAACAAAATGCTGATGGTTTTTACTATGTCGTATTTGTA
CCATCAAAAAAAACCTCTGGTGAAAGTTATGCACGTATTACATTTATTAT
GACTGACAATGGCGGTCTTAATTCACCAATCGTCGGNNNNNNNNN

Gap no gap
Contig length 545
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1204968
End point 1204433
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U13521
List of clone(s)

est1=VFO590F,1,536
Translated Amino Acid sequence
QSGSTSYNYAYMPPRNKYGNDFDFIYFKLFDGDLYSELYTVTVNVIHVNQPPTIELVSYK
ILDGVSSEVLFENTSLINMNINTTVLIKYSGNDIDVDQVTPLISMIPNFPLRGSLYAYNP
TASNSSGAPITRNSSNVEQNADGFYYVVFVPSKKTSGESYARITFIMTDNGGLNSPIVGX
X


Translated Amino Acid sequence (All Frames)
Frame A:
QSGSTSYNYAYMPPRNKYGNDFDFIYFKLFDGDLYSELYTVTVNVIHVNQPPTIELVSYK
ILDGVSSEVLFENTSLINMNINTTVLIKYSGNDIDVDQVTPLISMIPNFPLRGSLYAYNP
TASNSSGAPITRNSSNVEQNADGFYYVVFVPSKKTSGESYARITFIMTDNGGLNSPIVGX
X


Frame B:
nlvqlhttmhtchhvinmvmilisftsnslmviftlnfiqsllmlfmstnhqqsn*lvtr
f*mafqvksylkilh*li*ilipls*lnilvmilmlikllh*fq*fqishfevrftliiq
llqihqvrqslvtlqmlnkmlmvftmsylyhqkkplvkvmhvlhll*ltmavlihqssxx
x


Frame C:
iwfnfiqlcihatt**iw**f*fhllqtl*w*sll*tlyshc*cyscqpttnnris*lqd
frwrfk*sli*kyfin*yey*yhcpn*ifw**y*c*ssysinfndskfptsrfalrl*sn
cfkfircanhs*lfkc*tkc*wfllcrictikknlw*klctyyiyyd*qwrs*ftnrrxx
x


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U13521-1 (Contig-U13521-1Q)
/CSM_Contig/Contig-U13521-1Q.Seq.d
(545 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U13521-1 (Contig-U13521-1Q) /CSM_Contig/Conti... 1015 0.0
Contig-U12081-1 (Contig-U12081-1Q) /CSM_Contig/Conti... 38 0.010
Contig-U13595-1 (Contig-U13595-1Q) /CSM_Contig/Conti... 36 0.038
Contig-U12671-1 (Contig-U12671-1Q) /CSM_Contig/Conti... 36 0.038
Contig-U11922-1 (Contig-U11922-1Q) /CSM_Contig/Conti... 36 0.038
Contig-U11677-1 (Contig-U11677-1Q) /CSM_Contig/Conti... 36 0.038
Contig-U11367-1 (Contig-U11367-1Q) /CSM_Contig/Conti... 36 0.038
Contig-U08625-1 (Contig-U08625-1Q) /CSM_Contig/Conti... 36 0.038
Contig-U13413-1 (Contig-U13413-1Q) /CSM_Contig/Conti... 34 0.15
Contig-U09702-1 (Contig-U09702-1Q) /CSM_Contig/Conti... 32 0.59

>Contig-U13521-1 (Contig-U13521-1Q) /CSM_Contig/Contig-U13521-1Q.Seq.d
Length = 545

Score = 1015 bits (512), Expect = 0.0
Identities = 528/536 (98%)
Strand = Plus / Plus


Query: 1 caatctggttcaacttcatacaactatgcatacatgccaccacgtaataaatatggtaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caatctggttcaacttcatacaactatgcatacatgccaccacgtaataaatatggtaat 60


Query: 61 gattttgatttcatttacttcaaactctttgatggtgatctttactctgaactttataca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gattttgatttcatttacttcaaactctttgatggtgatctttactctgaactttataca 120


Query: 121 gtcactgttaatgttattcatgtcaaccaaccaccaacaatcgaattagttagttacaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcactgttaatgttattcatgtcaaccaaccaccaacaatcgaattagttagttacaag 180


Query: 181 attttagatggcgtttcaagtgaagtcttatttgaaaatacttcattaattaatatgaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attttagatggcgtttcaagtgaagtcttatttgaaaatacttcattaattaatatgaat 240


Query: 241 attaataccactgtcctaattaaatattctggtaatgatattgatgttgatcaagttact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attaataccactgtcctaattaaatattctggtaatgatattgatgttgatcaagttact 300


Query: 301 ccattaatttcaatgattccaaatttcccacttcgaggttcgctttacgcttataatcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccattaatttcaatgattccaaatttcccacttcgaggttcgctttacgcttataatcca 360


Query: 361 actgcttcaaattcatcaggtgcgccaatcactcgtaactcttcaaatgttgaacaaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 actgcttcaaattcatcaggtgcgccaatcactcgtaactcttcaaatgttgaacaaaat 420


Query: 421 gctgatggtttttactatgtcgtatttgtaccatcnnnnnnnncctctggtgaaagttat 480
||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 421 gctgatggtttttactatgtcgtatttgtaccatcaaaaaaaacctctggtgaaagttat 480


Query: 481 gcacgtattacatttattatgactgacaatggcggtcttaattcaccaatcgtcgg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcacgtattacatttattatgactgacaatggcggtcttaattcaccaatcgtcgg 536


>Contig-U12081-1 (Contig-U12081-1Q) /CSM_Contig/Contig-U12081-1Q.Seq.d
Length = 1399

Score = 38.2 bits (19), Expect = 0.010
Identities = 19/19 (100%)
Strand = Plus / Minus


Query: 2 aatctggttcaacttcata 20
|||||||||||||||||||
Sbjct: 521 aatctggttcaacttcata 503


>Contig-U13595-1 (Contig-U13595-1Q) /CSM_Contig/Contig-U13595-1Q.Seq.d
Length = 103

Score = 36.2 bits (18), Expect = 0.038
Identities = 21/22 (95%)
Strand = Plus / Plus


Query: 226 ttaattaatatgaatattaata 247
||||||||||| ||||||||||
Sbjct: 81 ttaattaatattaatattaata 102


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6953
Number of Sequences: 6905
Number of extensions: 6953
Number of successful extensions: 777
Number of sequences better than 10.0: 240
length of query: 545
length of database: 5,674,871
effective HSP length: 16
effective length of query: 529
effective length of database: 5,564,391
effective search space: 2943562839
effective search space used: 2943562839
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12.11
Homology vs DNA
Query= Contig-U13521-1 (Contig-U13521-1Q) /CSM_Contig/Contig-U13521-1Q.Seq.d
(545 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ417483) Dictyostelium discoideum cDNA clone:ddv30c23, 5' ... 902 0.0 2
(AC209142) Saimiri boliviensis boliviensis clone CH254-86G9,... 48 0.33 1
(AC188336) Aotus nancymaae clone CH258-143M4, WORKING DRAFT ... 48 0.33 1
(ER848158) PPTAF39TF Solanum tuberosum RHPOTKEY BAC ends Sol... 48 0.33 1
(ER801395) POTMS50TR Solanum tuberosum RHPOTKEY BAC ends Sol... 48 0.33 1
(BX005378) Zebrafish DNA sequence from clone DKEY-40H20 in l... 38 0.72 5
(AX417041) Sequence 4032 from Patent WO0228891. 38 1.0 7
(AC116655) Homo sapiens BAC clone RP11-1396O13 from 4, compl... 46 1.3 1
(AC097493) Homo sapiens BAC clone RP11-264E23 from 4, comple... 46 1.3 1
(AC073507) Homo sapiens chromosome 11 clone RP11-30E22 map 1... 46 1.3 1
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s... 38 1.8 4
(BX510921) Zebrafish DNA sequence from clone DKEY-13C13 in l... 40 1.9 2
(AC094175) Rattus norvegicus clone CH230-2M14, *** SEQUENCIN... 40 2.3 2
(AC189389) Brassica rapa subsp. pekinensis clone KBrB053J19,... 42 2.3 3
(CR354381) Zebrafish DNA sequence from clone CH211-156J22 in... 40 3.7 2
(CR376844) Zebrafish DNA sequence from clone DKEYP-51B7 in l... 38 4.9 3
(CU928186) Brassica rapa subsp. pekinensis clone KBrH102J15,... 40 5.0 4
(AC186357) Gallus gallus BAC clone CH261-98H10 from chromoso... 44 5.1 1
(AM436636) Vitis vinifera contig VV78X174041.14, whole genom... 44 5.1 1
(DQ309694) Bos taurus proton-dependent gastrointestinal pept... 44 5.1 1
(BC140526) Bos taurus solute carrier family 15 (oligopeptide... 44 5.1 1
(DQ302100) Vanhornia eucnemidarum mitochondrion, complete ge... 44 5.1 1
(AC097500) Homo sapiens BAC clone RP11-335G13 from 2, comple... 44 5.1 1
(AC171667) Bos taurus clone CH240-279O17, WORKING DRAFT SEQU... 44 5.1 1
(AZ139083) SP_0178_B1_E01_T7A Strongylocentrotus purpuratus,... 44 5.1 1
(EK213738) 1095460108298 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.1 1
(EJ374056) 1092963734382 Global-Ocean-Sampling_GS-28-01-01-1... 44 5.1 1
(ED252055) AUAC-aao85f04.g1 Ascaris suum whole genome shotgu... 44 5.1 1
(CW733193) MARC_792850 CHORI-240-261H16 Bos taurus genomic c... 44 5.1 1
(CW733170) MARC_792822 CHORI-240-261H16 Bos taurus genomic c... 44 5.1 1
(CR330682) mte1-6F17FM1 BAC end, cultivar Jemalong A17 of Me... 44 5.1 1
(EH155171) LB013110.CR_L20 GC_BGC-13 Bos taurus cDNA clone I... 44 5.1 1
(DV924950) LB0296.CR_N15 GC_BGC-29 Bos taurus cDNA clone IMA... 44 5.1 1
(CF660649) CcLM09a32c06f1 Carp muscle library 1 Cyprinus car... 44 5.1 1
(CP000425) Lactococcus lactis subsp. cremoris SK11, complete... 44 5.1 1
(AM406671) Lactococcus lactis subsp. cremoris MG1363, comple... 44 5.1 1
(CR735127) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 5.6 2
(AL512376) Human DNA sequence from clone RP11-182A7 on chrom... 30 6.4 7
(CT765930) Paramecium tetraurelia 5-PRIME EST from clone LK0... 36 9.1 2
(CZ537323) SRAA-aad08e04.b1 Strongyloides ratti whole genome... 36 9.3 2
(CT797641) Paramecium tetraurelia 5-PRIME EST from clone LK0... 36 9.3 2
(EK527247) 1095515646952 Global-Ocean-Sampling_GS-32-01-01-1... 40 9.5 2

>(BJ417483) Dictyostelium discoideum cDNA clone:ddv30c23, 5' end,
single read.
Length = 536

Score = 902 bits (455), Expect(2) = 0.0
Identities = 455/455 (100%)
Strand = Plus / Plus


Query: 1 caatctggttcaacttcatacaactatgcatacatgccaccacgtaataaatatggtaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caatctggttcaacttcatacaactatgcatacatgccaccacgtaataaatatggtaat 60


Query: 61 gattttgatttcatttacttcaaactctttgatggtgatctttactctgaactttataca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gattttgatttcatttacttcaaactctttgatggtgatctttactctgaactttataca 120


Query: 121 gtcactgttaatgttattcatgtcaaccaaccaccaacaatcgaattagttagttacaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcactgttaatgttattcatgtcaaccaaccaccaacaatcgaattagttagttacaag 180


Query: 181 attttagatggcgtttcaagtgaagtcttatttgaaaatacttcattaattaatatgaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attttagatggcgtttcaagtgaagtcttatttgaaaatacttcattaattaatatgaat 240


Query: 241 attaataccactgtcctaattaaatattctggtaatgatattgatgttgatcaagttact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attaataccactgtcctaattaaatattctggtaatgatattgatgttgatcaagttact 300


Query: 301 ccattaatttcaatgattccaaatttcccacttcgaggttcgctttacgcttataatcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccattaatttcaatgattccaaatttcccacttcgaggttcgctttacgcttataatcca 360


Query: 361 actgcttcaaattcatcaggtgcgccaatcactcgtaactcttcaaatgttgaacaaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 actgcttcaaattcatcaggtgcgccaatcactcgtaactcttcaaatgttgaacaaaat 420


Query: 421 gctgatggtttttactatgtcgtatttgtaccatc 455
|||||||||||||||||||||||||||||||||||
Sbjct: 421 gctgatggtttttactatgtcgtatttgtaccatc 455

Score = 141 bits (71), Expect(2) = 0.0
Identities = 71/71 (100%)
Strand = Plus / Plus


Query: 464 cctctggtgaaagttatgcacgtattacatttattatgactgacaatggcggtcttaatt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cctctggtgaaagttatgcacgtattacatttattatgactgacaatggcggtcttaatt 523


Query: 524 caccaatcgtc 534
|||||||||||
Sbjct: 524 caccaatcgtc 534

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 573,196,147
Number of extensions: 33308757
Number of successful extensions: 2643468
Number of sequences better than 10.0: 42
Length of query: 545
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 522
Effective length of database: 93,106,754,628
Effective search space: 48601725915816
Effective search space used: 48601725915816
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 7
Homology vs Protein
Query= Contig-U13521-1 (Contig-U13521-1Q) /CSM_Contig/Contig-U13521-1Q.Seq.d
(545 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54JA3) RecName: Full=Integrin beta-like protein E; Flags: Prec... 362 3e-99
(Q54JA5) RecName: Full=Integrin beta-like protein C; Flags: Prec... 245 6e-64
(Q54JA4) RecName: Full=Integrin beta-like protein D; Flags: Prec... 182 5e-45
(Q54KF7) RecName: Full=Integrin beta-like protein A; AltName: Fu... 107 2e-22
CP000108_1224(CP000108|pid:none) Chlorobium chlorochromatii CaD3... 47 2e-04
CP001614_271(CP001614|pid:none) Teredinibacter turnerae T7901, c... 42 0.014
CP000713_1352(CP000713|pid:none) Psychrobacter sp. PRwf-1, compl... 42 0.014
CP000656_503(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, co... 41 0.023
CP000607_429(CP000607|pid:none) Chlorobium phaeovibrioides DSM 2... 40 0.030
AM114193_2531(AM114193|pid:none) Uncultured methanogenic archaeo... 39 0.088
CP001173_554(CP001173|pid:none) Helicobacter pylori G27, complet... 37 0.26
CP000084_920(CP000084|pid:none) Candidatus Pelagibacter ubique H... 37 0.33
CP000926_185(CP000926|pid:none) Pseudomonas putida GB-1, complet... 36 0.75
AF405554_3(AF405554|pid:none) Cryptosporidium parvum hypothetica... 35 0.97
CP000361_1005(CP000361|pid:none) Arcobacter butzleri RM4018, com... 35 1.7
CP000627_1197(CP000627|pid:none) Vibrio cholerae O395 chromosome... 35 1.7
FM992695_668(FM992695|pid:none) Candida dubliniensis CD36 chromo... 35 1.7
CP001485_1719(CP001485|pid:none) Vibrio cholerae MJ-1236 chromos... 35 1.7
AE000512_590(AE000512|pid:none) Thermotoga maritima MSB8, comple... 35 1.7
CP001233_1536(CP001233|pid:none) Vibrio cholerae M66-2 chromosom... 35 1.7
CP001614_2327(CP001614|pid:none) Teredinibacter turnerae T7901, ... 34 2.2
CP000282_3313(CP000282|pid:none) Saccharophagus degradans 2-40, ... 34 2.2
CP000931_1280(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 34 2.8
(A7TSV7) RecName: Full=Actin cytoskeleton-regulatory complex pro... 34 2.8
AE001439_552(AE001439|pid:none) Helicobacter pylori J99, complet... 34 2.8
FM242711_151(FM242711|pid:none) Listeria monocytogenes Clip81459... 33 3.7
AY220730_15(AY220730|pid:none) Staphylococcus aureus V329 pathog... 33 3.7
CP000155_5381(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 33 3.7
FN357349_17(FN357349|pid:none) Schistosoma mansoni genome sequen... 33 3.7
CP000851_1248(CP000851|pid:none) Shewanella pealeana ATCC 700345... 33 3.7
CP001108_763(CP001108|pid:none) Prosthecochloris aestuarii DSM 2... 33 3.7
BX470218_6(BX470218|pid:none) Zebrafish DNA sequence from clone ... 33 4.8
CP000250_1634(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 33 4.8
CP000613_3738(CP000613|pid:none) Rhodospirillum centenum SW, com... 33 4.8
U66315_2(U66315|pid:none) Mycoplasma synoviae pcl42-56 immunodom... 33 6.3
AM295007_1331(AM295007|pid:none) Streptococcus pyogenes Manfredo... 33 6.3
AE1093(AE1093) hypothetical protein lmo0148 [imported] - Listeri... 33 6.3
(A2A4P0) RecName: Full=ATP-dependent RNA helicase DHX8; ... 32 8.2
BC044586_1(BC044586|pid:none) Homo sapiens DEAH (Asp-Glu-Ala-His... 32 8.2
CP001104_1574(CP001104|pid:none) Eubacterium eligens ATCC 27750,... 32 8.2
AK294046_1(AK294046|pid:none) Homo sapiens cDNA FLJ55457 complet... 32 8.2
(Q14562) RecName: Full=ATP-dependent RNA helicase DHX8; ... 32 8.2
AK142226_1(AK142226|pid:none) Mus musculus 13 days embryo heart ... 32 8.2
CP000375_1(CP000375|pid:none) Silicibacter sp. TM1040 plasmid, c... 32 8.2
CR861244_1(CR861244|pid:none) Pongo abelii mRNA; cDNA DKFZp459H0... 32 8.2
AM910995_383(AM910995|pid:none) Plasmodium knowlesi strain H chr... 32 8.2
CP000821_2940(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 32 8.2

>(Q54JA3) RecName: Full=Integrin beta-like protein E; Flags:
Precursor;
Length = 1946

Score = 362 bits (930), Expect = 3e-99
Identities = 179/179 (100%), Positives = 179/179 (100%)
Frame = +1

Query: 1 QSGSTSYNYAYMPPRNKYGNDFDFIYFKLFDGDLYSELYTVTVNVIHVNQPPTIELVSYK 180
QSGSTSYNYAYMPPRNKYGNDFDFIYFKLFDGDLYSELYTVTVNVIHVNQPPTIELVSYK
Sbjct: 1539 QSGSTSYNYAYMPPRNKYGNDFDFIYFKLFDGDLYSELYTVTVNVIHVNQPPTIELVSYK 1598

Query: 181 ILDGVSSEVLFENTSLINMNINTTVLIKYSGNDIDVDQVTPLISMIPNFPLRGSLYAYNP 360
ILDGVSSEVLFENTSLINMNINTTVLIKYSGNDIDVDQVTPLISMIPNFPLRGSLYAYNP
Sbjct: 1599 ILDGVSSEVLFENTSLINMNINTTVLIKYSGNDIDVDQVTPLISMIPNFPLRGSLYAYNP 1658

Query: 361 TASNSSGAPITRNSSNVEQNADGFYYVVFVPSKKTSGESYARITFIMTDNGGLNSPIVG 537
TASNSSGAPITRNSSNVEQNADGFYYVVFVPSKKTSGESYARITFIMTDNGGLNSPIVG
Sbjct: 1659 TASNSSGAPITRNSSNVEQNADGFYYVVFVPSKKTSGESYARITFIMTDNGGLNSPIVG 1717

Lambda K H
0.315 0.134 0.385

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 836,828,460
Number of extensions: 16867083
Number of successful extensions: 35127
Number of sequences better than 10.0: 47
Number of HSP's gapped: 35095
Number of HSP's successfully gapped: 62
Length of query: 181
Length of database: 1,051,180,864
Length adjustment: 120
Effective length of query: 61
Effective length of database: 662,793,784
Effective search space: 40430420824
Effective search space used: 40430420824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.75 gvh: 0.39 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum
4.0 %: peroxisomal

>> prediction for Contig-U13521-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0