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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13520-1
Contig ID Contig-U13520-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13520-1 (Contig-U13520-1Q) /CSM_Contig/Contig-U13520-1Q.Seq.d
GTTCAACGTTGGAAATTCATTATTTAAAGATTTAAGAAACAAAGTTGATC
AAGTTTCCAATAAAGATTCCGTTGAAATTGATTATGAAAAAGAAATTGAT
AGAGAAAGAAGACAAAATAAAATGGCCTCAAATGAACCAACTTTTGATAT
TTCCTCTGAATCAAATAGAACAATCTCTGTCAACTATAGTAATTTGGTTG
ATATTACCGTTAGTTACTATGTAATGGATATTGAACATCTTTTCTCAACC
AATCCATTCGTTCAACAAGAATTGGGTCACTTCCTTTATGTTACTCCAAA
TAAGAAGGAATCATTCTTACTCAAAGATAAATCTGGTACCTTTAACTTTA
AGATTCCAAATGAATTTGCCAATAGCAATGTTGTTATTGATGTAGTTTCA
GCTCAAATTCATCACAATATTACCGTTTACTCCAATAATCTTGCCGTATA
TATCACTGAAAAGGTTGGTCAACTCAGAGTTGTTCATAAACAAAAATCTC
AACCAATCTCAAAGACCTATATCAAAGTTTATAGTAAAAACAAAAATGGT
TCAGTTGAATTCTTTAAAGATGGTTACACAGATATTGCTGGTTACTTTGA
TTATTCAACAGTTTCATCTTTAGATATTTCAAATGTTTCTAAATTATCAA
TTCTTGTTCTTAGTAATCAATATGGTGCTGTAATCAAAGAAGCTAAACCA
CCAGGTTTTTAAATTCAAACTCATTATCACCCATTTTAATTTTAAATAAA
ATAAATAAATAAAAAGTTTTTAAATATTAAAA
Gap no gap
Contig length 782
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 147501
End point 146719
Strand (PLUS/MINUS) MINUS
Number of clones 5
Number of EST 5
Link to clone list U13520
List of clone(s) 

est1=VHN224Z,1,736
est2=VHA423Z,32,783
est3=VHC145Z,46,775
est4=VHD873Z,132,775
est5=VFN834Z,454,726
Translated Amino Acid sequence 
FNVGNSLFKDLRNKVDQVSNKDSVEIDYEKEIDRERRQNKMASNEPTFDISSESNRTISV
NYSNLVDITVSYYVMDIEHLFSTNPFVQQELGHFLYVTPNKKESFLLKDKSGTFNFKIPN
EFANSNVVIDVVSAQIHHNITVYSNNLAVYITEKVGQLRVVHKQKSQPISKTYIKVYSKN
KNGSVEFFKDGYTDIAGYFDYSTVSSLDISNVSKLSILVLSNQYGAVIKEAKPPGF*iqt
hyhpf*f*ik*inkkflnik
Translated Amino Acid sequence (All Frames) 
Frame A:
vqrwkfii*rfkkqs*ssfq*rfr*n*l*krn**rkktk*nglk*tnf*yfl*ik*nnlc
ql**fg*yyr*llcngy*tsflnqsirstrigslplcysk*egiiltqr*iwyl*l*dsk
*icq*qccy*csfssnssqyyrllq*scriyh*kgwstqscs*tkistnlkdlyqsl**k
qkwfs*il*rwlhrycwll*lfnsfifryfkcf*iinscs**siwccnqrs*ttrflnsn
slspililnkink*kvfky*


Frame B:
FNVGNSLFKDLRNKVDQVSNKDSVEIDYEKEIDRERRQNKMASNEPTFDISSESNRTISV
NYSNLVDITVSYYVMDIEHLFSTNPFVQQELGHFLYVTPNKKESFLLKDKSGTFNFKIPN
EFANSNVVIDVVSAQIHHNITVYSNNLAVYITEKVGQLRVVHKQKSQPISKTYIKVYSKN
KNGSVEFFKDGYTDIAGYFDYSTVSSLDISNVSKLSILVLSNQYGAVIKEAKPPGF*iqt
hyhpf*f*ik*inkkflnik


Frame C:
stleihylki*etklikfpikiplklimkkkliekedkikwpqmnqllifplnqieqsls
tiviwlilplvtm*wilnifsqpihsfnknwvtsfmllqirrnhsyskinlvpltlrfqm
nlpiamlllm*fqlkfitilpftpiilpyislkrlvnselfinknlnqsqrpiskfivkt
kmvqlnslkmvtqillvtliiqqfhl*ifqmflnyqflflvinmvl*skklnhqvfkfkl
iithfnfk*nk*iksf*ilk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13520-1 (Contig-U13520-1Q)
/CSM_Contig/Contig-U13520-1Q.Seq.d
         (782 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13520-1 (Contig-U13520-1Q) /CSM_Contig/Conti...  1459  0.0
Contig-U10985-1 (Contig-U10985-1Q) /CSM_Contig/Conti...    42  9e-04
Contig-U08146-1 (Contig-U08146-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U12086-1 (Contig-U12086-1Q) /CSM_Contig/Conti...    36  0.055
Contig-U11313-1 (Contig-U11313-1Q) /CSM_Contig/Conti...    36  0.055
Contig-U11153-1 (Contig-U11153-1Q) /CSM_Contig/Conti...    36  0.055
Contig-U09202-1 (Contig-U09202-1Q) /CSM_Contig/Conti...    36  0.055
Contig-U09180-1 (Contig-U09180-1Q) /CSM_Contig/Conti...    36  0.055
Contig-U06491-1 (Contig-U06491-1Q) /CSM_Contig/Conti...    36  0.055
Contig-U14509-1 (Contig-U14509-1Q) /CSM_Contig/Conti...    34  0.22

>Contig-U13520-1 (Contig-U13520-1Q) /CSM_Contig/Contig-U13520-1Q.Seq.d
          Length = 782

 Score = 1459 bits (736), Expect = 0.0
 Identities = 736/736 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttcaacgttggaaattcattatttaaagatttaagaaacaaagttgatcaagtttccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gttcaacgttggaaattcattatttaaagatttaagaaacaaagttgatcaagtttccaa 60

                                                                       
Query: 61  taaagattccgttgaaattgattatgaaaaagaaattgatagagaaagaagacaaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taaagattccgttgaaattgattatgaaaaagaaattgatagagaaagaagacaaaataa 120

                                                                       
Query: 121 aatggcctcaaatgaaccaacttttgatatttcctctgaatcaaatagaacaatctctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatggcctcaaatgaaccaacttttgatatttcctctgaatcaaatagaacaatctctgt 180

                                                                       
Query: 181 caactatagtaatttggttgatattaccgttagttactatgtaatggatattgaacatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caactatagtaatttggttgatattaccgttagttactatgtaatggatattgaacatct 240

                                                                       
Query: 241 tttctcaaccaatccattcgttcaacaagaattgggtcacttcctttatgttactccaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttctcaaccaatccattcgttcaacaagaattgggtcacttcctttatgttactccaaa 300

                                                                       
Query: 301 taagaaggaatcattcttactcaaagataaatctggtacctttaactttaagattccaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taagaaggaatcattcttactcaaagataaatctggtacctttaactttaagattccaaa 360

                                                                       
Query: 361 tgaatttgccaatagcaatgttgttattgatgtagtttcagctcaaattcatcacaatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgaatttgccaatagcaatgttgttattgatgtagtttcagctcaaattcatcacaatat 420

                                                                       
Query: 421 taccgtttactccaataatcttgccgtatatatcactgaaaaggttggtcaactcagagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taccgtttactccaataatcttgccgtatatatcactgaaaaggttggtcaactcagagt 480

                                                                       
Query: 481 tgttcataaacaaaaatctcaaccaatctcaaagacctatatcaaagtttatagtaaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgttcataaacaaaaatctcaaccaatctcaaagacctatatcaaagtttatagtaaaaa 540

                                                                       
Query: 541 caaaaatggttcagttgaattctttaaagatggttacacagatattgctggttactttga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 caaaaatggttcagttgaattctttaaagatggttacacagatattgctggttactttga 600

                                                                       
Query: 601 ttattcaacagtttcatctttagatatttcaaatgtttctaaattatcaattcttgttct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttattcaacagtttcatctttagatatttcaaatgtttctaaattatcaattcttgttct 660

                                                                       
Query: 661 tagtaatcaatatggtgctgtaatcaaagaagctaaaccaccaggtttttaaattcaaac 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tagtaatcaatatggtgctgtaatcaaagaagctaaaccaccaggtttttaaattcaaac 720

                           
Query: 721 tcattatcacccattt 736
           ||||||||||||||||
Sbjct: 721 tcattatcacccattt 736


>Contig-U10985-1 (Contig-U10985-1Q) /CSM_Contig/Contig-U10985-1Q.Seq.d
          Length = 4897

 Score = 42.1 bits (21), Expect = 9e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 90   aagaaattgatagagaaagaa 110
            |||||||||||||||||||||
Sbjct: 3665 aagaaattgatagagaaagaa 3685


>Contig-U08146-1 (Contig-U08146-1Q) /CSM_Contig/Contig-U08146-1Q.Seq.d
          Length = 732

 Score = 38.2 bits (19), Expect = 0.014
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 72  ttgaaattgattatgaaaaagaa 94
           ||||||||||| |||||||||||
Sbjct: 478 ttgaaattgatgatgaaaaagaa 500


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,069
Number of Sequences: 6905
Number of extensions: 11069
Number of successful extensions: 1108
Number of sequences better than 10.0: 129
length of query: 782
length of database: 5,674,871
effective HSP length: 16
effective length of query: 766
effective length of database: 5,564,391
effective search space: 4262323506
effective search space used: 4262323506
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.11
Homology vs DNA 
Query= Contig-U13520-1 (Contig-U13520-1Q) /CSM_Contig/Contig-U13520-1Q.Seq.d
         (782 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ444704) Dictyostelium discoideum cDNA clone:ddv57o06, 3' ...  1453   0.0    1
(BJ436444) Dictyostelium discoideum cDNA clone:ddv31n06, 3' ...  1392   0.0    1
(BJ437783) Dictyostelium discoideum cDNA clone:ddv35i11, 3' ...  1356   0.0    1
(BJ438875) Dictyostelium discoideum cDNA clone:ddv38b20, 3' ...  1193   0.0    1
(BJ435769) Dictyostelium discoideum cDNA clone:ddv28d10, 3' ...   196   e-124  3
(EC761360) PSE00008094 rw_mgpallid Polysphondylium pallidum ...    42   3e-10  6
(EJ621133) 1092963063425 Global-Ocean-Sampling_GS-29-01-01-1...    38   0.098  2
(EJ637683) 1093006406211 Global-Ocean-Sampling_GS-29-01-01-1...    38   0.098  2
(AC097513) Homo sapiens BAC clone RP11-419E3 from 4, complet...    32   0.099  10
(CE613664) tigr-gss-dog-17000327593827 Dog Library Canis lup...    40   0.099  2
(AC107470) Rattus norvegicus clone CH230-140P12, *** SEQUENC...    42   0.21   5
(CU862057) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.28   3
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    36   0.36   8
(CP000049) Borrelia turicatae 91E135, complete genome.             34   0.41   10
(AY728266) Trypanosoma cruzi voucher Dm28c zinc finger prote...    48   0.50   1
(FH982132) CHO_OF6830xj10f1.ab1 CHO_OF6 Nicotiana tabacum ge...    48   0.50   1
(FH433297) CHO_OF4971xo09r1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   0.50   1
(FH325863) CHO_OF4555xp07f1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   0.50   1
(FH226599) CHO_OF3396xm19r1.ab1 CHO_OF3 Nicotiana tabacum ge...    48   0.50   1
(ET999959) CHO_OF001xk11f1.ab1 CHO_OF Nicotiana tabacum geno...    48   0.50   1
(ET885010) CHO_OF090xl10f1.ab1 CHO_OF Nicotiana tabacum geno...    48   0.50   1
(ET833159) CHO_OF793xn17r1.ab1 CHO_OF Nicotiana tabacum geno...    48   0.50   1
(BJ375468) Dictyostelium discoideum cDNA clone:ddc18g21, 3' ...    48   0.50   1
(AC199308) Dasypus novemcinctus clone VMRC5-230F20, WORKING ...    38   0.98   6
(AC174831) Myotis lucifugus clone CH235-422D6, complete sequ...    32   1.0    2
(AC118073) Rattus norvegicus clone CH230-371G1, *** SEQUENCI...    38   1.5    7
(EK487344) 1095500037241 Global-Ocean-Sampling_GS-32-01-01-1...    44   1.5    2
(EL396453) CFFM7728.b1_O11.ab1 CFF(LMS) safflower Carthamus ...    34   1.6    3
(AC114463) Rattus norvegicus clone CH230-398M12, *** SEQUENC...    42   1.8    7
(AC183336) Colobus guereza clone CH272-275F14, complete sequ...    46   2.0    1
(AC122151) Macaca mulatta clone CH250-492A14, complete seque...    46   2.0    1
(AC087555) Papio anubis clone RP41-63I4, complete sequence.        46   2.0    1
(AC130156) Rattus norvegicus clone CH230-173C6, WORKING DRAF...    46   2.0    1
(ET777460) CHO_OF865xc16f1.ab1 CHO_OF Nicotiana tabacum geno...    46   2.0    1
(ER569557) 1093015786049 Global-Ocean-Sampling_GS-36-01-01-2...    46   2.0    1
(EJ982040) 1093022161777 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.0    1
(EJ954857) 1093018967363 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.0    1
(CU179680) Mycoplasma agalactiae PG2 chromosome, complete se...    46   2.0    1
(AC153932) Mus musculus 10 BAC RP24-266J23 (Roswell Park Can...    34   2.3    8
(AE014296) Drosophila melanogaster chromosome 3L, complete s...    34   2.6    2
(AC107137) Rattus norvegicus clone CH230-119P1, *** SEQUENCI...    40   3.2    7
(AF424783) Staphylococcus aureus phage phi 13, complete genome.    34   3.5    3
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771...    44   3.7    4
(EJ184266) 1092344142953 Global-Ocean-Sampling_GS-27-01-01-1...    36   3.7    2
(AC009375) Drosophila melanogaster 3L BAC RP98-44L18 (Roswel...    34   3.8    2
(AC010054) Drosophila melanogaster 3L BAC RP98-15E10 (Roswel...    34   3.8    2
(AP009705) Lotus japonicus genomic DNA, clone: LjT02A08, TM1...    38   3.9    3
(AF262039) Arabidopsis thaliana BAC F24J2.                         34   4.0    2
(AC014849) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    34   4.2    2
(AM454255) Vitis vinifera contig VV78X016738.18, whole genom...    36   4.4    4
(DD391962) Method and nucleic acids for the improved treatme...    36   4.5    2
(CQ807218) Sequence 668 from Patent WO2004035803.                  36   4.5    2
(CQ585107) Sequence 12865 from Patent WO0171042.                   34   4.5    2
(AC103437) Rattus norvegicus clone CH230-160E7, *** SEQUENCI...    38   4.9    8
(DR773022) ILLUMIGEN_MCQ_55368 Katze_MMTE Macaca mulatta cDN...    34   5.0    2
(AZ545702) ENTCZ42TR Entamoeba histolytica Sheared DNA Entam...    40   5.4    2
(AC008263) Arabidopsis thaliana chromosome 1 BAC F25A4 seque...    38   5.5    4
(AC131444) Rattus norvegicus clone CH230-5A7, *** SEQUENCING...    38   5.6    3
(AC188520) Canis Familiaris chromosome 11, clone XX-269B15, ...    44   5.6    6
(AC177421) Strongylocentrotus purpuratus clone R3-54J21, WOR...    42   5.8    5
(AL359394) Human DNA sequence from clone RP11-264M20 on chro...    42   5.8    5
(AF466304) Dictyostelium discoideum ABC transporter AbcB1 (a...    42   5.8    3
(BX548174) Prochlorococcus marinus MED4 complete genome.           34   6.8    17
(G51609) SHGC-79189 Human Homo sapiens STS genomic, sequence...    32   6.8    3
(AQ013964) RPCI11-24G4.TKBR RPCI-11 Homo sapiens genomic clo...    32   6.8    3
(AC183418) Pan troglodytes BAC clone CH251-218I21 from chrom...    32   6.9    7
(AC103192) Rattus norvegicus clone CH230-197B17, *** SEQUENC...    36   7.2    6
(AC096753) Homo sapiens BAC clone RP11-458O14 from 2, comple...    32   7.3    5
(BX537121) Zebrafish DNA sequence from clone CH211-196P24 in...    44   7.8    1
(BX322614) Zebrafish DNA sequence from clone CH211-215G1 in ...    44   7.8    1
(AC136645) Rattus norvegicus 7 BAC CH230-156H17 (Children's ...    44   7.8    1
(AC102398) Mus musculus chromosome 8, clone RP24-213P1, comp...    44   7.8    1
(AC101950) Mus musculus chromosome 1, clone RP24-149K4, comp...    44   7.8    1
(CT573029) M.truncatula DNA sequence from clone MTH2-67H11 o...    44   7.8    1
(AC189193) Brassica rapa subsp. pekinensis clone KBrB003A10,...    44   7.8    1
(AC142498) Medicago truncatula clone mth2-24a18, complete se...    44   7.8    1
(AC191158) Canis Familiaris, clone XX-174I24, complete seque...    44   7.8    1
(AC189715) Canis Familiaris, clone XX-1I7, complete sequence.      44   7.8    1
(AC104136) Homo sapiens BAC clone RP11-782E2 from 4, complet...    44   7.8    1
(AC021534) Homo sapiens chromosome 17, clone RP11-398J5, com...    44   7.8    1
(AC020689) Homo sapiens chromosome , clone RP11-440M23, comp...    44   7.8    1
(AC121331) Homo sapiens chromosome 3 clone RP11-52J14, WORKI...    44   7.8    1
(AC120478) Rattus norvegicus clone CH230-31C10, WORKING DRAF...    44   7.8    1
(AC096698) Rattus norvegicus clone CH230-154C12, WORKING DRA...    44   7.8    1
(CU695260) Brassica rapa subsp. pekinensis clone KBrB041I17,...    44   7.8    1
(CU694240) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.8    1
(CU469328) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.8    1
(AC211412) Zea mays chromosome 8 clone CH201-339E18; ZMMBBc0...    44   7.8    1
(AC201490) Strongylocentrotus purpuratus clone R3-3064H19, W...    44   7.8    1
(AC180906) Strongylocentrotus purpuratus clone R3-3064I16, W...    44   7.8    1
(AC177330) Strongylocentrotus purpuratus clone R3-46K15, WOR...    44   7.8    1
(AC163235) Salmo salar clone CH214-135C6, WORKING DRAFT SEQU...    44   7.8    1
(AQ386948) RPCI11-154F18.TV RPCI-11 Homo sapiens genomic clo...    44   7.8    1
(FH992863) CHO_OF6852xe20f1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   7.8    1
(ET695181) CHO_OF358xi17f1.ab1 CHO_OF Nicotiana tabacum geno...    44   7.8    1
(ER578624) 1093015824410 Global-Ocean-Sampling_GS-36-01-01-2...    44   7.8    1
(ER504719) 1093015416894 Global-Ocean-Sampling_GS-35-01-01-1...    44   7.8    1
(ER416996) 1092963676432 Global-Ocean-Sampling_GS-35-01-01-1...    44   7.8    1
(ER320600) 1092344176833 Global-Ocean-Sampling_GS-34-01-01-1...    44   7.8    1
(EK301148) 1095462365184 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.8    1

>(BJ444704) Dictyostelium discoideum cDNA clone:ddv57o06, 3' end,
           single read.
          Length = 736

 Score = 1453 bits (733), Expect = 0.0
 Identities = 733/733 (100%)
 Strand = Plus / Minus


Query: 1   gttcaacgttggaaattcattatttaaagatttaagaaacaaagttgatcaagtttccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gttcaacgttggaaattcattatttaaagatttaagaaacaaagttgatcaagtttccaa 677


Query: 61  taaagattccgttgaaattgattatgaaaaagaaattgatagagaaagaagacaaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 taaagattccgttgaaattgattatgaaaaagaaattgatagagaaagaagacaaaataa 617


Query: 121 aatggcctcaaatgaaccaacttttgatatttcctctgaatcaaatagaacaatctctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aatggcctcaaatgaaccaacttttgatatttcctctgaatcaaatagaacaatctctgt 557


Query: 181 caactatagtaatttggttgatattaccgttagttactatgtaatggatattgaacatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 caactatagtaatttggttgatattaccgttagttactatgtaatggatattgaacatct 497


Query: 241 tttctcaaccaatccattcgttcaacaagaattgggtcacttcctttatgttactccaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tttctcaaccaatccattcgttcaacaagaattgggtcacttcctttatgttactccaaa 437


Query: 301 taagaaggaatcattcttactcaaagataaatctggtacctttaactttaagattccaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 taagaaggaatcattcttactcaaagataaatctggtacctttaactttaagattccaaa 377


Query: 361 tgaatttgccaatagcaatgttgttattgatgtagtttcagctcaaattcatcacaatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgaatttgccaatagcaatgttgttattgatgtagtttcagctcaaattcatcacaatat 317


Query: 421 taccgtttactccaataatcttgccgtatatatcactgaaaaggttggtcaactcagagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 taccgtttactccaataatcttgccgtatatatcactgaaaaggttggtcaactcagagt 257


Query: 481 tgttcataaacaaaaatctcaaccaatctcaaagacctatatcaaagtttatagtaaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tgttcataaacaaaaatctcaaccaatctcaaagacctatatcaaagtttatagtaaaaa 197


Query: 541 caaaaatggttcagttgaattctttaaagatggttacacagatattgctggttactttga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 caaaaatggttcagttgaattctttaaagatggttacacagatattgctggttactttga 137


Query: 601 ttattcaacagtttcatctttagatatttcaaatgtttctaaattatcaattcttgttct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ttattcaacagtttcatctttagatatttcaaatgtttctaaattatcaattcttgttct 77


Query: 661 tagtaatcaatatggtgctgtaatcaaagaagctaaaccaccaggtttttaaattcaaac 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  tagtaatcaatatggtgctgtaatcaaagaagctaaaccaccaggtttttaaattcaaac 17


Query: 721 tcattatcaccca 733
           |||||||||||||
Sbjct: 16  tcattatcaccca 4

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 973,390,008
Number of extensions: 61288687
Number of successful extensions: 5052086
Number of sequences better than 10.0: 132
Length of query: 782
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 758
Effective length of database: 97,308,875,965
Effective search space: 73760127981470
Effective search space used: 73760127981470
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 7
Homology vs Protein 
Query= Contig-U13520-1 (Contig-U13520-1Q) /CSM_Contig/Contig-U13520-1Q.Seq.d
         (782 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014187_717(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    46   0.001
AL844509_223(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.14
BT037060_1(BT037060|pid:none) Zea mays full-length cDNA clone ZM...    39   0.19
EU956716_1(EU956716|pid:none) Zea mays clone 1571531 TPR domain ...    38   0.42
AJ749949_1388(AJ749949|pid:none) Francisella tularensis subsp. t...    37   0.55
CP000608_402(CP000608|pid:none) Francisella tularensis subsp. tu...    37   0.55
AL844504_95(AL844504|pid:none) Plasmodium falciparum 3D7 chromos...    37   0.71
BA000026_320(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    37   0.71
CP000393_3409(CP000393|pid:none) Trichodesmium erythraeum IMS101...    37   0.71
AE014187_324(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    36   1.2
AL844509_677(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    36   1.2
AL844506_46(AL844506|pid:none) Plasmodium falciparum 3D7 chromos...    36   1.2
CP000439_1315(CP000439|pid:none) Francisella tularensis subsp. n...    36   1.2
FJ406948_1(FJ406948|pid:none) Plasmodium reichenowi isolate CDC-...    36   1.2
AE014187_436(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    36   1.2
EU024653_1(EU024653|pid:none) Polistes sp. MD1 mitochondrion, pa...    36   1.2
AE015450_21(AE015450|pid:none) Mycoplasma gallisepticum strain R...    36   1.6
AF250284_213(AF250284|pid:none) Amsacta moorei entomopoxvirus, c...    36   1.6
(P59582) RecName: Full=Diaminopimelate epimerase;          Short...    35   2.1
AL606637_25(AL606637|pid:none) Oryza sativa genomic DNA, chromos...    35   2.7
AY166677_1(AY166677|pid:none) Plasmodium reichenowi reticulocyte...    35   2.7
AP008210_2363(AP008210|pid:none) Oryza sativa (japonica cultivar...    35   2.7
CT827954_17(CT827954|pid:none) Oryza sativa genomic DNA, chromos...    35   2.7
AB272104_1(AB272104|pid:none) Oryzias latipes EP-1 mRNA for ente...    35   3.5
CP000115_955(CP000115|pid:none) Nitrobacter winogradskyi Nb-255,...    35   3.5
CP000826_109(CP000826|pid:none) Serratia proteamaculans 568, com...    34   4.6
AE000782_629(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304,...    34   4.6
CP000749_519(CP000749|pid:none) Marinomonas sp. MWYL1, complete ...    34   6.0
AL844503_164(AL844503|pid:none) Plasmodium falciparum 3D7 chromo...    33   7.9
AL031746_4(AL031746|pid:none) Plasmodium falciparum DNA from MAL...    33   7.9
AF143472_1(AF143472|pid:none) Borrelia hermsii strain Man BdrC5 ...    33   7.9
EF100424_1(EF100424|pid:none) Plasmodium chabaudi strain AS-ART ...    33   7.9
CP000803_577(CP000803|pid:none) Francisella tularensis subsp. ho...    33   7.9
AM233362_674(AM233362|pid:none) Francisella tularensis subsp. ho...    33   7.9

>AE014187_717(AE014187|pid:none) Plasmodium falciparum 3D7 chromosome
            14, complete sequence.  &AE014828_11(AE014828|pid:none)
          Length = 1526

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 9/152 (5%)
 Frame = +2

Query: 2    FNVGNSLFKDLRNKVDQ---VSNKDSVEIDYEKEIDRERRQNKMASNEPTFDISSESNRT 172
            F+  N  F D   K +    ++N D++ IDY K       +NK+   E T D   ++N T
Sbjct: 900  FSYNNKYFNDFYEKNNYTFLINNNDTILIDYHK-----NDKNKIKIKEQTVD---DTNGT 951

Query: 173  ISVNYS---NLVDITVSYYVMDIEHLFS---TNPFVQQELGHFLYVTPNKKESFLLKDKS 334
            I  N     ++V+I   +    +EH ++    +  +   +  + Y T N   S+     S
Sbjct: 952  IEKNGDGNIDVVNIHGDHKNKMVEHNYNCVIKDDNISSPINCYEYYTNNSDVSYFAASNS 1011

Query: 335  GTFNFKIPNEFANSNVVIDVVSAQIHHNITVY 430
            G + + I  E    + +ID++   I+ NI ++
Sbjct: 1012 GLYKYNIKLELLTCSQIIDMIFFNINTNINIF 1043

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,073,636,589
Number of extensions: 20063877
Number of successful extensions: 62627
Number of sequences better than 10.0: 34
Number of HSP's gapped: 62510
Number of HSP's successfully gapped: 35
Length of query: 260
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 134
Effective length of database: 643,374,430
Effective search space: 86212173620
Effective search space used: 86212173620
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.43  gvh: 0.21  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for Contig-U13520-1 is cyt
VS (DIR, S) 0
VH (FL, L) 4
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0