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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13513-1
Contig ID Contig-U13513-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13513-1 (Contig-U13513-1Q) /CSM_Contig/Contig-U13513-1Q.Seq.d
TTTTTTTTTAAAAGTAAGGGCGTTATGAAAACTAAACCGAAAATCAGAAT
TTTTATTATTTTTTTAAATTTTAATTTAATTTTATTTTATTTAATTTAAT
TTTTTATTTTTCAAATGAAAAAATAAAAAATTAAAATTAAATGAAATATT
TTTACATGGAGATGCGCGAATTTGTTACGTTGTTGAGCTCATACTAACTT
TAAATTAATTTAGTTTTGAGTCTCTAACAGTATCACTCTGGGAAGAAATG
CATAAAGGTCATATAGGAAGAGATGCAACCTATGGGAACTACAAGACTAA
ATATTATAATATGGGATTGTATTCTTTTGTATCTGATGCAGTAGATACGT
GTGACATTTGCCAACGAAATAGAATAAAAGGTATAACAAAGGATTTTGCT
CCAATTGTAGATACCGAGGAATACTCAAGATTGGTTTATGATTTAACATC
AATTAAAGGTGAACATAAAGAAAAAGTTACATACGATGATGATAATGAAA
AGATACTAACTAAACTAGATGATCTTATCCAATATGACTCTGTACAACCG
TACGACACCGATGTTGTTTACATTATTCTATGCATAGATTCTTTTACAAA
ATTTGCTACTGGAAGATGTTTGACAACAAAGAGAACAGTTCCCATATACA
ATTTTTTGGCTCTCACGTACTTTGGCAAACCTGTGAAAGTATGGCACTGC
GATAATGGACGTGAATTTAAAAACAAAGTCCAAAAAGAATTCCTAAAACT
TTTTCCAGGCTCCAAGTCAGCACATGGAGCTCCTCGTACACCAACAACTC
AAGGGTATGGTAGAAAGATTGAATCGAACTATCAAGGAGAGGATCTCAAA
ATTAAAACAACAAGATTTTCTTGATGGTACTTCTAGGTCTCTTTCTGAAC
TATTAAAACAAGCTTTGTATGATTACAATAATACAAAAACAAGAACAATT
AAAATGACACCATCTCAAGCTGTTGGTATTGTTCCTTTGTTTATTAATGT
TCAATCAGAACAAGACTCTCAATCAATTGGTGTTTCAGATGTTTCAAAAG
AAGAAAGAACAGCTATTATTCTTGAAAATCTCACAAGTTACCAAAATCAA
TGGAATTCAAAACCACCAAAGGGATTGAAAGTTGGTGATACTGTACTCTT
TCTAGAAATTAAATCACCTTCCAAATCACCATCAATAGGAAAAATCGTTA
ATGTGATACCTTCAAAAAAAGTTGCAAAAACAAAGTTAACAAGGACACAA
AAATTAGAACTTGATTTGGTTGCAATTAATAGAAGGGGGTATGGGGAAAT
TAGAAAATAAAAACAAGGGCCAAATCAAAAAAACAAAAAAAACACAAA
Gap no gap
Contig length 1348
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 2275620
End point 2276227
Strand (PLUS/MINUS) PLUS
Number of clones 7
Number of EST 10
Link to clone list U13513
List of clone(s) 

est1=VSH464F,1,320
est2=VSH480F,1,301
est3=VSH582E,16,1007
est4=VSH464Z,18,289
est5=VSH480Z,18,289
est6=VFN845F,120,635
est7=VFN619F,159,481
est8=VFL524F,165,726
est9=VFL688F,178,830
est10=VFL524Z,658,1350
Translated Amino Acid sequence 
fflkvral*klnrksefllff*ili*fyfi*fnflffk*knkklklneiflhgdaricyv
veliltln*FSFESLTVSLWEEMHKGHIGRDATYGNYKTKYYNMGLYSFVSDAVDTCDIC
QRNRIKGITKDFAPIVDTEEYSRLVYDLTSIKGEHKEKVTYDDDNEKILTKLDDLIQYDS
VQPYDTDVVYIILCIDSFTKFATGRCLTTKRTVPIYNFLALTYFGKPVKVWHCDNGREFK
NKVQKEFLKLFPGSKSAHGAPRTPTTQGYGRKIESNYQGEDLKIKTTRFS*wyf*vsf*t
iktsfv*lq*yknknn*ndtisscwycsfvy*csirtrlsinwcfrcfkrrknsyys*ks
hklpksmefkttkgiesw*yctlsrn*itfqitinrknr*cdtfkkscknkvnkdtkirt
*fgcn**kgvwgn*kiktrakskkqkkhk
Translated Amino Acid sequence (All Frames) 
Frame A:
fffkskgvmktkpkirifiiflnfnlilfyli*ffifqmkk*kikik*niftwrcanllr
c*ahtnfkli*f*vsnsitlgrna*rsyrkrcnlwelqd*il*ygivffci*csryv*hl
ptk*nkrynkgfcsncryrgilkigl*fnin*r*t*rksyir****kdtn*tr*sypi*l
cttvrhrcclhysmhrffykicywkmfdnkensshiqffgshvlwqtcesmalr*wt*i*
kqspkripktfsrlqvstwsssytnnsrvw*kd*ielsrrgsqn*nnkiflmvllglfln
y*nklcmitiiqkqeqlk*hhlkllvlflcllmfnqnktlnqlvfqmfqkkkeqllflki
sqvtkingiqnhqrd*klvilysf*klnhlpnhhq*ekslm*ylqkklqkqs*qghkn*n
liwlqlieggmgklenknkgqikktkktq


Frame B:
fflkvral*klnrksefllff*ili*fyfi*fnflffk*knkklklneiflhgdaricyv
veliltln*FSFESLTVSLWEEMHKGHIGRDATYGNYKTKYYNMGLYSFVSDAVDTCDIC
QRNRIKGITKDFAPIVDTEEYSRLVYDLTSIKGEHKEKVTYDDDNEKILTKLDDLIQYDS
VQPYDTDVVYIILCIDSFTKFATGRCLTTKRTVPIYNFLALTYFGKPVKVWHCDNGREFK
NKVQKEFLKLFPGSKSAHGAPRTPTTQGYGRKIESNYQGEDLKIKTTRFS*wyf*vsf*t
iktsfv*lq*yknknn*ndtisscwycsfvy*csirtrlsinwcfrcfkrrknsyys*ks
hklpksmefkttkgiesw*yctlsrn*itfqitinrknr*cdtfkkscknkvnkdtkirt
*fgcn**kgvwgn*kiktrakskkqkkhk


Frame C:
ff*k*gryen*tenqnfyyffkf*fnfilfnlifyfsnekikn*n*mkyfymemrefvtl
lssy*l*inlvlsl*qyhsgkkcikvi*eemqpmgttrlniiiwdcillylmq*irvtfa
neie*kv*qrillql*iprntqdwfmi*hqlkvnikkklhtmmimkry*ln*milsnmtl
ynrttpmlftlfya*illqnllledv*qqreqfpytifwlsrtlanl*kygtaimdvnlk
tkskkns*nffqapsqhmellvhqqlkgmverlnrtikerisklkqqdfldgtsrslsel
lkqalydynntktrtikmtpsqavgivplfinvqseqdsqsigvsdvskeertaiilenl
tsyqnqwnskppkglkvgdtvlfleikspskspsigkivnvipskkvaktkltrtqklel
dlvainrrgygeirk*kqgpnqknkknt
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13513-1 (Contig-U13513-1Q)
/CSM_Contig/Contig-U13513-1Q.Seq.d
         (1348 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13513-1 (Contig-U13513-1Q) /CSM_Contig/Conti...  2296  0.0
Contig-U11413-1 (Contig-U11413-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U11931-1 (Contig-U11931-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U12300-1 (Contig-U12300-1Q) /CSM_Contig/Conti...    36  0.096
Contig-U11667-1 (Contig-U11667-1Q) /CSM_Contig/Conti...    36  0.096
Contig-U11478-1 (Contig-U11478-1Q) /CSM_Contig/Conti...    36  0.096
Contig-U10157-1 (Contig-U10157-1Q) /CSM_Contig/Conti...    36  0.096
Contig-U14815-1 (Contig-U14815-1Q) /CSM_Contig/Conti...    34  0.38
Contig-U14055-1 (Contig-U14055-1Q) /CSM_Contig/Conti...    34  0.38
Contig-U13431-1 (Contig-U13431-1Q) /CSM_Contig/Conti...    34  0.38

>Contig-U13513-1 (Contig-U13513-1Q) /CSM_Contig/Contig-U13513-1Q.Seq.d
          Length = 1348

 Score = 2296 bits (1158), Expect = 0.0
 Identities = 1172/1179 (99%)
 Strand = Plus / Plus

                                                                        
Query: 148  atttttacatggagatgcgcgaatttgttacgttgttgagctcatactaactttaaatta 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148  atttttacatggagatgcgcgaatttgttacgttgttgagctcatactaactttaaatta 207

                                                                        
Query: 208  atttagttttgagtctctaacagtatcactctgggaagaaatgcataaaggtcatatagg 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208  atttagttttgagtctctaacagtatcactctgggaagaaatgcataaaggtcatatagg 267

                                                                        
Query: 268  aagagatgcaacctatgggaactacaagactaaatattataatatgggattgtattcttt 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268  aagagatgcaacctatgggaactacaagactaaatattataatatgggattgtattcttt 327

                                                                        
Query: 328  tgtatctgatgcagtagatacgtgtgacatttgccaacgaaatagaataaaaggtataac 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328  tgtatctgatgcagtagatacgtgtgacatttgccaacgaaatagaataaaaggtataac 387

                                                                        
Query: 388  aaaggattttgctccaattgtagataccgaggaatactcaagattggtttatgatttaac 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388  aaaggattttgctccaattgtagataccgaggaatactcaagattggtttatgatttaac 447

                                                                        
Query: 448  atcaattaaaggtgaacataaagaaaaagttacatacgatgatgataatgaaaagatact 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448  atcaattaaaggtgaacataaagaaaaagttacatacgatgatgataatgaaaagatact 507

                                                                        
Query: 508  aactaaactagatgatcttatccaatatgactctgtacaaccgtacgacaccgatgttgt 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508  aactaaactagatgatcttatccaatatgactctgtacaaccgtacgacaccgatgttgt 567

                                                                        
Query: 568  ttacattattctatgcatagattcttttacaaaatttgctactggaagatgtttgacaac 627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568  ttacattattctatgcatagattcttttacaaaatttgctactggaagatgtttgacaac 627

                                                                        
Query: 628  aaagagaacagttcccatatacaattttttggctctcacgtactttggcaaacctgtgaa 687
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628  aaagagaacagttcccatatacaattttttggctctcacgtactttggcaaacctgtgaa 687

                                                                        
Query: 688  agtatggcactgcgataatggacgtgaatttaaaaacaaagtccaaaaagaattcctaaa 747
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688  agtatggcactgcgataatggacgtgaatttaaaaacaaagtccaaaaagaattcctaaa 747

                                                                        
Query: 748  actttttccaggctccaagtcagcacatggagctcctcgtacaccaacaactcaagggta 807
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748  actttttccaggctccaagtcagcacatggagctcctcgtacaccaacaactcaagggta 807

                                                                        
Query: 808  tggtagaaagattgaatcgaactatcaaggagaggatctcaaaattaaaacaacaagatt 867
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808  tggtagaaagattgaatcgaactatcaaggagaggatctcaaaattaaaacaacaagatt 867

                                                                        
Query: 868  ttcttgatggtacttctaggtctctttctgaactattaaaacaagctttgtatgattaca 927
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868  ttcttgatggtacttctaggtctctttctgaactattaaaacaagctttgtatgattaca 927

                                                                        
Query: 928  ataatacaaaaacaagaacaattaaaatgacaccatctcaagctgttggtattgttcctt 987
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928  ataatacaaaaacaagaacaattaaaatgacaccatctcaagctgttggtattgttcctt 987

                                                                        
Query: 988  tgtttattaatgttcaatcagaacaagactctcaatcaattggtgtttcagatgtttcaa 1047
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988  tgtttattaatgttcaatcagaacaagactctcaatcaattggtgtttcagatgtttcaa 1047

                                                                        
Query: 1048 aagaagaaagaacagctattattcttgaaaatctcacaagttaccaaaatcaatggaatt 1107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 aagaagaaagaacagctattattcttgaaaatctcacaagttaccaaaatcaatggaatt 1107

                                                                        
Query: 1108 caaaaccaccaaagggattgaaagttggtgatactgtactctttctagaaattaaatcac 1167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1108 caaaaccaccaaagggattgaaagttggtgatactgtactctttctagaaattaaatcac 1167

                                                                        
Query: 1168 cttccaaatcaccatcaataggaaaaatcgttaatgtgataccttcnnnnnnngttgcaa 1227
            ||||||||||||||||||||||||||||||||||||||||||||||       |||||||
Sbjct: 1168 cttccaaatcaccatcaataggaaaaatcgttaatgtgataccttcaaaaaaagttgcaa 1227

                                                                        
Query: 1228 aaacaaagttaacaaggacacaaaaattagaacttgatttggttgcaattaatagaaggg 1287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1228 aaacaaagttaacaaggacacaaaaattagaacttgatttggttgcaattaatagaaggg 1287

                                                   
Query: 1288 ggtatggggaaattagaaaataaaaacaagggccaaatc 1326
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 1288 ggtatggggaaattagaaaataaaaacaagggccaaatc 1326


 Score = 77.8 bits (39), Expect = 3e-14
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                 
Query: 10 aaaagtaagggcgttatgaaaactaaaccgaaaatcaga 48
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 10 aaaagtaagggcgttatgaaaactaaaccgaaaatcaga 48


>Contig-U11413-1 (Contig-U11413-1Q) /CSM_Contig/Contig-U11413-1Q.Seq.d
          Length = 1930

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 239 tgggaagaaatgcataaaggtcatataggaagagatgc 276
           ||||| || ||||||||||||||||| |||||||||||
Sbjct: 412 tgggacgagatgcataaaggtcatattggaagagatgc 449


 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 587 gattcttttacaaaatttgctactggaagatgt 619
           |||||||| ||||||||||| ||||||||||||
Sbjct: 760 gattctttcacaaaatttgcaactggaagatgt 792


 Score = 42.1 bits (21), Expect = 0.002
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 402 caattgtagataccgaggaatactcaagattggtttatgatttaacatc 450
           |||||| |||||| || || || |||||| |||||| ||||||||||||
Sbjct: 575 caattgaagatactgaagagtattcaagaatggtttttgatttaacatc 623


>Contig-U11931-1 (Contig-U11931-1Q) /CSM_Contig/Contig-U11931-1Q.Seq.d
          Length = 1531

 Score = 38.2 bits (19), Expect = 0.024
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1262 tgatttggttgcaattaat 1280
            |||||||||||||||||||
Sbjct: 137  tgatttggttgcaattaat 155


 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 1037 agatgtttcaaaaga 1051
            |||||||||||||||
Sbjct: 478  agatgtttcaaaaga 492


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,486
Number of Sequences: 6905
Number of extensions: 14486
Number of successful extensions: 1607
Number of sequences better than 10.0: 172
length of query: 1348
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1332
effective length of database: 5,564,391
effective search space: 7411768812
effective search space used: 7411768812
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.11
Homology vs DNA 
Query= Contig-U13513-1 (Contig-U13513-1Q) /CSM_Contig/Contig-U13513-1Q.Seq.d
         (1348 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ416097) Dictyostelium discoideum cDNA clone:ddv24o22, 5' ...  1294   0.0    1
(BJ395921) Dictyostelium discoideum cDNA clone:dds40n13, 5' ...  1287   0.0    1
(BJ337873) Dictyostelium discoideum cDNA clone:dda59c12, 5' ...  1279   0.0    1
(BJ364357) Dictyostelium discoideum cDNA clone:ddc31n08, 5' ...  1277   0.0    1
(BJ419431) Dictyostelium discoideum cDNA clone:ddv36h04, 5' ...  1273   0.0    1
(BJ417958) Dictyostelium discoideum cDNA clone:ddv31m05, 5' ...  1273   0.0    1
(BJ329041) Dictyostelium discoideum cDNA clone:dda30f13, 5' ...  1267   0.0    2
(BJ418157) Dictyostelium discoideum cDNA clone:ddv31h22, 5' ...  1259   0.0    1
(BJ369055) Dictyostelium discoideum cDNA clone:ddc49k05, 5' ...  1257   0.0    1
(BJ427449) Dictyostelium discoideum cDNA clone:ddv62p07, 5' ...  1241   0.0    1
(BJ420380) Dictyostelium discoideum cDNA clone:ddv39i04, 5' ...  1235   0.0    1
(BJ329146) Dictyostelium discoideum cDNA clone:dda30p21, 5' ...  1195   0.0    1
(BJ369345) Dictyostelium discoideum cDNA clone:ddc50o06, 5' ...  1189   0.0    1
(BJ323571) Dictyostelium discoideum cDNA clone:dda11a09, 5' ...  1183   0.0    1
(BJ327181) Dictyostelium discoideum cDNA clone:dda19c13, 5' ...  1176   0.0    1
(BJ324024) Dictyostelium discoideum cDNA clone:dda4k09, 5' e...  1134   0.0    1
(BJ387003) Dictyostelium discoideum cDNA clone:dds11h23, 5' ...  1132   0.0    2
(BJ369199) Dictyostelium discoideum cDNA clone:ddc49n15, 5' ...  1132   0.0    1
(BJ386768) Dictyostelium discoideum cDNA clone:dds10g15, 5' ...  1126   0.0    1
(BJ362403) Dictyostelium discoideum cDNA clone:ddc21k13, 5' ...  1126   0.0    1
(BJ424110) Dictyostelium discoideum cDNA clone:ddv51l12, 5' ...  1120   0.0    1
(BJ363459) Dictyostelium discoideum cDNA clone:ddc26b24, 5' ...  1114   0.0    1
(BJ362439) Dictyostelium discoideum cDNA clone:ddc21d19, 5' ...  1112   0.0    1
(BJ361110) Dictyostelium discoideum cDNA clone:ddc9l19, 5' e...  1110   0.0    1
(BJ324538) Dictyostelium discoideum cDNA clone:dda6e22, 5' e...  1066   0.0    1
(BJ388461) Dictyostelium discoideum cDNA clone:dds9l16, 5' e...   983   0.0    2
(BJ389964) Dictyostelium discoideum cDNA clone:dds20o16, 5' ...   955   0.0    2
(BJ434551) Dictyostelium discoideum cDNA clone:ddv24o05, 3' ...   813   0.0    3
(BJ398065) Dictyostelium discoideum cDNA clone:dds10g19, 3' ...   724   0.0    3
(BJ400740) Dictyostelium discoideum cDNA clone:dds14g18, 3' ...   722   0.0    3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...   591   0.0    6
(U57081) Dictyostelium discoideum Tdd-4 transposable element...   583   0.0    7
(BJ415929) Dictyostelium discoideum cDNA clone:ddv24o05, 5' ...  1003   0.0    2
(BJ336830) Dictyostelium discoideum cDNA clone:dda55d11, 5' ...   920   0.0    2
(BJ418183) Dictyostelium discoideum cDNA clone:ddv31n19, 5' ...   977   0.0    1
(BJ338635) Dictyostelium discoideum cDNA clone:dda62k09, 5' ...   952   0.0    1
(BJ360103) Dictyostelium discoideum cDNA clone:ddc4d10, 5' e...   938   0.0    1
(BJ330955) Dictyostelium discoideum cDNA clone:dda33i08, 5' ...   490   0.0    3
(BJ364850) Dictyostelium discoideum cDNA clone:ddc33p05, 5' ...   936   0.0    1
(BJ325662) Dictyostelium discoideum cDNA clone:dda1j20, 5' e...   924   0.0    1
(BJ424577) Dictyostelium discoideum cDNA clone:ddv52l20, 5' ...   922   0.0    1
(BJ424183) Dictyostelium discoideum cDNA clone:ddv51l15, 5' ...   922   0.0    1
(BJ427893) Dictyostelium discoideum cDNA clone:ddv63o23, 5' ...   920   0.0    1
(BJ421375) Dictyostelium discoideum cDNA clone:ddv42m09, 5' ...   906   0.0    1
(BJ338762) Dictyostelium discoideum cDNA clone:dda62o19, 5' ...   878   0.0    1
(AU267665) Dictyostelium discoideum vegetative cDNA clone:VS...   432   0.0    4
(BJ332166) Dictyostelium discoideum cDNA clone:dda38o04, 5' ...   801   0.0    1
(BJ327823) Dictyostelium discoideum cDNA clone:dda21l19, 5' ...   801   0.0    1
(BJ386872) Dictyostelium discoideum cDNA clone:dds11h02, 5' ...   494   0.0    2
(BJ325759) Dictyostelium discoideum cDNA clone:dda2j05, 5' e...   799   0.0    1
(BJ335258) Dictyostelium discoideum cDNA clone:dda49d16, 5' ...   785   0.0    1
(BJ334729) Dictyostelium discoideum cDNA clone:dda47h15, 5' ...   783   0.0    1
(BJ323520) Dictyostelium discoideum cDNA clone:dda11b06, 5' ...   777   0.0    1
(BJ390200) Dictyostelium discoideum cDNA clone:dds21c14, 5' ...   761   0.0    2
(BJ323631) Dictyostelium discoideum cDNA clone:dda11p12, 5' ...   775   0.0    1
(BJ326242) Dictyostelium discoideum cDNA clone:dda15n24, 5' ...   654   0.0    2
(BJ390999) Dictyostelium discoideum cDNA clone:dds14g18, 5' ...   646   0.0    2
(BJ425392) Dictyostelium discoideum cDNA clone:ddv55g14, 5' ...   767   0.0    1
(BJ328689) Dictyostelium discoideum cDNA clone:dda29h06, 5' ...   765   0.0    1
(BJ331388) Dictyostelium discoideum cDNA clone:dda35k01, 5' ...   761   0.0    1
(BJ330609) Dictyostelium discoideum cDNA clone:dda32l01, 5' ...   759   0.0    1
(BJ366342) Dictyostelium discoideum cDNA clone:ddc38k17, 5' ...   757   0.0    1
(BJ333731) Dictyostelium discoideum cDNA clone:dda43f24, 5' ...   757   0.0    1
(BJ332204) Dictyostelium discoideum cDNA clone:dda38g08, 5' ...   757   0.0    1
(BJ339034) Dictyostelium discoideum cDNA clone:dda63k22, 5' ...   755   0.0    1
(BJ369673) Dictyostelium discoideum cDNA clone:ddc51i11, 5' ...   753   0.0    1
(BJ334163) Dictyostelium discoideum cDNA clone:dda45i12, 5' ...   753   0.0    1
(BJ421950) Dictyostelium discoideum cDNA clone:ddv44i11, 5' ...   751   0.0    1
(BJ369596) Dictyostelium discoideum cDNA clone:ddc51j04, 5' ...   751   0.0    1
(BJ423456) Dictyostelium discoideum cDNA clone:ddv49c10, 5' ...   749   0.0    1
(BJ325247) Dictyostelium discoideum cDNA clone:dda13a14, 5' ...   749   0.0    1
(BJ335262) Dictyostelium discoideum cDNA clone:dda49e17, 5' ...   745   0.0    1
(BJ335154) Dictyostelium discoideum cDNA clone:dda49k01, 5' ...   745   0.0    1
(BJ339553) Dictyostelium discoideum cDNA clone:dda65c21, 5' ...   743   0.0    1
(BJ328012) Dictyostelium discoideum cDNA clone:dda22h17, 5' ...   690   0.0    2
(BJ339589) Dictyostelium discoideum cDNA clone:dda65j24, 5' ...   634   0.0    2
(BJ329385) Dictyostelium discoideum cDNA clone:dda24e21, 5' ...   654   0.0    2
(BJ328848) Dictyostelium discoideum cDNA clone:dda29c23, 5' ...   654   0.0    2
(BJ329907) Dictyostelium discoideum cDNA clone:dda26o15, 5' ...   654   0.0    2
(BJ418953) Dictyostelium discoideum cDNA clone:ddv34g17, 5' ...   729   0.0    1
(BJ326122) Dictyostelium discoideum cDNA clone:dda15f11, 5' ...   729   0.0    1
(BJ420938) Dictyostelium discoideum cDNA clone:ddv40m23, 5' ...   634   0.0    2
(BJ336415) Dictyostelium discoideum cDNA clone:dda53g22, 5' ...   609   0.0    2
(BJ338730) Dictyostelium discoideum cDNA clone:dda62c24, 5' ...   728   0.0    1
(BJ427063) Dictyostelium discoideum cDNA clone:ddv61l05, 5' ...   646   0.0    2
(BJ336648) Dictyostelium discoideum cDNA clone:dda54k16, 5' ...   634   0.0    2
(BJ423721) Dictyostelium discoideum cDNA clone:ddv50m06, 5' ...   634   0.0    2
(BJ339102) Dictyostelium discoideum cDNA clone:dda64k05, 5' ...   634   0.0    2
(BJ371577) Dictyostelium discoideum cDNA clone:ddc58j14, 5' ...   672   0.0    1
(BJ326228) Dictyostelium discoideum cDNA clone:dda15j22, 5' ...   303   0.0    3
(AU267664) Dictyostelium discoideum vegetative cDNA clone:VS...   656   0.0    1
(BJ329567) Dictyostelium discoideum cDNA clone:dda25c13, 5' ...   654   0.0    1
(BJ335512) Dictyostelium discoideum cDNA clone:dda50c17, 5' ...   650   0.0    1
(BJ323946) Dictyostelium discoideum cDNA clone:dda4d01, 5' e...   634   0.0    2
(BJ417668) Dictyostelium discoideum cDNA clone:ddv28j12, 5' ...   297   0.0    3
(BJ327002) Dictyostelium discoideum cDNA clone:dda18f20, 5' ...   646   0.0    1
(BJ339382) Dictyostelium discoideum cDNA clone:dda65k02, 5' ...   626   e-180  2
(BJ367277) Dictyostelium discoideum cDNA clone:ddc42f04, 5' ...   636   e-178  1
(BJ393140) Dictyostelium discoideum cDNA clone:dds30c10, 5' ...   339   e-171  2
(BJ342811) Dictyostelium discoideum cDNA clone:dda1n16, 3' e...   379   e-167  3

>(BJ416097) Dictyostelium discoideum cDNA clone:ddv24o22, 5' end,
           single read.
          Length = 653

 Score = 1294 bits (653), Expect = 0.0
 Identities = 653/653 (100%)
 Strand = Plus / Plus


Query: 177 acgttgttgagctcatactaactttaaattaatttagttttgagtctctaacagtatcac 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   acgttgttgagctcatactaactttaaattaatttagttttgagtctctaacagtatcac 60


Query: 237 tctgggaagaaatgcataaaggtcatataggaagagatgcaacctatgggaactacaaga 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tctgggaagaaatgcataaaggtcatataggaagagatgcaacctatgggaactacaaga 120


Query: 297 ctaaatattataatatgggattgtattcttttgtatctgatgcagtagatacgtgtgaca 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctaaatattataatatgggattgtattcttttgtatctgatgcagtagatacgtgtgaca 180


Query: 357 tttgccaacgaaatagaataaaaggtataacaaaggattttgctccaattgtagataccg 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttgccaacgaaatagaataaaaggtataacaaaggattttgctccaattgtagataccg 240


Query: 417 aggaatactcaagattggtttatgatttaacatcaattaaaggtgaacataaagaaaaag 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aggaatactcaagattggtttatgatttaacatcaattaaaggtgaacataaagaaaaag 300


Query: 477 ttacatacgatgatgataatgaaaagatactaactaaactagatgatcttatccaatatg 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttacatacgatgatgataatgaaaagatactaactaaactagatgatcttatccaatatg 360


Query: 537 actctgtacaaccgtacgacaccgatgttgtttacattattctatgcatagattctttta 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 actctgtacaaccgtacgacaccgatgttgtttacattattctatgcatagattctttta 420


Query: 597 caaaatttgctactggaagatgtttgacaacaaagagaacagttcccatatacaattttt 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caaaatttgctactggaagatgtttgacaacaaagagaacagttcccatatacaattttt 480


Query: 657 tggctctcacgtactttggcaaacctgtgaaagtatggcactgcgataatggacgtgaat 716
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tggctctcacgtactttggcaaacctgtgaaagtatggcactgcgataatggacgtgaat 540


Query: 717 ttaaaaacaaagtccaaaaagaattcctaaaactttttccaggctccaagtcagcacatg 776
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttaaaaacaaagtccaaaaagaattcctaaaactttttccaggctccaagtcagcacatg 600


Query: 777 gagctcctcgtacaccaacaactcaagggtatggtagaaagattgaatcgaac 829
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gagctcctcgtacaccaacaactcaagggtatggtagaaagattgaatcgaac 653

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,389,063,291
Number of extensions: 80884144
Number of successful extensions: 6742003
Number of sequences better than 10.0: 266
Length of query: 1348
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1324
Effective length of database: 97,308,875,965
Effective search space: 128836951777660
Effective search space used: 128836951777660
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 7
Homology vs Protein 
Query= Contig-U13513-1 (Contig-U13513-1Q) /CSM_Contig/Contig-U13513-1Q.Seq.d
         (1348 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U57081_2(U57081|pid:none) Dictyostelium discoideum Tdd-4 transpo...   406   e-112
U57081_1(U57081|pid:none) Dictyostelium discoideum Tdd-4 transpo...   406   e-112
DQ444472_1(DQ444472|pid:none) Nosema bombycis retrotransposon Nb...    42   1e-04
AY634221_2(AY634221|pid:none) Oikopleura dioica transposon LTR r...    48   0.001
AJ632329_3(AJ632329|pid:none) Cotesia congregata virus complete ...    36   0.002
AF420242_1(AF420242|pid:none) Drosophila melanogaster transposon...    34   0.003
AF541949_2(AF541949|pid:none) Drosophila melanogaster transposon...    33   0.006
AY089684_1(AY089684|pid:none) Drosophila melanogaster RH61266 fu...    33   0.006
(P10394) RecName: Full=Retrovirus-related Pol polyprotein from t...    37   0.013
AY928609_2(AY928609|pid:none) Drosophila melanogaster chromosome...    37   0.013
AY095181_1(AY095181|pid:none) Drosophila melanogaster GM07634 fu...    37   0.014
EU011973_1(EU011973|pid:none) Monosiga ovata retrotransposon gyp...    42   0.067
EU011977_1(EU011977|pid:none) Monosiga ovata retrotransposon gyp...    42   0.067
AF222049_2(AF222049|pid:none) Drosophila melanogaster Transpac t...    41   0.087
AM392879_1(AM392879|pid:none) Synthetic construct Homo sapiens c...    40   0.15
AK056369_1(AK056369|pid:none) Homo sapiens cDNA FLJ31807 fis, cl...    40   0.15
(Q6R2W3) RecName: Full=SCAN domain-containing protein 3; AltName...    40   0.15
AM393864_1(AM393864|pid:none) Synthetic construct Homo sapiens c...    40   0.15
AL671879_1(AL671879|pid:none) Human DNA sequence from clone XXba...    40   0.15
AB067512_1(AB067512|pid:none) Homo sapiens mRNA for KIAA1925 pro...    40   0.15
AJ893357_41(AJ893357|pid:none) Phytophthora infestans, clone PI-...    40   0.19
T43046(T43046) retrovirus-related pol polyprotein homolog - Medi...    30   0.21
AF232243_1(AF232243|pid:none) Tetrahymena thermophila clone Tlr ...    40   0.25
AF232242_1(AF232242|pid:none) Tetrahymena thermophila clone Tlr ...    40   0.25
AM479657_2(AM479657|pid:none) Vitis vinifera contig VV78X062003....    39   0.33
DQ645742_1(DQ645742|pid:none) Phytophthora sojae transposon Gyps...    39   0.43
AP008212_1155(AP008212|pid:none) Oryza sativa (japonica cultivar...    39   0.56
AF014792_1(AF014792|pid:none) Walleye epidermal hyperplasia viru...    38   0.73
AF448416_9(AF448416|pid:none) Zea mays B73 chromosome 9S bz geno...    38   0.73
AC096687_18(AC096687|pid:none) Oryza sativa chromosome 3 BAC OSJ...    38   0.74
AJ133521_2(AJ133521|pid:none) Drosophila buzzatii osvaldo retrot...    38   0.96
AY449460_10(AY449460|pid:none) Oikopleura dioica clone BACOIKO00...    33   0.98
AF411814_1(AF411814|pid:none) Amphotropic murine leukemia virus ...    37   1.3
AF232245_1(AF232245|pid:none) Tetrahymena thermophila clone Tlr ...    37   1.3
AF201902_2(AF201902|pid:none) Equine foamy virus, complete genome.     37   1.3
AY180916_3(AY180916|pid:none) Drosophila melanogaster blood tran...    35   1.3
AY236761_2(AY236761|pid:none) Recombinant M-MuLV/RaLV retrovirus...    37   1.6
M77661_2(M77661|pid:none) Magnaporthe grisea grh retroelement pu...    37   1.6
AY009101_1(AY009101|pid:none) Aedes aegypti LTR retrotransposon ...    37   1.6
AL731604_7(AL731604|pid:none) Oryza sativa genomic DNA, chromoso...    32   2.1
AP008215_50(AP008215|pid:none) Oryza sativa (japonica cultivar-g...    37   2.1
AC155341_12(AC155341|pid:none) Brassica rapa subsp. pekinensis c...    37   2.1
AE009948_1200(AE009948|pid:none) Streptococcus agalactiae 2603V/...    37   2.1
AP008212_1118(AP008212|pid:none) Oryza sativa (japonica cultivar...    37   2.1
EU697462_1(EU697462|pid:none) Podospora anserina retrotransposon...    37   2.1
AC093178_6(AC093178|pid:none) Oryza sativa (japonica cultivar-gr...    30   2.6
AL731620_14(AL731620|pid:none) Oryza sativa genomic DNA, chromos...    30   2.6
U04327_2(U04327|pid:none) Simian foamy virus SFVcpz, complete ge...    36   2.8
AY134750_2(AY134750|pid:none) Bovine foamy virus strain 3026, co...    36   2.8
S18738(S18738)pol protein - simian foamy virus (fragment)              36   2.8
AF098806_1(AF098806|pid:none) Sorghum bicolor Gypsy-Ty3 type ret...    36   2.8
A33562(A33562) pol polyprotein - simian foamy virus (type 1) (fr...    36   2.8
AF136491_1(AF136491|pid:none) Murine leukemia virus erv1 polymer...    36   2.8
(P23074) RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125P...    36   2.8
AC138448_16(AC138448|pid:none) Medicago truncatula clone mth2-11...    36   2.8
AF528565_16(AF528565|pid:none) Zea mays cultivar BSSS53 chromoso...    36   2.8
AY928610_2(AY928610|pid:none) Drosophila melanogaster chromosome...    36   2.8
AE014185_30(AE014185|pid:none) Plasmodium falciparum 3D7 chromos...    36   3.6
CP000141_1993(CP000141|pid:none) Carboxydothermus hydrogenoforma...    36   3.6
AJ279891_1(AJ279891|pid:none) Drosophila simulans partial int ge...    36   3.6
AC002391_3(AC002391|pid:none) Arabidopsis thaliana chromosome 2 ...    36   3.6
AY830091_2(AY830091|pid:none) Phytophthora infestans gypsy-like ...    36   3.6
AC005171_8(AC005171|pid:none) Arabidopsis thaliana chromosome 2 ...    36   3.6
S18211(S18211) hypothetical protein 2 - fruit fly (Drosophila vi...    33   4.4
M54978_1(M54978|pid:none) Human spumaretrovirus pol protein gene...    35   4.8
AY236762_2(AY236762|pid:none) Recombinant M-MuLV/RaLV retrovirus...    35   4.8
AF061282_20(AF061282|pid:none) Sorghum bicolor 22 kDa kafirin cl...    35   4.8
AF133052_3(AF133052|pid:none) Walleye epidermal hyperplasia viru...    35   4.8
(P27401) RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125P...    35   4.8
GNLJLK(B40820) pol polyprotein - simian foamy virus (type 3, str...    35   4.8
S52564(S52564)hypothetical protein 2 (clone Db314) - fruit fly (...    35   4.8
AP003510_10(AP003510|pid:none) Oryza sativa Japonica Group genom...    35   4.8
AM434825_3(AM434825|pid:none) Vitis vinifera contig VV78X093963....    35   4.8
DQ493647_7(DQ493647|pid:none) Zea mays cultivar NalTel bz locus ...    35   4.8
AC090482_20(AC090482|pid:none) Genomic sequence for Oryza sativa...    28   5.4
AC099042_24(AC099042|pid:none) Oryza sativa chromosome 10 BAC OS...    28   5.7
AF133256_1(AF133256|pid:none) Friend mink cell focus-forming vir...    35   6.2
(P03355) RecName: Full=Pol polyprotein; Contains:   RecName: Ful...    35   6.2
EU075331_1(EU075331|pid:none) Mutant Murine leukemia virus clone...    35   6.2
AF291406_1(AF291406|pid:none) Simian foamy virus isolate SFVbab ...    35   6.2
U87552_1(U87552|pid:none) Murine leukemia virus integrase (pol) ...    35   6.2
U51730_1(U51730|pid:none) Murine leukemia virus 10A1 strain reve...    35   6.2
EU075329_1(EU075329|pid:none) Murine leukemia virus isolate 4070...    35   6.2
AF291380_1(AF291380|pid:none) Simian foamy virus isolate SFVbab ...    35   6.2
U51729_1(U51729|pid:none) Murine leukemia virus 4070A amphotropi...    35   6.2
GNMV1M(A03956)HIV-1 retropepsin (EC 3.4.23.16) - Moloney murine ...    35   6.2
AF033811_1(AF033811|pid:none) Moloney murine leukemia virus, com...    35   6.2
AF291398_1(AF291398|pid:none) Simian foamy virus isolate SFVbab ...    35   6.2
EU075330_1(EU075330|pid:none) Mutant Murine leukemia virus clone...    35   6.2
(P31795) RecName: Full=Pol polyprotein; Contains:   RecName: Ful...    35   6.2
CR855060_5(CR855060|pid:none) Oryza sativa genomic DNA, chromoso...    35   6.2
AJ279897_1(AJ279897|pid:none) Drosophila sechellia partial int g...    35   6.2
AJ279898_1(AJ279898|pid:none) Drosophila mauritiana partial int ...    35   6.2
AC006954_4(AC006954|pid:none) Arabidopsis thaliana chromosome 2 ...    35   6.2
AJ279895_1(AJ279895|pid:none) Drosophila mauritiana partial int ...    35   6.2
BC033390_1(BC033390|pid:none) Homo sapiens KRAB-A domain contain...    35   6.2
AB070087_1(AB070087|pid:none) Macaca fascicularis testis cDNA cl...    35   6.2
AC145365_17(AC145365|pid:none) Oryza sativa (japonica cultivar-g...    30   7.0
AC121366_12(AC121366|pid:none) Oryza sativa (japonica cultivar-g...    30   7.1
AY236763_2(AY236763|pid:none) Recombinant M-MuLV/RaLV retrovirus...    35   8.1
AB187566_2(AB187566|pid:none) Murine leukemia virus Graffi GV-1....    35   8.1
AY818896_1(AY818896|pid:none) Murine leukemia virus serotype HEM...    35   8.1
AB187565_2(AB187565|pid:none) Murine leukemia virus Graffi GV-1....    35   8.1
AM431471_1(AM431471|pid:none) Vitis vinifera contig VV78X254227....    35   8.1
AJ279896_1(AJ279896|pid:none) Drosophila mauritiana partial int ...    35   8.1
DQ889229_2(DQ889229|pid:none) Drosophila erecta endogenous virus...    35   8.1
AF501265_1(AF501265|pid:none) Streptococcus dysgalactiae subsp. ...    35   8.1
AF049230_3(AF049230|pid:none) Dictyostelium discoideum LTR-retro...    35   8.1
AP003759_21(AP003759|pid:none) Oryza sativa Japonica Group genom...    35   8.1
AL929297_2(AL929297|pid:none) Zebrafish DNA sequence from clone ...    35   8.1
AB096217_5(AB096217|pid:none) Staphylococcus aureus DNA, type-IV...    35   8.1
AJ279886_1(AJ279886|pid:none) Drosophila teissieri partial int g...    35   8.1

>U57081_2(U57081|pid:none) Dictyostelium discoideum Tdd-4
           transposable element encodes putative transposition
           inhibitor and putative transposase, complete cds.
          Length = 646

 Score =  406 bits (1044), Expect = e-112
 Identities = 195/213 (91%), Positives = 199/213 (93%)
 Frame = +2

Query: 230 VSLWEEMHKGHIGRDATYGNYKTKYYNMGLYSFVSDAVDTCDICQRNRIKGITKDFAPIV 409
           VSLWEEMHKGHIGRDATYGNYKTKYYNMGLYSFVSDAVDTCDICQRNRIKGITKDFAPIV
Sbjct: 72  VSLWEEMHKGHIGRDATYGNYKTKYYNMGLYSFVSDAVDTCDICQRNRIKGITKDFAPIV 131

Query: 410 DTEEYSRLVYDLTSIKGEHKEKVTYDDDNEKILTKLDDLIQYDSVQPYDTDVVYIILCID 589
           DTEEYSRLVYDLTSIKGEHKEKVTYDDDNEKILTKLDDLIQYDSVQPYDTDVVYIILCID
Sbjct: 132 DTEEYSRLVYDLTSIKGEHKEKVTYDDDNEKILTKLDDLIQYDSVQPYDTDVVYIILCID 191

Query: 590 SFTKFATGRCLTTKRTVPIYNFLALTYFGKPVKVWHCDNGREFKNKVQKEFLKLFPGSKS 769
           SFTKFATGRCLTTKRTVPIYNFLALTYFGKPVKVWHCDNGREFKNKVQKEFLKLFPGSKS
Sbjct: 192 SFTKFATGRCLTTKRTVPIYNFLALTYFGKPVKVWHCDNGREFKNKVQKEFLKLFPGSKS 251

Query: 770 AHGAPRTPTTQGYGRKIESNYQGEDLKIKTTRF 868
           AHGAPRTPTTQG   ++    +    K+K   F
Sbjct: 252 AHGAPRTPTTQGMVERLNRTIKERISKLKQQDF 284

 Score =  229 bits (585), Expect = 1e-58
 Identities = 125/163 (76%), Positives = 134/163 (82%)
 Frame = +3

Query: 801  KGMVERLNRTIKERISKLKQQDFLDGTSRSLSELLKQALYDYNNTKTRTIKMTPSQAVGI 980
            +GMVERLNRTIKERISKLKQQDFLDGTSRSLSELLKQALYDYNNTKTRTIKM PSQAVGI
Sbjct: 262  QGMVERLNRTIKERISKLKQQDFLDGTSRSLSELLKQALYDYNNTKTRTIKMKPSQAVGI 321

Query: 981  VPLFINVQSEQDSQSIGVSDVSKEERTAIILENLTSYQNQWNSKPPKGLKVGDTVLFLEX 1160
            VPLFINVQSEQDSQSIGVSDVSKEERTAIILENLTSYQNQWNSKPPKGLKVGDTVLFLE
Sbjct: 322  VPLFINVQSEQDSQSIGVSDVSKEERTAIILENLTSYQNQWNSKPPKGLKVGDTVLFLEI 381

Query: 1161 XXXXXXXXXGKIVNVIPSKKVAKTKLTRTQKLELDLVAINRRG 1289
                      KI  VI        +L + + LE  + ++ ++G
Sbjct: 382  KKNNKILILCKIHKVIQED---TKQLYKLEFLEDGINSLQKKG 421

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,952,784,357
Number of extensions: 36725488
Number of successful extensions: 132943
Number of sequences better than 10.0: 112
Number of HSP's gapped: 132828
Number of HSP's successfully gapped: 133
Length of query: 449
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 317
Effective length of database: 623,955,076
Effective search space: 197793759092
Effective search space used: 197793759092
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U13513-1 is cyt
VS (DIR, S) 3
VH (FL, L) 0
VF (FL, S) 4
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0