Contig-U13495-1 |
Contig ID |
Contig-U13495-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
737 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
663260 |
End point |
662523 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
2 |
Number of EST |
2 |
Link to clone list |
U13495 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.10 |
Homology vs DNA |
Query= Contig-U13495-1 (Contig-U13495-1Q) /CSM_Contig/Contig-U13495-1Q.Seq.d (737 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ434289) Dictyostelium discoideum cDNA clone:ddv16n08, 3' ... 878 0.0 3 (C84826) Dictyostelium discoideum slug cDNA, clone SSG653. 537 0.0 2 (AU073315) Dictyostelium discoideum slug cDNA, clone SSG653. 442 e-120 1 (BJ413629) Dictyostelium discoideum cDNA clone:ddv16n08, 5' ... 64 8e-06 1 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 38 0.002 12 (AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 40 0.006 9 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 32 0.006 17 (AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 36 0.008 10 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 36 0.010 14 (CP000538) Campylobacter jejuni subsp. jejuni 81-176, comple... 38 0.018 2 (DQ493923) Campylobacter jejuni subsp. jejuni 81-176 probabl... 38 0.023 2 (AY920336) Campylobacter jejuni hypothetical protein (CJB152... 38 0.023 2 (AY681264) Campylobacter jejuni isolate Contig_101 Cj81-068 ... 38 0.023 2 (AE014850) Plasmodium falciparum 3D7 chromosome 12, section ... 38 0.027 10 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 34 0.031 10 (AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6... 32 0.045 12 (AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s... 30 0.071 14 (EF420157) Tanapox virus isolate TPV-RoC, complete genome. 38 0.090 6 (EF420156) Tanapox virus isolate TPV-Kenya, complete genome. 38 0.090 6 (CP000727) Clostridium botulinum A str. Hall, complete genome. 36 0.100 15 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 32 0.10 14 (Z97348) Plasmodium falciparum MAL3P1. 40 0.12 8 (ED248448) AUAC-aad06d04.g1 Ascaris suum whole genome shotgu... 50 0.12 1 (CZ106325) OM__Ba0116D13.r OM__Ba Oryza minuta genomic clone... 50 0.12 1 (CP000726) Clostridium botulinum A str. ATCC 19397, complete... 36 0.13 15 (AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 36 0.14 15 (BX548174) Prochlorococcus marinus MED4 complete genome. 34 0.14 19 (AL773593) Zebrafish DNA sequence from clone CH211-202N20 in... 40 0.16 5 (BI815167) PfESToaa15c06.y1 Plasmodium falciparum 3D7 asexua... 46 0.21 2 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 38 0.22 10 (AE017245) Mycoplasma synoviae 53, complete genome. 34 0.30 12 (ET660122) MUGQ_CH252P446G24T7_CP856_090 CHORI-252 Vervet Mo... 46 0.30 2 (CR548632) Zebrafish DNA sequence from clone DKEY-175H17 in ... 36 0.33 5 (CX575084) TTE00031531 Amplicon Express - Conjugative Form T... 38 0.34 3 (BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 32 0.35 18 (AM662001) Entamoeba moshkovskii FIC GSS, clone mosh116e11.q1k. 32 0.37 3 (BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 38 0.37 15 (AC139653) Rattus norvegicus clone CH230-304M11, WORKING DRA... 38 0.40 7 (AC189268) Brassica rapa subsp. pekinensis clone KBrB022P06,... 38 0.40 8 (AC126649) Rattus norvegicus clone CH230-134G15, WORKING DRA... 38 0.45 6 (CP000743) Methanococcus aeolicus Nankai-3, complete genome. 32 0.46 19 (AC171001) Mus musculus BAC clone RP23-317I13 from chromosom... 48 0.47 1 (AC157595) Mus musculus BAC clone RP23-238F18 from chromosom... 48 0.47 1 (AC156566) Mus musculus BAC clone RP23-337B16 from chromosom... 48 0.47 1 (AC150684) Mus musculus BAC clone RP23-268G6 from 7, complet... 48 0.47 1 (AC145553) Mus musculus BAC clone RP23-106M1 from 7, complet... 48 0.47 1 (AC127324) Mus musculus BAC clone RP23-244I2 from chromosome... 48 0.47 1 (AC126273) Mus musculus BAC clone RP23-99P15 from 7, complet... 48 0.47 1 (AC113151) Homo sapiens BAC clone RP11-58N10 from 4, complet... 48 0.47 1 (AC013523) Homo sapiens clone RP11-114H4, WORKING DRAFT SEQU... 48 0.47 1 (AC007799) Homo sapiens chromosome 4, *** SEQUENCING IN PROG... 48 0.47 1 (AZ344698) 1M0078D20R Mouse 10kb plasmid UUGC1M library Mus ... 48 0.47 1 (AM617862) Entamoeba invadens IP1 GSS, clone inv104a04.q1k. 48 0.47 1 (EI478290) PV_GBa0089M23.f PV_GBa Phaseolus vulgaris genomic... 48 0.47 1 (CD656551) AGENCOURT_14540196 NIA Human H1 Embryonic Stem Ce... 48 0.47 1 (BG564516) 602584984F1 NIH_MGC_76 Homo sapiens cDNA clone IM... 48 0.47 1 (AL844509) Plasmodium falciparum chromosome 13. 38 0.49 16 (CR628402) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.49 5 (AC068555) Homo sapiens chromosome 8 clone RP11-813M16, WORK... 42 0.57 5 (AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2... 34 0.59 10 (AC005506) Plasmodium falciparum chromosome 12 clone 3D7, **... 34 0.60 9 (AC188402) Callithrix jacchus chromosome UNK clone CH259-101... 38 0.63 6 (AC230399) Bos taurus clone CH240-510B21, WORKING DRAFT SEQU... 44 0.63 6 (AL031745) Plasmodium falciparum DNA from MAL1P2. 38 0.66 14 (AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 34 0.66 10 (AF250284) Amsacta moorei entomopoxvirus, complete genome. 30 0.74 11 (DN236955) EST00080 BmP Bombyx mori cDNA clone Bmps30_LYL-04... 36 0.76 3 (CO596994) DG8-139c8 DG8-testis Canis lupus familiaris cDNA ... 36 0.84 2 (AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 32 0.85 11 (CU633224) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.90 6 (ET984141) CHO_OF127xp09r1.ab1 CHO_OF Nicotiana tabacum geno... 38 0.96 2 (BX571857) Staphylococcus aureus strain MSSA476, complete ge... 46 1.0 20 (AC223084) Bos taurus clone CH240-430D9, WORKING DRAFT SEQUE... 40 1.0 7 (AC036136) Homo sapiens chromosome 13 clone RP11-191M14 map ... 40 1.1 6 (AE017263) Mesoplasma florum L1 complete genome. 40 1.2 14 (AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5... 38 1.2 11 (AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 46 1.3 11 (EK200710) 1095460055733 Global-Ocean-Sampling_GS-31-01-01-1... 38 1.3 2 (AL360354) Plasmodium vivax telomeric YAC clone, complete fi... 34 1.3 8 (EK239122) 1095460214574 Global-Ocean-Sampling_GS-31-01-01-1... 42 1.3 2 (AC232018) Solanum tuberosum strain Diploid genotype RH89-03... 32 1.3 8 (EJ390340) 1092963915201 Global-Ocean-Sampling_GS-28-01-01-1... 34 1.4 3 (AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 32 1.4 11 (AE001419) Plasmodium falciparum 3D7 chromosome 2 section 56... 34 1.4 4 (AC123245) Rattus norvegicus clone CH230-247L2, WORKING DRAF... 42 1.4 3 (ER920025) MUGQ_CH252P276H24T7_CN584_090 CHORI-252 Vervet Mo... 32 1.4 3 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 1.4 13 (AC232024) Solanum tuberosum strain Diploid genotype RH89-03... 34 1.5 7 (AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 34 1.5 11 (CP000825) Prochlorococcus marinus str. MIT 9215, complete g... 34 1.5 19 (AB047253) Carabus kuznetzovi mitochondrial ND5 gene for NAD... 38 1.5 2 (AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s... 30 1.6 10 (AJ293568) Yaba-like disease virus (YLDV), complete genome. 38 1.7 5 (AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2... 32 1.7 13 (BX293994) Zebrafish DNA sequence from clone DKEY-256K14 in ... 40 1.8 5 (AC026490) Homo sapiens clone RP11-30N7, WORKING DRAFT SEQUE... 34 1.8 7 (AL035476) Plasmodium falciparum MAL4P3. 34 1.8 10 (BX548245) Zebrafish DNA sequence from clone CH211-273N7 in ... 46 1.9 1 (BX470130) Zebrafish DNA sequence from clone DKEY-270I2 in l... 46 1.9 1 (AC139110) Danio rerio strain Tue clone CH211-154N18, comple... 46 1.9 1
>(BJ434289) Dictyostelium discoideum cDNA clone:ddv16n08, 3' end, single read. Length = 722
Score = 878 bits (443), Expect(3) = 0.0 Identities = 443/443 (100%) Strand = Plus / Minus
Query: 40 aatagtaatatttgtatcaatttaagtaatgatatttatttattggattatgaatcctta 99 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 691 aatagtaatatttgtatcaatttaagtaatgatatttatttattggattatgaatcctta 632
Query: 100 ttttgggttaaatgccaagcatcaggaactcaaccaaaaccaagacattctcattttgtt 159 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 631 ttttgggttaaatgccaagcatcaggaactcaaccaaaaccaagacattctcattttgtt 572
Query: 160 catcaaatttcaaatgatacaatattattatttggtggaattggtgataatgggcaaatt 219 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 571 catcaaatttcaaatgatacaatattattatttggtggaattggtgataatgggcaaatt 512
Query: 220 tattctgatgttcatttattaaatttatcaaatcaaaatacattaaaatggacacaacca 279 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 511 tattctgatgttcatttattaaatttatcaaatcaaaatacattaaaatggacacaacca 452
Query: 280 aatgtatttggaacaatttttaatttaaaagataaagattataaagtttgttttagtaat 339 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 451 aatgtatttggaacaatttttaatttaaaagataaagattataaagtttgttttagtaat 392
Query: 340 ggaattttatggataattatatcggaatgtatggaaatgtataaaatggatattaataca 399 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 391 ggaattttatggataattatatcggaatgtatggaaatgtataaaatggatattaataca 332
Query: 400 ttccgttggagtccagttatttacaatggtaatttcccacatggcggttttttgagtgaa 459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 331 ttccgttggagtccagttatttacaatggtaatttcccacatggcggttttttgagtgaa 272
Query: 460 tatactttgattggtggctgttt 482 ||||||||||||||||||||||| Sbjct: 271 tatactttgattggtggctgttt 249
Score = 408 bits (206), Expect(3) = 0.0 Identities = 206/206 (100%) Strand = Plus / Minus
Query: 482 tgttttggaaatatcattttattattagtagagaatgaaatattcttttttgatactgtc 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 253 tgttttggaaatatcattttattattagtagagaatgaaatattcttttttgatactgtc 194
Query: 542 actttggaatggggtgaattagaagttgatggtggtgaaagaccaatgaaaagaaaatat 601 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 193 actttggaatggggtgaattagaagttgatggtggtgaaagaccaatgaaaagaaaatat 134
Query: 602 cactctatctctgtaattgatacaatgttaattgtagttggtggccaaactgaattacca 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133 cactctatctctgtaattgatacaatgttaattgtagttggtggccaaactgaattacca 74
Query: 662 ttatcaacaatttcaactagagatat 687 |||||||||||||||||||||||||| Sbjct: 73 ttatcaacaatttcaactagagatat 48
Score = 75.8 bits (38), Expect(3) = 0.0 Identities = 38/38 (100%) Strand = Plus / Minus
Query: 699 atcttagaccattattcattaaaaagaaaattataaaa 736 |||||||||||||||||||||||||||||||||||||| Sbjct: 38 atcttagaccattattcattaaaaagaaaattataaaa 1
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,106,502,117 Number of extensions: 79290106 Number of successful extensions: 6939121 Number of sequences better than 10.0: 391 Length of query: 737 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 713 Effective length of database: 97,308,875,965 Effective search space: 69381228563045 Effective search space used: 69381228563045 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 7 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |