Contig-U13495-1
Contig ID Contig-U13495-1
Contig update 2002.12.18
Contig sequence
>Contig-U13495-1 (Contig-U13495-1Q) /CSM_Contig/Contig-U13495-1Q.Seq.d
AATAATAATAATAATAACAGAGGAGGTAACAGTAATAGCAATAGTAATAT
TTGTATCAATTTAAGTAATGATATTTATTTATTGGATTATGAATCCTTAT
TTTGGGTTAAATGCCAAGCATCAGGAACTCAACCAAAACCAAGACATTCT
CATTTTGTTCATCAAATTTCAAATGATACAATATTATTATTTGGTGGAAT
TGGTGATAATGGGCAAATTTATTCTGATGTTCATTTATTAAATTTATCAA
ATCAAAATACATTAAAATGGACACAACCAAATGTATTTGGAACAATTTTT
AATTTAAAAGATAAAGATTATAAAGTTTGTTTTAGTAATGGAATTTTATG
GATAATTATATCGGAATGTATGGAAATGTATAAAATGGATATTAATACAT
TCCGTTGGAGTCCAGTTATTTACAATGGTAATTTCCCACATGGCGGTTTT
TTGAGTGAATATACTTTGATTGGTGGCTGTTTGTTTTGGAAATATCATTT
TATTATTAGTAGAGAATGAAATATTCTTTTTTGATACTGTCACTTTGGAA
TGGGGTGAATTAGAAGTTGATGGTGGTGAAAGACCAATGAAAAGAAAATA
TCACTCTATCTCTGTAATTGATACAATGTTAATTGTAGTTGGTGGCCAAA
CTGAATTACCATTATCAACAATTTCAACTAGAGATATTGAAATGATTGAT
CTTAGACCATTATTCATTAAAAAGAAAATTATAAAAT

Gap no gap
Contig length 737
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 663260
End point 662523
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U13495
List of clone(s)

est1=SSG653E,1,738
est2=VFH831Z,9,736
Translated Amino Acid sequence
NNNNNNRGGNSNSNSNICINLSNDIYLLDYESLFWVKCQASGTQPKPRHSHFVHQISNDT
ILLFGGIGDNGQIYSDVHLLNLSNQNTLKWTQPNVFGTIFNLKDKDYKVCFSNGILWIII
SECMEMYKMDINTFRWSPVIYNGNFPHGGFLSEYTLIGGCLFWKYHFIISRE*nilf*yc
hfgmg*irs*ww*ktnekkislylcn*ynvncswwpn*itiinnfn*ry*nd*s*tiih*
kenyk


Translated Amino Acid sequence (All Frames)
Frame A:
NNNNNNRGGNSNSNSNICINLSNDIYLLDYESLFWVKCQASGTQPKPRHSHFVHQISNDT
ILLFGGIGDNGQIYSDVHLLNLSNQNTLKWTQPNVFGTIFNLKDKDYKVCFSNGILWIII
SECMEMYKMDINTFRWSPVIYNGNFPHGGFLSEYTLIGGCLFWKYHFIISRE*nilf*yc
hfgmg*irs*ww*ktnekkislylcn*ynvncswwpn*itiinnfn*ry*nd*s*tiih*
kenyk


Frame B:
iiiiiteevtviaivifvsi*vmifiywimnpyfglnakhqelnqnqdililfikfqmiq
yyylvelvimgkfilmfiy*iyqikih*nghnqmyleqfli*kikiikfvlvmefyg*ly
rnvwkcikwilihsvgvqlftmvishmavf*vnil*lvavcfgniilllveneifffdtv
tlewgelevdggerpmkrkyhsisvidtmlivvggqtelplstistrdiemidlrplfik
kkiik


Frame C:
*****qrr*q**q**ylyqfk**ylfigl*ililg*mpsirnstktktfsfcssnfk*yn
iiiwwnw**wanlf*csfikfikskyikmdttkciwnnf*fkr*rl*slf**wnfmdnyi
gmygnv*ngy*yiplessylqw*fptwrffe*iyfdwwlfvleisfyy**rmkysflils
lwngvn*klmvvkdq*kenitlsl*liqc*l*lvaklnyhyqqfqleilk*lildhyslk
rkl*n


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U13495-1 (Contig-U13495-1Q)
/CSM_Contig/Contig-U13495-1Q.Seq.d
(737 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U13495-1 (Contig-U13495-1Q) /CSM_Contig/Conti... 1427 0.0
Contig-U01609-1 (Contig-U01609-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U09475-1 (Contig-U09475-1Q) /CSM_Contig/Conti... 38 0.013
Contig-U01636-1 (Contig-U01636-1Q) /CSM_Contig/Conti... 38 0.013
Contig-U14192-1 (Contig-U14192-1Q) /CSM_Contig/Conti... 36 0.052
Contig-U12715-1 (Contig-U12715-1Q) /CSM_Contig/Conti... 36 0.052
Contig-U12496-1 (Contig-U12496-1Q) /CSM_Contig/Conti... 36 0.052
Contig-U12087-1 (Contig-U12087-1Q) /CSM_Contig/Conti... 36 0.052
Contig-U09773-1 (Contig-U09773-1Q) /CSM_Contig/Conti... 36 0.052
Contig-U09766-1 (Contig-U09766-1Q) /CSM_Contig/Conti... 36 0.052

>Contig-U13495-1 (Contig-U13495-1Q) /CSM_Contig/Contig-U13495-1Q.Seq.d
Length = 737

Score = 1427 bits (720), Expect = 0.0
Identities = 720/720 (100%)
Strand = Plus / Plus


Query: 18 cagaggaggtaacagtaatagcaatagtaatatttgtatcaatttaagtaatgatattta 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 cagaggaggtaacagtaatagcaatagtaatatttgtatcaatttaagtaatgatattta 77


Query: 78 tttattggattatgaatccttattttgggttaaatgccaagcatcaggaactcaaccaaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 tttattggattatgaatccttattttgggttaaatgccaagcatcaggaactcaaccaaa 137


Query: 138 accaagacattctcattttgttcatcaaatttcaaatgatacaatattattatttggtgg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 accaagacattctcattttgttcatcaaatttcaaatgatacaatattattatttggtgg 197


Query: 198 aattggtgataatgggcaaatttattctgatgttcatttattaaatttatcaaatcaaaa 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 aattggtgataatgggcaaatttattctgatgttcatttattaaatttatcaaatcaaaa 257


Query: 258 tacattaaaatggacacaaccaaatgtatttggaacaatttttaatttaaaagataaaga 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tacattaaaatggacacaaccaaatgtatttggaacaatttttaatttaaaagataaaga 317


Query: 318 ttataaagtttgttttagtaatggaattttatggataattatatcggaatgtatggaaat 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttataaagtttgttttagtaatggaattttatggataattatatcggaatgtatggaaat 377


Query: 378 gtataaaatggatattaatacattccgttggagtccagttatttacaatggtaatttccc 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtataaaatggatattaatacattccgttggagtccagttatttacaatggtaatttccc 437


Query: 438 acatggcggttttttgagtgaatatactttgattggtggctgtttgttttggaaatatca 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 acatggcggttttttgagtgaatatactttgattggtggctgtttgttttggaaatatca 497


Query: 498 ttttattattagtagagaatgaaatattcttttttgatactgtcactttggaatggggtg 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttttattattagtagagaatgaaatattcttttttgatactgtcactttggaatggggtg 557


Query: 558 aattagaagttgatggtggtgaaagaccaatgaaaagaaaatatcactctatctctgtaa 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aattagaagttgatggtggtgaaagaccaatgaaaagaaaatatcactctatctctgtaa 617


Query: 618 ttgatacaatgttaattgtagttggtggccaaactgaattaccattatcaacaatttcaa 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ttgatacaatgttaattgtagttggtggccaaactgaattaccattatcaacaatttcaa 677


Query: 678 ctagagatattgaaatgattgatcttagaccattattcattaaaaagaaaattataaaat 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ctagagatattgaaatgattgatcttagaccattattcattaaaaagaaaattataaaat 737


>Contig-U01609-1 (Contig-U01609-1Q) /CSM_Contig/Contig-U01609-1Q.Seq.d
Length = 1245

Score = 40.1 bits (20), Expect = 0.003
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 27 taacagtaatagcaatagtaatat 50
|||||||||||||||||| |||||
Sbjct: 107 taacagtaatagcaatagaaatat 130


>Contig-U09475-1 (Contig-U09475-1Q) /CSM_Contig/Contig-U09475-1Q.Seq.d
Length = 942

Score = 38.2 bits (19), Expect = 0.013
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 649 aactgaattaccattatcaacaa 671
|||||||||||||||| ||||||
Sbjct: 690 aactgaattaccattaccaacaa 712


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,348
Number of Sequences: 6905
Number of extensions: 22348
Number of successful extensions: 2379
Number of sequences better than 10.0: 268
length of query: 737
length of database: 5,674,871
effective HSP length: 16
effective length of query: 721
effective length of database: 5,564,391
effective search space: 4011925911
effective search space used: 4011925911
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.10
Homology vs DNA
Query= Contig-U13495-1 (Contig-U13495-1Q) /CSM_Contig/Contig-U13495-1Q.Seq.d
(737 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ434289) Dictyostelium discoideum cDNA clone:ddv16n08, 3' ... 878 0.0 3
(C84826) Dictyostelium discoideum slug cDNA, clone SSG653. 537 0.0 2
(AU073315) Dictyostelium discoideum slug cDNA, clone SSG653. 442 e-120 1
(BJ413629) Dictyostelium discoideum cDNA clone:ddv16n08, 5' ... 64 8e-06 1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 38 0.002 12
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 40 0.006 9
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 32 0.006 17
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 36 0.008 10
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 36 0.010 14
(CP000538) Campylobacter jejuni subsp. jejuni 81-176, comple... 38 0.018 2
(DQ493923) Campylobacter jejuni subsp. jejuni 81-176 probabl... 38 0.023 2
(AY920336) Campylobacter jejuni hypothetical protein (CJB152... 38 0.023 2
(AY681264) Campylobacter jejuni isolate Contig_101 Cj81-068 ... 38 0.023 2
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ... 38 0.027 10
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 34 0.031 10
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6... 32 0.045 12
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s... 30 0.071 14
(EF420157) Tanapox virus isolate TPV-RoC, complete genome. 38 0.090 6
(EF420156) Tanapox virus isolate TPV-Kenya, complete genome. 38 0.090 6
(CP000727) Clostridium botulinum A str. Hall, complete genome. 36 0.100 15
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 32 0.10 14
(Z97348) Plasmodium falciparum MAL3P1. 40 0.12 8
(ED248448) AUAC-aad06d04.g1 Ascaris suum whole genome shotgu... 50 0.12 1
(CZ106325) OM__Ba0116D13.r OM__Ba Oryza minuta genomic clone... 50 0.12 1
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 36 0.13 15
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 36 0.14 15
(BX548174) Prochlorococcus marinus MED4 complete genome. 34 0.14 19
(AL773593) Zebrafish DNA sequence from clone CH211-202N20 in... 40 0.16 5
(BI815167) PfESToaa15c06.y1 Plasmodium falciparum 3D7 asexua... 46 0.21 2
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 38 0.22 10
(AE017245) Mycoplasma synoviae 53, complete genome. 34 0.30 12
(ET660122) MUGQ_CH252P446G24T7_CP856_090 CHORI-252 Vervet Mo... 46 0.30 2
(CR548632) Zebrafish DNA sequence from clone DKEY-175H17 in ... 36 0.33 5
(CX575084) TTE00031531 Amplicon Express - Conjugative Form T... 38 0.34 3
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 32 0.35 18
(AM662001) Entamoeba moshkovskii FIC GSS, clone mosh116e11.q1k. 32 0.37 3
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 38 0.37 15
(AC139653) Rattus norvegicus clone CH230-304M11, WORKING DRA... 38 0.40 7
(AC189268) Brassica rapa subsp. pekinensis clone KBrB022P06,... 38 0.40 8
(AC126649) Rattus norvegicus clone CH230-134G15, WORKING DRA... 38 0.45 6
(CP000743) Methanococcus aeolicus Nankai-3, complete genome. 32 0.46 19
(AC171001) Mus musculus BAC clone RP23-317I13 from chromosom... 48 0.47 1
(AC157595) Mus musculus BAC clone RP23-238F18 from chromosom... 48 0.47 1
(AC156566) Mus musculus BAC clone RP23-337B16 from chromosom... 48 0.47 1
(AC150684) Mus musculus BAC clone RP23-268G6 from 7, complet... 48 0.47 1
(AC145553) Mus musculus BAC clone RP23-106M1 from 7, complet... 48 0.47 1
(AC127324) Mus musculus BAC clone RP23-244I2 from chromosome... 48 0.47 1
(AC126273) Mus musculus BAC clone RP23-99P15 from 7, complet... 48 0.47 1
(AC113151) Homo sapiens BAC clone RP11-58N10 from 4, complet... 48 0.47 1
(AC013523) Homo sapiens clone RP11-114H4, WORKING DRAFT SEQU... 48 0.47 1
(AC007799) Homo sapiens chromosome 4, *** SEQUENCING IN PROG... 48 0.47 1
(AZ344698) 1M0078D20R Mouse 10kb plasmid UUGC1M library Mus ... 48 0.47 1
(AM617862) Entamoeba invadens IP1 GSS, clone inv104a04.q1k. 48 0.47 1
(EI478290) PV_GBa0089M23.f PV_GBa Phaseolus vulgaris genomic... 48 0.47 1
(CD656551) AGENCOURT_14540196 NIA Human H1 Embryonic Stem Ce... 48 0.47 1
(BG564516) 602584984F1 NIH_MGC_76 Homo sapiens cDNA clone IM... 48 0.47 1
(AL844509) Plasmodium falciparum chromosome 13. 38 0.49 16
(CR628402) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.49 5
(AC068555) Homo sapiens chromosome 8 clone RP11-813M16, WORK... 42 0.57 5
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2... 34 0.59 10
(AC005506) Plasmodium falciparum chromosome 12 clone 3D7, **... 34 0.60 9
(AC188402) Callithrix jacchus chromosome UNK clone CH259-101... 38 0.63 6
(AC230399) Bos taurus clone CH240-510B21, WORKING DRAFT SEQU... 44 0.63 6
(AL031745) Plasmodium falciparum DNA from MAL1P2. 38 0.66 14
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 34 0.66 10
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 30 0.74 11
(DN236955) EST00080 BmP Bombyx mori cDNA clone Bmps30_LYL-04... 36 0.76 3
(CO596994) DG8-139c8 DG8-testis Canis lupus familiaris cDNA ... 36 0.84 2
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 32 0.85 11
(CU633224) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.90 6
(ET984141) CHO_OF127xp09r1.ab1 CHO_OF Nicotiana tabacum geno... 38 0.96 2
(BX571857) Staphylococcus aureus strain MSSA476, complete ge... 46 1.0 20
(AC223084) Bos taurus clone CH240-430D9, WORKING DRAFT SEQUE... 40 1.0 7
(AC036136) Homo sapiens chromosome 13 clone RP11-191M14 map ... 40 1.1 6
(AE017263) Mesoplasma florum L1 complete genome. 40 1.2 14
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5... 38 1.2 11
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 46 1.3 11
(EK200710) 1095460055733 Global-Ocean-Sampling_GS-31-01-01-1... 38 1.3 2
(AL360354) Plasmodium vivax telomeric YAC clone, complete fi... 34 1.3 8
(EK239122) 1095460214574 Global-Ocean-Sampling_GS-31-01-01-1... 42 1.3 2
(AC232018) Solanum tuberosum strain Diploid genotype RH89-03... 32 1.3 8
(EJ390340) 1092963915201 Global-Ocean-Sampling_GS-28-01-01-1... 34 1.4 3
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 32 1.4 11
(AE001419) Plasmodium falciparum 3D7 chromosome 2 section 56... 34 1.4 4
(AC123245) Rattus norvegicus clone CH230-247L2, WORKING DRAF... 42 1.4 3
(ER920025) MUGQ_CH252P276H24T7_CN584_090 CHORI-252 Vervet Mo... 32 1.4 3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 1.4 13
(AC232024) Solanum tuberosum strain Diploid genotype RH89-03... 34 1.5 7
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 34 1.5 11
(CP000825) Prochlorococcus marinus str. MIT 9215, complete g... 34 1.5 19
(AB047253) Carabus kuznetzovi mitochondrial ND5 gene for NAD... 38 1.5 2
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s... 30 1.6 10
(AJ293568) Yaba-like disease virus (YLDV), complete genome. 38 1.7 5
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2... 32 1.7 13
(BX293994) Zebrafish DNA sequence from clone DKEY-256K14 in ... 40 1.8 5
(AC026490) Homo sapiens clone RP11-30N7, WORKING DRAFT SEQUE... 34 1.8 7
(AL035476) Plasmodium falciparum MAL4P3. 34 1.8 10
(BX548245) Zebrafish DNA sequence from clone CH211-273N7 in ... 46 1.9 1
(BX470130) Zebrafish DNA sequence from clone DKEY-270I2 in l... 46 1.9 1
(AC139110) Danio rerio strain Tue clone CH211-154N18, comple... 46 1.9 1

>(BJ434289) Dictyostelium discoideum cDNA clone:ddv16n08, 3' end,
single read.
Length = 722

Score = 878 bits (443), Expect(3) = 0.0
Identities = 443/443 (100%)
Strand = Plus / Minus


Query: 40 aatagtaatatttgtatcaatttaagtaatgatatttatttattggattatgaatcctta 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aatagtaatatttgtatcaatttaagtaatgatatttatttattggattatgaatcctta 632


Query: 100 ttttgggttaaatgccaagcatcaggaactcaaccaaaaccaagacattctcattttgtt 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ttttgggttaaatgccaagcatcaggaactcaaccaaaaccaagacattctcattttgtt 572


Query: 160 catcaaatttcaaatgatacaatattattatttggtggaattggtgataatgggcaaatt 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 catcaaatttcaaatgatacaatattattatttggtggaattggtgataatgggcaaatt 512


Query: 220 tattctgatgttcatttattaaatttatcaaatcaaaatacattaaaatggacacaacca 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tattctgatgttcatttattaaatttatcaaatcaaaatacattaaaatggacacaacca 452


Query: 280 aatgtatttggaacaatttttaatttaaaagataaagattataaagtttgttttagtaat 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aatgtatttggaacaatttttaatttaaaagataaagattataaagtttgttttagtaat 392


Query: 340 ggaattttatggataattatatcggaatgtatggaaatgtataaaatggatattaataca 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ggaattttatggataattatatcggaatgtatggaaatgtataaaatggatattaataca 332


Query: 400 ttccgttggagtccagttatttacaatggtaatttcccacatggcggttttttgagtgaa 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttccgttggagtccagttatttacaatggtaatttcccacatggcggttttttgagtgaa 272


Query: 460 tatactttgattggtggctgttt 482
|||||||||||||||||||||||
Sbjct: 271 tatactttgattggtggctgttt 249

Score = 408 bits (206), Expect(3) = 0.0
Identities = 206/206 (100%)
Strand = Plus / Minus


Query: 482 tgttttggaaatatcattttattattagtagagaatgaaatattcttttttgatactgtc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tgttttggaaatatcattttattattagtagagaatgaaatattcttttttgatactgtc 194


Query: 542 actttggaatggggtgaattagaagttgatggtggtgaaagaccaatgaaaagaaaatat 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 actttggaatggggtgaattagaagttgatggtggtgaaagaccaatgaaaagaaaatat 134


Query: 602 cactctatctctgtaattgatacaatgttaattgtagttggtggccaaactgaattacca 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 cactctatctctgtaattgatacaatgttaattgtagttggtggccaaactgaattacca 74


Query: 662 ttatcaacaatttcaactagagatat 687
||||||||||||||||||||||||||
Sbjct: 73 ttatcaacaatttcaactagagatat 48

Score = 75.8 bits (38), Expect(3) = 0.0
Identities = 38/38 (100%)
Strand = Plus / Minus


Query: 699 atcttagaccattattcattaaaaagaaaattataaaa 736
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 atcttagaccattattcattaaaaagaaaattataaaa 1

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,106,502,117
Number of extensions: 79290106
Number of successful extensions: 6939121
Number of sequences better than 10.0: 391
Length of query: 737
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 713
Effective length of database: 97,308,875,965
Effective search space: 69381228563045
Effective search space used: 69381228563045
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 7
Homology vs Protein
Query= Contig-U13495-1 (Contig-U13495-1Q) /CSM_Contig/Contig-U13495-1Q.Seq.d
(737 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

S68824(S68824)rngB protein, cytosolic - slime mold (Dictyosteliu... 75 2e-12
(Q7M3S9) RecName: Full=RING finger protein B; Short=Pro... 75 2e-12
BT083991_1(BT083991|pid:none) Zea mays full-length cDNA clone ZM... 57 2e-10
AM440167_1(AM440167|pid:none) Vitis vinifera contig VV78X156992.... 65 2e-09
AP003578_15(AP003578|pid:none) Oryza sativa Japonica Group genom... 57 5e-07
EU956778_1(EU956778|pid:none) Zea mays clone 1573668 kelch motif... 56 1e-06
BT060837_1(BT060837|pid:none) Zea mays full-length cDNA clone ZM... 56 1e-06
BT070350_1(BT070350|pid:none) Picea sitchensis clone WS02721_L10... 56 1e-06
AK100499_1(AK100499|pid:none) Oryza sativa Japonica Group cDNA c... 54 5e-06
AF412043_1(AF412043|pid:none) Arabidopsis thaliana AT5g04420/T32... 54 5e-06
AK317314_1(AK317314|pid:none) Arabidopsis thaliana AT5G04420 mRN... 54 5e-06
AJ566620_1(AJ566620|pid:none) Paramecium tetraurelia macronuclea... 44 7e-06
BT066948_1(BT066948|pid:none) Zea mays full-length cDNA clone ZM... 54 7e-06
BT065676_1(BT065676|pid:none) Zea mays full-length cDNA clone ZM... 52 3e-05
EU973128_1(EU973128|pid:none) Zea mays clone 393745 unknown mRNA. 50 7e-05
BT061032_1(BT061032|pid:none) Zea mays full-length cDNA clone ZM... 50 7e-05
AM437230_1(AM437230|pid:none) Vitis vinifera contig VV78X027677.... 50 1e-04
(Q8H4D4) RecName: Full=tRNA wybutosine-synthesizing protein 2/3/... 37 1e-04
BX842633_2(BX842633|pid:none) Neurospora crassa DNA linkage grou... 49 2e-04
(Q6AYI2) RecName: Full=Kelch domain-containing protein 3; &BC07... 49 2e-04
(Q58CV6) RecName: Full=Kelch domain-containing protein 3; &BC10... 48 3e-04
BT021774_1(BT021774|pid:none) Bos taurus kelch domain containing... 48 3e-04
AK004964_1(AK004964|pid:none) Mus musculus adult male liver cDNA... 47 6e-04
CR548612_211(CR548612|pid:none) Paramecium tetraurelia macronucl... 47 6e-04
CR956379_15(CR956379|pid:none) Pig DNA sequence from clone CH242... 47 8e-04
CR956379_13(CR956379|pid:none) Pig DNA sequence from clone CH242... 47 8e-04
CR956379_16(CR956379|pid:none) Pig DNA sequence from clone CH242... 47 8e-04
(Q9BQ90) RecName: Full=Kelch domain-containing protein 3; AltNam... 46 0.001
BC009460_1(BC009460|pid:none) Homo sapiens kelch domain containi... 46 0.001
CR954216_283(CR954216|pid:none) Ostreococcus tauri strain OTTH05... 45 0.002
AE014298_1261(AE014298|pid:none) Drosophila melanogaster chromos... 45 0.002
(O14248) RecName: Full=Tip elongation aberrant protein 3; AltNam... 45 0.002
CP001323_735(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 45 0.002
BC082451_1(BC082451|pid:none) Xenopus laevis MGC84191 protein, m... 45 0.002
AL929106_6(AL929106|pid:none) Mouse DNA sequence from clone RP23... 45 0.003
AK317016_1(AK317016|pid:none) Arabidopsis thaliana AT2G36360 mRN... 44 0.004
AM270075_11(AM270075|pid:none) Aspergillus niger contig An04c014... 44 0.004
BC012987_1(BC012987|pid:none) Homo sapiens kelch domain containi... 44 0.005
AK316853_1(AK316853|pid:none) Arabidopsis thaliana AT5G18590 mRN... 44 0.007
BT055017_1(BT055017|pid:none) Zea mays full-length cDNA clone ZM... 44 0.007
BT038562_1(BT038562|pid:none) Zea mays full-length cDNA clone ZM... 43 0.009
AC092557_12(AC092557|pid:none) Oryza sativa chromosome 3 BAC OSJ... 43 0.009
AK226209_1(AK226209|pid:none) Arabidopsis thaliana mRNA for RanG... 43 0.012
AX405888_1(AX405888|pid:none) Sequence 303 from Patent WO0222660. 43 0.012
AK055598_1(AK055598|pid:none) Homo sapiens cDNA FLJ31036 fis, cl... 43 0.012
AB037753_1(AB037753|pid:none) Homo sapiens mRNA for KIAA1332 pro... 43 0.012
(Q6P3S6) RecName: Full=F-box only protein 42; &AB384595_1(AB384... 43 0.012
BC043410_1(BC043410|pid:none) Homo sapiens F-box protein 42, mRN... 43 0.012
BT054403_1(BT054403|pid:none) Zea mays full-length cDNA clone ZM... 42 0.026
AY160095_1(AY160095|pid:none) Dictyostelium discoideum nucleotid... 42 0.026
BC062489_1(BC062489|pid:none) Xenopus tropicalis kelch domain co... 42 0.026
BC047023_1(BC047023|pid:none) Homo sapiens Rab9 effector protein... 41 0.034
BT069267_1(BT069267|pid:none) Zea mays full-length cDNA clone ZM... 41 0.034
AK151503_1(AK151503|pid:none) Mus musculus bone marrow macrophag... 41 0.045
BC003960_1(BC003960|pid:none) Mus musculus F-box protein 42, mRN... 41 0.045
AK170202_1(AK170202|pid:none) Mus musculus NOD-derived CD11c +ve... 41 0.045
AK150804_1(AK150804|pid:none) Mus musculus bone marrow macrophag... 41 0.045
BC068372_1(BC068372|pid:none) Danio rerio zgc:85727, mRNA (cDNA ... 41 0.045
AC115604_14(AC115604|pid:none) Dictyostelium discoideum chromoso... 40 0.058
AL844591_2(AL844591|pid:none) Mouse DNA sequence from clone RP23... 40 0.058
(Q9LR78) RecName: Full=Serine/threonine-protein phosphatase BSU1... 40 0.076
CR954205_200(CR954205|pid:none) Ostreococcus tauri strain OTTH05... 40 0.076
Z97074_1(Z97074|pid:none) Homo sapiens mRNA for Rab9 effector p4... 40 0.099
BC073038_1(BC073038|pid:none) Xenopus laevis MGC82652 protein, m... 40 0.099
BC065725_1(BC065725|pid:none) Homo sapiens Rab9 effector protein... 40 0.099
CR456837_1(CR456837|pid:none) Homo sapiens full open reading fra... 40 0.099
BC056132_1(BC056132|pid:none) Xenopus laevis kelch domain contai... 40 0.099
AC079678_5(AC079678|pid:none) Arabidopsis thaliana chromosome 1 ... 40 0.099
CU633438_482(CU633438|pid:none) Podospora anserina genomic DNA c... 39 0.13
CP000590_124(CP000590|pid:none) Ostreococcus lucimarinus CCE9901... 39 0.17
AJ851426_1(AJ851426|pid:none) Gallus gallus mRNA for hypothetica... 39 0.22
(Q2QM47) RecName: Full=Serine/threonine-protein phosphatase BSL2... 39 0.22
AJ437480_3(AJ437480|pid:none) Paramecium tetraurelia partial npe... 39 0.22
AL929106_7(AL929106|pid:none) Mouse DNA sequence from clone RP23... 39 0.22
(Q8VCH5) RecName: Full=Rab9 effector protein with Kelch motifs; ... 39 0.22
AC154090_8(AC154090|pid:none) Medicago truncatula clone mth2-92k... 38 0.29
AE013599_3555(AE013599|pid:none) Drosophila melanogaster chromos... 38 0.29
CP001159_136(CP001159|pid:none) Thalassiosira pseudonana CCMP133... 38 0.29
AK316968_1(AK316968|pid:none) Arabidopsis thaliana AT1G08420 mRN... 38 0.38
(Q60EX6) RecName: Full=Serine/threonine protein phosphatase BSL1... 38 0.38
(Q4V8F4) RecName: Full=Rab9 effector protein with Kelch motifs; ... 38 0.38
(Q5ZJ37) RecName: Full=Rab9 effector protein with Kelch motifs; ... 38 0.38
BC119567_1(BC119567|pid:none) Mus musculus kelch domain containi... 38 0.38
AK229113_1(AK229113|pid:none) Arabidopsis thaliana mRNA for puta... 37 0.49
AE014186_248(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 37 0.49
T29816(T29816)hypothetical protein C46A5.9 - Caenorhabditis eleg... 37 0.49
(Q9SHS7) RecName: Full=Serine/threonine-protein phosphatase BSL3... 37 0.49
AF072907_1(AF072907|pid:none) Caenorhabditis elegans host cell f... 37 0.49
AC007290_2(AC007290|pid:none) Arabidopsis thaliana chromosome 2 ... 37 0.49
AK132817_1(AK132817|pid:none) Mus musculus adult male testis cDN... 37 0.64
(Q9CQ33) RecName: Full=Leucine-zipper-like transcriptional regul... 37 0.64
(Q9H422) RecName: Full=Homeodomain-interacting protein kinase 3;... 37 0.64
AK083411_1(AK083411|pid:none) Mus musculus 9 days embryo whole b... 37 0.64
(Q8N653) RecName: Full=Leucine-zipper-like transcriptional regul... 37 0.64
AC130810_12(AC130810|pid:none) Medicago truncatula clone mth2-36... 37 0.84
(Q5R8W1) RecName: Full=Kelch domain-containing protein 4; &CR85... 37 0.84
AK051418_1(AK051418|pid:none) Mus musculus 12 days embryo spinal... 37 0.84
BC155757_1(BC155757|pid:none) Danio rerio si:dkey-98f17.2, mRNA ... 37 0.84
AP008209_3177(AP008209|pid:none) Oryza sativa (japonica cultivar... 37 0.84
BC159021_1(BC159021|pid:none) Xenopus tropicalis hypothetical pr... 36 1.1
CR940353_551(CR940353|pid:none) Theileria annulata strain Ankara... 36 1.1
CP001330_178(CP001330|pid:none) Micromonas sp. RCC299 chromosome... 36 1.1
BC011680_1(BC011680|pid:none) Homo sapiens kelch domain containi... 36 1.4
AM494965_235(AM494965|pid:none) Leishmania braziliensis chromoso... 36 1.4
AK023986_1(AK023986|pid:none) Homo sapiens cDNA FLJ13924 fis, cl... 36 1.4
AL133107_1(AL133107|pid:none) Homo sapiens mRNA; cDNA DKFZp434G0... 36 1.4
(Q8TBB5) RecName: Full=Kelch domain-containing protein 4; &BC02... 36 1.4
AC124957_27(AC124957|pid:none) Medicago truncatula clone mth2-15... 36 1.4
AK097097_1(AK097097|pid:none) Homo sapiens cDNA FLJ39778 fis, cl... 36 1.4
CP001575_225(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 36 1.4
AM502242_148(AM502242|pid:none) Leishmania infantum chromosome 24. 36 1.4
BC001044_1(BC001044|pid:none) Homo sapiens kelch domain containi... 36 1.4
FB884629_1(FB884629|pid:none) Sequence 103902 from Patent WO2008... 35 1.9
AK098735_1(AK098735|pid:none) Homo sapiens cDNA FLJ25869 fis, cl... 35 1.9
(Q9Y5Z7) RecName: Full=Host cell factor 2; Short=HCF-2;... 35 1.9
DQ371900_1(DQ371900|pid:none) Glycine max PAS protein ZEITLUPE 1... 35 1.9
(Q8L7U5) RecName: Full=Serine/threonine-protein phosphatase BSL1... 35 1.9
(P80197) RecName: Full=Actin-fragmin kinase; Short=AFK;... 35 1.9
AF069442_4(AF069442|pid:none) Arabidopsis thaliana BAC T4I9, chr... 35 1.9
(Q8N7A1) RecName: Full=Kelch domain-containing protein 1; &AF11... 35 1.9
CP001184_584(CP001184|pid:none) Ureaplasma urealyticum serovar 1... 35 2.4
(P15258) RecName: Full=Protein ral2; &A33827(A33827;T39887) &AL... 35 2.4
FM992688_14(FM992688|pid:none) Candida dubliniensis CD36 chromos... 35 2.4
(Q6AXB2) RecName: Full=Rab9 effector protein with Kelch motifs; ... 35 2.4
AM910991_292(AM910991|pid:none) Plasmodium knowlesi strain H chr... 35 2.4
BC012312_1(BC012312|pid:none) Mus musculus kelch domain containi... 35 3.2
AM494959_94(AM494959|pid:none) Leishmania braziliensis chromosom... 35 3.2
AY835383_1(AY835383|pid:none) Danio rerio kelch repeat-containin... 35 3.2
CR940353_481(CR940353|pid:none) Theileria annulata strain Ankara... 35 3.2
(Q921I2) RecName: Full=Kelch domain-containing protein 4; &BC02... 35 3.2
BX511265_17(BX511265|pid:none) Zebrafish DNA sequence from clone... 35 3.2
AE017344_264(AE017344|pid:none) Cryptococcus neoformans var. neo... 35 3.2
AM494961_217(AM494961|pid:none) Leishmania braziliensis chromoso... 35 3.2
AM920427_1649(AM920427|pid:none) Penicillium chrysogenum Wiscons... 35 3.2
AL672002_20(AL672002|pid:none) Mouse DNA sequence from clone RP2... 34 4.2
AK009481_1(AK009481|pid:none) Mus musculus adult male tongue cDN... 34 4.2
BC058359_1(BC058359|pid:none) Mus musculus kelch domain containi... 34 4.2
AL672002_21(AL672002|pid:none) Mouse DNA sequence from clone RP2... 34 4.2
AM427199_1(AM427199|pid:none) Vitis vinifera contig VV78X148195.... 34 4.2
AK175424_1(AK175424|pid:none) Arabidopsis thaliana mRNA, partial... 34 4.2
(Q3KRE6) RecName: Full=Kelch domain-containing protein 2; &BC10... 34 4.2
(Q61191) RecName: Full=Host cell factor; AltName: Full=HCF-1; ... 34 4.2
U80821_1(U80821|pid:none) Mus musculus C1 transcription factor g... 34 4.2
(Q4G5Y1) RecName: Full=Kelch domain-containing protein 2; AltNam... 34 4.2
BC153781_1(BC153781|pid:none) Xenopus laevis hypothetical protei... 34 4.2
BC082658_1(BC082658|pid:none) Xenopus laevis hypothetical LOC494... 34 4.2
AP008214_548(AP008214|pid:none) Oryza sativa (japonica cultivar-... 34 4.2
AY513272_1(AY513272|pid:none) Mus musculus endothelial different... 34 4.2
(Q6XHA6) RecName: Full=Probable inactive serine/threonine-protei... 34 5.4
AE016816_221(AE016816|pid:none) Ashbya gossypii (= Eremothecium ... 34 5.4
AC009176_17(AC009176|pid:none) Arabidopsis thaliana chromosome I... 34 5.4
A82878(A82878) replicative DNA helicase UU550 [imported] - Ureap... 34 5.4
CR382125_673(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 34 5.4
AB055250_1(AB055250|pid:none) Macaca fascicularis brain cDNA, cl... 34 5.4
AC117082_8(AC117082|pid:none) Dictyostelium discoideum chromosom... 34 5.4
CR457205_1(CR457205|pid:none) Homo sapiens full open reading fra... 34 5.4
CU633871_38(CU633871|pid:none) Podospora anserina genomic DNA ch... 33 7.1
AK038626_1(AK038626|pid:none) Mus musculus adult male hypothalam... 33 7.1
AL845479_3(AL845479|pid:none) Mouse DNA sequence from clone RP23... 33 7.1
BC166344_1(BC166344|pid:none) Xenopus tropicalis hypothetical pr... 33 7.1
AE010300_1758(AE010300|pid:none) Leptospira interrogans serovar ... 33 7.1
T21694(T21694)hypothetical protein F33C8.1 - Caenorhabditis eleg... 33 7.1
(Q19981) RecName: Full=Putative protein tag-53; Flags: Precursor... 33 7.1
AK054392_1(AK054392|pid:none) Mus musculus 2 days pregnant adult... 33 7.1
AP005578_9(AP005578|pid:none) Oryza sativa Japonica Group genomi... 33 7.1
BX571687_5(BX571687|pid:none) Zebrafish DNA sequence from clone ... 33 7.1
BC070638_1(BC070638|pid:none) Xenopus laevis hypothetical protei... 33 7.1
AC115607_4(AC115607|pid:none) Dictyostelium discoideum chromosom... 33 7.1
Z69790_3(Z69790|pid:none) Caenorhabditis elegans Cosmid F33C8, c... 33 7.1
BC139848_1(BC139848|pid:none) Danio rerio host cell factor C1a, ... 33 9.3
BC063435_1(BC063435|pid:none) Homo sapiens host cell factor C1 (... 33 9.3
(Q0VL94) RecName: Full=Ribose-5-phosphate isomerase A; ... 33 9.3
(P38853) RecName: Full=Kelch repeat-containing protein 1; &S467... 33 9.3
CU928170_819(CU928170|pid:none) Kluyveromyces thermotolerans str... 33 9.3
(O49326) RecName: Full=Nitrile-specifier protein 2; Sho... 33 9.3
(P51610) RecName: Full=Host cell factor; AltName: Full=HCF-1; ... 33 9.3
AL844506_243(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 33 9.3
X79198_1(X79198|pid:none) H.sapiens HCF-1 gene. 33 9.3
AY185118_1(AY185118|pid:none) Brassica rapa subsp. pekinensis F-... 33 9.3
CP000588_384(CP000588|pid:none) Ostreococcus lucimarinus CCE9901... 33 9.3

>S68824(S68824)rngB protein, cytosolic - slime mold (Dictyostelium
discoideum)
Length = 943

Score = 75.5 bits (184), Expect = 2e-12
Identities = 30/74 (40%), Positives = 44/74 (59%)
Frame = +1

Query: 70 DIYLLDYESLFWVKCQASGTQPKPRHSHFVHQISNDTILLFGGIGDNGQIYSDVHLLNLS 249
DIY LD E+ W K +A GT PKPR H I N+ +++FGG G + +D+H+L++
Sbjct: 207 DIYYLDLETWIWKKVEAKGTPPKPRSGHSATMIQNNKLMIFGGCGSSSNFLNDIHILHIE 266

Query: 250 NQNTLKWTQPNVFG 291
N +W QP+ G
Sbjct: 267 GANEYRWEQPSYLG 280

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,112,840,950
Number of extensions: 22201843
Number of successful extensions: 61967
Number of sequences better than 10.0: 180
Number of HSP's gapped: 61885
Number of HSP's successfully gapped: 236
Length of query: 245
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 120
Effective length of database: 646,610,989
Effective search space: 77593318680
Effective search space used: 77593318680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.78 gvh: 0.59 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for Contig-U13495-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0