| Contig-U13486-1 |
| Contig ID |
Contig-U13486-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
591 |
| Chromosome number (1..6, M) |
5 |
| Chromosome length |
5062330 |
| Start point |
4637082 |
| End point |
4637673 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
1 |
| Number of EST |
1 |
| Link to clone list |
U13486 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.12.10 |
| Homology vs DNA |
Query= Contig-U13486-1 (Contig-U13486-1Q) /CSM_Contig/Contig-U13486-1Q.Seq.d
(591 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ412998) Dictyostelium discoideum cDNA clone:ddv13c23, 5' ... 1172 0.0 1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 34 6e-04 12
(CV086486) CS_gil_41G01_M13Reverse Blue crab gill, normalize... 54 0.006 1
(AZ678570) ENTKY58TF Entamoeba histolytica Sheared DNA Entam... 36 0.007 3
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 36 0.007 9
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 38 0.010 11
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 44 0.014 10
(AZ684498) ENTHN01TR Entamoeba histolytica Sheared DNA Entam... 40 0.014 2
(AZ668971) ENTIC07TF Entamoeba histolytica Sheared DNA Entam... 40 0.015 2
(AC178049) Strongylocentrotus purpuratus clone R3-1117F14, W... 40 0.015 2
(BH146625) ENTQQ91TR Entamoeba histolytica Sheared DNA Entam... 40 0.016 2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 0.017 12
(DN920340) MCF7RNAL27P02TF Human MCF7 breast cancer cell lin... 52 0.023 1
(DN916719) MCF7RNAL22D02TF Human MCF7 breast cancer cell lin... 52 0.023 1
(DN915948) MCF7RNAL20P14TF Human MCF7 breast cancer cell lin... 52 0.023 1
(DN914259) MCF7RNAL18F22TF Human MCF7 breast cancer cell lin... 52 0.023 1
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 30 0.026 12
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 34 0.042 8
(EJ422355) 1093012239564 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.047 2
(EK465348) 1095469420414 Global-Ocean-Sampling_GS-32-01-01-1... 50 0.091 1
(EK464241) 1095469411870 Global-Ocean-Sampling_GS-32-01-01-1... 50 0.091 1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 0.10 14
(AC146790) Medicago truncatula clone mth2-123b21, complete s... 38 0.21 2
(AC111406) Rattus norvegicus clone CH230-158L13, *** SEQUENC... 38 0.21 6
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 36 0.25 20
(CU463922) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.27 6
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 32 0.34 18
(AC005506) Plasmodium falciparum chromosome 12 clone 3D7, **... 34 0.34 9
(AC188097) Pongo abelii chromosome UNK clone CH276-27H12, co... 48 0.36 1
(CQ602025) Sequence 29783 from Patent WO0171042. 48 0.36 1
(CQ602024) Sequence 29782 from Patent WO0171042. 48 0.36 1
(AE014298) Drosophila melanogaster chromosome X, complete se... 48 0.36 1
(AC012161) Drosophila melanogaster, chromosome X, region 16B... 48 0.36 1
(AC011703) Drosophila melanogaster, chromosome X, region 16A... 48 0.36 1
(AC011702) Drosophila melanogaster, chromosome X, region 15F... 48 0.36 1
(Z75889) Human DNA sequence from clone RP1-267P19 on chromos... 48 0.36 1
(AL353724) Human DNA sequence from clone RP11-448I13 on chro... 48 0.36 1
(AC093381) Homo sapiens BAC clone RP11-436J10 from 2, comple... 48 0.36 1
(AC084035) Homo sapiens 3 BAC RP11-153F10 (Roswell Park Canc... 48 0.36 1
(AC112323) Rattus norvegicus clone CH230-172G11, *** SEQUENC... 48 0.36 1
(AC106913) Rattus norvegicus clone CH230-10N2, WORKING DRAFT... 48 0.36 1
(AC106252) Rattus norvegicus clone CH230-102E21, *** SEQUENC... 48 0.36 1
(AC105610) Rattus norvegicus clone CH230-336B16, WORKING DRA... 48 0.36 1
(AC105471) Rattus norvegicus clone CH230-174H8, WORKING DRAF... 48 0.36 1
(AC103302) Rattus norvegicus clone CH230-9I22, *** SEQUENCIN... 48 0.36 1
(AC097694) Rattus norvegicus clone CH230-88C14, WORKING DRAF... 48 0.36 1
(AC095086) Rattus norvegicus clone CH230-7A16, *** SEQUENCIN... 48 0.36 1
(CU856215) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.36 1
(AC180076) Strongylocentrotus purpuratus clone R3-4008D24, W... 48 0.36 1
(AC176591) Strongylocentrotus purpuratus clone R3-3077L15, W... 48 0.36 1
(AC176238) Strongylocentrotus purpuratus clone R3-3061C03, W... 48 0.36 1
(AC016523) Drosophila melanogaster strain y chromosome X clo... 48 0.36 1
(AC014129) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 48 0.36 1
(FI057818) CHO_OF6615xm23f1.ab1 CHO_OF6 Nicotiana tabacum ge... 48 0.36 1
(BJ441165) Dictyostelium discoideum cDNA clone:ddv45j23, 3' ... 44 0.48 2
(AM443422) Vitis vinifera contig VV78X238243.5, whole genome... 42 0.49 2
(AW187621) BNLGHi8266 Six-day Cotton fiber Gossypium hirsutu... 42 0.56 2
(AM463261) Vitis vinifera contig VV78X050849.15, whole genom... 36 0.63 3
(BJ443396) Dictyostelium discoideum cDNA clone:ddv52e21, 3' ... 44 0.66 2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 40 0.67 10
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete... 34 0.71 15
(BJ438795) Dictyostelium discoideum cDNA clone:ddv38b16, 3' ... 44 0.72 2
(EJ241527) 1095328064282 Global-Ocean-Sampling_GS-27-01-01-1... 40 0.74 2
(AC179896) Strongylocentrotus purpuratus clone R3-1003P23, W... 32 0.75 2
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 32 0.76 8
(AC160570) Pan troglodytes BAC clone CH251-15C5 from chromos... 36 0.99 4
(ER495810) 1093015347191 Global-Ocean-Sampling_GS-35-01-01-1... 36 0.99 2
(ER572863) 1093015800222 Global-Ocean-Sampling_GS-36-01-01-2... 36 0.99 2
(EI881662) CAH1-65P18TV CAA1Ba Cicer arietinum genomic clone... 32 1.00 2
(CP001047) Mycoplasma arthritidis 158L3-1, complete genome. 32 1.0 15
(AL844506) Plasmodium falciparum chromosome 7. 32 1.1 16
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 32 1.2 11
(BX539336) Zebrafish DNA sequence from clone CH211-128H21 in... 44 1.3 5
(AC179541) Strongylocentrotus purpuratus clone R3-6K14, WORK... 44 1.4 4
(U05523) Human immunodeficiency virus type 1 clone 5BL3014 e... 46 1.4 1
(AC153515) Mus musculus 10 BAC RP23-425D13 (Roswell Park Can... 46 1.4 1
(AC124752) Mus musculus BAC clone RP23-283G18 from 13, compl... 46 1.4 1
(AC123530) Mus musculus BAC clone RP24-194D2 from chromosome... 46 1.4 1
(AP008217) Oryza sativa (japonica cultivar-group) genomic DN... 46 1.4 1
(AC120984) Oryza sativa (japonica cultivar-group) chromosome... 46 1.4 1
(AC120884) Oryza sativa (japonica cultivar-group) chromosome... 46 1.4 1
(EA684783) Sequence 63662 from patent US 7365185. 46 1.4 1
(AR549524) Sequence 4655 from patent US 6747137. 46 1.4 1
(AC158867) Bos taurus clone CH240-116F7, WORKING DRAFT SEQUE... 46 1.4 1
(AC154893) Bos taurus clone CH240-26P1, WORKING DRAFT SEQUEN... 46 1.4 1
(AC153396) Bos taurus clone CH240-19N4, WORKING DRAFT SEQUEN... 46 1.4 1
(AC094365) Rattus norvegicus clone CH230-3F12, *** SEQUENCIN... 46 1.4 1
(AC224709) Bos taurus clone CH240-478G16, WORKING DRAFT SEQU... 46 1.4 1
(AC221491) Bos taurus clone CH240-409N23, WORKING DRAFT SEQU... 46 1.4 1
(AC176485) Strongylocentrotus purpuratus clone R3-114M14, WO... 46 1.4 1
(AC174045) Bos taurus clone CH240-6I15, WORKING DRAFT SEQUEN... 46 1.4 1
(ER325720) 1092344210623 Global-Ocean-Sampling_GS-34-01-01-1... 46 1.4 1
(EJ727331) 1092959553824 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.4 1
(EJ306704) 1095390099377 Global-Ocean-Sampling_GS-27-01-01-1... 46 1.4 1
(EJ240890) 1095328050440 Global-Ocean-Sampling_GS-27-01-01-1... 46 1.4 1
(CT094828) Sus scrofa genomic clone PigE-172K8, genomic surv... 46 1.4 1
(DY462722) 1599940 MARC 11BOV Bos taurus cDNA 3', mRNA seque... 46 1.4 1
(DY462533) 1599698 MARC 11BOV Bos taurus cDNA 3', mRNA seque... 46 1.4 1
(CV161936) CS_gil_49C01_M13Reverse Blue crab gill, normalize... 46 1.4 1
(CV086696) CS_gil_47A06_M13Reverse Blue crab gill, normalize... 46 1.4 1
>(BJ412998) Dictyostelium discoideum cDNA clone:ddv13c23, 5' end,
single read.
Length = 592
Score = 1172 bits (591), Expect = 0.0
Identities = 591/591 (100%)
Strand = Plus / Plus
Query: 1 ttaaatattgatacatcattaccatttattttaagagataataatgatccaaattcatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttaaatattgatacatcattaccatttattttaagagataataatgatccaaattcatta 60
Query: 61 tcattagaatcaattcaatgggataatggtaatggattttttgttggtggtaatggtggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcattagaatcaattcaatgggataatggtaatggattttttgttggtggtaatggtggt 120
Query: 121 attggtggtattggaagtgatgatgatgcagatgatattaataacaatttatctgtacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attggtggtattggaagtgatgatgatgcagatgatattaataacaatttatctgtacca 180
Query: 181 gccaaatcaatcattaatccagttagagaaggttatttaaagaaacaagataaaaagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gccaaatcaatcattaatccagttagagaaggttatttaaagaaacaagataaaaagaaa 240
Query: 241 tcttggaaaacaagatactttaaattaactgataaatatttatattggtataaatctcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcttggaaaacaagatactttaaattaactgataaatatttatattggtataaatctcca 300
Query: 301 actgctattaaagcatctggtatgattatttgtaaagattatcatattaaattagctcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 actgctattaaagcatctggtatgattatttgtaaagattatcatattaaattagctcca 360
Query: 361 tcaactcattcaaaagaagttaaattagaatttacaccaaaacatatgattgcaggtgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcaactcattcaaaagaagttaaattagaatttacaccaaaacatatgattgcaggtgca 420
Query: 421 acaacaattattcattatattaaatttgaaaatgaacaagaattaaaacaatggacagtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acaacaattattcattatattaaatttgaaaatgaacaagaattaaaacaatggacagtt 480
Query: 481 ttaccaattgtaatagagtcatcaaatgatagtggatcaaataattcaaatacaagtggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttaccaattgtaatagagtcatcaaatgatagtggatcaaataattcaaatacaagtggt 540
Query: 541 ggtaatcaatcaatgattggtaagaaagtatttggtgtaccaattgaaaag 591
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggtaatcaatcaatgattggtaagaaagtatttggtgtaccaattgaaaag 591
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 839,620,352
Number of extensions: 53805075
Number of successful extensions: 4658931
Number of sequences better than 10.0: 297
Length of query: 591
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 568
Effective length of database: 93,106,754,628
Effective search space: 52884636628704
Effective search space used: 52884636628704
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7. 7 |
| Homology vs Protein |
Query= Contig-U13486-1 (Contig-U13486-1Q) /CSM_Contig/Contig-U13486-1Q.Seq.d
(591 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC116986_113(AC116986|pid:none) Dictyostelium discoideum chromos... 50 4e-05
AC116963_26(AC116963|pid:none) Dictyostelium discoideum chromoso... 44 0.004
BX571960_5(BX571960|pid:none) Zebrafish DNA sequence from clone ... 43 0.007
AC117072_36(AC117072|pid:none) Dictyostelium discoideum chromoso... 41 0.028
AE014297_1815(AE014297|pid:none) Drosophila melanogaster chromos... 41 0.028
AE014297_1813(AE014297|pid:none) Drosophila melanogaster chromos... 41 0.028
AK313728_1(AK313728|pid:none) Homo sapiens cDNA, FLJ94328, highl... 40 0.037
AC004895_2(AC004895|pid:none) Homo sapiens PAC clone RP4-810E6 f... 40 0.037
BC155854_1(BC155854|pid:none) Danio rerio si:ch211-239h19.1, mRN... 40 0.037
AK168566_1(AK168566|pid:none) Mus musculus 16 days embryo kidney... 40 0.037
(O08967) RecName: Full=Cytohesin-3; AltName: Full=PH, SEC7 and c... 40 0.037
AC004895_1(AC004895|pid:none) Homo sapiens PAC clone RP4-810E6 f... 40 0.037
BC125677_1(BC125677|pid:none) Xenopus tropicalis hypothetical pr... 40 0.037
(O43739) RecName: Full=Cytohesin-3; AltName: Full=PH, SEC7 and c... 40 0.048
BC124514_1(BC124514|pid:none) Danio rerio zgc:154018, mRNA (cDNA... 40 0.048
AE014134_3647(AE014134|pid:none) Drosophila melanogaster chromos... 40 0.063
AE014134_3648(AE014134|pid:none) Drosophila melanogaster chromos... 40 0.063
AK297391_1(AK297391|pid:none) Homo sapiens cDNA FLJ59285 partial... 40 0.063
(Q9HAU0) RecName: Full=Pleckstrin homology domain-containing fam... 40 0.063
AY574952_1(AY574952|pid:none) Danio rerio cytohesin 1-like prote... 40 0.063
EU194251_1(EU194251|pid:none) Sus scrofa cytohesin 2 mRNA, compl... 40 0.063
A68114_1(A68114|pid:none) Sequence 23 from Patent WO9745538. 40 0.063
AK295151_1(AK295151|pid:none) Homo sapiens cDNA FLJ61590 partial... 40 0.063
AK296277_1(AK296277|pid:none) Homo sapiens cDNA FLJ59284 partial... 40 0.063
AF165226_1(AF165226|pid:none) Lapemis hardwickii IP4/PIP3 bindin... 40 0.063
AK294739_1(AK294739|pid:none) Homo sapiens cDNA FLJ59321 complet... 40 0.063
AB051473_1(AB051473|pid:none) Homo sapiens mRNA for KIAA1686 pro... 40 0.063
BC070174_1(BC070174|pid:none) Homo sapiens pleckstrin homology d... 40 0.063
AF125362_2(AF125362|pid:none) Homo sapiens cytohesin 1 gene, exo... 40 0.063
BC059497_1(BC059497|pid:none) Danio rerio zgc:73134, mRNA (cDNA ... 40 0.063
AB013464_1(AB013464|pid:none) Mus musculus CLM1-A mRNA for cytoh... 40 0.063
AK296914_1(AK296914|pid:none) Homo sapiens cDNA FLJ59923 complet... 39 0.082
AB013467_1(AB013467|pid:none) Mus musculus CLM2-A mRNA for cytoh... 39 0.082
BC074395_1(BC074395|pid:none) Xenopus laevis MGC84366 protein, m... 39 0.082
BC105510_1(BC105510|pid:none) Bos taurus Rho GTPase activating p... 39 0.082
(Q15438) RecName: Full=Cytohesin-1; AltName: Full=PH, SEC7 and c... 39 0.082
AF125362_1(AF125362|pid:none) Homo sapiens cytohesin 1 gene, exo... 39 0.082
BT059690_1(BT059690|pid:none) Salmo salar clone ssal-rgf-001-101... 39 0.082
AB013469_2(AB013469|pid:none) Mus musculus CLM2 gene for cytohes... 39 0.082
AK158216_1(AK158216|pid:none) Mus musculus adult inner ear cDNA,... 39 0.082
BX088564_2(BX088564|pid:none) Zebrafish DNA sequence from clone ... 39 0.082
U59752_1(U59752|pid:none) Human Sec7p-like protein mRNA, partial... 39 0.082
BT059417_1(BT059417|pid:none) Salmo salar clone ssal-rgf-541-375... 39 0.11
(Q80YW0) RecName: Full=Cytohesin-4; AltName: Full=PH, SEC7 and c... 39 0.11
AK304453_1(AK304453|pid:none) Homo sapiens cDNA FLJ54256 complet... 39 0.11
BC018505_1(BC018505|pid:none) Mus musculus cytohesin 4, mRNA (cD... 39 0.11
BC167582_1(BC167582|pid:none) Xenopus tropicalis hypothetical pr... 39 0.11
AK152306_1(AK152306|pid:none) Mus musculus bone marrow macrophag... 39 0.11
A68112_1(A68112|pid:none) Sequence 21 from Patent WO9745538. 39 0.11
AK222817_1(AK222817|pid:none) Homo sapiens mRNA for connector en... 39 0.11
AK292646_1(AK292646|pid:none) Homo sapiens cDNA FLJ78632 complet... 39 0.14
AJ720581_1(AJ720581|pid:none) Gallus gallus mRNA for hypothetica... 39 0.14
AB209335_1(AB209335|pid:none) Homo sapiens mRNA for Connector en... 39 0.14
(Q86WV1) RecName: Full=Src kinase-associated phosphoprotein 1; A... 38 0.18
BC154100_1(BC154100|pid:none) Xenopus tropicalis hypothetical pr... 38 0.18
AY891075_1(AY891075|pid:none) Synthetic construct Homo sapiens c... 38 0.18
Y11215_1(Y11215|pid:none) Homo sapiens mRNA for SKAP55 protein. 38 0.18
AX027844_1(AX027844|pid:none) Sequence 1 from Patent WO0040718. 38 0.24
AK290396_1(AK290396|pid:none) Homo sapiens cDNA FLJ78435 complet... 38 0.24
D29642_1(D29642|pid:none) Homo sapiens KIAA0053 mRNA, partial cds. 38 0.24
AK297056_1(AK297056|pid:none) Homo sapiens cDNA FLJ51694 complet... 38 0.24
AB383728_1(AB383728|pid:none) Synthetic construct DNA, clone: pF... 38 0.24
AK298669_1(AK298669|pid:none) Homo sapiens cDNA FLJ61332 complet... 38 0.24
BC047870_1(BC047870|pid:none) Homo sapiens src kinase associated... 38 0.24
AK129423_1(AK129423|pid:none) Mus musculus mRNA for mKIAA1686 pr... 38 0.24
AK290818_1(AK290818|pid:none) Homo sapiens cDNA FLJ76033 complet... 38 0.24
AK303591_1(AK303591|pid:none) Homo sapiens cDNA FLJ59112 complet... 38 0.24
U55232_1(U55232|pid:none) Mus musculus imprinted RLGS locus Irgl... 37 0.31
(Q8WWN9) RecName: Full=Interactor protein for cytohesin exchange... 37 0.31
AB007863_1(AB007863|pid:none) Homo sapiens KIAA0403 mRNA, partia... 37 0.31
AK220339_1(AK220339|pid:none) Mus musculus mRNA for mKIAA0403 pr... 37 0.31
BT044657_1(BT044657|pid:none) Salmo salar clone ssal-rgf-002-075... 37 0.31
AB020709_1(AB020709|pid:none) Homo sapiens mRNA for KIAA0902 pro... 37 0.41
AF102854_1(AF102854|pid:none) Rattus norvegicus membrane-associa... 37 0.41
(Q8WXI2) RecName: Full=Connector enhancer of kinase suppressor o... 37 0.41
AK169897_1(AK169897|pid:none) Mus musculus NOD-derived CD11c +ve... 37 0.41
CR860003_1(CR860003|pid:none) Pongo abelii mRNA; cDNA DKFZp459B1... 37 0.41
AK294728_1(AK294728|pid:none) Homo sapiens cDNA FLJ61239 complet... 37 0.41
AF418270_1(AF418270|pid:none) Homo sapiens connector enhancer of... 37 0.41
AK315052_1(AK315052|pid:none) Homo sapiens cDNA, FLJ96001, highl... 37 0.41
AK137444_1(AK137444|pid:none) Mus musculus adult male bone cDNA,... 37 0.41
AK122399_1(AK122399|pid:none) Mus musculus mRNA for mKIAA0902 pr... 37 0.41
AK072489_1(AK072489|pid:none) Oryza sativa Japonica Group cDNA c... 37 0.53
(Q7Z5R6) RecName: Full=Amyloid beta A4 precursor protein-binding... 37 0.53
AB085852_1(AB085852|pid:none) Homo sapiens RARP1 mRNA for prolin... 37 0.53
AK303597_1(AK303597|pid:none) Homo sapiens cDNA FLJ61520 complet... 37 0.53
BT088093_1(BT088093|pid:none) Zea mays full-length cDNA clone ZM... 37 0.53
U78755_1(U78755|pid:none) Dictyostelium discoideum SecG (secG) m... 37 0.53
AY152730_1(AY152730|pid:none) Homo sapiens Rap1-interacting adap... 37 0.53
(Q54KA7) RecName: Full=Ankyrin repeat, PH and SEC7 domain contai... 37 0.53
(Q9ST43) RecName: Full=Pleckstrin homology domain-containing pro... 36 0.70
AB092812_1(AB092812|pid:none) Rattus norvegicus mRNA for SKAP55 ... 36 0.70
AB005903_1(AB005903|pid:none) Arabidopsis thaliana AtPH1 mRNA, c... 36 0.70
AK002145_1(AK002145|pid:none) Homo sapiens cDNA FLJ11283 fis, cl... 36 0.70
FN357440_27(FN357440|pid:none) Schistosoma mansoni genome sequen... 36 0.70
(Q7Z5H3) RecName: Full=Rho GTPase-activating protein 22; AltName... 36 0.91
(Q80VL0) RecName: Full=Interactor protein for cytohesin exchange... 36 0.91
AB385228_1(AB385228|pid:none) Synthetic construct DNA, clone: pF... 36 0.91
AK293579_1(AK293579|pid:none) Homo sapiens cDNA FLJ56006 complet... 36 0.91
BX640463_1(BX640463|pid:none) Zebrafish DNA sequence from clone ... 36 0.91
BC003991_1(BC003991|pid:none) Mus musculus amyloid beta (A4) pre... 36 0.91
BC064601_1(BC064601|pid:none) Homo sapiens pleckstrin homology d... 36 0.91
(Q8R5A3) RecName: Full=Amyloid beta A4 precursor protein-binding... 36 0.91
AC112700_1(AC112700|pid:none) Homo sapiens BAC clone RP11-1377I1... 35 1.2
(Q2KI41) RecName: Full=Cytohesin-2; AltName: Full=PH, SEC7 and c... 35 1.2
AB095948_1(AB095948|pid:none) Homo sapiens mRNA for KIAA2028 pro... 35 1.2
(Q8IVE3) RecName: Full=Pleckstrin homology domain-containing fam... 35 1.2
AB385192_1(AB385192|pid:none) Synthetic construct DNA, clone: pF... 35 1.2
AK290135_1(AK290135|pid:none) Homo sapiens cDNA FLJ77032 partial... 35 1.2
AL833400_1(AL833400|pid:none) Homo sapiens mRNA; cDNA DKFZp313A1... 35 1.2
BC040275_1(BC040275|pid:none) Homo sapiens Ras protein-specific ... 35 1.2
AL627314_7(AL627314|pid:none) Mouse DNA sequence from clone RP23... 35 1.2
CR847826_1(CR847826|pid:none) Zebrafish DNA sequence from clone ... 35 1.2
BC065587_1(BC065587|pid:none) Danio rerio connector enhancer of ... 35 1.2
AF491786_1(AF491786|pid:none) Homo sapiens oxysterol binding pro... 35 1.5
AK300269_1(AK300269|pid:none) Homo sapiens cDNA FLJ61389 complet... 35 1.5
AB208935_1(AB208935|pid:none) Homo sapiens mRNA for RasGAP-activ... 35 1.5
AC004016_1(AC004016|pid:none) Homo sapiens BAC clone CTA-424N5 f... 35 1.5
AF491782_1(AF491782|pid:none) Homo sapiens oxysterol binding pro... 35 1.5
AF491783_1(AF491783|pid:none) Homo sapiens oxysterol binding pro... 35 1.5
AF491784_1(AF491784|pid:none) Homo sapiens oxysterol binding pro... 35 1.5
(Q1ZXH8) RecName: Full=Guanine exchange factor for Rac 30; 35 1.5
AL832207_1(AL832207|pid:none) Homo sapiens mRNA; cDNA DKFZp686J0... 35 1.5
AB098166_1(AB098166|pid:none) Monosiga ovata MoPTK-b mRNA for pr... 35 1.5
AK133354_1(AK133354|pid:none) Mus musculus adult male testis cDN... 35 1.5
AB384786_1(AB384786|pid:none) Synthetic construct DNA, clone: pF... 35 1.5
AB384067_1(AB384067|pid:none) Synthetic construct DNA, clone: pF... 35 1.5
(O95294) RecName: Full=RasGAP-activating-like protein 1; &BC093... 35 1.5
(Q9Y2H5) RecName: Full=Pleckstrin homology domain-containing fam... 35 1.5
(P20936) RecName: Full=Ras GTPase-activating protein 1; ... 35 1.5
BC143261_1(BC143261|pid:none) Homo sapiens RAS protein activator... 35 1.5
(P09851) RecName: Full=Ras GTPase-activating protein 1; ... 35 1.5
AF086713_1(AF086713|pid:none) Homo sapiens rasGAP-activating-lik... 35 1.5
A37101_1(A37101|pid:none) Sequence 3 from Patent WO9403597. 35 1.5
AB005237_11(AB005237|pid:none) Arabidopsis thaliana genomic DNA,... 35 1.5
AB209106_1(AB209106|pid:none) Homo sapiens mRNA for RAS p21 prot... 35 1.5
AK312739_1(AK312739|pid:none) Homo sapiens cDNA, FLJ93145, Homo ... 35 1.5
AF323727_1(AF323727|pid:none) Homo sapiens OSBP-related protein ... 35 1.5
BC161500_1(BC161500|pid:none) Xenopus tropicalis connector enhan... 35 2.0
DQ829778_1(DQ829778|pid:none) Branchiostoma belcheri tsingtaunes... 35 2.0
AE014134_1682(AE014134|pid:none) Drosophila melanogaster chromos... 35 2.0
(Q8VC98) RecName: Full=Pleckstrin homology domain-containing fam... 35 2.0
AE014134_1680(AE014134|pid:none) Drosophila melanogaster chromos... 35 2.0
CR858268_1(CR858268|pid:none) Pongo abelii mRNA; cDNA DKFZp469B2... 35 2.0
BT030850_1(BT030850|pid:none) Drosophila melanogaster IP17133 fu... 35 2.0
AE014134_1681(AE014134|pid:none) Drosophila melanogaster chromos... 35 2.0
AM920429_120(AM920429|pid:none) Penicillium chrysogenum Wisconsi... 34 2.6
BC099788_1(BC099788|pid:none) Rattus norvegicus connector enhanc... 34 2.6
CR548612_294(CR548612|pid:none) Paramecium tetraurelia macronucl... 34 2.6
BX470224_4(BX470224|pid:none) Zebrafish DNA sequence from clone ... 34 2.6
FJ970037_1(FJ970037|pid:none) Musca domestica hf32982 protein mR... 34 2.6
BC063310_1(BC063310|pid:none) Homo sapiens pleckstrin homology d... 34 2.6
BC061706_1(BC061706|pid:none) Danio rerio pleckstrin, mRNA (cDNA... 34 3.5
AK146866_1(AK146866|pid:none) Mus musculus 17 days embryo stomac... 34 3.5
(P34400) RecName: Full=Abnormal cell migration protein 10; &L10... 34 3.5
BC071599_1(BC071599|pid:none) Homo sapiens pleckstrin homology d... 34 3.5
AF020313_1(AF020313|pid:none) Mus musculus proline-rich protein ... 34 3.5
AB385210_1(AB385210|pid:none) Synthetic construct DNA, clone: pF... 34 3.5
BC128752_1(BC128752|pid:none) Rattus norvegicus pleckstrin homol... 34 3.5
BC084587_1(BC084587|pid:none) Mus musculus pleckstrin homology d... 34 3.5
CR753821_1(CR753821|pid:none) Zebrafish DNA sequence from clone ... 34 3.5
BC105186_1(BC105186|pid:none) Bos taurus amyloid beta (A4) precu... 34 3.5
BX001030_7(BX001030|pid:none) Zebrafish DNA sequence from clone ... 33 4.5
BC047918_1(BC047918|pid:none) Homo sapiens Rho GTPase activating... 33 4.5
(Q8N264) RecName: Full=Rho GTPase-activating protein 24; AltName... 33 4.5
AK091196_1(AK091196|pid:none) Homo sapiens cDNA FLJ33877 fis, cl... 33 4.5
BC064211_1(BC064211|pid:none) Xenopus tropicalis Centaurin-alpha... 33 4.5
BC084161_1(BC084161|pid:none) Xenopus laevis hypothetical LOC495... 33 4.5
BC122736_1(BC122736|pid:none) Bos taurus pleckstrin homology dom... 33 4.5
AL596062_4(AL596062|pid:none) Mouse DNA sequence from clone RP23... 33 4.5
AK138030_1(AK138030|pid:none) Mus musculus 16 days neonate thymu... 33 4.5
AM910993_92(AM910993|pid:none) Plasmodium knowlesi strain H chro... 33 4.5
AK130576_1(AK130576|pid:none) Homo sapiens cDNA FLJ27066 fis, cl... 33 4.5
AJ236896_1(AJ236896|pid:none) Caenorhabditis elegans mRNA for GR... 33 5.9
(P34512) RecName: Full=GTP exchange factor for ARFs 1; &L15314_... 33 5.9
BX088564_1(BX088564|pid:none) Zebrafish DNA sequence from clone ... 33 5.9
AJ584699_1(AJ584699|pid:none) Homo sapiens mRNA for RAPH1 protei... 33 5.9
AL844509_599(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 33 5.9
AB051468_1(AB051468|pid:none) Homo sapiens mRNA for KIAA1681 pro... 33 5.9
EF145537_1(EF145537|pid:none) Populus trichocarpa clone WS01125_... 33 5.9
BT026166_1(BT026166|pid:none) Bos taurus Rho GTPase activating p... 33 5.9
(Q70E73) RecName: Full=Ras-associated and pleckstrin homology do... 33 5.9
AK029252_1(AK029252|pid:none) Mus musculus 0 day neonate head cD... 33 5.9
AL645798_6(AL645798|pid:none) Zebrafish DNA sequence from clone ... 33 5.9
BC129161_1(BC129161|pid:none) Danio rerio zgc:158223, mRNA (cDNA... 33 5.9
BC125583_1(BC125583|pid:none) Mus musculus pleckstrin homology d... 33 5.9
BT045566_1(BT045566|pid:none) Salmo salar clone ssal-rgf-525-017... 33 7.7
AB209407_1(AB209407|pid:none) Homo sapiens mRNA for pleckstrin h... 33 7.7
BX664700_3(BX664700|pid:none) Human DNA sequence from clone WI2-... 33 7.7
AF286160_1(AF286160|pid:none) Homo sapiens Tandem PH Domain Cont... 33 7.7
BC089655_1(BC089655|pid:none) Xenopus tropicalis dual adaptor of... 33 7.7
AC115612_46(AC115612|pid:none) Dictyostelium discoideum chromoso... 33 7.7
AM270414_17(AM270414|pid:none) Aspergillus niger contig An18c022... 33 7.7
AL683804_3(AL683804|pid:none) Mouse DNA sequence from clone RP23... 33 7.7
BX842641_28(BX842641|pid:none) Neurospora crassa DNA linkage gro... 33 7.7
CP000885_395(CP000885|pid:none) Clostridium phytofermentans ISDg... 33 7.7
CU633438_916(CU633438|pid:none) Podospora anserina genomic DNA c... 33 7.7
BC073109_1(BC073109|pid:none) Xenopus laevis hypothetical protei... 33 7.7
>AC116986_113(AC116986|pid:none) Dictyostelium discoideum chromosome
2 map 2234041-2567370 strain AX4, complete sequence.
Length = 458
Score = 50.4 bits (119), Expect = 4e-05
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Frame = +1
Query: 169 LSVPAKSIINPVREGYLKKQDKK-KSWKTRYFKLTDKYLYWYKSPTAIKASGMIICKDYH 345
L V + REG+L KQ ++W+ R+F L K L+++KS I+A+G+I +
Sbjct: 6 LKVSVSQLAPSDREGWLTKQGGSIRTWRRRWFVLKGKKLFYFKSKGDIEATGLIELEQNS 65
Query: 346 IKLAPSTHSKEVKLEFTPKHMIAGATTIIHYIKFENEQELKQW 474
K+ K FT G + + YI E E ++KQW
Sbjct: 66 FVKEEKDKDKKKKYMFT-----VGTSKRVFYIFAETETDMKQW 103
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 699,022,598
Number of extensions: 11139382
Number of successful extensions: 20941
Number of sequences better than 10.0: 198
Number of HSP's gapped: 20934
Number of HSP's successfully gapped: 198
Length of query: 197
Length of database: 1,051,180,864
Length adjustment: 122
Effective length of query: 75
Effective length of database: 656,320,666
Effective search space: 49224049950
Effective search space used: 49224049950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
1 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |