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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13475-1
Contig ID Contig-U13475-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13475-1 (Contig-U13475-1Q) /CSM_Contig/Contig-U13475-1Q.Seq.d
ATAAGCGATTTAACACCATATTTAAATTTTAATTCAACCGATCAAATATA
TACATCATTTCCAGAGTCAATGGCATTTGATGATTATATGGATTATGAAG
AATCATTGGTTGAATGGAAGAGACAAGTCGAACAAAATCTTGGTATAATT
CAATTACCACATTCAATTGGTAGAACTTACCCAAGACCAAAGGTAATTCA
CGAACAATTATTTAGAAAGAATTCAGAAGCATCAAATGATGATTCCATCT
CTTATGACATTGAAAGAAAATTAACAGATTCTGATATTAAGGAAACTAAT
TCCTCAGTTAATGATGATGGTGAGTCCTTTTCACATTCTCCAACATTAAG
AGGTAACAATGGAAGTTCATTATCAGTTGGTGGCGGCGGTGATAATCATG
ATAATACCTCAAATAAAGATAATGCCTCCTCACAAGGCACCAACCATGGT
GTAACATTAAATCATCCAAACTCTGGTATAAATTTACGTGAACGTTCAAA
TAGTGATACAAGTACAGGATCATTTGAAGGTACACAATTGGATGGATCAA
GTCCAATGGATGGTAGTCCAAGTACAGGATCATTGGCAGGATTTGTAGCA
AATGGTACA
Gap no gap
Contig length 609
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 1002029
End point 1001420
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U13475
List of clone(s) 

est1=VFC769F,1,610
Translated Amino Acid sequence 
ISDLTPYLNFNSTDQIYTSFPESMAFDDYMDYEESLVEWKRQVEQNLGIIQLPHSIGRTY
PRPKVIHEQLFRKNSEASNDDSISYDIERKLTDSDIKETNSSVNDDGESFSHSPTLRGNN
GSSLSVGGGGDNHDNTSNKDNASSQGTNHGVTLNHPNSGINLRERSNSDTSTGSFEGTQL
DGSSPMDGSPSTGSLAGFVANGT
Translated Amino Acid sequence (All Frames) 
Frame A:
ISDLTPYLNFNSTDQIYTSFPESMAFDDYMDYEESLVEWKRQVEQNLGIIQLPHSIGRTY
PRPKVIHEQLFRKNSEASNDDSISYDIERKLTDSDIKETNSSVNDDGESFSHSPTLRGNN
GSSLSVGGGGDNHDNTSNKDNASSQGTNHGVTLNHPNSGINLRERSNSDTSTGSFEGTQL
DGSSPMDGSPSTGSLAGFVANGT


Frame B:
*ai*hhi*iliqpikyihhfqsqwhlmiiwimknhwlngrdksnkilv*fnyhiqlvelt
qdqr*ftnnyleriqkhqmmipslmtlken*qililrklipqlmmmvspfhilqh*evtm
evhyqlvaaviimiipqikimpphkaptmv*h*iiqtlv*iyvnvqiviqvqdhlkvhnw
mdqvqwmvvqvqdhwqdl*qmv


Frame C:
krfntifkf*fnrsniyiisrvngi**lygl*riig*meetsrtkswynsittfnw*nlp
ktkgnsrtii*kefrsik**fhll*h*kkinrf*y*gn*fls***w*vlftfsnikr*qw
kfiiswwrr**s**ylk*r*clltrhqpwcnikssklwykft*tfk**ykyrii*rytig
wiksngw*skyriigricskwy
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13475-1 (Contig-U13475-1Q)
/CSM_Contig/Contig-U13475-1Q.Seq.d
         (609 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13475-1 (Contig-U13475-1Q) /CSM_Contig/Conti...  1207  0.0
Contig-U10293-1 (Contig-U10293-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U14901-1 (Contig-U14901-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U13797-1 (Contig-U13797-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U12582-1 (Contig-U12582-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U11970-1 (Contig-U11970-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U01148-1 (Contig-U01148-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U13473-1 (Contig-U13473-1Q) /CSM_Contig/Conti...    32  0.66
Contig-U12080-1 (Contig-U12080-1Q) /CSM_Contig/Conti...    32  0.66
Contig-U11771-1 (Contig-U11771-1Q) /CSM_Contig/Conti...    32  0.66

>Contig-U13475-1 (Contig-U13475-1Q) /CSM_Contig/Contig-U13475-1Q.Seq.d
          Length = 609

 Score = 1207 bits (609), Expect = 0.0
 Identities = 609/609 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataagcgatttaacaccatatttaaattttaattcaaccgatcaaatatatacatcattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ataagcgatttaacaccatatttaaattttaattcaaccgatcaaatatatacatcattt 60

                                                                       
Query: 61  ccagagtcaatggcatttgatgattatatggattatgaagaatcattggttgaatggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ccagagtcaatggcatttgatgattatatggattatgaagaatcattggttgaatggaag 120

                                                                       
Query: 121 agacaagtcgaacaaaatcttggtataattcaattaccacattcaattggtagaacttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agacaagtcgaacaaaatcttggtataattcaattaccacattcaattggtagaacttac 180

                                                                       
Query: 181 ccaagaccaaaggtaattcacgaacaattatttagaaagaattcagaagcatcaaatgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccaagaccaaaggtaattcacgaacaattatttagaaagaattcagaagcatcaaatgat 240

                                                                       
Query: 241 gattccatctcttatgacattgaaagaaaattaacagattctgatattaaggaaactaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gattccatctcttatgacattgaaagaaaattaacagattctgatattaaggaaactaat 300

                                                                       
Query: 301 tcctcagttaatgatgatggtgagtccttttcacattctccaacattaagaggtaacaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcctcagttaatgatgatggtgagtccttttcacattctccaacattaagaggtaacaat 360

                                                                       
Query: 361 ggaagttcattatcagttggtggcggcggtgataatcatgataatacctcaaataaagat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagttcattatcagttggtggcggcggtgataatcatgataatacctcaaataaagat 420

                                                                       
Query: 421 aatgcctcctcacaaggcaccaaccatggtgtaacattaaatcatccaaactctggtata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aatgcctcctcacaaggcaccaaccatggtgtaacattaaatcatccaaactctggtata 480

                                                                       
Query: 481 aatttacgtgaacgttcaaatagtgatacaagtacaggatcatttgaaggtacacaattg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aatttacgtgaacgttcaaatagtgatacaagtacaggatcatttgaaggtacacaattg 540

                                                                       
Query: 541 gatggatcaagtccaatggatggtagtccaagtacaggatcattggcaggatttgtagca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gatggatcaagtccaatggatggtagtccaagtacaggatcattggcaggatttgtagca 600

                    
Query: 601 aatggtaca 609
           |||||||||
Sbjct: 601 aatggtaca 609


>Contig-U10293-1 (Contig-U10293-1Q) /CSM_Contig/Contig-U10293-1Q.Seq.d
          Length = 920

 Score = 36.2 bits (18), Expect = 0.043
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 21  tttaaattttaattcaac 38
           ||||||||||||||||||
Sbjct: 266 tttaaattttaattcaac 249


>Contig-U14901-1 (Contig-U14901-1Q) /CSM_Contig/Contig-U14901-1Q.Seq.d
          Length = 617

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                           
Query: 20 atttaaattttaattca 36
          |||||||||||||||||
Sbjct: 82 atttaaattttaattca 98


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7805
Number of Sequences: 6905
Number of extensions: 7805
Number of successful extensions: 858
Number of sequences better than 10.0: 82
length of query: 609
length of database: 5,674,871
effective HSP length: 16
effective length of query: 593
effective length of database: 5,564,391
effective search space: 3299683863
effective search space used: 3299683863
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 9
Homology vs DNA 
Query= Contig-U13475-1 (Contig-U13475-1Q) /CSM_Contig/Contig-U13475-1Q.Seq.d
         (609 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ412007) Dictyostelium discoideum cDNA clone:ddv6j17, 5' e...  1207   0.0    1
(AM479894) Vitis vinifera contig VV78X201296.6, whole genome...    42   1.0    3
(ED950323) OA_CBa0161H03.f OA_CBa Oryza australiensis genomi...    46   1.5    1
(ED950118) OA_CBa0161D03.f OA_CBa Oryza australiensis genomi...    46   1.5    1
(ED926314) OA_CBa0100E24.f OA_CBa Oryza australiensis genomi...    46   1.5    1
(DX311814) OR_ABa0225I18.f OR_ABa Oryza ridleyi genomic clon...    46   1.5    1
(DX217541) OR_ABa0092L07.r OR_ABa Oryza ridleyi genomic clon...    46   1.5    1
(CL037924) CH216-44E19_RM1.1 CH216 Xenopus (Silurana) tropic...    46   1.5    1
(AP001295) Mus musculus genomic DNA, chromosome 7, clone:B96.      44   5.8    1
(AC012540) Mus musculus chromosome 7, clone RP23-101N20, com...    44   5.8    1
(AC084673) Caenorhabditis briggsae cosmid G47I15, complete s...    44   5.8    1
(AC107147) Rattus norvegicus clone CH230-336F19, *** SEQUENC...    44   5.8    1
(CU571231) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.8    1
(FI022149) CHO_OF6930xc18f1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   5.8    1
(EJ528580) 1092955204408 Global-Ocean-Sampling_GS-29-01-01-1...    44   5.8    1
(DH801614) Rattus norvegicus DNA, BAC clone: RNB1-397F06, 3'...    44   5.8    1
(DH683563) Rattus norvegicus DNA, BAC clone: RNB1-237L14, 5'...    44   5.8    1
(DV675453) CGN-12430 Seed of Middle Development Stage Coffea...    44   5.8    1
(CN697437) E0394B05-5 NIA Mouse E10.5 whole embryo cDNA libr...    44   5.8    1
(CB992887) AGENCOURT_13629122 NIH_MGC_148 Homo sapiens cDNA ...    44   5.8    1
(EY588389) CAWU2065.rev CAWU Capitella sp. I ECS-2004 Primar...    44   5.8    1
(CP000885) Clostridium phytofermentans ISDg, complete genome.      44   5.8    1
(AY667408) Escherichia coli O86:H2 O-antigen gene cluster, c...    44   5.8    1
(AY220982) Escherichia coli O86:B7 O-antigen gene cluster, c...    44   5.8    1
(AQ198633) RPCI11-46G19.TJ RPCI-11 Homo sapiens genomic clon...    36   6.2    2
(DB769112) Apis mellifera head cDNA, RIKEN full-length enric...    36   6.3    2
(EI856407) CAH1-4J10TV CAA1Ba Cicer arietinum genomic clone ...    30   6.3    3
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    34   8.1    7
(FC604646) CAXS1633.fwd CAXS Lottia gigantea from head, foot...    34   8.2    3
(AC092530) Rattus norvegicus clone rp32-28p17, complete sequ...    40   8.8    2
(FC662568) CAXW2733.fwd CAXW Lottia gigantea from female gon...    34   8.9    3
(FC666876) CAXW5151.fwd CAXW Lottia gigantea from female gon...    34   9.2    3
(CU682955) Crassostrea gigas digestive gland subtracted libr...    40   9.4    2
(FC575190) CAXP11556.fwd CAXP Lottia gigantea from head, foo...    34   9.7    3
(AC106819) Homo sapiens chromosome 16 clone RP11-696P19, com...    36   9.7    3
(AC107287) Rattus norvegicus clone CH230-123P6, WORKING DRAF...    40   9.9    2

>(BJ412007) Dictyostelium discoideum cDNA clone:ddv6j17, 5' end,
           single read.
          Length = 610

 Score = 1207 bits (609), Expect = 0.0
 Identities = 609/609 (100%)
 Strand = Plus / Plus


Query: 1   ataagcgatttaacaccatatttaaattttaattcaaccgatcaaatatatacatcattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ataagcgatttaacaccatatttaaattttaattcaaccgatcaaatatatacatcattt 60


Query: 61  ccagagtcaatggcatttgatgattatatggattatgaagaatcattggttgaatggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ccagagtcaatggcatttgatgattatatggattatgaagaatcattggttgaatggaag 120


Query: 121 agacaagtcgaacaaaatcttggtataattcaattaccacattcaattggtagaacttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agacaagtcgaacaaaatcttggtataattcaattaccacattcaattggtagaacttac 180


Query: 181 ccaagaccaaaggtaattcacgaacaattatttagaaagaattcagaagcatcaaatgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccaagaccaaaggtaattcacgaacaattatttagaaagaattcagaagcatcaaatgat 240


Query: 241 gattccatctcttatgacattgaaagaaaattaacagattctgatattaaggaaactaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gattccatctcttatgacattgaaagaaaattaacagattctgatattaaggaaactaat 300


Query: 301 tcctcagttaatgatgatggtgagtccttttcacattctccaacattaagaggtaacaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcctcagttaatgatgatggtgagtccttttcacattctccaacattaagaggtaacaat 360


Query: 361 ggaagttcattatcagttggtggcggcggtgataatcatgataatacctcaaataaagat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagttcattatcagttggtggcggcggtgataatcatgataatacctcaaataaagat 420


Query: 421 aatgcctcctcacaaggcaccaaccatggtgtaacattaaatcatccaaactctggtata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aatgcctcctcacaaggcaccaaccatggtgtaacattaaatcatccaaactctggtata 480


Query: 481 aatttacgtgaacgttcaaatagtgatacaagtacaggatcatttgaaggtacacaattg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aatttacgtgaacgttcaaatagtgatacaagtacaggatcatttgaaggtacacaattg 540


Query: 541 gatggatcaagtccaatggatggtagtccaagtacaggatcattggcaggatttgtagca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gatggatcaagtccaatggatggtagtccaagtacaggatcattggcaggatttgtagca 600


Query: 601 aatggtaca 609
           |||||||||
Sbjct: 601 aatggtaca 609

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 691,160,233
Number of extensions: 39854354
Number of successful extensions: 3287969
Number of sequences better than 10.0: 37
Length of query: 609
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 586
Effective length of database: 93,106,754,628
Effective search space: 54560558212008
Effective search space used: 54560558212008
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 7
Homology vs Protein 
Query= Contig-U13475-1 (Contig-U13475-1Q) /CSM_Contig/Contig-U13475-1Q.Seq.d
         (609 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU278670_1(EU278670|pid:none) Homo sapiens haplotype 31 dentin s...    39   0.089
EU278664_1(EU278664|pid:none) Homo sapiens haplotype 25 dentin s...    39   0.089
EU278639_1(EU278639|pid:none) Homo sapiens haplotype 38A dentin ...    39   0.089
EU278636_1(EU278636|pid:none) Homo sapiens haplotype 36A dentin ...    39   0.089
EU278675_1(EU278675|pid:none) Homo sapiens haplotype 36 dentin s...    39   0.089
EU278644_1(EU278644|pid:none) Homo sapiens haplotype 5 dentin si...    39   0.089
EU278632_1(EU278632|pid:none) Homo sapiens haplotype 20A dentin ...    39   0.089
EU278671_1(EU278671|pid:none) Homo sapiens haplotype 32 dentin s...    39   0.089
EU278677_1(EU278677|pid:none) Homo sapiens haplotype 38 dentin s...    39   0.089
EU278633_1(EU278633|pid:none) Homo sapiens haplotype 20B dentin ...    39   0.089
AF163151_1(AF163151|pid:none) Homo sapiens dentin sialophosphopr...    39   0.12
EU278657_1(EU278657|pid:none) Homo sapiens haplotype 18 dentin s...    39   0.12
EU278622_1(EU278622|pid:none) Homo sapiens haplotype 1D dentin s...    39   0.12
EU278655_1(EU278655|pid:none) Homo sapiens haplotype 16 dentin s...    39   0.12
EU278620_1(EU278620|pid:none) Homo sapiens haplotype 1A dentin s...    39   0.12
EU278658_1(EU278658|pid:none) Homo sapiens haplotype 19 dentin s...    39   0.12
EU278621_1(EU278621|pid:none) Homo sapiens haplotype 1B dentin s...    39   0.12
EU278624_1(EU278624|pid:none) Homo sapiens haplotype 1C dentin s...    39   0.12
EU278640_1(EU278640|pid:none) Homo sapiens haplotype 1 dentin si...    39   0.12
EU278619_1(EU278619|pid:none) Homo sapiens haplotype 1E dentin s...    39   0.12
EU278645_1(EU278645|pid:none) Homo sapiens haplotype 6 dentin si...    39   0.12
EU278672_1(EU278672|pid:none) Homo sapiens haplotype 33 dentin s...    39   0.12
EU278643_1(EU278643|pid:none) Homo sapiens haplotype 4 dentin si...    39   0.12
EU278634_1(EU278634|pid:none) Homo sapiens haplotype 21A dentin ...    39   0.12
EU278623_1(EU278623|pid:none) Homo sapiens haplotype 1F dentin s...    39   0.12
EU278674_1(EU278674|pid:none) Homo sapiens haplotype 35 dentin s...    39   0.12
(Q9NZW4) RecName: Full=Dentin sialophosphoprotein; Contains:   R...    37   0.34
EU278638_1(EU278638|pid:none) Homo sapiens haplotype 14A dentin ...    37   0.34
CP000010_873(CP000010|pid:none) Burkholderia mallei ATCC 23344 c...    37   0.44
BX571965_1647(BX571965|pid:none) Burkholderia pseudomallei strai...    37   0.58
AF094508_1(AF094508|pid:none) Homo sapiens dentin phosphoryn mRN...    37   0.58
AC116305_50(AC116305|pid:none) Dictyostelium discoideum chromoso...    36   0.75
AP007174_401(AP007174|pid:none) Aspergillus oryzae RIB40 genomic...    36   0.98
(Q18DN4) RecName: Full=Halomucin; Flags: Precursor;  &AM180088_8...    36   0.98
AE013599_65(AE013599|pid:none) Drosophila melanogaster chromosom...    36   0.98
(B0G188) RecName: Full=GATA zinc finger domain-containing protei...    35   1.3
CR382139_126(CR382139|pid:none) Debaryomyces hansenii strain CBS...    35   1.3
CU928179_599(CU928179|pid:none) Zygosaccharomyces rouxii strain ...    35   1.7
CP001408_2128(CP001408|pid:none) Burkholderia pseudomallei MSHR3...    35   1.7
AC116986_36(AC116986|pid:none) Dictyostelium discoideum chromoso...    35   2.2
(Q54HI2) RecName: Full=SPX and EXS domain-containing protein 4;        35   2.2
(P54674) RecName: Full=Phosphatidylinositol 3-kinase 2;         ...    35   2.2
AE015927_1640(AE015927|pid:none) Clostridium tetani E88, complet...    35   2.2
CP000885_1864(CP000885|pid:none) Clostridium phytofermentans ISD...    34   2.9
AL034559_1(AL034559|pid:none) Plasmodium falciparum MAL3P7, comp...    34   2.9
(P07856) RecName: Full=Sericin 1; AltName: Full=Silk gum protein...    34   2.9
AB112019_1(AB112019|pid:none) Bombyx mori ser1 mRNA for sericin ...    34   2.9
AC116960_55(AC116960|pid:none) Dictyostelium discoideum chromoso...    34   3.7
CP000570_2007(CP000570|pid:none) Burkholderia pseudomallei 668 c...    34   3.7
AE008384_952(AE008384|pid:none) Methanosarcina mazei strain Goe1...    34   3.7
(P14164) RecName: Full=Transcription factor BAF1; AltName: Full=...    33   4.9
BC071371_1(BC071371|pid:none) Danio rerio serine/arginine repeti...    33   4.9
BC124138_1(BC124138|pid:none) Danio rerio serine/arginine repeti...    33   4.9
AC116957_103(AC116957|pid:none) Dictyostelium discoideum chromos...    33   4.9
M60178_1(M60178|pid:none) L.lactis secreted protein (usp45) gene...    33   4.9
(P22865) RecName: Full=Secreted 45 kDa protein; Flags: Precursor...    33   4.9
CP001615_2535(CP001615|pid:none) Exiguobacterium sp. AT1b, compl...    33   4.9
CP000323_464(CP000323|pid:none) Psychrobacter cryohalolentis K5,...    33   6.3
AM773447_1(AM773447|pid:none) Aedes aegypti mRNA for hormone rec...    33   6.4
DQ316778_1(DQ316778|pid:none) Tetranychus urticae GABA receptor ...    33   6.4
BC129802_1(BC129802|pid:none) Mus musculus dentin sialophosphopr...    33   6.4
CR380953_171(CR380953|pid:none) Candida glabrata strain CBS138 c...    33   6.4
(Q54B29) RecName: Full=Uncharacterized membrane protein DDB_G029...    33   6.4
BA000026_693(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    33   6.4
BX293980_298(BX293980|pid:none) Mycoplasma mycoides subsp. mycoi...    33   6.4
D00570_1(D00570|pid:none) Mus musculus mRNA for ORFs (putative p...    33   8.2
AF193879_1(AF193879|pid:none) Mycoplasma hyorhinis strain GDL vl...    33   8.3
AC117075_53(AC117075|pid:none) Dictyostelium discoideum chromoso...    33   8.3
AC117076_58(AC117076|pid:none) Dictyostelium discoideum chromoso...    33   8.3
AL031745_47(AL031745|pid:none) Plasmodium falciparum DNA from MA...    33   8.3
(Q02629) RecName: Full=Nucleoporin NUP100/NSP100; AltName: Full=...    33   8.3
EU284752_1(EU284752|pid:none) Homo sapiens dentin sialophosphopr...    33   8.3
AF193875_1(AF193875|pid:none) Mycoplasma hyorhinis strain SK76 4...    33   8.3
EU278637_1(EU278637|pid:none) Homo sapiens haplotype 37A dentin ...    33   8.3
AF193878_1(AF193878|pid:none) Mycoplasma hyorhinis strain SK76 8...    33   8.3
AF193876_1(AF193876|pid:none) Mycoplasma hyorhinis strain SK76 5...    33   8.3
CP001398_983(CP001398|pid:none) Thermococcus gammatolerans EJ3, ...    33   8.3
BC154704_1(BC154704|pid:none) Xenopus tropicalis hypothetical pr...    33   8.3
DQ504302_8(DQ504302|pid:none) Marinobacter hydrocarbonoclasticus...    33   8.3
(Q9TW28) RecName: Full=Myosin-M heavy chain; AltName: Full=RhoGE...    33   8.3

>EU278670_1(EU278670|pid:none) Homo sapiens haplotype 31 dentin
           sialophosphoprotein (DSPP) gene, exon 5 and partial cds.
          Length = 393

 Score = 39.3 bits (90), Expect = 0.089
 Identities = 29/121 (23%), Positives = 51/121 (42%)
 Frame = +1

Query: 220 NSEASNDDSISYDIERKLTDSDIKETNSSVNDDGESFSHSPTLRXXXXXXXXXXXXXXXH 399
           NS  S+D S S D       SD  ++++S + D    S+S
Sbjct: 18  NSSDSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSD----SSNSSDSSESSNSS 73

Query: 400 DNTSNKDNASSQGTNHGVTLNHPNSGINLRERSNSDTSTGSFEGTQLDGSSPMDGSPSTG 579
           DN+++ D+++S  ++     ++ +   N  + SNS  S+ S      D S+  D S S+
Sbjct: 74  DNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSD 133

Query: 580 S 582
           S
Sbjct: 134 S 134

Lambda     K      H
   0.307    0.126    0.355

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 995,999,719
Number of extensions: 20198447
Number of successful extensions: 62323
Number of sequences better than 10.0: 80
Number of HSP's gapped: 61982
Number of HSP's successfully gapped: 113
Length of query: 203
Length of database: 1,051,180,864
Length adjustment: 122
Effective length of query: 81
Effective length of database: 656,320,666
Effective search space: 53161973946
Effective search space used: 53161973946
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.43  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U13475-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0