>Contig-U13446-1 (Contig-U13446-1Q) /CSM_Contig/Contig-U13446-1Q.Seq.d
CTTCAAATTCAGGTTCTCAATCAACTTCAAATTCTGGCTCTGAAGCATCT
GGTTCATCAAATTCCGGTTCTCAATCAACTTCAAATTCTGGCTCTGAAGC
ATCTGGTTCATCAAATTCTGGTTCTCAAAGCTCAACTGATTCATCAAATT
CTGGCTCTCAAGGTTCAACTGGTTCATCAAATTCTGGTTCTCAAAGTTCA
ACTGATTCATCAAATTCTGGTTCTCAAAGCTCAACTGATTCATCCAATTC
TGGTTCTCAAGGCTCAACTGGTTCATCAAATTCTGGCTCTGAATC

est1=SSL284F,1,296

LQIQVLNQLQILALKHLVHQIPVLNQLQILALKHLVHQILVLKAQLIHQILALKVQLVHQ
ILVLKVQLIHQILVLKAQLIHPILVLKAQLVHQILALN

Frame A:
LQIQVLNQLQILALKHLVHQIPVLNQLQILALKHLVHQILVLKAQLIHQILALKVQLVHQ
ILVLKVQLIHQILVLKAQLIHPILVLKAQLVHQILALN


Frame B:
fkfrfsinfkfwl*siwfikfrfsinfkfwl*siwfikfwfskln*fikfwlsrfnwfik
fwfskfn*fikfwfskln*fiqfwfsrlnwfikfwl*i


Frame C:
snsgsqstsnsgseasgssnsgsqstsnsgseasgssnsgsqsstdssnsgsqgstgssn
sgsqsstdssnsgsqsstdssnsgsqgstgssnsgse

Query= Contig-U13446-1 (Contig-U13446-1Q)
/CSM_Contig/Contig-U13446-1Q.Seq.d
         (295 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13446-1 (Contig-U13446-1Q) /CSM_Contig/Conti...   585  e-167
Contig-U12101-1 (Contig-U12101-1Q) /CSM_Contig/Conti...    50  1e-06
Contig-U02361-1 (Contig-U02361-1Q) /CSM_Contig/Conti...    36  0.020
Contig-U12257-1 (Contig-U12257-1Q) /CSM_Contig/Conti...    34  0.079
Contig-U10089-1 (Contig-U10089-1Q) /CSM_Contig/Conti...    34  0.079
Contig-U13243-1 (Contig-U13243-1Q) /CSM_Contig/Conti...    32  0.31
Contig-U13024-1 (Contig-U13024-1Q) /CSM_Contig/Conti...    32  0.31
Contig-U12804-1 (Contig-U12804-1Q) /CSM_Contig/Conti...    32  0.31
Contig-U11272-1 (Contig-U11272-1Q) /CSM_Contig/Conti...    32  0.31
Contig-U09437-1 (Contig-U09437-1Q) /CSM_Contig/Conti...    32  0.31

>Contig-U13446-1 (Contig-U13446-1Q) /CSM_Contig/Contig-U13446-1Q.Seq.d
          Length = 295

 Score =  585 bits (295), Expect = e-167
 Identities = 295/295 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcaaattcaggttctcaatcaacttcaaattctggctctgaagcatctggttcatcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cttcaaattcaggttctcaatcaacttcaaattctggctctgaagcatctggttcatcaa 60

                                                                       
Query: 61  attccggttctcaatcaacttcaaattctggctctgaagcatctggttcatcaaattctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attccggttctcaatcaacttcaaattctggctctgaagcatctggttcatcaaattctg 120

                                                                       
Query: 121 gttctcaaagctcaactgattcatcaaattctggctctcaaggttcaactggttcatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gttctcaaagctcaactgattcatcaaattctggctctcaaggttcaactggttcatcaa 180

                                                                       
Query: 181 attctggttctcaaagttcaactgattcatcaaattctggttctcaaagctcaactgatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attctggttctcaaagttcaactgattcatcaaattctggttctcaaagctcaactgatt 240

                                                                  
Query: 241 catccaattctggttctcaaggctcaactggttcatcaaattctggctctgaatc 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 catccaattctggttctcaaggctcaactggttcatcaaattctggctctgaatc 295


>Contig-U12101-1 (Contig-U12101-1Q) /CSM_Contig/Contig-U12101-1Q.Seq.d
          Length = 1915

 Score = 50.1 bits (25), Expect = 1e-06
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                
Query: 132 tcaactgattcatcaaattctggctctcaaggttcaactggttcatcaaattc 184
           ||||||| |||||||||||| | |||| ||| ||||| |||||||||| ||||
Sbjct: 477 tcaactggttcatcaaattcagcctctgaagtttcaattggttcatcacattc 529


 Score = 44.1 bits (22), Expect = 8e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 264 tcaactggttcatcaaattctggctctgaa 293
           |||||||||||||||||||| | |||||||
Sbjct: 477 tcaactggttcatcaaattcagcctctgaa 506


 Score = 42.1 bits (21), Expect = 3e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 164 ttcaactggttcatcaaattc 184
           |||||||||||||||||||||
Sbjct: 476 ttcaactggttcatcaaattc 496


 Score = 38.2 bits (19), Expect = 0.005
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 166 caactggttcatcaaattc 184
           |||||||||||||||||||
Sbjct: 975 caactggttcatcaaattc 993


 Score = 38.2 bits (19), Expect = 0.005
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 265 caactggttcatcaaattc 283
           |||||||||||||||||||
Sbjct: 975 caactggttcatcaaattc 993


 Score = 36.2 bits (18), Expect = 0.020
 Identities = 27/30 (90%)
 Strand = Plus / Plus

                                         
Query: 264 tcaactggttcatcaaattctggctctgaa 293
           ||||||||||||||| |||| | |||||||
Sbjct: 609 tcaactggttcatcacattcagcctctgaa 638


 Score = 34.2 bits (17), Expect = 0.079
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 164 ttcaactggttcatcaaattc 184
           |||||||||||||||| ||||
Sbjct: 608 ttcaactggttcatcacattc 628


 Score = 34.2 bits (17), Expect = 0.079
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 259  aaggctcaactggttca 275
            |||||||||||||||||
Sbjct: 1137 aaggctcaactggttca 1153


 Score = 34.2 bits (17), Expect = 0.079
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 197 ttcaactgattcatcaaattc 217
           |||||||| ||||||||||||
Sbjct: 476 ttcaactggttcatcaaattc 496


 Score = 34.2 bits (17), Expect = 0.079
 Identities = 38/45 (84%)
 Strand = Plus / Plus

                                                         
Query: 132  tcaactgattcatcaaattctggctctcaaggttcaactggttca 176
            ||||||| ||||||| | ||||| ||  |||| ||||||||||||
Sbjct: 1109 tcaactggttcatcacaatctggatcagaaggctcaactggttca 1153


 Score = 34.2 bits (17), Expect = 0.079
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 164 ttcaactggttcatcaaattc 184
           |||||||||||||||| ||||
Sbjct: 542 ttcaactggttcatcacattc 562


 Score = 32.2 bits (16), Expect = 0.31
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 264 tcaactggttcatcaaattc 283
           ||||||||||||||| ||||
Sbjct: 543 tcaactggttcatcacattc 562


 Score = 32.2 bits (16), Expect = 0.31
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 103 ctggttcatcaaattc 118
           ||||||||||||||||
Sbjct: 481 ctggttcatcaaattc 496


 Score = 32.2 bits (16), Expect = 0.31
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 164  ttcaactggttcatca 179
            ||||||||||||||||
Sbjct: 1108 ttcaactggttcatca 1123


 Score = 32.2 bits (16), Expect = 0.31
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 103 ctggttcatcaaattc 118
           ||||||||||||||||
Sbjct: 978 ctggttcatcaaattc 993


 Score = 32.2 bits (16), Expect = 0.31
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 49  ctggttcatcaaattc 64
           ||||||||||||||||
Sbjct: 978 ctggttcatcaaattc 993


 Score = 32.2 bits (16), Expect = 0.31
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 49  ctggttcatcaaattc 64
           ||||||||||||||||
Sbjct: 481 ctggttcatcaaattc 496


 Score = 30.2 bits (15), Expect = 1.2
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 199 caactgattcatcaaattc 217
           |||||| ||||||||||||
Sbjct: 975 caactggttcatcaaattc 993


 Score = 30.2 bits (15), Expect = 1.2
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 133 caactgattcatcaaattc 151
           |||||| ||||||||||||
Sbjct: 975 caactggttcatcaaattc 993


 Score = 30.2 bits (15), Expect = 1.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 264  tcaactggttcatca 278
            |||||||||||||||
Sbjct: 1109 tcaactggttcatca 1123


>Contig-U02361-1 (Contig-U02361-1Q) /CSM_Contig/Contig-U02361-1Q.Seq.d
          Length = 1258

 Score = 36.2 bits (18), Expect = 0.020
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 11  aggttctcaatcaacttcaaat 32
           |||| |||||||||||||||||
Sbjct: 227 aggtactcaatcaacttcaaat 248


 Score = 34.2 bits (17), Expect = 0.079
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 70  ctcaatcaacttcaaat 86
           |||||||||||||||||
Sbjct: 232 ctcaatcaacttcaaat 248


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3763
Number of Sequences: 6905
Number of extensions: 3763
Number of successful extensions: 1366
Number of sequences better than 10.0: 67
length of query: 295
length of database: 5,674,871
effective HSP length: 15
effective length of query: 280
effective length of database: 5,571,296
effective search space: 1559962880
effective search space used: 1559962880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)

Query= Contig-U13446-1 (Contig-U13446-1Q) /CSM_Contig/Contig-U13446-1Q.Seq.d
         (295 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(U48298) Dictyostelium discoideum rtoA gene, complete cds.        585   e-163  1
(AC116032) Dictyostelium discoideum chromosome 2 map 4158743...   585   e-163  1
(BJ407898) Dictyostelium discoideum cDNA clone:dds44c02, 3' ...    38   2e-06  4
(BJ407877) Dictyostelium discoideum cDNA clone:dds43o19, 3' ...    38   2e-06  4
(BJ408699) Dictyostelium discoideum cDNA clone:dds46l17, 3' ...    38   2e-06  4
(BJ375127) Dictyostelium discoideum cDNA clone:ddc17d17, 3' ...    38   4e-06  4
(BJ408593) Dictyostelium discoideum cDNA clone:dds46h08, 3' ...    38   5e-06  4
(BJ397448) Dictyostelium discoideum cDNA clone:dds46h08, 5' ...    50   5e-05  3
(BJ361523) Dictyostelium discoideum cDNA clone:ddc17d17, 5' ...    38   5e-04  4
(CA451908) UI-M-FZ0-ccq-h-01-0-UI.r1 NIH_BMAP_FZ0 Mus muscul...    38   0.008  2
(AM448348) Vitis vinifera contig VV78X170413.5, whole genome...    28   0.016  5
(AM467463) Vitis vinifera contig VV78X221779.2, whole genome...    28   0.026  5
(BJ423652) Dictyostelium discoideum cDNA clone:ddv49o19, 5' ...    32   0.035  3
(AP008218) Oryza sativa (japonica cultivar-group) genomic DN...    36   0.077  2
(CU466930) Candidatus Cloacamonas acidaminovorans provisiona...    36   0.090  2
(AL713908) Oryza sativa chromosome 12, . BAC OSJNBa0011B18 o...    36   0.10   2
(EA704660) Sequence 83539 from patent US 7365185.                  36   0.12   2
(AM459079) Vitis vinifera contig VV78X145088.3, whole genome...    28   0.12   5
(AK059568) Oryza sativa Japonica Group cDNA clone:001-029-H1...    36   0.13   2
(CB671842) OSJNEe05J16.r OSJNEe Oryza sativa Japonica Group ...    36   0.13   2
(CB657472) OSJNEc12N06.r OSJNEc Oryza sativa Japonica Group ...    36   0.13   2
(CB672508) OSJNEe06J06.r OSJNEe Oryza sativa Japonica Group ...    36   0.13   2
(CA761805) BR060013A20F05.ab1 IRRI clones Oryza sativa Indic...    36   0.13   2
(CI140327) Oryza sativa Japonica Group cDNA, clone: 027-M121...    36   0.13   2
(CB652107) OSJNEc01J23.r OSJNEc Oryza sativa Japonica Group ...    36   0.13   2
(CR293099) Oryza sativa  cDNA clone:y715h10p3.                     36   0.13   2
(CR282275) Oryza sativa  cDNA clone:p712b11p3.                     36   0.13   2
(CF317099) HD--06-K16.g1 OsHDAC1-overexpressing transgenic r...    36   0.13   2
(CI081492) Oryza sativa Japonica Group cDNA, clone: 017-M045...    36   0.13   2
(CI051758) Oryza sativa Japonica Group cDNA, clone: 012-M088...    36   0.13   2
(CR282235) Oryza sativa  cDNA clone:p712b11p5.                     36   0.13   2
(CI066192) Oryza sativa Japonica Group cDNA, clone: 015-M021...    36   0.13   2
(CI082180) Oryza sativa Japonica Group cDNA, clone: 017-M056...    36   0.13   2
(CI067909) Oryza sativa Japonica Group cDNA, clone: 015-M046...    36   0.13   2
(CI179758) Oryza sativa Japonica Group cDNA, clone: 034-M071...    36   0.13   2
(CI023160) Oryza sativa Japonica Group cDNA, clone: 007-M096...    36   0.13   2
(BM038105) U002H01 Oryza sativa mature leaf library induced ...    36   0.13   2
(CI003949) Oryza sativa Japonica Group cDNA, clone: 003-M130...    36   0.13   2
(CI117503) Oryza sativa Japonica Group cDNA, clone: 023-M067...    36   0.13   2
(CI106856) Oryza sativa Japonica Group cDNA, clone: 021-M022...    36   0.13   2
(EA223182) Sequence 87497 from patent US 7214786.                  30   0.36   3
(CA648106) wre1n.pk0125.g5 wre1n Triticum aestivum cDNA clon...    30   0.36   3
(DE031328) Branchiostoma floridae DNA, clone: CH302-048M16.R...    26   0.39   4
(EY058163) CATF10930.rev CATF Artemisia annua, Tanzanian, fr...    26   0.48   4
(CB666223) OSJNEd13A13.r OSJNEd Oryza sativa Japonica Group ...    36   0.49   2
(EY058164) CATF10930.fwd CATF Artemisia annua, Tanzanian, fr...    26   0.52   4
(AQ254392) CpG0803B CpIOWAgDNA1 Cryptosporidium parvum genom...    26   0.65   4
(DE205614) Branchiostoma floridae DNA, clone: CH302-092_P05_...    26   0.66   4
(CX155096) TfEST027D02 Tf30924 cDNA Library Tritrichomonas f...    30   0.82   3
(BJ411605) Dictyostelium discoideum cDNA clone:ddv5g03, 5' e...    32   0.86   3
(EY113795) CAZI8527.fwd CAZI Artemisia annua normalized leaf...    26   0.95   4
(EA764448) Sequence 30 from patent US 7378278.                     34   0.98   3
(CS407640) Sequence 30 from Patent WO2006044508.                   34   0.98   3
(BJ363032) Dictyostelium discoideum cDNA clone:ddc24o14, 5' ...    32   0.99   3
(AC206115) Saccoglossus kowalevskii  BAC CUGI_SK_BA 001B6 (S...    34   1.4    2
(CA793910) AGENCOURT_11041637 NICHD_XGC_Emb1 Xenopus laevis ...    30   1.5    3
(BM600985) 17000687067174 A.Gam.ad.cDNA.blood1 Anopheles gam...    32   1.9    2
(CS538438) Sequence 87 from Patent WO2007022195.                   34   1.9    3
(AC018897) Homo sapiens BAC clone RP11-575J11 from 11, compl...    36   2.0    3
(C89968) Dictyostelium discoideum slug cDNA, clone SSG710.         34   2.1    2
(CR932060) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    40   2.3    3
(AA068778) mm64g02.r1 Stratagene mouse embryonic carcinoma (...    44   2.7    1
(AC231556) Lama pacos clone CH246-510L19, WORKING DRAFT SEQU...    40   2.9    3
(BW307726) Ciona intestinalis cDNA, clone:ciht017j14, 5' end...    28   3.4    3
(CX577076) TTE00032007 Amplicon Express - Conjugative Form T...    28   3.4    3
(DV112136) Cm_mx0_77g04_SP6 Green Shore Crab Multiple Tissue...    30   3.4    3
(DY656759) Cm_mx1_84g04_SP6 Green Shore Crab Multiple Tissue...    30   3.5    3
(DV466816) Cm_mx0_78c11_SP6 Green Shore Crab Multiple Tissue...    30   3.8    3
(BX548156) Oryza sativa genomic DNA, chromosome 4, BAC clone...    34   4.2    3
(CX588426) TTE00023277 Amplicon Express - Conjugative Form T...    28   4.5    3
(CX591022) TTE00029844 Amplicon Express - Conjugative Form T...    28   4.6    3
(EA764450) Sequence 32 from patent US 7378278.                     34   4.7    2
(CS407642) Sequence 32 from Patent WO2006044508.                   34   4.7    2
(CX591878) TTE00027666 Amplicon Express - Conjugative Form T...    28   4.8    3
(AC123625) Mus musculus chromosome 3, clone RP23-227N19, com...    30   4.9    2
(EA419704) Sequence 24 from patent US 7323556.                     34   5.0    2
(CS566037) Sequence 24 from Patent WO2006039376.                   34   5.0    2
(AC219015) Solanum tuberosum chromosome 6 clone RHPOTKEY197N...    30   5.1    2
(EA764447) Sequence 29 from patent US 7378278.                     34   5.1    2
(CS407639) Sequence 29 from Patent WO2006044508.                   34   5.1    2
(AC232077) Solanum tuberosum strain Diploid genotype RH89-03...    30   5.1    2
(AC231524) Solanum tuberosum chromosome 6 clone RHPOTKEY150K...    30   5.2    2
(AC111798) Rattus norvegicus clone CH230-211D19, WORKING DRA...    36   5.2    3
(CU915341) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   6.0    4
(EL447848) CHTM26575.b1_M19.ab1 CHT(LMS) Jerusalem artichoke...    32   6.8    2
(AC174532) Bos taurus clone CH240-390M21, WORKING DRAFT SEQU...    36   6.8    2
(AG551290) Mus musculus molossinus DNA, clone:MSMg01-467J24....    30   6.8    2
(CL707006) OR_BBa0025A13.r OR_BBa Oryza nivara genomic clone...    30   6.8    2
(FK846936) K05361G06 Karenia brevis Multi-strain Library Kar...    28   7.7    3
(EA419703) Sequence 23 from patent US 7323556.                     34   7.7    2
(CS566036) Sequence 23 from Patent WO2006039376.                   34   7.7    2
(AC133966) Homo sapiens chromosome UNK clone RP11-1222A2, WO...    42   8.3    2
(CN498153) E10_01709.AB1 Diabrotica virgifera virgifera midg...    28   8.5    3
(EK284576) 1095462308474 Global-Ocean-Sampling_GS-31-01-01-1...    36   9.2    2
(EJ608696) 1092962027761 Global-Ocean-Sampling_GS-29-01-01-1...    36   9.3    2
(DU062607) 79848 Tomato HindIII BAC Library Solanum lycopers...    38   9.5    2
(CN497841) D04_02044.AB1 Diabrotica virgifera virgifera midg...    28   9.5    3
(DU920153) 340126 Tomato EcoRI BAC Library Solanum lycopersi...    38   9.7    2
(AL984114) Danio rerio genomic clone DKEY-25I6, genomic surv...    28   9.7    3
(EJ608529) 1092962026225 Global-Ocean-Sampling_GS-29-01-01-1...    36   9.9    2

>(U48298) Dictyostelium discoideum rtoA gene, complete cds.
          Length = 2620

 Score =  585 bits (295), Expect = e-163
 Identities = 295/295 (100%)
 Strand = Plus / Plus


Query: 1    cttcaaattcaggttctcaatcaacttcaaattctggctctgaagcatctggttcatcaa 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1371 cttcaaattcaggttctcaatcaacttcaaattctggctctgaagcatctggttcatcaa 1430


Query: 61   attccggttctcaatcaacttcaaattctggctctgaagcatctggttcatcaaattctg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1431 attccggttctcaatcaacttcaaattctggctctgaagcatctggttcatcaaattctg 1490


Query: 121  gttctcaaagctcaactgattcatcaaattctggctctcaaggttcaactggttcatcaa 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1491 gttctcaaagctcaactgattcatcaaattctggctctcaaggttcaactggttcatcaa 1550


Query: 181  attctggttctcaaagttcaactgattcatcaaattctggttctcaaagctcaactgatt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1551 attctggttctcaaagttcaactgattcatcaaattctggttctcaaagctcaactgatt 1610


Query: 241  catccaattctggttctcaaggctcaactggttcatcaaattctggctctgaatc 295
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1611 catccaattctggttctcaaggctcaactggttcatcaaattctggctctgaatc 1665

 Score =  196 bits (99), Expect(3) = 3e-81
 Identities = 135/147 (91%)
 Strand = Plus / Plus


Query: 107  ttcatcaaattctggttctcaaagctcaactgattcatcaaattctggctctcaaggttc 166
            ||||||||||||||| |||||| | ||||||| ||||||||||||||| |||||| ||||
Sbjct: 1510 ttcatcaaattctggctctcaaggttcaactggttcatcaaattctggttctcaaagttc 1569


Query: 167  aactggttcatcaaattctggttctcaaagttcaactgattcatcaaattctggttctca 226
            ||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 1570 aactgattcatcaaattctggttctcaaagctcaactgattcatccaattctggttctca 1629


Query: 227  aagctcaactgattcatccaattctgg 253
            | ||||||||| |||||| ||||||||
Sbjct: 1630 aggctcaactggttcatcaaattctgg 1656

 Score =  127 bits (64), Expect(3) = 3e-81
 Identities = 70/72 (97%)
 Strand = Plus / Plus


Query: 3    tcaaattcaggttctcaatcaacttcaaattctggctctgaagcatctggttcatcaaat 62
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1427 tcaaattccggttctcaatcaacttcaaattctggctctgaagcatctggttcatcaaat 1486


Query: 63   tccggttctcaa 74
            || |||||||||
Sbjct: 1487 tctggttctcaa 1498

 Score = 40.1 bits (20), Expect(3) = 3e-81
 Identities = 26/28 (92%)
 Strand = Plus / Plus


Query: 268  ctggttcatcaaattctggctctgaatc 295
            |||||||||||||||| || ||||||||
Sbjct: 1698 ctggttcatcaaattcaggatctgaatc 1725

 Score =  196 bits (99), Expect(2) = 3e-78
 Identities = 135/147 (91%)
 Strand = Plus / Plus


Query: 140  ttcatcaaattctggctctcaaggttcaactggttcatcaaattctggttctcaaagttc 199
            ||||||||||||||| |||||| | ||||||| ||||||||||||||| |||||| ||||
Sbjct: 1477 ttcatcaaattctggttctcaaagctcaactgattcatcaaattctggctctcaaggttc 1536


Query: 200  aactgattcatcaaattctggttctcaaagctcaactgattcatccaattctggttctca 259
            ||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 1537 aactggttcatcaaattctggttctcaaagttcaactgattcatcaaattctggttctca 1596


Query: 260  aggctcaactggttcatcaaattctgg 286
            | ||||||||| |||||| ||||||||
Sbjct: 1597 aagctcaactgattcatccaattctgg 1623

 Score =  127 bits (64), Expect(2) = 3e-78
 Identities = 70/72 (97%)
 Strand = Plus / Plus


Query: 57   tcaaattccggttctcaatcaacttcaaattctggctctgaagcatctggttcatcaaat 116
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1373 tcaaattcaggttctcaatcaacttcaaattctggctctgaagcatctggttcatcaaat 1432


Query: 117  tctggttctcaa 128
            || |||||||||
Sbjct: 1433 tccggttctcaa 1444

 Score =  163 bits (82), Expect(3) = 2e-42
 Identities = 109/118 (92%)
 Strand = Plus / Plus


Query: 103  ctggttcatcaaattctggttctcaaagctcaactgattcatcaaattctggctctcaag 162
            |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 1539 ctggttcatcaaattctggttctcaaagttcaactgattcatcaaattctggttctcaaa 1598


Query: 163  gttcaactggttcatcaaattctggttctcaaagttcaactgattcatcaaattctgg 220
            | ||||||| |||||| ||||||||||||||| | ||||||| |||||||||||||||
Sbjct: 1599 gctcaactgattcatccaattctggttctcaaggctcaactggttcatcaaattctgg 1656

 Score = 40.1 bits (20), Expect(3) = 2e-42
 Identities = 26/28 (92%)
 Strand = Plus / Plus


Query: 268  ctggttcatcaaattctggctctgaatc 295
            ||||||||||||| ||||| ||||||||
Sbjct: 1830 ctggttcatcaaactctggatctgaatc 1857

 Score = 30.2 bits (15), Expect(3) = 2e-42
 Identities = 15/15 (100%)
 Strand = Plus / Plus


Query: 81   tcaaattctggctct 95
            |||||||||||||||
Sbjct: 1514 tcaaattctggctct 1528

 Score =  137 bits (69), Expect(4) = 3e-41
 Identities = 78/81 (96%)
 Strand = Plus / Plus


Query: 107  ttcatcaaattctggttctcaaagctcaactgattcatcaaattctggctctcaaggttc 166
            ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 1576 ttcatcaaattctggttctcaaagctcaactgattcatccaattctggttctcaaggctc 1635


Query: 167  aactggttcatcaaattctgg 187
            |||||||||||||||||||||
Sbjct: 1636 aactggttcatcaaattctgg 1656

 Score = 44.1 bits (22), Expect(4) = 3e-41
 Identities = 25/26 (96%)
 Strand = Plus / Plus


Query: 49   ctggttcatcaaattccggttctcaa 74
            |||||||||||||||| |||||||||
Sbjct: 1539 ctggttcatcaaattctggttctcaa 1564

 Score = 40.1 bits (20), Expect(4) = 3e-41
 Identities = 26/28 (92%)
 Strand = Plus / Plus


Query: 268  ctggttcatcaaattctggctctgaatc 295
            ||||||||||||| ||||| ||||||||
Sbjct: 1797 ctggttcatcaaactctggatctgaatc 1824

 Score = 30.2 bits (15), Expect(4) = 3e-41
 Identities = 15/15 (100%)
 Strand = Plus / Plus


Query: 27   tcaaattctggctct 41
            |||||||||||||||
Sbjct: 1514 tcaaattctggctct 1528

 Score =  137 bits (69), Expect(3) = 3e-39
 Identities = 78/81 (96%)
 Strand = Plus / Plus


Query: 206  ttcatcaaattctggttctcaaagctcaactgattcatccaattctggttctcaaggctc 265
            ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 1477 ttcatcaaattctggttctcaaagctcaactgattcatcaaattctggctctcaaggttc 1536


Query: 266  aactggttcatcaaattctgg 286
            |||||||||||||||||||||
Sbjct: 1537 aactggttcatcaaattctgg 1557

 Score = 44.1 bits (22), Expect(3) = 3e-39
 Identities = 25/26 (96%)
 Strand = Plus / Plus


Query: 169  ctggttcatcaaattctggttctcaa 194
            |||||||||||||||| |||||||||
Sbjct: 1419 ctggttcatcaaattccggttctcaa 1444

 Score = 30.2 bits (15), Expect(3) = 3e-39
 Identities = 15/15 (100%)
 Strand = Plus / Plus


Query: 144  tcaaattctggctct 158
            |||||||||||||||
Sbjct: 1397 tcaaattctggctct 1411

 Score =  163 bits (82), Expect(2) = 4e-39
 Identities = 109/118 (92%)
 Strand = Plus / Plus


Query: 169  ctggttcatcaaattctggttctcaaagttcaactgattcatcaaattctggttctcaaa 228
            |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 1473 ctggttcatcaaattctggttctcaaagctcaactgattcatcaaattctggctctcaag 1532


Query: 229  gctcaactgattcatccaattctggttctcaaggctcaactggttcatcaaattctgg 286
            | ||||||| |||||| ||||||||||||||| | ||||||| |||||||||||||||
Sbjct: 1533 gttcaactggttcatcaaattctggttctcaaagttcaactgattcatcaaattctgg 1590

 Score = 30.2 bits (15), Expect(2) = 4e-39
 Identities = 15/15 (100%)
 Strand = Plus / Plus


Query: 144  tcaaattctggctct 158
            |||||||||||||||
Sbjct: 1451 tcaaattctggctct 1465

 Score = 79.8 bits (40), Expect(4) = 9e-23
 Identities = 49/52 (94%)
 Strand = Plus / Plus


Query: 107  ttcatcaaattctggttctcaaagctcaactgattcatcaaattctggctct 158
            |||||| ||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 1609 ttcatccaattctggttctcaaggctcaactggttcatcaaattctggctct 1660

 Score = 40.1 bits (20), Expect(4) = 9e-23
 Identities = 26/28 (92%)
 Strand = Plus / Plus


Query: 268  ctggttcatcaaattctggctctgaatc 295
            ||||||| ||||||||||| ||||||||
Sbjct: 1863 ctggttcttcaaattctggatctgaatc 1890

 Score = 36.2 bits (18), Expect(4) = 9e-23
 Identities = 21/22 (95%)
 Strand = Plus / Plus


Query: 53   ttcatcaaattccggttctcaa 74
            |||||||||||| |||||||||
Sbjct: 1576 ttcatcaaattctggttctcaa 1597

 Score = 32.2 bits (16), Expect(4) = 9e-23
 Identities = 16/16 (100%)
 Strand = Plus / Plus


Query: 169  ctggttcatcaaattc 184
            ||||||||||||||||
Sbjct: 1698 ctggttcatcaaattc 1713

 Score = 79.8 bits (40), Expect(2) = 4e-16
 Identities = 49/52 (94%)
 Strand = Plus / Plus


Query: 239  ttcatccaattctggttctcaaggctcaactggttcatcaaattctggctct 290
            |||||| ||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 1477 ttcatcaaattctggttctcaaagctcaactgattcatcaaattctggctct 1528

 Score = 36.2 bits (18), Expect(2) = 4e-16
 Identities = 21/22 (95%)
 Strand = Plus / Plus


Query: 206  ttcatcaaattctggttctcaa 227
            |||||||||||| |||||||||
Sbjct: 1423 ttcatcaaattccggttctcaa 1444

 Score = 46.1 bits (23), Expect(4) = 1e-13
 Identities = 32/35 (91%)
 Strand = Plus / Plus


Query: 27   tcaaattctggctctgaagcatctggttcatcaaa 61
            |||||||||||||||||| |||| || ||||||||
Sbjct: 1646 tcaaattctggctctgaatcatcaggctcatcaaa 1680

 Score = 44.1 bits (22), Expect(4) = 1e-13
 Identities = 34/38 (89%)
 Strand = Plus / Plus


Query: 81   tcaaattctggctctgaagcatctggttcatcaaattc 118
            ||||| ||||| || ||| |||||||||||||||||||
Sbjct: 1676 tcaaactctggatccgaatcatctggttcatcaaattc 1713

 Score = 34.2 bits (17), Expect(4) = 1e-13
 Identities = 65/81 (80%)
 Strand = Plus / Plus


Query: 140  ttcatcaaattctggctctcaaggttcaactggttcatcaaattctggttctcaaagttc 199
            ||||||||| ||||| ||| ||   ||| ||||||||||||| ||||| ||| ||   ||
Sbjct: 1801 ttcatcaaactctggatctgaatcatcatctggttcatcaaactctggatctgaatcatc 1860


Query: 200  aactgattcatcaaattctgg 220
            | ||| ||| |||||||||||
Sbjct: 1861 atctggttcttcaaattctgg 1881

 Score = 32.2 bits (16), Expect(4) = 1e-13
 Identities = 19/20 (95%)
 Strand = Plus / Plus


Query: 276  tcaaattctggctctgaatc 295
            ||||||||||| ||||||||
Sbjct: 1937 tcaaattctggatctgaatc 1956

 Score = 48.1 bits (24), Expect(2) = 6e-08
 Identities = 72/88 (81%)
 Strand = Plus / Plus


Query: 100  catctggttcatcaaattctggttctcaaagctcaactgattcatcaaattctggctctc 159
            |||||||||||||||| ||||| ||| ||   ||| ||| ||||||||| ||||| |||
Sbjct: 1794 catctggttcatcaaactctggatctgaatcatcatctggttcatcaaactctggatctg 1853


Query: 160  aaggttcaactggttcatcaaattctgg 187
            ||   ||| ||||||| |||||||||||
Sbjct: 1854 aatcatcatctggttcttcaaattctgg 1881

 Score = 46.1 bits (23), Expect(2) = 6e-08
 Identities = 44/51 (86%)
 Strand = Plus / Plus


Query: 27   tcaaattctggctctgaagcatctggttcatcaaattccggttctcaatca 77
            ||||| ||||| || ||| ||||||||||||||||||| || ||| |||||
Sbjct: 1676 tcaaactctggatccgaatcatctggttcatcaaattcaggatctgaatca 1726

 Score = 50.1 bits (25), Expect(3) = 2e-06
 Identities = 37/41 (90%)
 Strand = Plus / Plus


Query: 81   tcaaattctggctctgaagcatctggttcatcaaattctgg 121
            |||||||||||||||||| |||| || |||||||| |||||
Sbjct: 1646 tcaaattctggctctgaatcatcaggctcatcaaactctgg 1686

 Score = 50.1 bits (25), Expect(3) = 2e-06
 Identities = 37/41 (90%)
 Strand = Plus / Plus


Query: 81   tcaaattctggctctgaagcatctggttcatcaaattctgg 121
            ||||||||||| |||||| ||||||| |||||||| |||||
Sbjct: 1937 tcaaattctggatctgaatcatctggatcatcaaactctgg 1977

 Score = 34.2 bits (17), Expect(3) = 2e-06
 Identities = 23/25 (92%)
 Strand = Plus / Plus


Query: 25   cttcaaattctggctctgaagcatc 49
            ||||||||||||| |||||| ||||
Sbjct: 1869 cttcaaattctggatctgaatcatc 1893

 Score = 32.2 bits (16), Expect(3) = 2e-06
 Identities = 43/52 (82%)
 Strand = Plus / Plus


Query: 169  ctggttcatcaaattctggttctcaaagttcaactgattcatcaaattctgg 220
            ||||||||||||| ||||| ||| ||   ||| ||| ||||||||| |||||
Sbjct: 1797 ctggttcatcaaactctggatctgaatcatcatctggttcatcaaactctgg 1848

 Score = 28.2 bits (14), Expect(3) = 2e-06
 Identities = 20/22 (90%)
 Strand = Plus / Plus


Query: 53   ttcatcaaattccggttctcaa 74
            |||||||||||| || ||||||
Sbjct: 1510 ttcatcaaattctggctctcaa 1531

 Score = 26.3 bits (13), Expect(3) = 2e-06
 Identities = 19/21 (90%)
 Strand = Plus / Plus


Query: 3    tcaaattcaggttctcaatca 23
            ||||||||||| ||| |||||
Sbjct: 1706 tcaaattcaggatctgaatca 1726

 Score = 36.2 bits (18), Expect(2) = 0.033
 Identities = 21/22 (95%)
 Strand = Plus / Plus


Query: 100  catctggttcatcaaattctgg 121
            |||||||||| |||||||||||
Sbjct: 1860 catctggttcttcaaattctgg 1881

 Score = 32.2 bits (16), Expect(2) = 0.033
 Identities = 16/16 (100%)
 Strand = Plus / Plus


Query: 46   catctggttcatcaaa 61
            ||||||||||||||||
Sbjct: 1827 catctggttcatcaaa 1842

 Score = 38.2 bits (19), Expect(2) = 0.14
 Identities = 46/55 (83%)
 Strand = Plus / Plus


Query: 100  catctggttcatcaaattctggttctcaaagctcaactgattcatcaaattctgg 154
            |||||||||||||||| ||||| ||| ||   ||| ||| ||| |||||||||||
Sbjct: 1827 catctggttcatcaaactctggatctgaatcatcatctggttcttcaaattctgg 1881

 Score = 34.2 bits (17), Expect(2) = 0.14
 Identities = 26/29 (89%)
 Strand = Plus / Plus


Query: 49   ctggttcatcaaattccggttctcaatca 77
            |||||||||||||||| || ||| |||||
Sbjct: 1638 ctggttcatcaaattctggctctgaatca 1666

 Score = 46.1 bits (23), Expect = 0.68
 Identities = 32/35 (91%)
 Strand = Plus / Plus


Query: 27   tcaaattctggctctgaagcatctggttcatcaaa 61
            ||||||||||| |||||| ||||||| ||||||||
Sbjct: 1937 tcaaattctggatctgaatcatctggatcatcaaa 1971

 Score = 38.2 bits (19), Expect(2) = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus


Query: 268  ctggttcatcaaattctgg 286
            |||||||||||||||||||
Sbjct: 1473 ctggttcatcaaattctgg 1491

 Score = 34.2 bits (17), Expect(2) = 7.3
 Identities = 23/25 (92%)
 Strand = Plus / Plus


Query: 79   cttcaaattctggctctgaagcatc 103
            ||||||||||||| |||||| ||||
Sbjct: 1869 cttcaaattctggatctgaatcatc 1893

 Score = 32.2 bits (16), Expect(2) = 7.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus


Query: 46   catctggttcatcaaa 61
            ||||||||||||||||
Sbjct: 1794 catctggttcatcaaa 1809

 Score = 28.2 bits (14), Expect(2) = 7.3
 Identities = 20/22 (90%)
 Strand = Plus / Plus


Query: 140  ttcatcaaattctggctctcaa 161
            |||||||||||| || ||||||
Sbjct: 1423 ttcatcaaattccggttctcaa 1444

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 332,358,120
Number of extensions: 19119441
Number of successful extensions: 1458391
Number of sequences better than 10.0: 100
Length of query: 295
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 272
Effective length of database: 93,106,754,628
Effective search space: 25325037258816
Effective search space used: 25325037258816
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

Query= Contig-U13446-1 (Contig-U13446-1Q) /CSM_Contig/Contig-U13446-1Q.Seq.d
         (295 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF063866_232(AF063866|pid:none) Melanoplus sanguinipes entomopox...    40   0.019
AF315353_1(AF315353|pid:none) Mus musculus zinc finger protein s...    35   0.62
T31613(T31613)hypothetical protein Y50E8A.i - Caenorhabditis ele...    35   0.81
AM269894_69(AM269894|pid:none) Eimeria tenella chromosome 1, ord...    34   1.8
AM263198_1234(AM263198|pid:none) Listeria welshimeri serovar 6b ...    33   3.1
AY333435_1(AY333435|pid:none) Periplaneta americana FMRFamide-li...    33   3.1
AL031745_101(AL031745|pid:none) Plasmodium falciparum DNA from M...    32   5.3
(Q9ER74) RecName: Full=Sal-like protein 1; AltName: Full=Zinc fi...    32   6.9
AB051409_1(AB051409|pid:none) Mus musculus mRNA for zinc finger ...    32   6.9
BC062937_1(BC062937|pid:none) Mus musculus sal-like 1 (Drosophil...    32   6.9

>AF063866_232(AF063866|pid:none) Melanoplus sanguinipes
           entomopoxvirus, complete genome.  &T28393(T28393)
          Length = 94

 Score = 40.4 bits (93), Expect = 0.019
 Identities = 32/65 (49%), Positives = 46/65 (70%), Gaps = 4/65 (6%)
 Frame = +1

Query: 109 HQILVLKAQLI-HQILALKVQLV-HQILVLKVQLI-HQILVLKAQLI-HPILVLKAQLVH 276
           H+IL+LK  L+ H+IL LK+ L+ H+IL+LK+ L+ H+IL+LK  L+ H IL  K    H
Sbjct: 3   HKILILKLILMNHKILILKLILMNHKILILKLILMNHKILILKLILMNHKILNRKKN--H 60

Query: 277 QILAL 291
           +IL L
Sbjct: 61  KILIL 65

 Score = 37.4 bits (85), Expect = 0.16
 Identities = 29/65 (44%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
 Frame = +1

Query: 73  NQLQILALKHLVHQILVLKAQLI-HQILALKVQLV-HQILVLKVQLI-HQILVLKAQLIH 243
           +++ IL L  + H+IL+LK  L+ H+IL LK+ L+ H+IL+LK+ L+ H+IL  K    H
Sbjct: 3   HKILILKLILMNHKILILKLILMNHKILILKLILMNHKILILKLILMNHKILNRKKN--H 60

Query: 244 PILVL 258
            IL+L
Sbjct: 61  KILIL 65

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 265,423,154
Number of extensions: 4481883
Number of successful extensions: 11429
Number of sequences better than 10.0: 10
Number of HSP's gapped: 11307
Number of HSP's successfully gapped: 12
Length of query: 98
Length of database: 1,051,180,864
Length adjustment: 67
Effective length of query: 31
Effective length of database: 834,331,411
Effective search space: 25864273741
Effective search space used: 25864273741
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 28 (15.4 bits)

 psg: 0.77  gvh: 0.68  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U13446-1 is cyt