Contig-U13443-1 |
Contig ID |
Contig-U13443-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1411 |
Chromosome number (1..6, M) |
- |
Chromosome length |
- |
Start point |
- |
End point |
- |
Strand (PLUS/MINUS) |
- |
Number of clones |
27 |
Number of EST |
36 |
Link to clone list |
U13443 |
List of clone(s) |
est1=SFK712F,1,108 est2=VFE551F,2,146 est3=CFG253F,6,112 est4=AFC562F,8,132 est5=SFJ169F,8,111 est6=SFJ736F,8,110 est7=SSL103F,10,598 est8=AFD686F,19,127 est9=VSJ735Z,54,582 est10=AFG687F,84,659 est11=CFG349F,165,606 est12=SFG565F,324,942 est13=VSC304Z,549,1133 est14=VFN644Z,722,1387 est15=SHE721E,737,1393 est16=AFG687Z,749,1389 est17=SLH341Z,758,1405 est18=SFC807Z,784,1386 est19=VFA863Z,821,1390 est20=CFG349Z,951,1387 est21=SSG705E,958,1411 est22=SLH135Z,963,1409 est23=CFG253Z,967,1391 est24=SFK712Z,1011,1385 est25=AFF743Z,1014,1373 est26=SFC789Z,1015,1237 est27=AFC232Z,1016,1384 est28=SFJ736Z,1020,1314 est29=SFF823Z,1021,1388 est30=VFD730Z,1021,1391 est31=SFG565Z,1022,1391 est32=CFC194Z,1028,1296 est33=AFC562Z,1080,1389 est34=AFE360Z,1083,1390 est35=AFD686Z,1096,1310 est36=VFE551Z,1123,1307
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Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.13 |
Homology vs DNA |
Query= Contig-U13443-1 (Contig-U13443-1Q) /CSM_Contig/Contig-U13443-1Q.Seq.d (1411 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AF305060) Dictyostelium discoideum Wiscott-Aldrich syndrome... 529 0.0 10 (BJ390978) Dictyostelium discoideum cDNA clone:dds14a17, 5' ... 529 0.0 3 (BJ325511) Dictyostelium discoideum cDNA clone:dda14m22, 5' ... 577 0.0 4 (BJ435781) Dictyostelium discoideum cDNA clone:ddv28g12, 3' ... 404 0.0 5 (AU270389) Dictyostelium discoideum vegetative cDNA clone:VS... 529 0.0 2 (AU039281) Dictyostelium discoideum slug cDNA, clone SLH341. 404 0.0 5 (BJ393918) Dictyostelium discoideum cDNA clone:dds33j05, 5' ... 404 0.0 5 (BJ405823) Dictyostelium discoideum cDNA clone:dds33j05, 3' ... 404 0.0 5 (BJ359233) Dictyostelium discoideum cDNA clone:ddc13b13, 5' ... 420 0.0 2 (AU262462) Dictyostelium discoideum vegetative cDNA clone:VS... 529 0.0 4 (BJ342636) Dictyostelium discoideum cDNA clone:dda14m22, 3' ... 404 0.0 5 (BJ399481) Dictyostelium discoideum cDNA clone:dds6n02, 3' e... 404 e-158 5 (C89964) Dictyostelium discoideum slug cDNA, clone SSG705. 404 e-151 4 (AU039202) Dictyostelium discoideum slug cDNA, clone SLH135. 404 e-150 4 (BJ372664) Dictyostelium discoideum cDNA clone:ddc13i14, 3' ... 404 e-126 5 (BJ372637) Dictyostelium discoideum cDNA clone:ddc13b13, 3' ... 404 e-125 3 (BJ401083) Dictyostelium discoideum cDNA clone:dds22h03, 3' ... 404 e-124 3 (BJ347276) Dictyostelium discoideum cDNA clone:dda26j18, 3' ... 404 e-124 3 (BJ341152) Dictyostelium discoideum cDNA clone:dda5o08, 3' e... 404 e-124 2 (BJ430702) Dictyostelium discoideum cDNA clone:ddv8l07, 3' e... 404 e-123 3 (BJ398370) Dictyostelium discoideum cDNA clone:dds12n06, 3' ... 404 e-123 3 (BJ400723) Dictyostelium discoideum cDNA clone:dds14a17, 3' ... 396 e-122 3 (BJ342117) Dictyostelium discoideum cDNA clone:dda9h15, 3' e... 394 e-121 3 (BJ429201) Dictyostelium discoideum cDNA clone:ddv2n16, 3' e... 404 e-120 4 (BJ341434) Dictyostelium discoideum cDNA clone:dda6k15, 3' e... 371 e-110 3 (BJ340255) Dictyostelium discoideum cDNA clone:dda12f11, 3' ... 404 e-108 2 (BJ402063) Dictyostelium discoideum cDNA clone:dds20h09, 3' ... 404 e-108 1 (BJ374019) Dictyostelium discoideum cDNA clone:ddc5k23, 3' e... 404 e-108 1 (BJ341950) Dictyostelium discoideum cDNA clone:dda8k22, 3' e... 329 2e-85 1 (BJ428036) Dictyostelium discoideum cDNA clone:ddv10e13, 3' ... 303 1e-77 1 (AU074492) Dictyostelium discoideum slug cDNA, clone SSL103. 276 5e-74 2 (BJ399625) Dictyostelium discoideum cDNA clone:dds6b23, 3' e... 202 4e-63 3 (AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 70 2e-08 6 (BJ409918) Dictyostelium discoideum cDNA clone:ddv10e13, 5' ... 48 4e-06 2 (CN563418) taf88c11.x2 Hydra EST -Kiel 1 Hydra magnipapillat... 52 0.059 1 (CN563408) taf88b02.x2 Hydra EST -Kiel 1 Hydra magnipapillat... 52 0.059 1 (CN563059) taf82f04.x2 Hydra EST -Kiel 1 Hydra magnipapillat... 52 0.059 1 (BX908387) Zebrafish DNA sequence from clone DKEY-45B6 in li... 50 0.23 1 (BX569789) Zebrafish DNA sequence from clone DKEY-68O6 in li... 50 0.23 1 (AC006250) Arabidopsis thaliana chromosome 2 clone T6A13 map... 50 0.23 1 (AR670188) Sequence 11 from patent US 6900306. 50 0.23 1 (AL035476) Plasmodium falciparum MAL4P3. 50 0.23 1 (AL136293) Human chromosome 14 DNA sequence BAC C-2555C10 of... 50 0.23 1 (AC217786) Homo sapiens FOSMID clone ABC13-48591800F23 from ... 50 0.23 1 (AC156177) Bos taurus clone CH240-52B22, WORKING DRAFT SEQUE... 50 0.23 1 (CU856173) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 50 0.23 1 (CU462849) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 50 0.23 1 (CR790370) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 50 0.23 1 (AC222110) Bos taurus clone CH240-371H19, WORKING DRAFT SEQU... 50 0.23 1 (AC220684) Bos taurus clone CH240-349L14, WORKING DRAFT SEQU... 50 0.23 1 (AC185862) Bos taurus clone RP42-93G12, WORKING DRAFT SEQUEN... 50 0.23 1 (AC185824) Bos taurus clone RP42-178I10, WORKING DRAFT SEQUE... 50 0.23 1 (AC173164) Bos taurus clone CH240-164L20, WORKING DRAFT SEQU... 50 0.23 1 (AC166000) Callithrix jacchus clone CH259-210B18, WORKING DR... 50 0.23 1 (BZ504492) BONFQ63TF BO_1.6_2_KB_tot Brassica oleracea genom... 50 0.23 1 (BH587033) BOHPB95TR BOHP Brassica oleracea genomic clone BO... 50 0.23 1 (BQ258443) fz79g06.y1 Sugano SJD adult male Danio rerio cDNA... 50 0.23 1 (AC104134) Homo sapiens BAC clone RP11-525L16 from 2, comple... 46 0.37 5 (AP004625) Lotus japonicus genomic DNA, chromosome 5, clone:... 38 0.51 2 (DE261308) Oryzias latipes DNA, clone: ola1-148I01.F, genomi... 38 0.66 2 (DH199974) Oryzias latipes Fosmid clone:GOLWFno491_c09, reve... 38 0.67 2 (AC157149) Bos taurus clone CH240-67G13, WORKING DRAFT SEQUE... 48 0.91 2 (CR385035) Zebrafish DNA sequence from clone DKEY-182I1 in l... 48 0.91 1 (BC122929) Xenopus tropicalis cDNA clone IMAGE:7685974. 48 0.91 1 (AM459740) Vitis vinifera contig VV78X120395.27, whole genom... 48 0.91 1 (AL929359) Plasmodium falciparum strain 3D7, chromosome 9; s... 48 0.91 1 (AE001391) Plasmodium falciparum 3D7 chromosome 2 section 28... 48 0.91 1 (AC119035) Homo sapiens 3 BAC RP11-445E17 (Roswell Park Canc... 48 0.91 1 (AC117461) Homo sapiens 3 BAC RP11-346H19 (Roswell Park Canc... 48 0.91 1 (AC092718) Homo sapiens chromosome 16 clone RP11-303E16, com... 48 0.91 1 (AC009079) Homo sapiens chromosome 16 clone RP11-340B7, comp... 48 0.91 1 (AC161893) Bos taurus clone CH240-114F21, WORKING DRAFT SEQU... 48 0.91 1 (AC160092) Bos taurus clone CH240-81H21, WORKING DRAFT SEQUE... 48 0.91 1 (AC156154) Bos taurus clone CH240-46P3, WORKING DRAFT SEQUEN... 48 0.91 1 (CU861543) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.91 1 (AC084362) Homo sapiens chromosome 12q clone RP11-406C14, WO... 48 0.91 1 (CU407334) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.91 1 (CR855129) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.91 1 (AC231683) Mustela putorius furo clone CH237-524M18, WORKING... 48 0.91 1 (AC229612) Mustela putorius furo clone CH237-505N19, WORKING... 48 0.91 1 (AC226240) Zea mays chromosome 4 clone CH201-175I9; ZMMBBc01... 48 0.91 1 (AC224476) Bos taurus clone CH240-483M1, WORKING DRAFT SEQUE... 48 0.91 1 (AC216193) Zea mays chromosome 4 clone ZMMBBb-629P6; ZMMBBb0... 48 0.91 1 (AC182314) Bos taurus clone CH240-515F10, WORKING DRAFT SEQU... 48 0.91 1 (FH330002) CHO_OF4569xg12r1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.91 1 (FH329922) CHO_OF4569xg12f1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.91 1 (EJ637157) 1093005301071 Global-Ocean-Sampling_GS-29-01-01-1... 48 0.91 1 (EJ636217) 1092995301516 Global-Ocean-Sampling_GS-29-01-01-1... 48 0.91 1 (EJ608816) 1092962028187 Global-Ocean-Sampling_GS-29-01-01-1... 48 0.91 1 (EI368773) POTBR84TR Solanum tuberosum RHPOTKEY BAC ends Sol... 48 0.91 1 (DU808867) OG_ABa0093C08.r OG_ABa Oryza granulata genomic cl... 48 0.91 1 (CC400957) PUHOA23TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 48 0.91 1 (BZ698223) PUCDB83TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 48 0.91 1 (BH972106) odj33g03.b1 B.oleracea002 Brassica oleracea genom... 48 0.91 1 (ES684276) CCAX7717.g1 NICHD_XGC_tropEye1 Xenopus (Silurana)... 48 0.91 1 (EL714636) CBSU9900.rev NICHD_XGC_tropLimb_m Xenopus (Silura... 48 0.91 1 (DR861678) JGI_CABG6438.rev NIH_XGC_tropSto1 Xenopus (Silura... 48 0.91 1 (DR836046) JGI_CABC6042.rev NIH_XGC_tropFat1 Xenopus (Silura... 48 0.91 1 (CX983425) JGI_CAAP13532.rev NIH_XGC_tropInt1 Xenopus (Silur... 48 0.91 1 (CX941293) JGI_CAAO7602.rev NIH_XGC_tropTe5 Xenopus (Siluran... 48 0.91 1
>(AF305060) Dictyostelium discoideum Wiscott-Aldrich syndrome protein (wasA) gene, complete cds. Length = 1741
Score = 529 bits (267), Expect(10) = 0.0 Identities = 267/267 (100%) Strand = Plus / Plus
Query: 611 gttttatgtctaaattcttttcatcggaagagaaagatttggaaatttcagctccaacca 670 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 933 gttttatgtctaaattcttttcatcggaagagaaagatttggaaatttcagctccaacca 992
Query: 671 actttaaacatgaaagtcatattggttgggatccagagaatggttttgatattaagaata 730 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 993 actttaaacatgaaagtcatattggttgggatccagagaatggttttgatattaagaata 1052
Query: 731 tcccaccagattggagaaaacttttccaatctgctggtattaagaagagtgaattaaaga 790 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1053 tcccaccagattggagaaaacttttccaatctgctggtattaagaagagtgaattaaaga 1112
Query: 791 atgcagaaactgctcaattcattgtcaatatcattggtgaacaaatggttggtggttcag 850 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1113 atgcagaaactgctcaattcattgtcaatatcattggtgaacaaatggttggtggttcag 1172
Query: 851 ctccaccaccaactcaaccaggtagat 877 ||||||||||||||||||||||||||| Sbjct: 1173 ctccaccaccaactcaaccaggtagat 1199
Score = 454 bits (229), Expect(10) = 0.0 Identities = 229/229 (100%) Strand = Plus / Plus
Query: 111 gtatatatatatttaaattttatttaaatgggtagtccaactattagtgatcaagaaaaa 170 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 226 gtatatatatatttaaattttatttaaatgggtagtccaactattagtgatcaagaaaaa 285
Query: 171 tcccaagttgcctttatagcaggtagtagttctgatattcattcaactactgttgcaaga 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 286 tcccaagttgcctttatagcaggtagtagttctgatattcattcaactactgttgcaaga 345
Query: 231 ttgtatgaaggtagacaaggaagatgggaatttatggccgtcggtattgtttctgttgtt 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 346 ttgtatgaaggtagacaaggaagatgggaatttatggccgtcggtattgtttctgttgtt 405
Query: 291 tcaaatcgtgtagataaaacaaattatatcaaagttttcgatttaaagg 339 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 406 tcaaatcgtgtagataaaacaaattatatcaaagttttcgatttaaagg 454
Score = 404 bits (204), Expect(10) = 0.0 Identities = 204/204 (100%) Strand = Plus / Plus
Query: 1079 atggccagtgctcctccatcatcaggaggtggtggtgccagcggcggtggaagaaatgat 1138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1400 atggccagtgctcctccatcatcaggaggtggtggtgccagcggcggtggaagaaatgat 1459
Query: 1139 cttttggcttccattcgtagtggtgcaagtcttaaggctgttgataaaaccaatccactc 1198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1460 cttttggcttccattcgtagtggtgcaagtcttaaggctgttgataaaaccaatccactc 1519
Query: 1199 ccagatattcaaagtcttggtaatgaaggttcacgttctttagctgatactttagctgca 1258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1520 ccagatattcaaagtcttggtaatgaaggttcacgttctttagctgatactttagctgca 1579
Query: 1259 gctatggctaatcgtagaggtggt 1282 |||||||||||||||||||||||| Sbjct: 1580 gctatggctaatcgtagaggtggt 1603
Score = 281 bits (142), Expect(10) = 0.0 Identities = 142/142 (100%) Strand = Plus / Plus
Query: 415 gcatttgaaggtgattcctgtgtttatggcttatcatttgctgatgtaactgaagcagct 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 651 gcatttgaaggtgattcctgtgtttatggcttatcatttgctgatgtaactgaagcagct 710
Query: 475 gaattctatggccaacttttaaattgtaaacaaggaaatattggtaaaactgctgcaatt 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 711 gaattctatggccaacttttaaattgtaaacaaggaaatattggtaaaactgctgcaatt 770
Query: 535 aatccaaatacttcttcaacca 556 |||||||||||||||||||||| Sbjct: 771 aatccaaatacttcttcaacca 792
Score = 145 bits (73), Expect(10) = 0.0 Identities = 73/73 (100%) Strand = Plus / Plus
Query: 335 aaaggccaactacagaatcatttttgaacaagaaatttatgacacttttgaatttcaaaa 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 572 aaaggccaactacagaatcatttttgaacaagaaatttatgacacttttgaatttcaaaa 631
Query: 395 acaaagagatttc 407 ||||||||||||| Sbjct: 632 acaaagagatttc 644
Score = 75.8 bits (38), Expect(10) = 0.0 Identities = 38/38 (100%) Strand = Plus / Plus
Query: 1374 tcattaaataaagatttctttatttctttcaccaaaaa 1411 |||||||||||||||||||||||||||||||||||||| Sbjct: 1694 tcattaaataaagatttctttatttctttcaccaaaaa 1731
Score = 73.8 bits (37), Expect(10) = 0.0 Identities = 37/37 (100%) Strand = Plus / Plus
Query: 981 taagacacctgcagctccaccatcaggcggaggtgct 1017 ||||||||||||||||||||||||||||||||||||| Sbjct: 1303 taagacacctgcagctccaccatcaggcggaggtgct 1339
Score = 67.9 bits (34), Expect(10) = 0.0 Identities = 34/34 (100%) Strand = Plus / Plus
Query: 1333 attattaaattattctttaacaaaattcaaattc 1366 |||||||||||||||||||||||||||||||||| Sbjct: 1653 attattaaattattctttaacaaaattcaaattc 1686
Score = 50.1 bits (25), Expect(10) = 0.0 Identities = 25/25 (100%) Strand = Plus / Plus
Query: 557 aaattactgcatcaacaccagcacc 581 ||||||||||||||||||||||||| Sbjct: 879 aaattactgcatcaacaccagcacc 903
Score = 36.2 bits (18), Expect(10) = 0.0 Identities = 18/18 (100%) Strand = Plus / Plus
Query: 82 ataataattaaatagagt 99 |||||||||||||||||| Sbjct: 197 ataataattaaatagagt 214
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,404,228,644 Number of extensions: 117932911 Number of successful extensions: 8226604 Number of sequences better than 10.0: 199 Length of query: 1411 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1387 Effective length of database: 97,308,875,965 Effective search space: 134967410963455 Effective search space used: 134967410963455 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 7 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
2 |
VH (FL, L) |
0 |
VF (FL, S) |
4 |
AH (FL, L) |
0 |
AF (FL, S) |
6 |
SL (DIR, L) |
2 |
SS (DIR, S) |
2 |
SH (FL, L) |
1 |
SF (FL, S) |
7 |
CH (FL, L) |
0 |
CF (FL, S) |
3 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |