>Contig-U13442-1 (Contig-U13442-1Q) /CSM_Contig/Contig-U13442-1Q.Seq.d
ATAATAATATCCTCTTTTTTTTTTTAAATAATAATAATTTTTTTTTTTTA
AATAATAATAATTTTTTCCAAATATTTTTTTTATACTCTTTTTGTCTTTT
TTTATTAAAAATAATAAATAATTTTTTTTTTTAAAAAATTTTTTCTTGTA
TAAAATAAATTTTCCTTTTCATTCTTTTAAATAGATAATATATAAATTAT
ATAATTATATATTAA

est1=SSC693F,1,195
est2=SSI501F,6,208
est3=SSK707F,37,216

NNILFFFLNNNNFFFLNNNNFFQIFFLYSFCLFLLKIINNFFF*kifscik*iflfilln
r*yinyiiiy*

Frame A:
iiissfff*iiiifff*iiiifskyffytlfvffy*k**iifffkkfflv*nkfsfsff*
idni*ii*lyi


Frame B:
**yplfffk***ffffk***ffpniffilflsffiknnk*ffflknfflykinfpfhsfk
*iiyklynyil


Frame C:
NNILFFFLNNNNFFFLNNNNFFQIFFLYSFCLFLLKIINNFFF*kifscik*iflfilln
r*yinyiiiy*

Query= Contig-U13442-1 (Contig-U13442-1Q)
/CSM_Contig/Contig-U13442-1Q.Seq.d
         (215 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13442-1 (Contig-U13442-1Q) /CSM_Contig/Conti...    28  3.5

>Contig-U13442-1 (Contig-U13442-1Q) /CSM_Contig/Contig-U13442-1Q.Seq.d
          Length = 215

 Score = 28.2 bits (14), Expect = 3.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                        
Query: 1  ataataatatcctc 14
          ||||||||||||||
Sbjct: 1  ataataatatcctc 14


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 127
Number of Sequences: 6905
Number of extensions: 127
Number of successful extensions: 15
Number of sequences better than 10.0: 1
length of query: 215
length of database: 5,674,871
effective HSP length: 15
effective length of query: 200
effective length of database: 5,571,296
effective search space: 1114259200
effective search space used: 1114259200
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)

Query= Contig-U13442-1 (Contig-U13442-1Q) /CSM_Contig/Contig-U13442-1Q.Seq.d
         (215 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 14,367,296
Number of extensions: 373578
Number of successful extensions: 57137
Number of sequences better than 10.0: 0
Length of query: 215
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 192
Effective length of database: 93,106,754,628
Effective search space: 17876496888576
Effective search space used: 17876496888576
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

Query= Contig-U13442-1 (Contig-U13442-1Q) /CSM_Contig/Contig-U13442-1Q.Seq.d
         (215 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 56,480,589
Number of extensions: 218736
Number of successful extensions: 31
Number of sequences better than 10.0: 0
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 0
Length of query: 71
Length of database: 1,051,180,864
Length adjustment: 42
Effective length of query: 29
Effective length of database: 915,245,386
Effective search space: 26542116194
Effective search space used: 26542116194
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)

 psg: 0.92  gvh: 0.39  alm: 0.27  top: 0.53  tms: 0.07  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 16.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U13442-1 is end