Contig-U02223-1
Contig ID Contig-U02223-1
Contig update 2001. 8.29
Contig sequence
>Contig-U02223-1 (Contig-U02223-1Q) /CSM_Contig/Contig-U02223-1Q.Seq.d
ACTTATTCTTAATAAAAAAATGAGTTCTATCTGTCCAACATGCACTAAAA
GAGTTTATGCAGCTGAAGCTGTTAAAGCATGTGAAAAACAATATCATAAA
TTATGTCTTCAATGTTTCCATTGTCATAATAATCCTTCAATTAGGTCAAT
ACTCTGAACGTGATGGTCAACCATATTGCAAAACTGATTATGATAGATTA
TTTAGACAAGCAGGTTACAGAGGTGGTGGTGTTGTTGCAGACAGTTTTGA
ACCAGCACCAAAAGTTGAAACTACAACTCCAGTCGAACCAACCCCACCTC
CAACTTTTTTAACACCAACTGAAGAAGTTAAAGTTCAATTATTCCCAACC
AATTGTCCAAAATGTGGTAAGAAAGCATACTTTAATGAACTTAAAGTTTA
TAACCTCTCGTGATTGGCATAAGACTTGTTTCGCTTGTTTCTCATGTAAT
AAAAACTTAGTAAGTGGTCAATACAGTGAAAAAGAAGGTTTAATTTATTG
TCCAAGATGTTATCAATCTAAATTTGGTCCAAGTGGTTACACCAATACTG
GTGCATTAGTTTTACATTAAAAAAAATAAAATCAAAAAAAAA--------
--GCNTTAGNTTTACNTTNAAAAAAATNAAANCNAAAAAAAAAAAAATAA
AATCAAAAAACAAGAATAAAATATGTGCTATAAAAAAATAATAATATTTA
TTTAAATAAATA

Gap gap included
Contig length 702
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 301233
End point 300586
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 5
Link to clone list U02223
List of clone(s)

est1=VSI429F,1,527
est2=SSM214E,8,587
est3=VSF724F,8,592
est4=SSC504E,30,583
est5=VSF724Z,594,704
Translated Amino Acid sequence
lflikk*vlsvqhalkefmqlkllkhvknniinyvfnvsiviiilqlgqyserdgqpyck
tdydrlfrqagyrgggvvadsfepapkvetttpveptppptfltpteevkvqlfptncpk
cgkkayfnelkvynls*la*dlfrlflm**klskwsiq*krrfnllskmlsi*IWSKWLH
QYWCISFTLKKIKSKK---

---XXFTXKKXKXKKKKIKSKNKNKICAIKK**ylfk*i


Translated Amino Acid sequence (All Frames)
Frame A:
tys**knefylsnmh*kslcs*sc*sm*ktis*imssmfpls**sfn*vntlnvmvnhia
klimidyldkqvtevvvllqtvlnqhqklklqlqsnqphlqlf*hqlkklkfnysqpivq
nvvrkhtlmnlkfitsrdwhktcfacfscnknlvsgqysekegliycprcyqskfgpsgy
tntgalvlh*kk*nqkk---

---alxlxxkkxxxkkkk*nqktrikyvl*knnniylnk

Frame B:
lilnkkmssicptctkrvyaaeavkacekqyhklclqcfhchnnpsirsil*t*wstilq
n*l**ii*tsrlqrwwcccrqf*tstks*nynssrtnptsnffntn*rs*ssiipnqlsk
mw*esil**t*sl*plvigirlvslvshvikt**vvntvkkkv*fivqdvinlnlvqvvt
pilvh*fyikknkikkk---

---x*xyxxknxxxkkknkikkqe*nmcykkiiifi*in

Frame C:
lflikk*vlsvqhalkefmqlkllkhvknniinyvfnvsiviiilqlgqyserdgqpyck
tdydrlfrqagyrgggvvadsfepapkvetttpveptppptfltpteevkvqlfptncpk
cgkkayfnelkvynls*la*dlfrlflm**klskwsiq*krrfnllskmlsi*IWSKWLH
QYWCISFTLKKIKSKK---

---XXFTXKKXKXKKKKIKSKNKNKICAIKK**ylfk*i

own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U02223-1 (Contig-U02223-1Q)
/CSM_Contig/Contig-U02223-1Q.Seq.d
(712 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U02223-1 (Contig-U02223-1Q) /CSM_Contig/Conti... 1086 0.0
Contig-U13443-1 (Contig-U13443-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U11540-1 (Contig-U11540-1Q) /CSM_Contig/Conti... 38 0.013
Contig-U10720-1 (Contig-U10720-1Q) /CSM_Contig/Conti... 38 0.013
Contig-U11601-1 (Contig-U11601-1Q) /CSM_Contig/Conti... 36 0.050
Contig-U11160-1 (Contig-U11160-1Q) /CSM_Contig/Conti... 36 0.050
Contig-U08816-1 (Contig-U08816-1Q) /CSM_Contig/Conti... 36 0.050
Contig-U14831-1 (Contig-U14831-1Q) /CSM_Contig/Conti... 34 0.20
Contig-U12393-1 (Contig-U12393-1Q) /CSM_Contig/Conti... 34 0.20
Contig-U12250-1 (Contig-U12250-1Q) /CSM_Contig/Conti... 34 0.20

>Contig-U02223-1 (Contig-U02223-1Q) /CSM_Contig/Contig-U02223-1Q.Seq.d
Length = 712

Score = 1086 bits (548), Expect = 0.0
Identities = 548/548 (100%)
Strand = Plus / Plus


Query: 21 tgagttctatctgtccaacatgcactaaaagagtttatgcagctgaagctgttaaagcat 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 tgagttctatctgtccaacatgcactaaaagagtttatgcagctgaagctgttaaagcat 80


Query: 81 gtgaaaaacaatatcataaattatgtcttcaatgtttccattgtcataataatccttcaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 gtgaaaaacaatatcataaattatgtcttcaatgtttccattgtcataataatccttcaa 140


Query: 141 ttaggtcaatactctgaacgtgatggtcaaccatattgcaaaactgattatgatagatta 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 ttaggtcaatactctgaacgtgatggtcaaccatattgcaaaactgattatgatagatta 200


Query: 201 tttagacaagcaggttacagaggtggtggtgttgttgcagacagttttgaaccagcacca 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagacaagcaggttacagaggtggtggtgttgttgcagacagttttgaaccagcacca 260


Query: 261 aaagttgaaactacaactccagtcgaaccaaccccacctccaacttttttaacaccaact 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagttgaaactacaactccagtcgaaccaaccccacctccaacttttttaacaccaact 320


Query: 321 gaagaagttaaagttcaattattcccaaccaattgtccaaaatgtggtaagaaagcatac 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagaagttaaagttcaattattcccaaccaattgtccaaaatgtggtaagaaagcatac 380


Query: 381 tttaatgaacttaaagtttataacctctcgtgattggcataagacttgtttcgcttgttt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaatgaacttaaagtttataacctctcgtgattggcataagacttgtttcgcttgttt 440


Query: 441 ctcatgtaataaaaacttagtaagtggtcaatacagtgaaaaagaaggtttaatttattg 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcatgtaataaaaacttagtaagtggtcaatacagtgaaaaagaaggtttaatttattg 500


Query: 501 tccaagatgttatcaatctaaatttggtccaagtggttacaccaatactggtgcattagt 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccaagatgttatcaatctaaatttggtccaagtggttacaccaatactggtgcattagt 560


Query: 561 tttacatt 568
||||||||
Sbjct: 561 tttacatt 568


>Contig-U13443-1 (Contig-U13443-1Q) /CSM_Contig/Contig-U13443-1Q.Seq.d
Length = 1411

Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 251 accagcaccaaaagttgaaa 270
||||||||||||||||||||
Sbjct: 573 accagcaccaaaagttgaaa 592


>Contig-U11540-1 (Contig-U11540-1Q) /CSM_Contig/Contig-U11540-1Q.Seq.d
Length = 1321

Score = 38.2 bits (19), Expect = 0.013
Identities = 22/23 (95%)
Strand = Plus / Minus


Query: 256 caccaaaagttgaaactacaact 278
|||||||| ||||||||||||||
Sbjct: 1177 caccaaaaattgaaactacaact 1155


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5644
Number of Sequences: 6905
Number of extensions: 5644
Number of successful extensions: 558
Number of sequences better than 10.0: 63
length of query: 712
length of database: 5,674,871
effective HSP length: 16
effective length of query: 696
effective length of database: 5,564,391
effective search space: 3872816136
effective search space used: 3872816136
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.16
Homology vs DNA
Query= Contig-U02223-1 (Contig-U02223-1Q) /CSM_Contig/Contig-U02223-1Q.Seq.d
(712 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU265683) Dictyostelium discoideum vegetative cDNA clone:VS... 852 0.0 2
(AU038967) Dictyostelium discoideum slug cDNA, clone SSM214. 543 0.0 3
(C84034) Dictyostelium discoideum slug cDNA, clone SSC504. 543 0.0 3
(AU268682) Dictyostelium discoideum vegetative cDNA clone:VS... 789 0.0 2
(AF348466) Dictyostelium discoideum LimC gene, complete cds. 434 0.0 7
(AU074835) Dictyostelium discoideum slug cDNA, clone SSM214. 434 e-117 1
(AC232106) Solanum tuberosum chromosome 1 clone RH156I19, **... 42 0.11 3
(DE049366) Oryzias latipes DNA, clone: ola1-016C14.F, genomi... 48 0.46 1
(CC953176) BOIET54TF BO_1.4_1.6_KB_nuc Brassica oleracea gen... 48 0.46 1
(BH924360) odi55c02.b1 B.oleracea002 Brassica oleracea genom... 48 0.46 1
(CP000776) Campylobacter hominis ATCC BAA-381, complete genome. 48 0.46 1
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN... 46 1.8 1
(AP004188) Oryza sativa Japonica Group genomic DNA, chromoso... 46 1.8 1
(AP004160) Oryza sativa Japonica Group genomic DNA, chromoso... 46 1.8 1
(EA696961) Sequence 75840 from patent US 7365185. 46 1.8 1
(CL757640) OR_BBa0126C09.f OR_BBa Oryza nivara genomic clone... 46 1.8 1
(CL631442) OR_BBa0042I19.f OR_BBa Oryza nivara genomic clone... 46 1.8 1
(FE172946) LV_NC_RA05N05r Litopenaeus vannamei nerve cord cD... 46 1.8 1
(AC180780) Strongylocentrotus purpuratus clone R3-3076F4, WO... 44 6.3 3
(CU182823) Zebrafish DNA sequence from clone CH211-134C10. 44 7.2 1
(BX936284) Zebrafish DNA sequence from clone DKEY-22A24 in l... 44 7.2 1
(AL831747) Zebrafish DNA sequence from clone CH211-258G4 in ... 44 7.2 1
(AL844572) Mouse DNA sequence from clone RP23-40C5 on chromo... 44 7.2 1
(Z11126) Caenorhabditis elegans Cosmid ZK643. 44 7.2 1
(AC145113) Homo sapiens chromosome 8 clone XXfos-87134C1 map... 44 7.2 1
(AC218132) Bos taurus clone CH240-237I17, WORKING DRAFT SEQU... 44 7.2 1
(AC218114) Bos taurus clone CH240-228P19, WORKING DRAFT SEQU... 44 7.2 1
(AC180464) Strongylocentrotus purpuratus clone R3-3102G21, W... 44 7.2 1
(AC180463) Strongylocentrotus purpuratus clone R3-3102F13, W... 44 7.2 1
(AC170372) Bos taurus clone CH240-228P19, *** SEQUENCING IN ... 44 7.2 1
(ER558519) 1093015731668 Global-Ocean-Sampling_GS-36-01-01-2... 44 7.2 1
(DU501449) 1098448317280 CHORI-243 Ovis aries genomic clone ... 44 7.2 1
(AG486163) Mus musculus molossinus DNA, clone:MSMg01-382D06.... 44 7.2 1
(CC547164) CH240_430D3.T7 CHORI-240 Bos taurus genomic clone... 44 7.2 1
(CV515871) 0048P0011Z_F02_SP6 Mimulus guttatus library 1 Mim... 44 7.2 1
(CV515778) 0048P0011Z_F02_T7 Mimulus guttatus library 1 Mimu... 44 7.2 1
(CV515496) 0048P0009Z_D07_SP6 Mimulus guttatus library 1 Mim... 44 7.2 1
(CV515407) 0048P0009Z_D07_T7 Mimulus guttatus library 1 Mimu... 44 7.2 1
(BJ104737) Caenorhabditis elegans cDNA clone:yk1065b06 : 5' ... 44 7.2 1
(FM247979) Caenorhabditis elegans EST, clone G05_ce3.trans.... 44 7.2 1
(FM247841) Caenorhabditis elegans EST, clone G05_ce3.trans.... 44 7.2 1

>(AU265683) Dictyostelium discoideum vegetative cDNA clone:VSF724,
5' end single read.
Length = 585

Score = 852 bits (430), Expect(2) = 0.0
Identities = 436/438 (99%)
Strand = Plus / Plus


Query: 131 aatccttcaattaggtcaatactctgaacgtgatggtcaaccatattgcaaaactgatta 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 aatccttcaattaggtcaatactctgaacgtgatggtcaaccatattgcaaaactgatta 182


Query: 191 tgatagattatttagacaagcaggttacagaggtggtggtgttgttgcagacagttttga 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tgatagattatttagacaagcaggttacagaggtggtggtgttgttgcagacagttttga 242


Query: 251 accagcaccaaaagttgaaactacaactccagtcgaaccaaccccacctccaactttttt 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 accagcaccaaaagttgaaactacaactccagtcgaaccaaccccacctccaactttttt 302


Query: 311 aacaccaactgaagaagttaaagttcaattattcccaaccaattgtccaaaatgtggtaa 370
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 303 aacaccaactgaagaagttaaagttcaattattcccaaccaattgtccggaatgtggtaa 362


Query: 371 gaaagcatactttaatgaacttaaagtttataacctctcgtgattggcataagacttgtt 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gaaagcatactttaatgaacttaaagtttataacctctcgtgattggcataagacttgtt 422


Query: 431 tcgcttgtttctcatgtaataaaaacttagtaagtggtcaatacagtgaaaaagaaggtt 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tcgcttgtttctcatgtaataaaaacttagtaagtggtcaatacagtgaaaaagaaggtt 482


Query: 491 taatttattgtccaagatgttatcaatctaaatttggtccaagtggttacaccaatactg 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 taatttattgtccaagatgttatcaatctaaatttggtccaagtggttacaccaatactg 542


Query: 551 gtgcattagttttacatt 568
||||||||||||||||||
Sbjct: 543 gtgcattagttttacatt 560

Score = 216 bits (109), Expect(2) = 0.0
Identities = 109/109 (100%)
Strand = Plus / Plus


Query: 21 tgagttctatctgtccaacatgcactaaaagagtttatgcagctgaagctgttaaagcat 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 tgagttctatctgtccaacatgcactaaaagagtttatgcagctgaagctgttaaagcat 73


Query: 81 gtgaaaaacaatatcataaattatgtcttcaatgtttccattgtcataa 129
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 gtgaaaaacaatatcataaattatgtcttcaatgtttccattgtcataa 122

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 675,633,251
Number of extensions: 37724087
Number of successful extensions: 2882870
Number of sequences better than 10.0: 41
Length of query: 712
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 688
Effective length of database: 99,340,224,878
Effective search space: 68346074716064
Effective search space used: 68346074716064
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.19
Homology vs Protein
Query= Contig-U02223-1 (Contig-U02223-1Q) /CSM_Contig/Contig-U02223-1Q.Seq.d
(712 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q9BIW5) RecName: Full=LIM domain-containing protein C; &AF3484... 130 4e-48
BC083298_1(BC083298|pid:none) Danio rerio zgc:101840, mRNA (cDNA... 52 1e-15
(Q9DCT8) RecName: Full=Cysteine-rich protein 2; Short=C... 52 1e-14
(P36201) RecName: Full=Cysteine-rich protein 2; Short=C... 52 1e-14
EU247119_1(EU247119|pid:none) Lycosa singoriensis cysteine and g... 62 2e-09
BT081168_1(BT081168|pid:none) Caligus clemensi clone ccle-evs-51... 58 1e-08
T16110(T16110)hypothetical protein F20D12.5 - Caenorhabditis ele... 58 2e-08
U40933_3(U40933|pid:none) Caenorhabditis elegans cosmid F20D12, ... 58 2e-08
CR760512_1(CR760512|pid:none) Xenopus tropicalis finished cDNA, ... 61 4e-08
T29254(T29254) hypothetical protein B0496.7 - Caenorhabditis ele... 57 4e-08
DQ215372_1(DQ215372|pid:none) Taeniopygia guttata clone 0058P001... 60 5e-08
(P50460) RecName: Full=Cysteine and glycine-rich protein 2; ... 60 5e-08
(Q62908) RecName: Full=Cysteine and glycine-rich protein 2; ... 60 5e-08
DQ215368_1(DQ215368|pid:none) Taeniopygia guttata clone 0063P002... 60 5e-08
AK003328_1(AK003328|pid:none) Mus musculus 18-day embryo whole b... 60 5e-08
(P97314) RecName: Full=Cysteine and glycine-rich protein 2; ... 60 5e-08
DQ215370_1(DQ215370|pid:none) Taeniopygia guttata clone 0058P002... 60 5e-08
AK012647_1(AK012647|pid:none) Mus musculus 10, 11 days embryo wh... 60 5e-08
BC081064_1(BC081064|pid:none) Xenopus laevis MGC81964 protein, m... 60 5e-08
(Q05158) RecName: Full=Cysteine and glycine-rich protein 2; ... 60 5e-08
(Q16527) RecName: Full=Cysteine and glycine-rich protein 2; ... 60 5e-08
(P63254) RecName: Full=Cysteine-rich protein 1; AltName: Full=Cy... 56 7e-08
AK088267_1(AK088267|pid:none) Mus musculus 2 days neonate thymus... 56 7e-08
(Q56K04) RecName: Full=Cysteine-rich protein 1; &AY911323_1(AY9... 55 7e-08
BT046510_1(BT046510|pid:none) Salmo salar clone ssal-eve-578-236... 60 7e-08
BC064074_1(BC064074|pid:none) Mus musculus cysteine-rich protein... 55 9e-08
BT058365_1(BT058365|pid:none) Salmo salar clone Contig4490 Cyste... 55 9e-08
JC2431(JC2431) cysteine-rich protein 1 - human &U09770_1(U09770... 55 9e-08
BT048524_1(BT048524|pid:none) Salmo salar clone ssal-eve-547-255... 60 9e-08
Y17313_1(Y17313|pid:none) Oncorhynchus mykiss mRNA forcystein-ri... 60 9e-08
BT075050_1(BT075050|pid:none) Osmerus mordax clone omor-rgc-518-... 57 1e-07
DQ445509_1(DQ445509|pid:none) Graphocephala atropunctata isolate... 55 1e-07
AK300092_1(AK300092|pid:none) Homo sapiens cDNA FLJ56946 complet... 51 1e-07
AY891159_1(AY891159|pid:none) Synthetic construct Homo sapiens c... 51 1e-07
(P52943) RecName: Full=Cysteine-rich protein 2; Short=C... 51 1e-07
AF121260_1(AF121260|pid:none) Homo sapiens myogenic factor LIM3 ... 57 1e-07
(P50461) RecName: Full=Cysteine and glycine-rich protein 3; ... 57 1e-07
(P50463) RecName: Full=Cysteine and glycine-rich protein 3; ... 57 1e-07
PDBN(1B8T)A MOL_ID: 1;MOL_ID: 1; MOLECULE: CRP1; MOLECULE: CRP1;... 59 1e-07
AY461436_1(AY461436|pid:none) Bombyx mori Lim protein mRNA, comp... 54 1e-07
AK302237_1(AK302237|pid:none) Homo sapiens cDNA FLJ61189 complet... 59 1e-07
BC090913_1(BC090913|pid:none) Danio rerio zgc:103738, mRNA (cDNA... 55 2e-07
(P97315) RecName: Full=Cysteine and glycine-rich protein 1; ... 59 2e-07
(P47875) RecName: Full=Cysteine and glycine-rich protein 1; ... 59 2e-07
AY156993_1(AY156993|pid:none) Hirudo medicinalis cysteine-rich i... 53 2e-07
(Q5RCT4) RecName: Full=Cysteine and glycine-rich protein 1; ... 58 3e-07
AK131508_1(AK131508|pid:none) Homo sapiens cDNA FLJ16726 fis, cl... 58 3e-07
AK290133_1(AK290133|pid:none) Homo sapiens cDNA FLJ77815 complet... 58 3e-07
(P21291) RecName: Full=Cysteine and glycine-rich protein 1; ... 58 3e-07
AY890824_1(AY890824|pid:none) Synthetic construct Homo sapiens c... 58 3e-07
AF272888_1(AF272888|pid:none) Xenopus laevis LIM protein mRNA, c... 58 3e-07
BT082231_1(BT082231|pid:none) Anoplopoma fimbria clone afim-evh-... 56 3e-07
BT046266_1(BT046266|pid:none) Salmo salar clone ssal-evd-562-178... 54 4e-07
AY829796_1(AY829796|pid:none) Lonomia obliqua LIM protein 1 mRNA... 53 4e-07
BT079168_1(BT079168|pid:none) Esox lucius clone eluc-evq-509-105... 52 4e-07
(Q0VFX8) RecName: Full=Cysteine-rich protein 2; &BC118323_1(BC1... 51 5e-07
BT056884_1(BT056884|pid:none) Salmo salar clone ssal-rgb2-651-15... 57 6e-07
BC129417_1(BC129417|pid:none) Danio rerio zgc:158737, mRNA (cDNA... 57 6e-07
BC076911_1(BC076911|pid:none) Xenopus tropicalis cysteine and gl... 57 6e-07
DQ400409_1(DQ400409|pid:none) Oncorhynchus mykiss cysteine- and ... 57 6e-07
BT046707_1(BT046707|pid:none) Salmo salar clone ssal-evd-508-234... 57 6e-07
BT082241_1(BT082241|pid:none) Anoplopoma fimbria clone afim-evh-... 53 6e-07
BC078530_1(BC078530|pid:none) Xenopus laevis MGC85360 protein, m... 53 7e-07
BT078787_1(BT078787|pid:none) Esox lucius clone eluc-evq-530-347... 52 7e-07
BT049834_1(BT049834|pid:none) Salmo salar clone ssal-evd-530-178... 57 7e-07
BC083395_1(BC083395|pid:none) Danio rerio cysteine and glycine-r... 57 7e-07
BC078491_1(BC078491|pid:none) Xenopus laevis MGC85263 protein, m... 52 9e-07
BX936423_2(BX936423|pid:none) Zebrafish DNA sequence from clone ... 52 9e-07
BC159242_1(BC159242|pid:none) Danio rerio cysteine-rich protein ... 52 1e-06
BC044391_1(BC044391|pid:none) Danio rerio cysteine-rich protein ... 52 1e-06
S29392(S29392)estradiol-stimulated protein ESP1 - rat 50 1e-06
EF084222_1(EF084222|pid:none) Picea sitchensis clone WS02712_A01... 51 1e-06
AY815967_1(AY815967|pid:none) Schistosoma japonicum SJCHGC02224 ... 53 1e-06
BT049624_1(BT049624|pid:none) Salmo salar clone ssal-eve-524-233... 55 3e-06
BC077045_1(BC077045|pid:none) Xenopus tropicalis cysteine and gl... 54 4e-06
BT081075_1(BT081075|pid:none) Caligus clemensi clone ccle-evs-50... 50 4e-06
FN357690_8(FN357690|pid:none) Schistosoma mansoni genome sequenc... 52 4e-06
BC065956_1(BC065956|pid:none) Danio rerio cysteine and glycine-r... 54 5e-06
BC081239_1(BC081239|pid:none) Xenopus laevis MGC85577 protein, m... 54 5e-06
BC090092_1(BC090092|pid:none) Xenopus tropicalis MGC97606 protei... 50 7e-06
AY703482_1(AY703482|pid:none) Apriona germari muscle LIM protein... 49 7e-06
BT025136_1(BT025136|pid:none) Drosophila melanogaster IP07084 fu... 50 1e-05
AY915415_1(AY915415|pid:none) Schistosoma japonicum SJCHGC06247 ... 50 1e-05
U80955_3(U80955|pid:none) Caenorhabditis elegans cosmid T04C9, c... 49 1e-05
BC156027_1(BC156027|pid:none) Xenopus tropicalis hypothetical pr... 52 2e-05
AB463553_1(AB463553|pid:none) Synthetic construct DNA, clone: pF... 48 2e-05
AY555741_1(AY555741|pid:none) Homo sapiens LIM-only isoform A mR... 45 2e-05
EU186001_1(EU186001|pid:none) Lilium longiflorum LIM1 mRNA, comp... 41 2e-05
AK317129_1(AK317129|pid:none) Arabidopsis thaliana AT3G55770 mRN... 42 2e-05
EF035040_1(EF035040|pid:none) Populus tremula x Populus alba LIM... 42 2e-05
T50694(T50694) transcription factor L2 [imported] - Arabidopsis ... 42 2e-05
AK319026_1(AK319026|pid:none) Arabidopsis thaliana AT3G55770 mRN... 42 3e-05
BT062488_1(BT062488|pid:none) Zea mays full-length cDNA clone ZM... 39 3e-05
AB097518_1(AB097518|pid:none) Macaca fascicularis brain cDNA clo... 41 4e-05
EF119718_1(EF119718|pid:none) Homo sapiens xeplin variant 2 (CMY... 42 5e-05
AK122889_1(AK122889|pid:none) Homo sapiens cDNA FLJ16539 fis, cl... 42 5e-05
CP001576_458(CP001576|pid:none) Micromonas sp. RCC299 chromosome... 46 5e-05
EF148212_1(EF148212|pid:none) Populus trichocarpa clone WS0128_M... 45 5e-05
EF146377_1(EF146377|pid:none) Populus trichocarpa clone WS0117_L... 42 7e-05
BT061506_1(BT061506|pid:none) Zea mays full-length cDNA clone ZM... 39 9e-05
BC086356_1(BC086356|pid:none) Rattus norvegicus cysteine and gly... 50 9e-05
AB443439_1(AB443439|pid:none) Gryllus bimaculatus Rassf mRNA for... 45 9e-05
AC009273_19(AC009273|pid:none) Sequence of BAC T1N6 from Arabido... 41 1e-04
AK317367_1(AK317367|pid:none) Arabidopsis thaliana AT1G01780 mRN... 41 1e-04
BT068434_1(BT068434|pid:none) Zea mays full-length cDNA clone ZM... 38 1e-04
AC135208_4(AC135208|pid:none) Oryza sativa (japonica cultivar-gr... 39 1e-04
FJ907927_1(FJ907927|pid:none) Drosophila silvestris clone sv3E-A... 48 1e-04
CR933519_5(CR933519|pid:none) Zebrafish DNA sequence from clone ... 44 1e-04
FN357451_41(FN357451|pid:none) Schistosoma mansoni genome sequen... 40 1e-04
AB079511_1(AB079511|pid:none) Populus kitakamiensis Pklim1 gene ... 40 1e-04
EF035038_1(EF035038|pid:none) Populus tremula x Populus alba LIM... 39 1e-04
AB079513_1(AB079513|pid:none) Nicotiana tabacum Ntlim1 mRNA for ... 40 1e-04
AK342987_1(AK342987|pid:none) Acyrthosiphon pisum ACYPI006302 mR... 46 1e-04
AY113460_1(AY113460|pid:none) Drosophila melanogaster RE37250 fu... 49 2e-04
AE014296_2988(AE014296|pid:none) Drosophila melanogaster chromos... 49 2e-04
AE014296_2989(AE014296|pid:none) Drosophila melanogaster chromos... 49 2e-04
AE014296_2981(AE014296|pid:none) Drosophila melanogaster chromos... 49 2e-04
AF002109_4(AF002109|pid:none) Arabidopsis thaliana chromosome 2 ... 41 2e-04
AB023479_1(AB023479|pid:none) Nicotiana tabacum mRNA for transcr... 39 2e-04
AM475696_4(AM475696|pid:none) Vitis vinifera contig VV78X042996.... 39 2e-04
EF145390_1(EF145390|pid:none) Populus trichocarpa clone WS01124_... 39 2e-04
EF035039_1(EF035039|pid:none) Populus tremula x Populus alba LIM... 39 2e-04
EF035036_1(EF035036|pid:none) Populus tremula x Populus alba str... 40 2e-04
AX885748_1(AX885748|pid:none) Sequence 1611 from Patent EP1033401. 49 2e-04
AB209756_1(AB209756|pid:none) Homo sapiens mRNA for cysteine and... 49 2e-04
EU957376_1(EU957376|pid:none) Zea mays clone 1590177 pollen-spec... 38 2e-04
AF184109_1(AF184109|pid:none) Nicotiana tabacum LIM domain prote... 40 2e-04
FN357384_18(FN357384|pid:none) Schistosoma mansoni genome sequen... 48 3e-04
BT078286_1(BT078286|pid:none) Lepeophtheirus salmonis Pacific fo... 48 3e-04
(P29675) RecName: Full=Pollen-specific protein SF3; &AF187104_1... 39 3e-04
AF187103_1(AF187103|pid:none) Helianthus annuus LIM domain prote... 39 3e-04
AM469183_1(AM469183|pid:none) Vitis vinifera contig VV78X221882.... 44 3e-04
FN317368_1(FN317368|pid:none) Schistosoma japonicum isolate Anhu... 48 3e-04
FN357546_6(FN357546|pid:none) Schistosoma mansoni genome sequenc... 48 3e-04
BC172832_1(BC172832|pid:none) Synthetic construct Mus musculus c... 40 4e-04
AE014297_3403(AE014297|pid:none) Drosophila melanogaster chromos... 43 4e-04
AC160095_6(AC160095|pid:none) Solanum lycopersicum clone BB, com... 39 4e-04
DQ213126_1(DQ213126|pid:none) Taeniopygia guttata clone 0058P002... 39 5e-04
AC123899_21(AC123899|pid:none) Medicago truncatula clone mth2-33... 40 5e-04
BT053270_1(BT053270|pid:none) Medicago truncatula clone MTYFP_FQ... 38 5e-04
EU675626_1(EU675626|pid:none) Hirudo medicinalis paxillin mRNA, ... 47 6e-04
DQ178131_1(DQ178131|pid:none) Protaetia brevitarsis Lim protein ... 45 6e-04
AF184886_1(AF184886|pid:none) Nicotiana tabacum LIM domain prote... 40 7e-04
AF443117_1(AF443117|pid:none) Gossypium hirsutum LIM domain prot... 37 7e-04
EF082885_1(EF082885|pid:none) Picea sitchensis clone WS02728_E15... 39 7e-04
EU482903_1(EU482903|pid:none) Pinus taeda LIM2 transcription fac... 40 8e-04
BT039056_1(BT039056|pid:none) Zea mays full-length cDNA clone ZM... 38 9e-04
AF049917_1(AF049917|pid:none) Petunia x hybrida PGPS/D1 (PGPS/D1... 39 9e-04
EU962065_1(EU962065|pid:none) Zea mays clone 239982 pollen-speci... 37 9e-04
BT055434_1(BT055434|pid:none) Zea mays full-length cDNA clone ZM... 37 9e-04
AF197568_1(AF197568|pid:none) Nicotiana tabacum pollen specific ... 39 9e-04
EU966603_1(EU966603|pid:none) Zea mays clone 295565 unknown mRNA. 38 0.001
(Q4KM31) RecName: Full=LIM domain-containing protein 2; &BC0988... 37 0.001
DQ225183_1(DQ225183|pid:none) Sparus aurata four and a half LIM ... 46 0.001
AE014297_1029(AE014297|pid:none) Drosophila melanogaster chromos... 46 0.001
BC160411_1(BC160411|pid:none) Xenopus tropicalis hypothetical pr... 46 0.001
AE014297_1030(AE014297|pid:none) Drosophila melanogaster chromos... 46 0.001
BT082154_1(BT082154|pid:none) Anoplopoma fimbria clone afim-evh-... 46 0.001
AE014297_1031(AE014297|pid:none) Drosophila melanogaster chromos... 46 0.001
BT036854_1(BT036854|pid:none) Zea mays full-length cDNA clone ZM... 38 0.001
AJ721104_1(AJ721104|pid:none) Gallus gallus mRNA for hypothetica... 37 0.001
(Q9BT23) RecName: Full=LIM domain-containing protein 2; &AK0923... 37 0.001
AL583834_6(AL583834|pid:none) Human DNA sequence from clone RP11... 46 0.001
DQ118096_1(DQ118096|pid:none) Danio rerio four and half LIM doma... 46 0.001
AB493659_1(AB493659|pid:none) Arabidopsis thaliana At3g61230 mRN... 46 0.001
AL137898_13(AL137898|pid:none) Arabidopsis thaliana DNA chromoso... 46 0.001
AB451269_1(AB451269|pid:none) Homo sapiens LIMK2 mRNA for LIM do... 46 0.001
(P53671) RecName: Full=LIM domain kinase 2; Short=LIMK-... 46 0.001
EF035037_1(EF035037|pid:none) Populus tremula x Populus alba LIM... 41 0.001
EF035035_1(EF035035|pid:none) Populus tremula x Populus alba str... 37 0.001
EF147317_1(EF147317|pid:none) Populus trichocarpa clone WS0122_J... 37 0.001
U62293_1(U62293|pid:none) Human LIM-kinase1 and alternatively sp... 45 0.002
BC083393_1(BC083393|pid:none) Danio rerio zgc:103466, mRNA (cDNA... 45 0.002
(P53669) RecName: Full=LIM domain kinase 1; Short=LIMK-... 45 0.002
AK290162_1(AK290162|pid:none) Homo sapiens cDNA FLJ75611 complet... 45 0.002
AF134379_1(AF134379|pid:none) Homo sapiens LIM domain kinase 1 s... 45 0.002
U62293_2(U62293|pid:none) Human LIM-kinase1 and alternatively sp... 45 0.002
(P53667) RecName: Full=LIM domain kinase 1; Short=LIMK-... 45 0.002
CR936426_1(CR936426|pid:none) Zebrafish DNA sequence from clone ... 45 0.002
DQ118097_1(DQ118097|pid:none) Danio rerio four and half LIM doma... 45 0.002
CR858667_1(CR858667|pid:none) Pongo abelii mRNA; cDNA DKFZp459P0... 45 0.002
AF187105_1(AF187105|pid:none) Helianthus annuus LIM domain prote... 39 0.002
AF116849_1(AF116849|pid:none) Helianthus annuus. 39 0.002
(Q8BGB5) RecName: Full=LIM domain-containing protein 2; &AK0125... 37 0.002
BC067214_1(BC067214|pid:none) Homo sapiens actin binding LIM pro... 45 0.002
DQ413176_1(DQ413176|pid:none) Homo sapiens actin-binding LIM pro... 45 0.002
BC163263_1(BC163263|pid:none) Danio rerio LIM domain kinase 1, m... 45 0.002
U14166_1(U14166|pid:none) Mus musculus Kiz-1 mRNA, complete cds. 45 0.002
AY813079_1(AY813079|pid:none) Schistosoma japonicum SJCHGC07563 ... 45 0.002
AB058711_1(AB058711|pid:none) Homo sapiens mRNA for KIAA1808 pro... 45 0.002
BC122567_1(BC122567|pid:none) Homo sapiens actin binding LIM pro... 45 0.002
DQ413175_1(DQ413175|pid:none) Mus musculus actin-binding LIM pro... 45 0.002
DQ413177_1(DQ413177|pid:none) Homo sapiens actin-binding LIM pro... 45 0.002
AK154494_1(AK154494|pid:none) Mus musculus NOD-derived CD11c +ve... 45 0.002
U15159_1(U15159|pid:none) Mus musculus limk kinase (limk) mRNA, ... 45 0.002
AK082707_1(AK082707|pid:none) Mus musculus 0 day neonate cerebel... 45 0.002
AJ748603_1(AJ748603|pid:none) Mus musculus mRNA for actin bindin... 45 0.002
AY810688_1(AY810688|pid:none) Schistosoma japonicum SJCHGC02485 ... 40 0.002
EU496813_1(EU496813|pid:none) Nicotiana tabacum LIM domain prote... 40 0.002
AC125482_26(AC125482|pid:none) Medicago truncatula clone mth2-15... 37 0.002
AF005654_1(AF005654|pid:none) Homo sapiens actin-binding double-... 45 0.003
AK093471_1(AK093471|pid:none) Homo sapiens cDNA FLJ36152 fis, cl... 45 0.003
CR858106_1(CR858106|pid:none) Pongo abelii mRNA; cDNA DKFZp468F1... 45 0.003
AB462929_1(AB462929|pid:none) Synthetic construct DNA, clone: pF... 45 0.003
AL133384_4(AL133384|pid:none) Human DNA sequence from clone RP11... 45 0.003
D31883_1(D31883|pid:none) Homo sapiens KIAA0059 mRNA, partial cds. 45 0.003
AL133384_7(AL133384|pid:none) Human DNA sequence from clone RP11... 45 0.003
BC160566_1(BC160566|pid:none) Xenopus tropicalis four and a half... 45 0.003
AK122891_1(AK122891|pid:none) Homo sapiens cDNA FLJ16546 fis, cl... 45 0.003
AL133384_8(AL133384|pid:none) Human DNA sequence from clone RP11... 45 0.003
AC004665_22(AC004665|pid:none) Arabidopsis thaliana chromosome 2... 44 0.003
AE013599_3992(AE013599|pid:none) Drosophila melanogaster chromos... 44 0.004
BC072725_1(BC072725|pid:none) Danio rerio four and a half LIM do... 44 0.004
CP001328_545(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 44 0.004
AF316038_1(AF316038|pid:none) Mus musculus actin-binding double ... 44 0.004
EU436753_1(EU436753|pid:none) Schistosoma mansoni LIMPETin mRNA,... 44 0.004
AK122196_1(AK122196|pid:none) Mus musculus mRNA for mKIAA0059 pr... 44 0.004
BT046142_1(BT046142|pid:none) Drosophila melanogaster FI08059 fu... 44 0.004
AY815014_1(AY815014|pid:none) Schistosoma japonicum SJCHGC06016 ... 44 0.004
BT011157_1(BT011157|pid:none) Drosophila melanogaster AT24473 fu... 44 0.004
AK171860_1(AK171860|pid:none) Mus musculus activated spleen cDNA... 44 0.004
AF116851_1(AF116851|pid:none) Nicotiana tabacum LIM domain prote... 44 0.004
DQ143898_1(DQ143898|pid:none) Mus musculus transforming growth f... 44 0.005
DQ143893_1(DQ143893|pid:none) Mus musculus transforming growth f... 44 0.005
BC079524_1(BC079524|pid:none) Danio rerio zgc:92375, mRNA (cDNA ... 44 0.005
BC155652_1(BC155652|pid:none) Danio rerio zgc:172321, mRNA (cDNA... 44 0.005
DQ143900_1(DQ143900|pid:none) Mus musculus transforming growth f... 44 0.005
DQ143891_1(DQ143891|pid:none) Mus musculus transforming growth f... 44 0.005
AB122059_1(AB122059|pid:none) Anguilla japonica eFHL5 mRNA for f... 44 0.005
(Q6INU3) RecName: Full=PDZ and LIM domain protein 7; &BC072179_... 44 0.005
BX957309_6(BX957309|pid:none) Zebrafish DNA sequence from clone ... 44 0.005
AJ703893_1(AJ703893|pid:none) Rattus norvegicus mRNA for actin b... 44 0.005
(Q3YBZ6) RecName: Full=Transforming growth factor beta-1-induced... 44 0.005
BC082407_1(BC082407|pid:none) Xenopus laevis MGC82038 protein, m... 44 0.005
(Q7ZXE9) RecName: Full=Testin; AltName: Full=Xtes; &BC045027_1(... 44 0.006
AF134772_1(AF134772|pid:none) Mus musculus LIM protein (Fhl3) mR... 44 0.006
CR457425_1(CR457425|pid:none) Homo sapiens full open reading fra... 44 0.006
AL606907_5(AL606907|pid:none) Mouse DNA sequence from clone RP23... 44 0.006
AB174411_1(AB174411|pid:none) Macaca fascicularis brain cDNA clo... 44 0.006
AY891386_1(AY891386|pid:none) Synthetic construct Homo sapiens c... 44 0.006
(O54785) RecName: Full=LIM domain kinase 2; Short=LIMK-... 44 0.006
JC5813(JC5813)LIM motif-containing protein kinase (EC 2.7.1.-) 2... 44 0.006
(Q13643) RecName: Full=Four and a half LIM domains protein 3; ... 44 0.006
(Q3ZBI6) RecName: Full=Four and a half LIM domains protein 3; ... 44 0.006
AL606907_6(AL606907|pid:none) Mouse DNA sequence from clone RP23... 44 0.006
AB005140_1(AB005140|pid:none) Mus musculus limk2 gene for LIMK2,... 44 0.006
(Q99PD6) RecName: Full=Transforming growth factor beta-1-induced... 44 0.006
FN317463_1(FN317463|pid:none) Schistosoma japonicum isolate Anhu... 44 0.006
AB489164_1(AB489164|pid:none) Synthetic construct DNA, clone: pF... 36 0.006
DQ364062_1(DQ364062|pid:none) Sus scrofa EPLIN-b mRNA, complete ... 36 0.006
AK049350_1(AK049350|pid:none) Mus musculus ES cells cDNA, RIKEN ... 36 0.006
AF307845_1(AF307845|pid:none) Mus musculus epithelial protein lo... 36 0.006
BC031490_1(BC031490|pid:none) Mus musculus LIM domain and actin ... 36 0.006
(Q9ERG0) RecName: Full=LIM domain and actin-binding protein 1; A... 36 0.006
AK000372_1(AK000372|pid:none) Homo sapiens cDNA FLJ20365 fis, cl... 36 0.006
BC001247_1(BC001247|pid:none) Homo sapiens LIM domain and actin ... 36 0.006
AF198455_1(AF198455|pid:none) Homo sapiens epithelial protein lo... 36 0.006
DQ364063_1(DQ364063|pid:none) Sus scrofa EPLIN-a mRNA, complete ... 36 0.006
AK031698_1(AK031698|pid:none) Mus musculus 13 days embryo male t... 36 0.006
AK085065_1(AK085065|pid:none) Mus musculus 13 days embryo lung c... 35 0.006
AK096172_1(AK096172|pid:none) Homo sapiens cDNA FLJ38853 fis, cl... 36 0.007
AE017346_447(AE017346|pid:none) Cryptococcus neoformans var. neo... 43 0.008
BC091932_1(BC091932|pid:none) Danio rerio zgc:112954, mRNA (cDNA... 43 0.008
AY892297_1(AY892297|pid:none) Synthetic construct Homo sapiens c... 43 0.008
AB007836_1(AB007836|pid:none) Homo sapiens mRNA for Hic-5, parti... 43 0.008
AK173040_1(AK173040|pid:none) Mus musculus mRNA for mKIAA0843 pr... 43 0.008
AM392844_1(AM392844|pid:none) Synthetic construct Mus musculus c... 43 0.008
AY277587_1(AY277587|pid:none) Sus scrofa four and a half LIM dom... 43 0.008
AY377857_1(AY377857|pid:none) Sus scrofa four and a half LIM dom... 43 0.008
AY190946_4(AY190946|pid:none) Drosophila pseudoobscura clone DPS... 43 0.008
AK313327_1(AK313327|pid:none) Homo sapiens cDNA, FLJ93847, Homo ... 43 0.008
(O43294) RecName: Full=Transforming growth factor beta-1-induced... 43 0.008
BC142519_1(BC142519|pid:none) Bos taurus actin binding LIM prote... 43 0.008
AF116343_1(AF116343|pid:none) Homo sapiens androgen receptor coa... 43 0.008
BT076027_1(BT076027|pid:none) Caligus rogercresseyi clone crog-e... 43 0.011
BC104510_1(BC104510|pid:none) Bos taurus transforming growth fac... 43 0.011
(Q3MHZ4) RecName: Full=Transforming growth factor beta-1-induced... 43 0.011
Z81068_16(Z81068|pid:none) Caenorhabditis elegans Cosmid F25H5, ... 43 0.011
(Q9Z1Z9) RecName: Full=PDZ and LIM domain protein 7; AltName: Fu... 43 0.011
BC159222_1(BC159222|pid:none) Danio rerio four and a half LIM do... 43 0.011
Z81068_15(Z81068|pid:none) Caenorhabditis elegans Cosmid F25H5, ... 43 0.011
BC096905_1(BC096905|pid:none) Danio rerio similar to Epithelial ... 43 0.011
(Q9NR12) RecName: Full=PDZ and LIM domain protein 7; AltName: Fu... 42 0.014
AE014296_2990(AE014296|pid:none) Drosophila melanogaster chromos... 42 0.014
A55050(A55050) enigma - human &L35240_1(L35240|pid:none) 42 0.014
AF345905_1(AF345905|pid:none) Homo sapiens LIM mineralization pr... 42 0.014
FN357691_3(FN357691|pid:none) Schistosoma mansoni genome sequenc... 42 0.014
AM393284_1(AM393284|pid:none) Synthetic construct Homo sapiens c... 42 0.019
T09504(T09504;PD0036) LIM-protein FHL3, skeletal muscle - human ... 42 0.019
DQ413174_1(DQ413174|pid:none) Homo sapiens actin-binding LIM pro... 42 0.019
DQ266432_1(DQ266432|pid:none) Homo sapiens FHL2 isoform 5 mRNA, ... 42 0.019
AY892743_1(AY892743|pid:none) Synthetic construct Homo sapiens c... 42 0.019
AM393524_1(AM393524|pid:none) Synthetic construct Homo sapiens c... 42 0.019
AM392595_1(AM392595|pid:none) Synthetic construct Homo sapiens c... 42 0.019
AM393563_1(AM393563|pid:none) Synthetic construct Homo sapiens c... 42 0.019
(O94929) RecName: Full=Actin-binding LIM protein 3; AltName: Ful... 42 0.019
AM392963_1(AM392963|pid:none) Synthetic construct Homo sapiens c... 42 0.019
CR860826_1(CR860826|pid:none) Pongo abelii mRNA; cDNA DKFZp469A2... 42 0.019
AM393655_1(AM393655|pid:none) Synthetic construct Homo sapiens c... 42 0.019
(P53666) RecName: Full=LIM domain kinase 2; Short=LIMK-... 42 0.019
AM393559_1(AM393559|pid:none) Synthetic construct Homo sapiens c... 42 0.019
AM393554_1(AM393554|pid:none) Synthetic construct Homo sapiens c... 42 0.019
DQ307067_1(DQ307067|pid:none) Homo sapiens bone marrow four and ... 42 0.019
AM393116_1(AM393116|pid:none) Synthetic construct Homo sapiens c... 42 0.019
AM393820_1(AM393820|pid:none) Synthetic construct Homo sapiens c... 42 0.019
AM393099_1(AM393099|pid:none) Synthetic construct Homo sapiens c... 42 0.019
AM392930_1(AM392930|pid:none) Synthetic construct Homo sapiens c... 42 0.019
AM393401_1(AM393401|pid:none) Synthetic construct Homo sapiens c... 42 0.019
AM392998_1(AM392998|pid:none) Synthetic construct Homo sapiens c... 42 0.019
AY810685_1(AY810685|pid:none) Schistosoma japonicum SJCHGC02486 ... 38 0.020
EU976500_1(EU976500|pid:none) Zea mays clone 896310 unknown mRNA. 38 0.022
AF118146_1(AF118146|pid:none) Oryctolagus cuniculus leupaxin mRN... 42 0.024
BT056943_1(BT056943|pid:none) Salmo salar clone ssal-rgb2-609-36... 42 0.024
JC7686(JC7686)activator of cAMP-responsive element modulator, te... 42 0.024
AM393722_1(AM393722|pid:none) Synthetic construct Homo sapiens c... 42 0.024
BT056486_1(BT056486|pid:none) Salmo salar clone ssal-rgb2-624-31... 42 0.024
AY892978_1(AY892978|pid:none) Synthetic construct Homo sapiens c... 42 0.024
BT049822_1(BT049822|pid:none) Salmo salar clone ssal-rgb2-509-14... 42 0.024
BX950216_4(BX950216|pid:none) Zebrafish DNA sequence from clone ... 42 0.024
AF110763_1(AF110763|pid:none) Homo sapiens skeletal muscle LIM-p... 41 0.032
(P97447) RecName: Full=Four and a half LIM domains protein 1; ... 41 0.032
AJ493397_1(AJ493397|pid:none) Suberites domuncula partial mRNA f... 41 0.032
AL671998_1(AL671998|pid:none) Mouse DNA sequence from clone RP23... 41 0.032
BC129372_1(BC129372|pid:none) Danio rerio zgc:158673, mRNA (cDNA... 41 0.032
AL671998_5(AL671998|pid:none) Mouse DNA sequence from clone RP23... 41 0.032
CR857378_1(CR857378|pid:none) Pongo abelii mRNA; cDNA DKFZp468P2... 41 0.032
AL671998_6(AL671998|pid:none) Mouse DNA sequence from clone RP23... 41 0.032
DQ012167_1(DQ012167|pid:none) Danio rerio cypher/ZASP splice var... 41 0.032
(Q9Y630) RecName: Full=Four and a half LIM domains protein 1; ... 41 0.032
AJ275967_2(AJ275967|pid:none) Sus scrofa fhl1C gene for four and... 41 0.032
DQ012157_1(DQ012157|pid:none) Danio rerio cypher/ZASP splice var... 41 0.032
DQ012163_1(DQ012163|pid:none) Danio rerio cypher/ZASP splice var... 41 0.032
BC061782_1(BC061782|pid:none) Rattus norvegicus four and a half ... 41 0.032
AK304760_1(AK304760|pid:none) Homo sapiens cDNA FLJ61577 complet... 41 0.032
AJ275967_1(AJ275967|pid:none) Sus scrofa fhl1C gene for four and... 41 0.032
AL671998_2(AL671998|pid:none) Mouse DNA sequence from clone RP23... 41 0.032
AK301642_1(AK301642|pid:none) Homo sapiens cDNA FLJ55259 complet... 41 0.032
AJ243709_1(AJ243709|pid:none) Drosophila melanogaster mRNA for p... 41 0.032
AJ243710_1(AJ243710|pid:none) Drosophila melanogaster mRNA for p... 41 0.032
BT078194_1(BT078194|pid:none) Lepeophtheirus salmonis Pacific fo... 41 0.032
G02741(JC4893;G02741)skeletal muscle LIM-protein SLIM1 - human 41 0.032
AK122708_1(AK122708|pid:none) Homo sapiens cDNA FLJ16189 fis, cl... 41 0.032
BC171566_1(BC171566|pid:none) Danio rerio cDNA clone MGC:198293 ... 41 0.032
AK304680_1(AK304680|pid:none) Homo sapiens cDNA FLJ55274 complet... 41 0.032
CR858833_1(CR858833|pid:none) Pongo abelii mRNA; cDNA DKFZp468O1... 41 0.032
BT079181_1(BT079181|pid:none) Esox lucius clone eluc-evq-511-060... 41 0.032
DQ012164_1(DQ012164|pid:none) Danio rerio cypher/ZASP splice var... 41 0.032
CR457461_4(CR457461|pid:none) Zebrafish DNA sequence from clone ... 41 0.032
(Q7QJT4) RecName: Full=Protein prickle; 41 0.042
AF220153_1(AF220153|pid:none) Homo sapiens four and a half LIM d... 41 0.042
AK223165_1(AK223165|pid:none) Homo sapiens mRNA for leupaxin var... 41 0.042
(O60711) RecName: Full=Leupaxin; &AF062075_1(AF062075|pid:none)... 41 0.042
BT044983_1(BT044983|pid:none) Salmo salar clone ssal-rgf-509-033... 41 0.042
AL078638_8(AL078638|pid:none) Human DNA sequence from clone RP11... 41 0.042
(Q2KJ33) RecName: Full=LIM and senescent cell antigen-like-conta... 41 0.042
CR536531_1(CR536531|pid:none) Homo sapiens full open reading fra... 41 0.042
AL078638_6(AL078638|pid:none) Human DNA sequence from clone RP11... 41 0.042
AL671998_3(AL671998|pid:none) Mouse DNA sequence from clone RP23... 41 0.042
AK299264_1(AK299264|pid:none) Homo sapiens cDNA FLJ51550 complet... 41 0.042
BC088558_1(BC088558|pid:none) Xenopus tropicalis hypothetical LO... 35 0.047
BC047797_1(BC047797|pid:none) Danio rerio LIM domain and actin b... 37 0.050
BC078615_1(BC078615|pid:none) Xenopus laevis MGC85575 protein, m... 40 0.054
BT074680_1(BT074680|pid:none) Osmerus mordax clone omor-rgc-503-... 40 0.054
AK056499_1(AK056499|pid:none) Homo sapiens cDNA FLJ31937 fis, cl... 40 0.054
AK122881_1(AK122881|pid:none) Homo sapiens cDNA FLJ16528 fis, cl... 40 0.054
(Q3U5C7) RecName: Full=Prickle-like protein 1; &AK153711_1(AK15... 40 0.054
AY206012_1(AY206012|pid:none) Mus musculus PDZ-LIM protein cyphe... 40 0.054
BC021468_1(BC021468|pid:none) Mus musculus four and a half LIM d... 40 0.054
(Q2KI95) RecName: Full=Four and a half LIM domains protein 2; ... 40 0.054
BC077901_1(BC077901|pid:none) Xenopus laevis MGC80746 protein, m... 40 0.054
AY206013_1(AY206013|pid:none) Mus musculus PDZ-LIM protein cyphe... 40 0.054
(O35115) RecName: Full=Four and a half LIM domains protein 2; ... 40 0.054
(Q4R7A4) RecName: Full=Four and a half LIM domains protein 5; ... 40 0.054
(Q96MT3) RecName: Full=Prickle-like protein 1; AltName: Full=RES... 40 0.054
AF114378_1(AF114378|pid:none) Mus musculus PDZ-LIM protein cyphe... 40 0.054
(Q9R0Z1) RecName: Full=LIM domain-binding protein 3; AltName: Fu... 40 0.054
(O70433) RecName: Full=Four and a half LIM domains protein 2; ... 40 0.054
AE013599_305(AE013599|pid:none) Drosophila melanogaster chromoso... 40 0.054
AK172980_1(AK172980|pid:none) Mus musculus mRNA for mKIAA0613 pr... 40 0.054
(Q292U2) RecName: Full=Protein prickle; 40 0.054
AF228058_1(AF228058|pid:none) Mus musculus oracle 2 protein mRNA... 40 0.054
BT059646_1(BT059646|pid:none) Salmo salar clone ssal-rgf-502-137... 40 0.054
AB079512_1(AB079512|pid:none) Nicotiana tabacum Ntlim1 gene for ... 37 0.055
AF370574_1(AF370574|pid:none) Arabidopsis thaliana transcription... 37 0.057
FJ647811_1(FJ647811|pid:none) Tribolium castaneum apterous a (ap... 32 0.066
FN357585_12(FN357585|pid:none) Schistosoma mansoni genome sequen... 40 0.071
AM232751_1(AM232751|pid:none) Oreochromis aureus partial Fhl3 ge... 40 0.071
AB042816_1(AB042816|pid:none) Drosophila melanogaster DLIMK1 mRN... 40 0.071
AF172845_1(AF172845|pid:none) Manduca sexta death-associated LIM... 40 0.071
(Q8IR79) RecName: Full=LIM domain kinase 1; Short=LIMK-... 40 0.071
FN317571_1(FN317571|pid:none) Schistosoma japonicum isolate Anhu... 40 0.071
BC073254_1(BC073254|pid:none) Xenopus laevis MGC80605 protein, m... 40 0.071
AY809875_1(AY809875|pid:none) Schistosoma japonicum SJCHGC04856 ... 40 0.071
AE014298_1862(AE014298|pid:none) Drosophila melanogaster chromos... 40 0.071
FN357691_4(FN357691|pid:none) Schistosoma mansoni genome sequenc... 40 0.071
BC076551_1(BC076551|pid:none) Danio rerio PDZ and LIM domain 5, ... 40 0.071
BC045528_1(BC045528|pid:none) Mus musculus PDZ and LIM domain 7,... 40 0.071
AY641810_1(AY641810|pid:none) Rattus norvegicus myocardial ische... 40 0.093
BC003298_1(BC003298|pid:none) Mus musculus paxillin, mRNA (cDNA ... 40 0.093
BX649444_1(BX649444|pid:none) Zebrafish DNA sequence from clone ... 40 0.093
(Q55DS4) RecName: Full=LIM domain-containing protein G; 40 0.093
FN357583_5(FN357583|pid:none) Schistosoma mansoni genome sequenc... 40 0.093
AF312926_1(AF312926|pid:none) Drosophila melanogaster focal cont... 40 0.093
AF053486_1(AF053486|pid:none) Mus musculus LIM-protein FHL4 (Fhl... 40 0.093
BC082347_1(BC082347|pid:none) Xenopus tropicalis fhl3 protein, m... 40 0.093
JG0164(JG0164)LIM protein, FHL4 - mouse 40 0.093
AY971603_1(AY971603|pid:none) Xenopus laevis Hic-5 (Ara-55) mRNA... 40 0.093
C88346(C88346)protein F42G4.3a [imported] - Caenorhabditis elegans 40 0.093
AC091246_21(AC091246|pid:none) Oryza sativa (japonica cultivar-g... 40 0.093
AE014134_3180(AE014134|pid:none) Drosophila melanogaster chromos... 40 0.093
AF047353_1(AF047353|pid:none) Helianthus annuus LIM domain prote... 40 0.093
AF293882_1(AF293882|pid:none) Mus musculus paxillin alpha mRNA, ... 40 0.093
AE014134_3183(AE014134|pid:none) Drosophila melanogaster chromos... 40 0.093
FN357366_16(FN357366|pid:none) Schistosoma mansoni genome sequen... 40 0.093
T22111(T22111) hypothetical protein F42G4.3a - Caenorhabditis el... 40 0.093
(Q32L23) RecName: Full=LIM domain kinase 2; Short=LIMK-... 40 0.093
BC061148_1(BC061148|pid:none) Mus musculus four and a half LIM d... 40 0.093
AK057184_1(AK057184|pid:none) Homo sapiens cDNA FLJ32622 fis, cl... 40 0.093
(Q6AXT1) RecName: Full=Four and a half LIM domains protein 5; ... 40 0.093
U60117_1(U60117|pid:none) Human skeletal muscle LIM-protein SLIM... 40 0.093
AE014134_3184(AE014134|pid:none) Drosophila melanogaster chromos... 40 0.093
AY122248_1(AY122248|pid:none) Drosophila melanogaster SD04793 fu... 40 0.093
(Q2YDK0) RecName: Full=Four and a half LIM domains protein 5; ... 40 0.093
AB048194_1(AB048194|pid:none) Drosophila melanogaster DPXN mRNA ... 40 0.093
BT048479_1(BT048479|pid:none) Salmo salar clone ssal-evd-567-121... 40 0.093
BC036085_1(BC036085|pid:none) Homo sapiens four and a half LIM d... 40 0.093
FN314698_1(FN314698|pid:none) Schistosoma japonicum isolate Anhu... 40 0.093
AK148060_1(AK148060|pid:none) Mus musculus B16 F10Y cells cDNA, ... 40 0.093
AK005848_1(AK005848|pid:none) Mus musculus adult male testis cDN... 40 0.093
AL365205_8(AL365205|pid:none) Human DNA sequence from clone RP11... 40 0.093
BC125983_1(BC125983|pid:none) Xenopus laevis androgen receptor c... 40 0.093
AC012360_1(AC012360|pid:none) Homo sapiens BAC clone RP11-332H14... 40 0.093
(Q2TBC4) RecName: Full=Prickle-like protein 4; AltName: Full=Ove... 40 0.093
FN314699_1(FN314699|pid:none) Schistosoma japonicum isolate Anhu... 40 0.093
AK171436_1(AK171436|pid:none) Mus musculus B6-derived CD11 +ve d... 40 0.093
EU307287_1(EU307287|pid:none) Strongylocentrotus purpuratus Lhx2... 40 0.093
BC045922_1(BC045922|pid:none) Danio rerio zgc:56116, mRNA (cDNA ... 40 0.093
AM462939_1(AM462939|pid:none) Vitis vinifera contig VV78X214253.... 35 0.12
BC145754_1(BC145754|pid:none) Mus musculus prickle-like 2 (Droso... 39 0.12
EU954668_1(EU954668|pid:none) Zea mays clone 1476552 zinc ion bi... 39 0.12
EU956868_1(EU956868|pid:none) Zea mays clone 1576094 zinc ion bi... 39 0.12
BC099897_1(BC099897|pid:none) Mus musculus prickle-like 2 (Droso... 39 0.12
AM393400_1(AM393400|pid:none) Synthetic construct Homo sapiens c... 39 0.12
AF113518_1(AF113518|pid:none) Mus musculus LIM homeobox protein ... 39 0.12
AK297645_1(AK297645|pid:none) Homo sapiens cDNA FLJ56117 complet... 39 0.16
(Q9NZU5) RecName: Full=LIM and cysteine-rich domains protein 1; ... 39 0.16
CU638712_1(CU638712|pid:none) Zebrafish DNA sequence from clone ... 39 0.16
(Q7Z4I7) RecName: Full=LIM and senescent cell antigen-like-conta... 39 0.16
AF527766_1(AF527766|pid:none) Homo sapiens tissue-type spleen LI... 39 0.16
(Q91XD2) RecName: Full=LIM and senescent cell antigen-like-conta... 39 0.16
AF520987_1(AF520987|pid:none) Homo sapiens LIMS2 (LIMS2) mRNA, c... 39 0.16
(Q99N69) RecName: Full=Leupaxin; &AB053936_1(AB053936|pid:none)... 39 0.16
AF527770_1(AF527770|pid:none) Homo sapiens tissue-type brain LIM... 39 0.16
AF527767_1(AF527767|pid:none) Homo sapiens tissue-type uterus LI... 39 0.16
AK294455_1(AK294455|pid:none) Homo sapiens cDNA FLJ55018 complet... 39 0.16
AK055363_1(AK055363|pid:none) Homo sapiens cDNA FLJ30801 fis, cl... 39 0.16
BC095708_1(BC095708|pid:none) Danio rerio zgc:112257, mRNA (cDNA... 39 0.16
BC087108_1(BC087108|pid:none) Rattus norvegicus LIM and senescen... 39 0.16
BC088217_1(BC088217|pid:none) Rattus norvegicus leupaxin, mRNA (... 39 0.16
BC026563_1(BC026563|pid:none) Mus musculus leupaxin, mRNA (cDNA ... 39 0.16
BC160748_1(BC160748|pid:none) Xenopus laevis hypothetical protei... 39 0.16
AF527769_1(AF527769|pid:none) Homo sapiens tissue-type brain LIM... 39 0.16
BC144410_1(BC144410|pid:none) Homo sapiens paxillin, mRNA (cDNA ... 39 0.21
BC140671_1(BC140671|pid:none) Bos taurus prickle homolog 1, mRNA... 39 0.21
BT046814_1(BT046814|pid:none) Salmo salar clone ssal-evd-532-212... 39 0.21
AK128712_1(AK128712|pid:none) Homo sapiens cDNA FLJ46879 fis, cl... 39 0.21
AY449458_28(AY449458|pid:none) Oikopleura dioica clone BACOIKO00... 39 0.21
BT059482_1(BT059482|pid:none) Salmo salar clone ssal-rgf-529-375... 39 0.21
(A2I8Z7) RecName: Full=LIM/homeobox protein Lhx9; Short... 39 0.21
(Q68EY3) RecName: Full=LIM/homeobox protein Lhx9; Short... 39 0.21
D86863_1(D86863|pid:none) Homo sapiens mRNA for paxillin gamma, ... 39 0.21
(P49023) RecName: Full=Paxillin; &D86862_1(D86862|pid:none) 39 0.21
AC004263_2(AC004263|pid:none) Homo sapiens PAC clone 278C19 from... 39 0.21
FJ438942_1(FJ438942|pid:none) Xenopus laevis LHX9 mRNA, complete... 39 0.21
DQ353768_1(DQ353768|pid:none) Ictalurus punctatus isolate C24SC1... 39 0.21
(P49024) RecName: Full=Paxillin; &B55933(B55933) &L30099_1(L300... 39 0.21
BC139696_1(BC139696|pid:none) Danio rerio zgc:152958, mRNA (cDNA... 38 0.27
(Q17QE2) RecName: Full=LIM and cysteine-rich domains protein 1; ... 38 0.27
AM393090_1(AM393090|pid:none) Synthetic construct Homo sapiens c... 38 0.27
BC075889_1(BC075889|pid:none) Danio rerio testis derived transcr... 38 0.27
BC013051_1(BC013051|pid:none) Homo sapiens LIM domain kinase 2, ... 38 0.27
D85527_1(D85527|pid:none) Homo sapiens LIMK2b mRNA, partial cds. 38 0.27
CR762227_1(CR762227|pid:none) Xenopus tropicalis finished cDNA, ... 38 0.27
AC090119_5(AC090119|pid:none) Takifugu rubripes clone 242D16, co... 38 0.27
CU638735_1(CU638735|pid:none) Zebrafish DNA sequence from clone ... 38 0.27
AL117466_1(AL117466|pid:none) Homo sapiens mRNA; cDNA DKFZp586K0... 38 0.27
AE017348_237(AE017348|pid:none) Cryptococcus neoformans var. neo... 38 0.27
AC002073_3(AC002073|pid:none) Human PAC clone RP3-515N1 from 22q... 38 0.27
CR853286_10(CR853286|pid:none) Zebrafish DNA sequence from clone... 38 0.27
(A0M8U6) RecName: Full=Testin; 38 0.27
AB002779_1(AB002779|pid:none) Entamoeba histolytica mRNA for cys... 38 0.27
BC061449_1(BC061449|pid:none) Danio rerio zgc:63514, mRNA (cDNA ... 38 0.27
AY335601_1(AY335601|pid:none) Synthetic construct Homo sapiens L... 38 0.27
DQ167188_1(DQ167188|pid:none) Brassica rapa putative transcripti... 38 0.35
(Q8I7C3) RecName: Full=LIM and SH3 domain protein Lasp; &AE0142... 38 0.35
BT001714_1(BT001714|pid:none) Drosophila melanogaster RE67887 fu... 38 0.35
(A0M8S5) RecName: Full=Testin; 38 0.35
AJ294538_1(AJ294538|pid:none) Drosophila melanogaster mRNA for L... 38 0.35
AE014297_765(AE014297|pid:none) Drosophila melanogaster chromoso... 38 0.35
(Q90YH9) RecName: Full=Testin; &AJ315664_1(AJ315664|pid:none) 38 0.35

>(Q9BIW5) RecName: Full=LIM domain-containing protein C;
&AF348466_1(AF348466|pid:none)
Length = 182

Score = 130 bits (326), Expect(2) = 4e-48
Identities = 64/91 (70%), Positives = 64/91 (70%)
Frame = +3

Query: 132 ILQLGQYSERDGQPYCKTDYDRLFRQAGYRGGGVVADSFXXXXXXXXXXXXXXXXXXXXX 311
ILQLGQYSERDGQPYCKTDYDRLFRQAGYRGGGVVADSF
Sbjct: 38 ILQLGQYSERDGQPYCKTDYDRLFRQAGYRGGGVVADSFEPAPKVETTTPVEPTPPPTFL 97

Query: 312 XXXXXXKVQLFPTNCPKCGKKAYFNELKVYN 404
KVQLFPTNCPKCGKKAYFNELKVYN
Sbjct: 98 TPTEEVKVQLFPTNCPKCGKKAYFNELKVYN 128

Score = 85.1 bits (209), Expect(2) = 4e-48
Identities = 36/36 (100%), Positives = 36/36 (100%)
Frame = +2

Query: 20 MSSICPTCTKRVYAAEAVKACEKQYHKLCLQCFHCH 127
MSSICPTCTKRVYAAEAVKACEKQYHKLCLQCFHCH
Sbjct: 1 MSSICPTCTKRVYAAEAVKACEKQYHKLCLQCFHCH 36

Score = 127 bits (319), Expect = 3e-28
Identities = 57/66 (86%), Positives = 58/66 (87%)
Frame = +1

Query: 370 RKHTLMNLKFITSRDWHKTCFACFSCNKNLVSGQYSEKEGLIYCPRCYQSKFGPSGYTNT 549
+K LK SRDWHKTCFACFSCNKNLVSGQYSEKEGLIYCPRCYQSKFGPSGYTNT
Sbjct: 117 KKAYFNELKVYNSRDWHKTCFACFSCNKNLVSGQYSEKEGLIYCPRCYQSKFGPSGYTNT 176

Query: 550 GALVLH 567
GALVLH
Sbjct: 177 GALVLH 182

Score = 50.1 bits (118), Expect = 7e-05
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +1

Query: 409 RDWHKTCFACFSCNKNLVSGQYSEKEGLIYCPRCYQSKFGPSGYTNTGAL 558
+ +HK C CF C+K L GQYSE++G YC Y F +GY G +
Sbjct: 23 KQYHKLCLQCFHCHKILQLGQYSERDGQPYCKTDYDRLFRQAGYRGGGVV 72

Score = 35.8 bits (81), Expect(2) = 5e-04
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2

Query: 32 CPTCTKRVYAAEAVKACEKQYHKLCLQCFHCHNN 133
CP C K+ Y E + +HK C CF C+ N
Sbjct: 112 CPKCGKKAYFNELKVYNSRDWHKTCFACFSCNKN 145

Score = 30.8 bits (68), Expect(2) = 5e-04
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3

Query: 144 GQYSERDGQPYCKTDYDRLFRQAGYRGGGVV 236
GQYSE++G YC Y F +GY G +
Sbjct: 149 GQYSEKEGLIYCPRCYQSKFGPSGYTNTGAL 179

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 828,124,580
Number of extensions: 12685169
Number of successful extensions: 35563
Number of sequences better than 10.0: 766
Number of HSP's gapped: 35425
Number of HSP's successfully gapped: 1966
Length of query: 237
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 112
Effective length of database: 646,610,989
Effective search space: 72420430768
Effective search space used: 72420430768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.91 gvh: 0.33 alm: 0.59 top: 0.60 tms: 0.00 mit: 0.48 mip: 0.00
nuc: 0.50 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: nuclear
16.0 %: cytoplasmic
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for Contig-U02223-1 is nuc

VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0