Contig-U13435-1 |
Contig ID |
Contig-U13435-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
519 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
4934948 |
End point |
4935467 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U13435 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12. 9 |
Homology vs DNA |
Query= Contig-U13435-1 (Contig-U13435-1Q) /CSM_Contig/Contig-U13435-1Q.Seq.d (519 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(C91373) Dictyostelium discoideum slug cDNA, clone SSK139. 559 e-175 3 (AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s... 52 0.020 1 (AC095893) Rattus norvegicus clone CH230-10N8, *** SEQUENCIN... 42 0.044 3 (CU914642) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.079 1 (BH457128) BOHAR94TF BOHA Brassica oleracea genomic clone BO... 50 0.079 1 (BZ460819) BONMW30TR BO_1.6_2_KB_tot Brassica oleracea genom... 50 0.079 1 (FG607144) stem_S019_C11.SEQ Opium poppy stem cDNA library P... 48 0.31 1 (FG603382) PF_T3_51R_F04_14Aug2003_022 Opium poppy root cDNA... 48 0.31 1 (FF635596) G825P572FH2.T0 Acorn worm normalized gastrula pEx... 40 1.1 2 (BX005125) Zebrafish DNA sequence from clone CH211-127I16 in... 46 1.2 1 (BV615955) S217P60439RB3.T0 Noemie Pan troglodytes troglodyt... 46 1.2 1 (AL356866) Human DNA sequence from clone RP11-211D10 on chro... 46 1.2 1 (AC069510) Homo sapiens 3 BAC RP11-395P20 (Roswell Park Canc... 46 1.2 1 (AC149240) Muntiacus muntjak vaginalis clone CH244-83P16, WO... 46 1.2 1 (AC182219) Bos taurus clone CH240-515C3, WORKING DRAFT SEQUE... 46 1.2 1 (EK382943) 1095469469290 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.2 1 (EK374305) 1095469432041 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.2 1 (AC180531) Strongylocentrotus purpuratus clone R3-3098G20, W... 42 1.3 2 (FF667231) G826P5361FH6.T0 Acorn worm normalized juvenile pE... 40 1.4 2 (FF635898) G825P575FD11.T0 Acorn worm normalized gastrula pE... 40 1.5 2 (FF505758) G709P5200FH9.T0 Acorn worm normalized neurula pEx... 40 1.5 2 (FF615419) G825P5186FE10.T0 Acorn worm normalized gastrula p... 40 1.6 2 (AC179079) Strongylocentrotus purpuratus clone R3-4009H20, W... 42 1.6 2 (FF513793) G709P569FE7.T0 Acorn worm normalized neurula pExp... 40 1.7 2 (AC180146) Strongylocentrotus purpuratus clone R3-4004B14, W... 42 1.7 2 (AC181503) Strongylocentrotus purpuratus clone R3-58G5, WORK... 42 1.8 2 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 38 2.2 8 (BX005151) Zebrafish DNA sequence from clone CH211-11M20. 34 2.5 2 (AL935049) Zebrafish DNA sequence from clone CH211-185K2 in ... 40 2.5 3 (BJ336448) Dictyostelium discoideum cDNA clone:dda53o19, 5' ... 36 3.0 2 (BJ334137) Dictyostelium discoideum cDNA clone:dda45c11, 5' ... 36 3.0 2 (BJ393869) Dictyostelium discoideum cDNA clone:dds32m23, 5' ... 36 3.2 2 (CZ929558) 246976 Tomato EcoRI BAC Library Solanum lycopersi... 34 3.2 2 (AC015905) Homo sapiens clone RP11-44A10, WORKING DRAFT SEQU... 38 3.7 3 (CU861902) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 3.8 4 (AL732482) Mouse DNA sequence from clone RP23-199C21 on chro... 42 4.1 4 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 38 4.5 7 (CR382301) Zebrafish DNA sequence from clone CH211-257P1 in ... 44 4.9 1 (BX649440) Zebrafish DNA sequence from clone CH211-198M12 in... 44 4.9 1 (BX119901) Zebrafish DNA sequence from clone CH211-194D7 in ... 44 4.9 1 (CR382138) Debaryomyces hansenii chromosome F of strain CBS7... 44 4.9 1 (AC189617) Brassica rapa subsp. pekinensis clone KBrH102A07,... 44 4.9 1 (AC152843) Muntiacus muntjak vaginalis clone CH244-547G20, W... 44 4.9 1 (AC112008) Rattus norvegicus clone CH230-236B13, WORKING DRA... 44 4.9 1 (AC108637) Rattus norvegicus clone CH230-276G19, *** SEQUENC... 44 4.9 1 (CU467779) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.9 1 (AC212632) Solanum lycopersicum chromosome 7 clone C07HBa012... 44 4.9 1 (AC181066) Strongylocentrotus purpuratus clone R3-3050C22, W... 44 4.9 1 (AC178116) Strongylocentrotus purpuratus clone R3-3074C01, W... 44 4.9 1 (AC176548) Strongylocentrotus purpuratus clone R3-114H03, WO... 44 4.9 1 (AC168700) Strongylocentrotus purpuratus clone R3-3014D17, W... 44 4.9 1 (AC165372) Muntiacus reevesi clone CH245-186H24, WORKING DRA... 44 4.9 1 (AM678170) Entamoeba terrapinae GSS, clone terra161d08.q1k. 44 4.9 1 (AM676767) Entamoeba terrapinae GSS, clone terra122f05.p1k. 44 4.9 1 (ED730588) GM_WBb0087H23.r GM_WBb Glycine max genomic clone ... 44 4.9 1 (AL438817) T3 end of clone XBC0AA002F05 of library XBC0AA fr... 44 4.9 1 (AL436488) T3 end of clone BC0AA003F03 of library BC0AA from... 44 4.9 1 (AG987967) Hemicentrotus pulcherrimus BAC clone: BUB1-11B24_... 44 4.9 1 (BZ164025) CH230-276D16.TJB CHORI-230 Segment 2 Rattus norve... 44 4.9 1 (BX227980) Danio rerio genomic clone DKEY-245K1, genomic sur... 44 4.9 1 (BH734515) BOMOT94TR BO_2_3_KB Brassica oleracea genomic clo... 44 4.9 1 (AI731095) BNLGHi8663 Six-day Cotton fiber Gossypium hirsutu... 44 4.9 1 (AI730686) BNLGHi7677 Six-day Cotton fiber Gossypium hirsutu... 44 4.9 1 (DX542332) GH_MBb0030B10f GH_MBb Gossypium hirsutum genomic ... 32 5.0 3 (FF635665) G825P573FD11.T0 Acorn worm normalized gastrula pE... 38 5.5 2 (AC102418) Mus musculus chromosome 3, clone RP24-499L10, com... 38 6.1 2 (EL502820) E02_PFLAB1-LARGE-PLATE11B.AB1 Blood stage Plasmod... 40 7.7 2 (AC130928) Rattus norvegicus clone CH230-24G1, *** SEQUENCIN... 30 8.6 2 (AC111340) Rattus norvegicus clone CH230-239C23, *** SEQUENC... 30 8.7 2 (BX005431) Zebrafish DNA sequence from clone CH211-214G2 in ... 32 8.7 2 (AL161897) Human DNA sequence from clone RP11-262G14 on chro... 36 8.8 4 (DU944336) 364705 Tomato EcoRI BAC Library Solanum lycopersi... 38 9.6 2 (CT573396) Zebrafish DNA sequence from clone DKEY-88N10 in l... 32 9.9 2
>(C91373) Dictyostelium discoideum slug cDNA, clone SSK139. Length = 520
Score = 559 bits (282), Expect(3) = e-175 Identities = 282/282 (100%) Strand = Plus / Plus
Query: 1 tttatttataatacaattttaaatcataaatatttaacatcattatccattacacatcgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tttatttataatacaattttaaatcataaatatttaacatcattatccattacacatcgt 60
Query: 61 tgtcctgaaagttttgaattgaatcagttttatactggttcttatcaatcaagttcaaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tgtcctgaaagttttgaattgaatcagttttatactggttcttatcaatcaagttcaaca 120
Query: 121 tcgatatcgagggaatttattgagaatttcggttcaatgattttaaataatcaatcaata 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tcgatatcgagggaatttattgagaatttcggttcaatgattttaaataatcaatcaata 180
Query: 181 aagtcattaagattatctggatttcatacaccttcactatttgaatatgttatggcaaat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aagtcattaagattatctggatttcatacaccttcactatttgaatatgttatggcaaat 240
Query: 241 aaaagaataataaagtataaatcggaattcattgatacttta 282 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aaaagaataataaagtataaatcggaattcattgatacttta 282
Score = 79.8 bits (40), Expect(3) = e-175 Identities = 40/40 (100%) Strand = Plus / Plus
Query: 351 tcatttacatgaaattagtttcactggtgattatataagg 390 |||||||||||||||||||||||||||||||||||||||| Sbjct: 351 tcatttacatgaaattagtttcactggtgattatataagg 390
Score = 38.2 bits (19), Expect(3) = e-175 Identities = 19/19 (100%) Strand = Plus / Plus
Query: 450 gaatccatattgtgatttc 468 ||||||||||||||||||| Sbjct: 450 gaatccatattgtgatttc 468
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 433,542,148 Number of extensions: 27281816 Number of successful extensions: 2289929 Number of sequences better than 10.0: 74 Length of query: 519 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 496 Effective length of database: 93,106,754,628 Effective search space: 46180950295488 Effective search space used: 46180950295488 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
|
protein update |
2009. 7. 7 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |