Contig-U13418-1 |
Contig ID |
Contig-U13418-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
176 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
3470452 |
End point |
3470276 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U13418 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12. 9 |
Homology vs DNA |
Query= Contig-U13418-1 (Contig-U13418-1Q) /CSM_Contig/Contig-U13418-1Q.Seq.d (176 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU073594) Dictyostelium discoideum slug cDNA, clone SSH623. 254 2e-68 2 (AC020895) Homo sapiens chromosome 19 clone CTC-312O10, comp... 40 0.016 2 (AC025278) Homo sapiens chromosome 19 clone RP11-1137G4, com... 40 0.016 2 (AC179133) Strongylocentrotus purpuratus clone R3-4011N21, W... 40 0.060 2 (BJ384409) Dictyostelium discoideum cDNA clone:ddc49i08, 3' ... 34 0.063 3 (AC103074) Rattus norvegicus clone CH230-174A13, *** SEQUENC... 48 0.097 1 (EJ650493) 1092953009319 Global-Ocean-Sampling_GS-30-02-01-1... 44 0.19 2 (CK283145) EST745867 Nicotiana benthamiana mixed tissue cDNA... 32 0.20 3 (AC168696) Strongylocentrotus purpuratus clone R3-3014G20, W... 36 0.22 2 (AC009492) Homo sapiens BAC clone RP11-423F9 from 2, complet... 36 0.22 2 (AC138475) Homo sapiens chromosome 16 clone CTD-3073N7, WORK... 36 0.22 2 (AC040167) Homo sapiens chromosome 16 clone RP11-457P5, WORK... 36 0.22 2 (AC092122) Homo sapiens chromosome 16 clone RP11-102F12, com... 36 0.22 2 (AC022195) Homo sapiens clone RP11-24P20, WORKING DRAFT SEQU... 36 0.22 2 (EK393270) 1095469509733 Global-Ocean-Sampling_GS-31-01-01-1... 44 0.23 2 (EK181907) 1095458126146 Global-Ocean-Sampling_GS-31-01-01-1... 44 0.26 2 (EJ685602) 1092955174843 Global-Ocean-Sampling_GS-30-02-01-1... 44 0.27 2 (CQ328278) Sequence 2372 from Patent WO0157275. 36 0.29 2 (CQ291161) Sequence 2266 from Patent WO0186003. 36 0.29 2 (CQ254150) Sequence 2411 from Patent WO0157277. 36 0.29 2 (CQ215557) Sequence 2396 from Patent WO0157273. 36 0.29 2 (CQ200076) Sequence 2353 from Patent WO0157271. 36 0.29 2 (CQ170925) Sequence 2321 from Patent WO0157274. 36 0.29 2 (CQ132360) Sequence 2382 from Patent WO0157276. 36 0.29 2 (CQ093586) Sequence 2445 from Patent WO0157272. 36 0.29 2 (CQ066540) Sequence 2340 from Patent WO0157278. 36 0.29 2 (CQ051492) Sequence 2312 from Patent WO0157270. 36 0.29 2 (AB137430) Homo sapiens DNA, STS on chromosome 16, D16S0175i... 36 0.29 2 (DJ469508) Method for analysing genome using microsatellite ... 36 0.29 2 (CV346289) MR1-TN0045-110900-007-a07 TN0045 Homo sapiens cDN... 36 0.29 2 (AC180315) Strongylocentrotus purpuratus clone R3-3119D02, W... 40 0.30 4 (CQ341000) Sequence 15094 from Patent WO0157275. 36 0.30 2 (CQ303669) Sequence 14774 from Patent WO0186003. 36 0.30 2 (CQ266718) Sequence 14979 from Patent WO0157277. 36 0.30 2 (CQ228562) Sequence 15401 from Patent WO0157273. 36 0.30 2 (CQ205183) Sequence 7460 from Patent WO0157271. 36 0.30 2 (CQ180806) Sequence 12202 from Patent WO0157274. 36 0.30 2 (CQ145368) Sequence 15390 from Patent WO0157276. 36 0.30 2 (CQ106714) Sequence 15573 from Patent WO0157272. 36 0.30 2 (CQ075733) Sequence 11533 from Patent WO0157278. 36 0.30 2 (CQ056467) Sequence 7287 from Patent WO0157270. 36 0.30 2 (AC189743) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 46 0.38 1 (AC184642) Strongylocentrotus purpuratus clone R3-1031N8, WO... 46 0.38 1 (FH651640) CHO_OF4397xl19r2.ab1 CHO_OF4 Nicotiana tabacum ge... 46 0.38 1 (FH651556) CHO_OF4397xl19r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 0.38 1 (FH651446) CHO_OF4397xl19f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 0.38 1 (FH647037) CHO_OF4988xm09f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 0.38 1 (FH288047) CHO_OF4201xl16r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 0.38 1 (DX581105) SBA003_M05.f Sugar beet BAC library USH20 (Code S... 46 0.38 1 (AC114209) Rattus norvegicus clone CH230-198O21, WORKING DRA... 38 0.77 3 (DT483361) WS02522.B21_G03 PT-MB-N-A-15 Populus trichocarpa ... 38 0.78 2 (DT478293) WS02522.BR_G03 PT-MB-N-A-15 Populus trichocarpa c... 38 0.78 2 (AC106389) Rattus norvegicus clone CH230-140G24, WORKING DRA... 34 0.80 2 (AC195417) Pan troglodytes BAC clone CH251-141L7 from chromo... 36 0.81 2 (AC017047) Homo sapiens BAC clone RP11-323F10 from X, comple... 36 0.81 2 (AC021859) Homo sapiens chromosome UL clone RP11-585K14, WOR... 36 0.81 2 (AC213968) Sorex araneus clone SA_Ba-527P10, WORKING DRAFT S... 36 0.82 2 (AC209506) Sorex araneus clone SA_Ba-403I10, WORKING DRAFT S... 36 0.82 2 (AC107020) Homo sapiens 12 BAC RP11-271J4 (Roswell Park Canc... 34 0.83 2 (AC177040) Strongylocentrotus purpuratus clone R3-1038F06, W... 32 0.83 2 (AC119041) Homo sapiens X BAC RP11-585K14 (Roswell Park Canc... 36 0.84 2 (BZ164233) CH230-246O13.TJB CHORI-230 Segment 2 Rattus norve... 36 0.84 2 (AZ677864) ENTJG43TF Entamoeba histolytica Sheared DNA Entam... 34 0.93 2 (DQ696526) Mus musculus piRNA piR-111848, complete sequence. 44 1.5 1 (DQ691215) Mus musculus piRNA piR-106537, complete sequence. 44 1.5 1 (DQ689159) Mus musculus piRNA piR-104481, complete sequence. 44 1.5 1 (CT010485) Mouse DNA sequence from clone CH29-161F5 on chrom... 44 1.5 1 (AC144410) Mus musculus BAC clone RP23-479N14 from chromosom... 44 1.5 1 (AC125141) Mus musculus BAC clone RP24-333C3 from chromosome... 44 1.5 1 (AC149600) Medicago truncatula chromosome 2 clone mte1-41j24... 44 1.5 1 (AC096517) Rattus norvegicus clone CH230-16H15, WORKING DRAF... 44 1.5 1 (AC094818) Rattus norvegicus clone CH230-5J9, WORKING DRAFT ... 44 1.5 1 (AC179771) Strongylocentrotus purpuratus clone R3-1016G12, W... 44 1.5 1 (EK326396) 1095467008186 Global-Ocean-Sampling_GS-31-01-01-1... 44 1.5 1 (EL610360) mfcorj6c6 Medicago falcata SSH Library of cold-re... 44 1.5 1 (DW016599) EST1225560 MTY Medicago truncatula cDNA clone MTY... 44 1.5 1 (AM809520) Nicotiana tabacum EST, clone nt005043064. 44 1.5 1 (CX535183) s13dNF95C08MJ066_388543 Methyl Jasmonate-Elicited... 44 1.5 1 (CF450667) EST687012 normalized cDNA library of onion Allium... 44 1.5 1 (CF446303) EST682648 normalized cDNA library of onion Allium... 44 1.5 1 (CF442290) EST678635 normalized cDNA library of onion Allium... 44 1.5 1 (CF441532) EST677877 normalized cDNA library of onion Allium... 44 1.5 1 (BU725369) SJMCDD07 SJM Schistosoma japonicum cDNA, mRNA seq... 44 1.5 1 (BI269999) NF004A03FL1F1021 Developing flower Medicago trunc... 44 1.5 1 (BI263995) NF092E11PL1F1087 Phosphate starved leaf Medicago ... 44 1.5 1 (BI263561) NF087H10PL1F1092 Phosphate starved leaf Medicago ... 44 1.5 1 (BF642279) NF059C06IN1F1049 Insect herbivory Medicago trunca... 44 1.5 1 (BE323903) NF011A11PL1F1081 Phosphate starved leaf Medicago ... 44 1.5 1 (FD463129) LARVX40TR Haematobia irritans 1st Instar Larvae H... 44 1.5 1 (FD460561) LARVG09TR Haematobia irritans 1st Instar Larvae H... 44 1.5 1 (FD460560) LARVG09TF Haematobia irritans 1st Instar Larvae H... 44 1.5 1 (AW688186) NF004D09ST1F1000 Developing stem Medicago truncat... 44 1.5 1 (AW586765) EST318388 MHAM Medicago truncatula/Glomus versifo... 44 1.5 1 (EV255873) MTYCP88TF JCVI-MT1 Medicago truncatula cDNA 5', m... 44 1.5 1 (EU795096) Uncultured bacterium ARCTIC31_H_08 genomic sequence. 44 1.5 1 (CT572989) Mouse DNA sequence from clone RP24-176J14 on chro... 42 1.9 4 (FC593002) CAXP7337.fwd CAXP Lottia gigantea from head, foot... 34 2.6 2 (AC106661) Rattus norvegicus clone CH230-74C23, *** SEQUENCI... 32 2.8 2 (FC594766) CAXP8773.fwd CAXP Lottia gigantea from head, foot... 34 2.8 2 (AC114216) Rattus norvegicus clone CH230-315N24, *** SEQUENC... 30 2.8 2
>(AU073594) Dictyostelium discoideum slug cDNA, clone SSH623. Length = 177
Score = 254 bits (128), Expect(2) = 2e-68 Identities = 131/131 (100%) Strand = Plus / Plus
Query: 21 ttttaccaaatacattttcaccaaatctacaacctcaacaaccattgtcatcatcttcat 80 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 21 ttttaccaaatacattttcaccaaatctacaacctcaacaaccattgtcatcatcttcat 80
Query: 81 caacaataaatacaccatcatcaccaaatcaattaaattcaccctcaatngaggatcaaa 140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81 caacaataaatacaccatcatcaccaaatcaattaaattcaccctcaatngaggatcaaa 140
Query: 141 tggaggaatat 151 ||||||||||| Sbjct: 141 tggaggaatat 151
Score = 36.2 bits (18), Expect(2) = 2e-68 Identities = 18/18 (100%) Strand = Plus / Plus
Query: 159 ttcatagagataaatata 176 |||||||||||||||||| Sbjct: 159 ttcatagagataaatata 176
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 182,857,717 Number of extensions: 12711803 Number of successful extensions: 3543038 Number of sequences better than 10.0: 286 Length of query: 176 Length of database: 95,242,211,685 Length adjustment: 22 Effective length of query: 154 Effective length of database: 93,199,600,587 Effective search space: 14352738490398 Effective search space used: 14352738490398 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
|
protein update |
2009. 7. 7 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |