Contig-U13413-1
Contig ID Contig-U13413-1
Contig update 2002.12.18
Contig sequence
>Contig-U13413-1 (Contig-U13413-1Q) /CSM_Contig/Contig-U13413-1Q.Seq.d
ATTATTCAAATTCTTTTTTATTTTTGTAGTAAAAATTTACATATTTTAAT
ATTACAATGTTAACTAATAATGACAATTTATCAAGAAGTTCAAAAATTTG
CCAAGGGTTATGACTTAAATCAAGATGGCGTATTAACTTCACAAGAAATA
TATTATTCACTTCTAAAAAAAATGAATGGCAATTCTTATGAGGCATCAAA
AGCAACTGGTGTTTTATGTTCAACAATTGATATAAACAAAGATGGTAAAT
TCAGTTATCATGAAATTGCTAAATATTGTGCTGACAATGCAAAAAAACTA
ATTGAACAAAATGCTGATATTGCTGCATTGGCTGATGTTGAAGCTTTTTT
ATTAAGATTTGATAAAGATAAGGATAGAAAATTAAACAAAACAGAATTTG
TTGAATACTTCAAAGGAGGAACAGATACCCCATACTCTGATCGTGATTAT
GTTCTTAAAATTATTGATTTGGATAAAGATGGATGTGTTTCCGCAAATGA
ATTACAAGAATGGTTCAAAAAAAAAAAGAATTGATTACGCAACAATGCTT
TCTGCAAGAGGTCCAAATTGTTAAATTCTCTTGGGACATAATACCACATT
AATCTTATTTTTTAAGGTTTTTAAATTTGGTACAAAAACAATAAAAATTA
AATAAATATTCAATTTCCATTGTCCAAAATCCAAATTCTATATTTTTTTT
AATTTTTATTTATTTTTTTATTAAATTTTAAATAAATATTAATATCGTAA
TAGTAATTTGATGTAAAAAAAAAAAAAAAAAAAAA

Gap no gap
Contig length 785
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 90
Number of EST 97
Link to clone list U13413
List of clone(s)

est1=SLK403F,-37,254
est2=SHF815E,-15,631
est3=AHC773F,1,525
est4=SHK731F,1,533
est5=SSJ723F,5,687
est6=SSL518Z,12,640
est7=SLK232F,13,273
est8=SSC631E,13,642
est9=SSC684E,13,697
est10=SSA815F,14,366
est11=SSA505Z,18,639
est12=SSA123F,20,608
est13=SSI258E,20,688
est14=SSK806E,21,640
est15=SSL582E,21,702
est16=SSK215Z,26,697
est17=SSI246E,29,611
est18=SLB331F,30,613
est19=SLD295F,30,367
est20=SLD326F,30,361
est21=SLD394F,30,294
est22=SLD458F,30,322
est23=SLD566F,30,351
est24=SLD627F,30,244
est25=SLD751F,30,208
est26=SLF816F,30,346
est27=SSA175F,30,589
est28=SSF171E,32,739
est29=SLB493Z,45,659
est30=SSD410Z,46,671
est31=SSF489Z,47,713
est32=SSD345Z,53,727
est33=SSH602F,56,371
est34=SSM254Z,56,714
est35=SLB425Z,67,659
est36=SSM536Z,67,697
est37=SSF123F,71,704
est38=SSD832Z,73,709
est39=SSH174Z,73,676
est40=SSA591Z,78,705
est41=SSK322Z,78,702
est42=SSJ865Z,79,639
est43=SSK301Z,80,680
est44=SSD683Z,81,695
est45=SLC556Z,84,659
est46=SSE532Z,85,690
est47=SSM207Z,91,682
est48=SSE859Z,93,786
est49=SLA876Z,95,659
est50=SSJ883Z,98,708
est51=SSF479Z,103,698
est52=SSD632Z,108,655
est53=SLB362Z,114,659
est54=SSK474Z,114,640
est55=SSE363Z,117,691
est56=SSA837Z,121,639
est57=SSH412Z,122,693
est58=SSI112E,128,660
est59=SSH413Z,131,693
est60=SLA389Z,142,659
est61=SSE540Z,154,714
est62=SLD326Z,163,659
est63=SLA250Z,170,659
est64=SSC858Z,171,718
est65=SSI132Z,171,670
est66=SSM746Z,173,711
est67=SSD391Z,177,696
est68=SSH239Z,190,687
est69=SSK339Z,214,715
est70=SSA282Z,225,726
est71=SSE656Z,226,691
est72=SLB530Z,233,659
est73=SLB516Z,236,659
est74=SLB579Z,240,659
est75=SLD344F,247,452
est76=SSF182E,262,664
est77=SSB409Z,276,781
est78=SSM154Z,278,698
est79=SSB863Z,286,698
est80=SSK307Z,288,727
est81=SSL419Z,292,697
est82=SLA255Z,295,659
est83=SLA585Z,309,659
est84=SSM829Z,313,684
est85=SSI122Z,352,726
est86=SSM881E,384,639
est87=SLA590Z,387,659
est88=SSA815Z,390,693
est89=SLD566Z,412,659
est90=SLF816Z,413,659
est91=SLD507Z,420,659
est92=SSL482Z,432,687
est93=SLD539Z,435,659
est94=SSF162E,459,680
est95=SLK403Z,497,691
est96=SHK731Z,513,645
est97=SLK232Z,542,696
Translated Amino Acid sequence
iiqilfyfcsknlhililqc*LIMTIYQEVQKFAKGYDLNQDGVLTSQEIYYSLLKKMNG
NSYEASKATGVLCSTIDINKDGKFSYHEIAKYCADNAKKLIEQNADIAALADVEAFLLRF
DKDKDRKLNKTEFVEYFKGGTDTPYSDRDYVLKIIDLDKDGCVSANELQEWFKKKKN*lr
nnafckrskllnslgt*yhinlif*gf*iwyknnkn*iniqfplskiqilyff*flfifl
lnfk*ilis***fdvkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
iiqilfyfcsknlhililqc*LIMTIYQEVQKFAKGYDLNQDGVLTSQEIYYSLLKKMNG
NSYEASKATGVLCSTIDINKDGKFSYHEIAKYCADNAKKLIEQNADIAALADVEAFLLRF
DKDKDRKLNKTEFVEYFKGGTDTPYSDRDYVLKIIDLDKDGCVSANELQEWFKKKKN*lr
nnafckrskllnslgt*yhinlif*gf*iwyknnkn*iniqfplskiqilyff*flfifl
lnfk*ilis***fdvkkkkkk


Frame B:
lfkfffifvvkiyif*yynvn***qfikkfknlprvmt*ikmay*lhkkyiihf*kk*ma
ilmrhqkqlvfyvqqli*tkmvnsvimkllnivltmqkn*lnkmlillhwlmlklfy*dl
ikirien*tkqnllntskeeqiphtlivimflklliwikmdvfpqmnykngskkkridya
tmlsargpnc*illghnttlilffkvfkfgtktikik*ifnfhcpkskfyiffnfylffy
*ilnky*yrnsnlm*kkkkkk


Frame C:
ysnsflfl**kftyfnitmltnndnlsrsskicqgl*lksrwrinftrnilftskknewq
fl*giksnwcfmfnn*ykqrw*iqls*nc*ilc*qckktn*tkc*yccig*c*sffiki*
*r*g*kikqnric*ilqrrnrypil*s*lcs*ny*fg*rwmcfrk*itrmvqkkkelitq
qcflqevqivkfswdiiph*syflrflnlvqkq*klnkysisivqnpnsifflifiyffi
kf*ininivivi*ckkkkkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U13413-1 (Contig-U13413-1Q)
/CSM_Contig/Contig-U13413-1Q.Seq.d
(785 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U13413-1 (Contig-U13413-1Q) /CSM_Contig/Conti... 1029 0.0
Contig-U12436-1 (Contig-U12436-1Q) /CSM_Contig/Conti... 48 1e-05
Contig-U01598-1 (Contig-U01598-1Q) /CSM_Contig/Conti... 38 0.014
Contig-U14615-1 (Contig-U14615-1Q) /CSM_Contig/Conti... 34 0.22
Contig-U13521-1 (Contig-U13521-1Q) /CSM_Contig/Conti... 34 0.22
Contig-U11691-1 (Contig-U11691-1Q) /CSM_Contig/Conti... 34 0.22
Contig-U06034-1 (Contig-U06034-1Q) /CSM_Contig/Conti... 34 0.22
Contig-U06030-1 (Contig-U06030-1Q) /CSM_Contig/Conti... 34 0.22
Contig-U02840-1 (Contig-U02840-1Q) /CSM_Contig/Conti... 34 0.22
Contig-U14329-1 (Contig-U14329-1Q) /CSM_Contig/Conti... 32 0.86

>Contig-U13413-1 (Contig-U13413-1Q) /CSM_Contig/Contig-U13413-1Q.Seq.d
Length = 785

Score = 1029 bits (519), Expect = 0.0
Identities = 571/597 (95%)
Strand = Plus / Plus


Query: 26 gtagtaaaaatttacatattttaatattacaatgttaactaataatgacaatttatcaag 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26 gtagtaaaaatttacatattttaatattacaatgttaactaataatgacaatttatcaag 85


Query: 86 aagttcaaaaatttgccaagggttatgacttaaatcaagatggcgtattaacttcacaag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 aagttcaaaaatttgccaagggttatgacttaaatcaagatggcgtattaacttcacaag 145


Query: 146 aaatatattattcacttctnnnnnnnntgaatggcaattcttatgaggcatcaaaagcaa 205
||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 146 aaatatattattcacttctaaaaaaaatgaatggcaattcttatgaggcatcaaaagcaa 205


Query: 206 ctggtgttttatgttcaacaattgatataaacaaagatggtaaattcagttatcatgaaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ctggtgttttatgttcaacaattgatataaacaaagatggtaaattcagttatcatgaaa 265


Query: 266 ttgctaaatattgtgctgacaatgcnnnnnnnctaattgaacaaaatgctgatattgctg 325
||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 266 ttgctaaatattgtgctgacaatgcaaaaaaactaattgaacaaaatgctgatattgctg 325


Query: 326 cattggctgatgttgaagcttttttattaagatttgataaagataaggatagaaaattaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cattggctgatgttgaagcttttttattaagatttgataaagataaggatagaaaattaa 385


Query: 386 acaaaacagaatttgttgaatacttcaaaggaggaacagataccccatactctgatcgtg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acaaaacagaatttgttgaatacttcaaaggaggaacagataccccatactctgatcgtg 445


Query: 446 attatgttcttaaaattattgatttggataaagatggatgtgtttccgcaaatgaattac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 attatgttcttaaaattattgatttggataaagatggatgtgtttccgcaaatgaattac 505


Query: 506 aagaatggttcnnnnnnnnnnngaattgattacgcaacaatgctttctgcaagaggtcca 565
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aagaatggttcaaaaaaaaaaagaattgattacgcaacaatgctttctgcaagaggtcca 565


Query: 566 aattgttaaattctcttgggacataataccacattaatcttattttttaaggttttt 622
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aattgttaaattctcttgggacataataccacattaatcttattttttaaggttttt 622


Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus


Query: 731 aataaatattaatatcgtaatagtaatttgatgt 764
||||||||||||||||||||||||||||||||||
Sbjct: 731 aataaatattaatatcgtaatagtaatttgatgt 764


>Contig-U12436-1 (Contig-U12436-1Q) /CSM_Contig/Contig-U12436-1Q.Seq.d
Length = 1371

Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 348 tttattaagatttgataaagataa 371
||||||||||||||||||||||||
Sbjct: 1252 tttattaagatttgataaagataa 1275


>Contig-U01598-1 (Contig-U01598-1Q) /CSM_Contig/Contig-U01598-1Q.Seq.d
Length = 1877

Score = 38.2 bits (19), Expect = 0.014
Identities = 22/23 (95%)
Strand = Plus / Minus


Query: 32 aaaatttacatattttaatatta 54
|||||||||||||||||| ||||
Sbjct: 465 aaaatttacatattttaaaatta 443


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9111
Number of Sequences: 6905
Number of extensions: 9111
Number of successful extensions: 858
Number of sequences better than 10.0: 89
length of query: 785
length of database: 5,674,871
effective HSP length: 16
effective length of query: 769
effective length of database: 5,564,391
effective search space: 4279016679
effective search space used: 4279016679
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 9
Homology vs DNA
Query= Contig-U13413-1 (Contig-U13413-1Q) /CSM_Contig/Contig-U13413-1Q.Seq.d
(785 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AF076972) Dictyostelium discoideum calcium-binding protein ... 434 0.0 5
(BJ397199) Dictyostelium discoideum cDNA clone:dds45n07, 5' ... 434 0.0 4
(BJ331706) Dictyostelium discoideum cDNA clone:dda36b19, 5' ... 434 0.0 4
(AU060745) Dictyostelium discoideum slug cDNA, clone SLB331. 434 0.0 5
(C90205) Dictyostelium discoideum slug cDNA, clone SSI246. 426 0.0 5
(C24671) Dictyostelium discoideum slug cDNA, clone SL-X075. 321 0.0 5
(AU033831) Dictyostelium discoideum slug cDNA, clone SLB493. 434 0.0 5
(C92092) Dictyostelium discoideum slug cDNA, clone SSD410. 434 0.0 5
(AU033775) Dictyostelium discoideum slug cDNA, clone SLB425. 434 0.0 4
(AU034308) Dictyostelium discoideum slug cDNA, clone SLC556. 434 0.0 4
(AU033479) Dictyostelium discoideum slug cDNA, clone SLA876. 434 0.0 4
(AU033724) Dictyostelium discoideum slug cDNA, clone SLB362. 426 0.0 4
(AU037431) Dictyostelium discoideum slug cDNA, clone SSD632. 410 0.0 4
(AU052443) Dictyostelium discoideum slug cDNA, clone SLD326. 434 0.0 3
(C90136) Dictyostelium discoideum slug cDNA, clone SSI132. 434 0.0 3
(AU052211) Dictyostelium discoideum slug cDNA, clone SLA250. 434 0.0 3
(AU040087) Dictyostelium discoideum slug cDNA, clone SLA389. 434 e-179 3
(AU061126) Dictyostelium discoideum slug cDNA, clone SLD295. 234 e-160 4
(C25543) Dictyostelium discoideum slug cDNA, clone SLA239. 426 e-159 6
(AU061133) Dictyostelium discoideum slug cDNA, clone SLD326. 234 e-156 4
(AU061225) Dictyostelium discoideum slug cDNA, clone SLD566. 234 e-151 4
(AU061770) Dictyostelium discoideum slug cDNA, clone SLF816. 234 e-148 4
(AU033859) Dictyostelium discoideum slug cDNA, clone SLB530. 434 e-146 3
(AU033847) Dictyostelium discoideum slug cDNA, clone SLB516. 426 e-143 3
(C25546) Dictyostelium discoideum slug cDNA, clone SLA245. 434 e-143 3
(AU033894) Dictyostelium discoideum slug cDNA, clone SLB579. 418 e-136 3
(BJ332165) Dictyostelium discoideum cDNA clone:dda38o03, 5' ... 163 e-135 9
(C25529) Dictyostelium discoideum slug cDNA, clone SLA172. 418 e-135 3
(BJ349955) Dictyostelium discoideum cDNA clone:dda38o03, 3' ... 165 e-134 9
(AU061168) Dictyostelium discoideum slug cDNA, clone SLD458. 234 e-133 4
(C89653) Dictyostelium discoideum slug cDNA, clone SSA505. 176 e-133 7
(AU038815) Dictyostelium discoideum slug cDNA, clone SSL518. 176 e-132 7
(AB070448) Dictyostelium discoideum cbpF mRNA for calcium bi... 176 e-132 7
(C94440) Dictyostelium discoideum slug cDNA, clone SSK806. 176 e-132 7
(C91972) Dictyostelium discoideum slug cDNA, clone SSC631. 176 e-127 6
(C91473) Dictyostelium discoideum slug cDNA, clone SSK322. 163 e-126 5
(AU061151) Dictyostelium discoideum slug cDNA, clone SLD394. 234 e-125 3
(C92744) Dictyostelium discoideum slug cDNA, clone SSF182. 400 e-124 4
(C90717) Dictyostelium discoideum slug cDNA, clone SSJ865. 176 e-124 6
(C92503) Dictyostelium discoideum slug cDNA, clone SSE859. 151 e-123 6
(C91454) Dictyostelium discoideum slug cDNA, clone SSK301. 176 e-123 4
(C90118) Dictyostelium discoideum slug cDNA, clone SSI112. 176 e-123 4
(C91322) Dictyostelium discoideum slug cDNA, clone SSK474. 176 e-123 4
(C92348) Dictyostelium discoideum slug cDNA, clone SSD391. 176 e-123 4
(C25640) Dictyostelium discoideum slug cDNA, clone SSA837. 176 e-123 4
(C25523) Dictyostelium discoideum slug cDNA, clone SLA154. 426 e-122 3
(C93180) Dictyostelium discoideum slug cDNA, clone SSM746. 176 e-120 4
(BJ394451) Dictyostelium discoideum cDNA clone:dds35n04, 5' ... 151 e-117 7
(AB070449) Dictyostelium discoideum cbpG mRNA for calcium bi... 151 e-116 6
(C91989) Dictyostelium discoideum slug cDNA, clone SSC684. 151 e-116 6
(BJ352196) Dictyostelium discoideum cDNA clone:dda45p24, 3' ... 151 e-116 6
(BJ348035) Dictyostelium discoideum cDNA clone:dda32a01, 3' ... 176 e-115 7
(C92433) Dictyostelium discoideum slug cDNA, clone SSE540. 176 e-114 4
(C90639) Dictyostelium discoideum slug cDNA, clone SSI258. 151 e-113 6
(C91293) Dictyostelium discoideum slug cDNA, clone SSK215. 151 e-112 4
(AU038996) Dictyostelium discoideum slug cDNA, clone SSM254. 151 e-112 4
(C93295) Dictyostelium discoideum slug cDNA, clone SSM536. 151 e-112 4
(AU037477) Dictyostelium discoideum slug cDNA, clone SSD683. 151 e-112 4
(C90733) Dictyostelium discoideum slug cDNA, clone SSJ883. 151 e-112 4
(C92426) Dictyostelium discoideum slug cDNA, clone SSE532. 151 e-112 4
(AU038026) Dictyostelium discoideum slug cDNA, clone SSH174. 151 e-112 4
(C93017) Dictyostelium discoideum slug cDNA, clone SSF479. 151 e-112 4
(AU038961) Dictyostelium discoideum slug cDNA, clone SSM207. 151 e-112 4
(AU037845) Dictyostelium discoideum slug cDNA, clone SSE363. 151 e-112 4
(AU038203) Dictyostelium discoideum slug cDNA, clone SSH412. 151 e-112 4
(AU038204) Dictyostelium discoideum slug cDNA, clone SSH413. 151 e-112 4
(C93959) Dictyostelium discoideum slug cDNA, clone SSC858. 151 e-112 4
(C24625) Dictyostelium discoideum slug cDNA, clone SL-X023. 147 e-111 6
(C93024) Dictyostelium discoideum slug cDNA, clone SSF489. 151 e-111 4
(AU052132) Dictyostelium discoideum slug cDNA, clone SLA585. 398 e-109 2
(C92286) Dictyostelium discoideum slug cDNA, clone SSD345. 151 e-109 4
(AU037596) Dictyostelium discoideum slug cDNA, clone SSD832. 151 e-109 4
(AU038076) Dictyostelium discoideum slug cDNA, clone SSH239. 151 e-109 4
(BJ406415) Dictyostelium discoideum cDNA clone:dds35n04, 3' ... 151 e-108 7
(C89674) Dictyostelium discoideum slug cDNA, clone SSA591. 151 e-106 4
(C91486) Dictyostelium discoideum slug cDNA, clone SSK339. 151 e-106 4
(AU052213) Dictyostelium discoideum slug cDNA, clone SLA255. 387 e-106 2
(BJ330560) Dictyostelium discoideum cDNA clone:dda32a01, 5' ... 176 e-102 6
(BJ325340) Dictyostelium discoideum cDNA clone:dda13n21, 5' ... 172 e-101 6
(BJ323985) Dictyostelium discoideum cDNA clone:dda4p04, 5' e... 141 e-101 7
(AU051806) Dictyostelium discoideum slug cDNA, clone SSA282. 151 e-100 4
(C92367) Dictyostelium discoideum slug cDNA, clone SSE656. 151 e-100 4
(AU036951) Dictyostelium discoideum slug cDNA, clone SSB863. 139 e-100 5
(BJ358033) Dictyostelium discoideum cDNA clone:dda65e17, 3' ... 151 2e-98 5
(AU037086) Dictyostelium discoideum slug cDNA, clone SSB409. 151 3e-90 5
(AU061255) Dictyostelium discoideum slug cDNA, clone SLD627. 178 3e-88 3
(AU038929) Dictyostelium discoideum slug cDNA, clone SSM154. 151 1e-84 3
(AU038738) Dictyostelium discoideum slug cDNA, clone SSL419. 151 1e-84 3
(C93210) Dictyostelium discoideum slug cDNA, clone SSM829. 141 2e-79 3
(AU033817) Dictyostelium discoideum slug cDNA, clone SLB477. 278 2e-73 2
(C91459) Dictyostelium discoideum slug cDNA, clone SSK307. 141 1e-71 3
(C93255) Dictyostelium discoideum slug cDNA, clone SSM881. 135 2e-69 3
(AU061320) Dictyostelium discoideum slug cDNA, clone SLD751. 151 2e-66 3
(AU052133) Dictyostelium discoideum slug cDNA, clone SLA590. 252 7e-66 2
(C90127) Dictyostelium discoideum slug cDNA, clone SSI122. 133 3e-65 3
(AU052595) Dictyostelium discoideum slug cDNA, clone SLD566. 210 2e-53 2
(AU053148) Dictyostelium discoideum slug cDNA, clone SLF816. 208 7e-53 2
(AU052548) Dictyostelium discoideum slug cDNA, clone SLD507. 194 1e-48 2
(C92592) Dictyostelium discoideum slug cDNA, clone SSF162. 123 4e-48 2
(AU038789) Dictyostelium discoideum slug cDNA, clone SSL482. 141 3e-45 2

>(AF076972) Dictyostelium discoideum calcium-binding protein mRNA,
complete cds.
Length = 610

Score = 434 bits (219), Expect(5) = 0.0
Identities = 219/219 (100%)
Strand = Plus / Plus


Query: 298 ctaattgaacaaaatgctgatattgctgcattggctgatgttgaagcttttttattaaga 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ctaattgaacaaaatgctgatattgctgcattggctgatgttgaagcttttttattaaga 353


Query: 358 tttgataaagataaggatagaaaattaaacaaaacagaatttgttgaatacttcaaagga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tttgataaagataaggatagaaaattaaacaaaacagaatttgttgaatacttcaaagga 413


Query: 418 ggaacagataccccatactctgatcgtgattatgttcttaaaattattgatttggataaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ggaacagataccccatactctgatcgtgattatgttcttaaaattattgatttggataaa 473


Query: 478 gatggatgtgtttccgcaaatgaattacaagaatggttc 516
|||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gatggatgtgtttccgcaaatgaattacaagaatggttc 512

Score = 234 bits (118), Expect(5) = 0.0
Identities = 118/118 (100%)
Strand = Plus / Plus


Query: 173 tgaatggcaattcttatgaggcatcaaaagcaactggtgttttatgttcaacaattgata 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tgaatggcaattcttatgaggcatcaaaagcaactggtgttttatgttcaacaattgata 228


Query: 233 taaacaaagatggtaaattcagttatcatgaaattgctaaatattgtgctgacaatgc 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 taaacaaagatggtaaattcagttatcatgaaattgctaaatattgtgctgacaatgc 286

Score = 178 bits (90), Expect(5) = 0.0
Identities = 90/90 (100%)
Strand = Plus / Plus


Query: 75 aatttatcaagaagttcaaaaatttgccaagggttatgacttaaatcaagatggcgtatt 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 aatttatcaagaagttcaaaaatttgccaagggttatgacttaaatcaagatggcgtatt 130


Query: 135 aacttcacaagaaatatattattcacttct 164
||||||||||||||||||||||||||||||
Sbjct: 131 aacttcacaagaaatatattattcacttct 160

Score = 95.6 bits (48), Expect(5) = 0.0
Identities = 48/48 (100%)
Strand = Plus / Plus


Query: 26 gtagtaaaaatttacatattttaatattacaatgttaactaataatga 73
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 gtagtaaaaatttacatattttaatattacaatgttaactaataatga 70

Score = 36.2 bits (18), Expect(5) = 0.0
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 580 cttgggacataataccac 597
||||||||||||||||||
Sbjct: 559 cttgggacataataccac 576

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 752,927,554
Number of extensions: 46026386
Number of successful extensions: 3782231
Number of sequences better than 10.0: 192
Length of query: 785
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 761
Effective length of database: 97,308,875,965
Effective search space: 74052054609365
Effective search space used: 74052054609365
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 7
Homology vs Protein
Query= Contig-U13413-1 (Contig-U13413-1Q) /CSM_Contig/Contig-U13413-1Q.Seq.d
(785 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54QT7) RecName: Full=Calcium-binding protein C; AltName: Full=... 306 4e-82
(Q54QT9) RecName: Full=Calcium-binding protein F; AltName: Full=... 239 2e-66
(Q54QU0) RecName: Full=Calcium-binding protein F-like; AltName: ... 233 2e-65
(Q966Q9) RecName: Full=Calcium-binding protein H; AltName: Full=... 63 9e-09
(P54653) RecName: Full=Calcium-binding protein 2; &S62881(S6288... 58 3e-07
AL359258_2(AL359258|pid:none) Human DNA sequence from clone RP11... 49 2e-04
FN357401_23(FN357401|pid:none) Schistosoma mansoni genome sequen... 48 4e-04
AF106590_2(AF106590|pid:none) Caenorhabditis elegans cosmid F08B... 46 0.001
T33849(T33849)hypothetical protein F08B6.3 - Caenorhabditis eleg... 46 0.001
CR382133_452(CR382133|pid:none) Debaryomyces hansenii strain CBS... 46 0.002
(O18757) RecName: Full=Calcium-binding mitochondrial carrier pro... 45 0.002
(Q6NUK1) RecName: Full=Calcium-binding mitochondrial carrier pro... 45 0.002
AK316506_1(AK316506|pid:none) Homo sapiens cDNA, FLJ79405 comple... 45 0.002
EU617320_1(EU617320|pid:none) Sus scrofa small calcium-binding m... 45 0.003
CR940353_624(CR940353|pid:none) Theileria annulata strain Ankara... 44 0.005
BC068561_1(BC068561|pid:none) Homo sapiens solute carrier family... 44 0.006
AK304165_1(AK304165|pid:none) Homo sapiens cDNA FLJ50039 complet... 44 0.006
(Q966R0) RecName: Full=Calcium-binding protein I; AltName: Full=... 44 0.006
BC055369_1(BC055369|pid:none) Mus musculus solute carrier family... 44 0.008
(P41044) RecName: Full=Calbindin-32; &AE013599_2523(AE013599|pi... 44 0.008
EF147058_1(EF147058|pid:none) Populus trichocarpa clone WS01226_... 42 0.017
FM992689_862(FM992689|pid:none) Candida dubliniensis CD36 chromo... 42 0.022
AY466386_1(AY466386|pid:none) Cryptosporidium parvum calcium-dep... 42 0.022
AC135595_30(AC135595|pid:none) Oryza sativa chromosome 3 BAC OSJ... 42 0.029
AM910991_58(AM910991|pid:none) Plasmodium knowlesi strain H chro... 41 0.038
FN357341_31(FN357341|pid:none) Schistosoma mansoni genome sequen... 41 0.038
M84155_1(M84155|pid:none) Entamoeba histolytica calcium-binding ... 41 0.050
(P38505) RecName: Full=Calcium-binding protein; Short=C... 41 0.050
EU968786_1(EU968786|pid:none) Zea mays clone 324139 hypothetical... 40 0.065
CU640366_1300(CU640366|pid:none) Podospora anserina genomic DNA ... 40 0.065
BC134711_1(BC134711|pid:none) Bos taurus calmodulin-like 5, mRNA... 40 0.085
(Q9NZT1) RecName: Full=Calmodulin-like protein 5; AltName: Full=... 40 0.085
CP000498_405(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 40 0.085
AF172852_1(AF172852|pid:none) Homo sapiens calmodulin-like skin ... 40 0.11
AY466387_1(AY466387|pid:none) Cryptosporidium parvum calcium-dep... 40 0.11
AL844509_371(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 39 0.14
BT037517_1(BT037517|pid:none) Zea mays full-length cDNA clone ZM... 39 0.14
(Q9C8Y1) RecName: Full=Probable calcium-binding protein CML23; A... 39 0.14
BT065840_1(BT065840|pid:none) Zea mays full-length cDNA clone ZM... 39 0.14
BT035787_1(BT035787|pid:none) Zea mays full-length cDNA clone ZM... 39 0.19
EU955654_1(EU955654|pid:none) Zea mays clone 1541128 calcium-dep... 39 0.19
FB334806_1(FB334806|pid:none) Sequence 2332 from Patent WO200711... 39 0.19
FB924853_1(FB924853|pid:none) Sequence 144126 from Patent WO2008... 39 0.19
T15849(T15849) hypothetical protein C56C10.9 - Caenorhabditis el... 39 0.19
(Q7T0U6) RecName: Full=Calcium-binding mitochondrial carrier pro... 39 0.19
BC039172_1(BC039172|pid:none) Homo sapiens calmodulin-like 5, mR... 39 0.19
CP001056_2503(CP001056|pid:none) Clostridium botulinum B str. Ek... 39 0.25
AF034089_1(AF034089|pid:none) Neurospora crassa calcineurin subu... 39 0.25
EU181179_1(EU181179|pid:none) Triticum aestivum calcium-dependen... 39 0.25
(P87072) RecName: Full=Calcineurin subunit B; AltName: Full=Prot... 39 0.25
T47245(T47245) calcineurin regulatory chain [imported] - Neurosp... 39 0.25
BC053760_1(BC053760|pid:none) Xenopus laevis cardiac troponin C,... 38 0.32
EU050677_1(EU050677|pid:none) Physcomitrella patens calcium-depe... 38 0.32
FADOAA(S00103;A29006) alpha-actinin - slime mold (Dictyostelium ... 38 0.32
(P09485) RecName: Full=Calcium-binding protein LPS1-alpha; 38 0.32
BT082577_1(BT082577|pid:none) Anoplopoma fimbria clone afim-evh-... 38 0.32
AM910994_159(AM910994|pid:none) Plasmodium knowlesi strain H chr... 38 0.32
T16357(T16357)hypothetical protein F43C9.2 - Caenorhabditis eleg... 38 0.32
AK222744_1(AK222744|pid:none) Homo sapiens mRNA for calmodulin-l... 38 0.32
FN359261_2(FN359261|pid:none) Schistosoma mansoni genome sequenc... 38 0.32
AF020769_1(AF020769|pid:none) Homo sapiens cardiac ventricular t... 38 0.42
AF013802_1(AF013802|pid:none) Pinus taeda calcium binding protei... 38 0.42
CP001141_62(CP001141|pid:none) Phaeodactylum tricornutum CCAP 10... 38 0.42
EF148530_1(EF148530|pid:none) Populus trichocarpa x Populus delt... 38 0.42
(O23184) RecName: Full=Calcium-binding protein CML19; AltName: F... 37 0.55
(Q757B7) RecName: Full=Calcineurin subunit B; AltName: Full=Prot... 37 0.55
(Q9HDE1) RecName: Full=Calcineurin subunit B; AltName: Full=Prot... 37 0.55
AK221718_1(AK221718|pid:none) Arabidopsis thaliana mRNA for calc... 37 0.72
(Q38873) RecName: Full=Calcium-dependent protein kinase 7; ... 37 0.72
(P25070) RecName: Full=Calcium-binding protein CML24; AltName: F... 37 0.72
EF469732_1(EF469732|pid:none) Setosphaeria turcica calcineurin B... 37 0.72
EU050664_1(EU050664|pid:none) Physcomitrella patens calcium-depe... 37 0.72
AY086644_1(AY086644|pid:none) Arabidopsis thaliana clone 26540 m... 37 0.72
AF145386_1(AF145386|pid:none) Phaseolus vulgaris hypersensitive ... 37 0.72
(Q0VFG3) RecName: Full=Secretagogin; &BC118839_1(BC118839|pid:n... 37 0.72
BC123245_1(BC123245|pid:none) Xenopus laevis reticulocalbin 1, m... 37 0.72
AK003648_1(AK003648|pid:none) Mus musculus 18-day embryo whole b... 37 0.94
EU964682_1(EU964682|pid:none) Zea mays clone 280810 hypothetical... 37 0.94
FB334828_1(FB334828|pid:none) Sequence 2354 from Patent WO200711... 37 0.94
A40394(A40394;B40394)spec-related protein LpS1-beta long splice ... 37 0.94
BT083092_1(BT083092|pid:none) Anoplopoma fimbria clone afim-evh-... 37 0.94
AL133248_13(AL133248|pid:none) Arabidopsis thaliana DNA chromoso... 37 0.94
(Q6NLQ6) RecName: Full=Calcium-dependent protein kinase 32; ... 37 0.94
FN359261_3(FN359261|pid:none) Schistosoma mansoni genome sequenc... 37 0.94
AY281129_1(AY281129|pid:none) Oncorhynchus mykiss troponin C mRN... 36 1.2
AF434188_1(AF434188|pid:none) Danio rerio cardiac troponin C mRN... 36 1.2
(Q9UU93) RecName: Full=Calcineurin subunit B; AltName: Full=Prot... 36 1.2
AF276999_1(AF276999|pid:none) Funaria hygrometrica calcium-depen... 36 1.2
BC043993_1(BC043993|pid:none) Xenopus laevis hypothetical protei... 36 1.2
BC059467_1(BC059467|pid:none) Danio rerio calbindin 2, (calretin... 36 1.2
AM920435_1189(AM920435|pid:none) Penicillium chrysogenum Wiscons... 36 1.2
BT082138_1(BT082138|pid:none) Anoplopoma fimbria clone afim-evh-... 36 1.2
AJ276885_1(AJ276885|pid:none) Schistosoma mansoni mRNA for calci... 36 1.2
CP000551_1019(CP000551|pid:none) Prochlorococcus marinus str. AS... 36 1.6
AP003866_24(AP003866|pid:none) Oryza sativa Japonica Group genom... 36 1.6
AC148348_15(AC148348|pid:none) Medicago truncatula clone mth2-28... 36 1.6
BT004566_1(BT004566|pid:none) Arabidopsis thaliana At1g18890 gen... 36 1.6
D21805_1(D21805|pid:none) Arabidopsis thaliana mRNA for calcium-... 36 1.6
AY515693_1(AY515693|pid:none) Entamoeba histolytica calcium bind... 36 1.6
EF410079_1(EF410079|pid:none) Ailuropoda melanoleuca troponin C ... 36 1.6
JW0064(JW0064)slow cardiac troponin C - African clawed frog 36 1.6
AF434189_1(AF434189|pid:none) Polypterus senegalus cardiac tropo... 35 2.1
AJ297597_1(AJ297597|pid:none) Dictyostelium discoideum mRNA for ... 35 2.1
BT078078_1(BT078078|pid:none) Lepeophtheirus salmonis Pacific fo... 35 2.1
AY572538_13(AY572538|pid:none) Aleurochiton aceris mitochondrion... 35 2.1
T22708(T22708)hypothetical protein F55C10.1 - Caenorhabditis ele... 35 2.1
AB070447_1(AB070447|pid:none) Dictyostelium discoideum cbpE mRNA... 35 2.1
(Q54RF4) RecName: Full=Calcium-binding protein 4a; 35 2.1
(Q66L49) RecName: Full=Calcium-binding mitochondrial carrier pro... 35 2.1
AF435451_1(AF435451|pid:none) Nicotiana tabacum calcium-dependen... 35 2.1
(Q7ZYD5) RecName: Full=Calcium-binding mitochondrial carrier pro... 35 2.7
AM441970_1(AM441970|pid:none) Vitis vinifera contig VV78X215537.... 35 2.7
DQ098651_1(DQ098651|pid:none) Isatis tinctoria putative calcium-... 35 2.7
AP007164_83(AP007164|pid:none) Aspergillus oryzae RIB40 genomic ... 35 2.7
(Q38869) RecName: Full=Calcium-dependent protein kinase 4; ... 35 2.7
(Q869S9) RecName: Full=Calcium-binding protein E; AltName: Full=... 35 3.6
AF287251_1(AF287251|pid:none) Bombyx mori calcineurin B (cnb) mR... 35 3.6
FB335053_1(FB335053|pid:none) Sequence 2579 from Patent WO200711... 35 3.6
(Q62703) RecName: Full=Reticulocalbin-2; AltName: Full=Calcium-b... 35 3.6
(A8K855) RecName: Full=EF-hand calcium-binding domain-containing... 35 3.6
(Q6CGE6) RecName: Full=Calcineurin subunit B; AltName: Full=Prot... 35 3.6
AY085837_1(AY085837|pid:none) Arabidopsis thaliana clone 18901 m... 35 3.6
BC064883_1(BC064883|pid:none) Xenopus tropicalis calumenin, mRNA... 35 3.6
CP001104_810(CP001104|pid:none) Eubacterium eligens ATCC 27750, ... 35 3.6
AL953864_8(AL953864|pid:none) Zebrafish DNA sequence from clone ... 35 3.6
(Q5SND2) RecName: Full=Probable calcium-binding protein CML30; A... 35 3.6
AK169765_1(AK169765|pid:none) Mus musculus 2 days neonate thymus... 35 3.6
AK229840_1(AK229840|pid:none) Arabidopsis thaliana mRNA for calc... 35 3.6
(Q9D3N2) RecName: Full=EF-hand calcium-binding domain-containing... 35 3.6
EU971077_1(EU971077|pid:none) Zea mays clone 357049 calcium-depe... 35 3.6
(Q9FKW4) RecName: Full=Calcium-dependent protein kinase 28; ... 35 3.6
FN317437_1(FN317437|pid:none) Schistosoma japonicum isolate Anhu... 35 3.6
CQ891243_1(CQ891243|pid:none) Sequence 9 from Patent WO2004087902. 35 3.6
AK038735_1(AK038735|pid:none) Mus musculus adult male hypothalam... 35 3.6
AK030381_1(AK030381|pid:none) Mus musculus adult male pituitary ... 35 3.6
CP000084_29(CP000084|pid:none) Candidatus Pelagibacter ubique HT... 35 3.6
EF144933_1(EF144933|pid:none) Populus trichocarpa clone WS0111_A... 35 3.6
EU935858_1(EU935858|pid:none) Euglena gracilis calmodulin 2 mRNA... 34 4.7
CP000478_173(CP000478|pid:none) Syntrophobacter fumaroxidans MPO... 34 4.7
CP000113_2250(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 34 4.7
BC134456_1(BC134456|pid:none) Bos taurus reticulocalbin 1, EF-ha... 34 4.7
AY890768_1(AY890768|pid:none) Synthetic construct Homo sapiens c... 34 4.7
AB170304_1(AB170304|pid:none) Macaca fascicularis brain cDNA clo... 34 4.7
BC083305_1(BC083305|pid:none) Danio rerio calcium binding protei... 34 4.7
AK056338_1(AK056338|pid:none) Homo sapiens cDNA FLJ31776 fis, cl... 34 4.7
AY893859_1(AY893859|pid:none) Synthetic construct Homo sapiens c... 34 4.7
AK302679_1(AK302679|pid:none) Homo sapiens cDNA FLJ53462 complet... 34 4.7
U56245_1(U56245|pid:none) Drosophila melanogaster chromosome 2 c... 34 4.7
(Q64127) RecName: Full=Transcription intermediary factor 1-alpha... 34 4.7
AF434190_1(AF434190|pid:none) Tetraodon fluviatilis cardiac trop... 34 4.7
S78219_1(S78219|pid:none) nuclear protein TIF1 [mice, mRNA, 3951... 34 4.7
(Q24214) RecName: Full=Calcineurin subunit B type 2; AltName: Fu... 34 4.7
AF213970_1(AF213970|pid:none) Fasciola hepatica putative calcium... 34 4.7
AY894048_1(AY894048|pid:none) Synthetic construct Homo sapiens c... 34 4.7
(Q8VWY6) RecName: Full=Polcalcin Nic t 1; AltName: Full=Calcium-... 34 4.7
(O15164) RecName: Full=Transcription intermediary factor 1-alpha... 34 4.7
AL844506_117(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 34 4.7
T29357(T29357) 1-phosphatidylinositol-4,5-bisphosphate phosphodi... 34 4.7
AF119042_1(AF119042|pid:none) Homo sapiens transcriptional inter... 34 4.7
(Q5XH95) RecName: Full=Calcium-binding mitochondrial carrier pro... 34 4.7
AK133144_1(AK133144|pid:none) Mus musculus adult male testis cDN... 34 4.7
EU810305_1(EU810305|pid:none) Gymnochlora stellata calcineurin B... 34 4.7
(O43852) RecName: Full=Calumenin; AltName: Full=Crocalbin; AltNa... 34 4.7
CR548612_180(CR548612|pid:none) Paramecium tetraurelia macronucl... 34 4.7
FN357299_26(FN357299|pid:none) Schistosoma mansoni genome sequen... 34 4.7
BC098559_1(BC098559|pid:none) Danio rerio zgc:110594, mRNA (cDNA... 34 4.7
(Q39016) RecName: Full=Calcium-dependent protein kinase 11; ... 34 4.7
EZ000164_1(EZ000164|pid:none) TSA: Schistosoma japonicum SJCHGC0... 34 4.7
AM393458_1(AM393458|pid:none) Synthetic construct Homo sapiens c... 34 4.7
AY971376_1(AY971376|pid:none) Nicotiana tabacum calcium-dependen... 34 4.7
AE017347_77(AE017347|pid:none) Cryptococcus neoformans var. neof... 34 6.1
AM270333_12(AM270333|pid:none) Aspergillus niger contig An15c006... 34 6.1
AY814305_1(AY814305|pid:none) Schistosoma japonicum clone SJCHGC... 34 6.1
EF086708_1(EF086708|pid:none) Picea sitchensis clone WS02745_B11... 34 6.1
BT084582_1(BT084582|pid:none) Zea mays full-length cDNA clone ZM... 34 6.1
MCCKA(JU0276)calmodulin - yeast (Candida albicans) 34 6.1
FN357351_21(FN357351|pid:none) Schistosoma mansoni genome sequen... 34 6.1
AY293058_1(AY293058|pid:none) Mus musculus skin calmodulin-relat... 34 6.1
(Q2KJ39) RecName: Full=Reticulocalbin-3; Flags: Precursor; &BC1... 34 6.1
FN314169_1(FN314169|pid:none) Schistosoma japonicum isolate Anhu... 34 6.1
CU928174_563(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 34 6.1
CR382137_489(CR382137|pid:none) Debaryomyces hansenii strain CBS... 34 6.1
CU928168_647(CU928168|pid:none) Kluyveromyces thermotolerans str... 34 6.1
(Q9JM83) RecName: Full=Calmodulin-4; AltName: Full=Calcium-bindi... 34 6.1
CP000934_1167(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 34 6.1
DQ097724_1(DQ097724|pid:none) Arachis hypogaea calcium-binding p... 34 6.1
A97405(A97405)hypothetical protein AGR_C_660 [imported] - Agroba... 33 8.0
(Q7RAH3) RecName: Full=Calcium-dependent protein kinase 1; ... 33 8.0
AE007869_365(AE007869|pid:none) Agrobacterium tumefaciens str. C... 33 8.0
BC033167_1(BC033167|pid:none) Homo sapiens calcium binding prote... 33 8.0
CP001107_1704(CP001107|pid:none) Eubacterium rectale ATCC 33656,... 33 8.0
CP001083_1468(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 33 8.0
AY314008_1(AY314008|pid:none) Mus musculus skin calmodulin-relat... 33 8.0
CR954207_275(CR954207|pid:none) Ostreococcus tauri strain OTTH05... 33 8.0
(P57796) RecName: Full=Calcium-binding protein 4; Short... 33 8.0
(O93434) RecName: Full=Reticulocalbin-1; Flags: Precursor; &AL0... 33 8.0
AY816069_1(AY816069|pid:none) Schistosoma japonicum clone SJCHGC... 33 8.0
S67765_1(S67765|pid:none) Drosophila melanogaster alpha-spectrin... 33 8.0
AM910991_101(AM910991|pid:none) Plasmodium knowlesi strain H chr... 33 8.0
AM412317_1439(AM412317|pid:none) Clostridium botulinum A str. AT... 33 8.0
CR548612_171(CR548612|pid:none) Paramecium tetraurelia macronucl... 33 8.0
CP000962_1538(CP000962|pid:none) Clostridium botulinum A3 str. L... 33 8.0
AY336971_1(AY336971|pid:none) Xenopus laevis protein phospatase ... 33 8.0
CP000111_1018(CP000111|pid:none) Prochlorococcus marinus str. MI... 33 8.0

>(Q54QT7) RecName: Full=Calcium-binding protein C; AltName:
Full=Calcium-binding protein 3;
&AF076972_1(AF076972|pid:none)
Length = 166

Score = 306 bits (785), Expect = 4e-82
Identities = 150/151 (99%), Positives = 151/151 (100%)
Frame = +1

Query: 76 IYQEVQKFAKGYDLNQDGVLTSQEIYYSLLKKMNGNSYEASKATGVLCSTIDINKDGKFS 255
IYQEVQKFAKGYDLNQDGVLTSQEIYYSLLKKMNGNSYEASKATGVLCSTIDINKDGKFS
Sbjct: 7 IYQEVQKFAKGYDLNQDGVLTSQEIYYSLLKKMNGNSYEASKATGVLCSTIDINKDGKFS 66

Query: 256 YHEIAKYCADNAKKLIEQNADIAALADVEAFLLRFDKDKDRKLNKTEFVEYFKGGTDTPY 435
YHEIAKYCADNAKKLIEQNADIAALADVEAFLLRFDKDKDRKLNKTEFVEYFKGGTDTPY
Sbjct: 67 YHEIAKYCADNAKKLIEQNADIAALADVEAFLLRFDKDKDRKLNKTEFVEYFKGGTDTPY 126

Query: 436 SDRDYVLKIIDLDKDGCVSANELQEWFKKKK 528
SDRDYVLKIIDLDKDGCVSANELQEWFKKK+
Sbjct: 127 SDRDYVLKIIDLDKDGCVSANELQEWFKKKR 157

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,032,637,743
Number of extensions: 18633061
Number of successful extensions: 50157
Number of sequences better than 10.0: 204
Number of HSP's gapped: 49937
Number of HSP's successfully gapped: 217
Length of query: 261
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 135
Effective length of database: 643,374,430
Effective search space: 86855548050
Effective search space used: 86855548050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.61 gvh: 0.30 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
20.0 %: mitochondrial
20.0 %: cytoplasmic
4.0 %: peroxisomal

>> prediction for Contig-U13413-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 27
SS (DIR, S) 60
SH (FL, L) 2
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0