Contig-U13413-1 |
Contig ID |
Contig-U13413-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
785 |
Chromosome number (1..6, M) |
- |
Chromosome length |
- |
Start point |
- |
End point |
- |
Strand (PLUS/MINUS) |
- |
Number of clones |
90 |
Number of EST |
97 |
Link to clone list |
U13413 |
List of clone(s) |
est1=SLK403F,-37,254 est2=SHF815E,-15,631 est3=AHC773F,1,525 est4=SHK731F,1,533 est5=SSJ723F,5,687 est6=SSL518Z,12,640 est7=SLK232F,13,273 est8=SSC631E,13,642 est9=SSC684E,13,697 est10=SSA815F,14,366 est11=SSA505Z,18,639 est12=SSA123F,20,608 est13=SSI258E,20,688 est14=SSK806E,21,640 est15=SSL582E,21,702 est16=SSK215Z,26,697 est17=SSI246E,29,611 est18=SLB331F,30,613 est19=SLD295F,30,367 est20=SLD326F,30,361 est21=SLD394F,30,294 est22=SLD458F,30,322 est23=SLD566F,30,351 est24=SLD627F,30,244 est25=SLD751F,30,208 est26=SLF816F,30,346 est27=SSA175F,30,589 est28=SSF171E,32,739 est29=SLB493Z,45,659 est30=SSD410Z,46,671 est31=SSF489Z,47,713 est32=SSD345Z,53,727 est33=SSH602F,56,371 est34=SSM254Z,56,714 est35=SLB425Z,67,659 est36=SSM536Z,67,697 est37=SSF123F,71,704 est38=SSD832Z,73,709 est39=SSH174Z,73,676 est40=SSA591Z,78,705 est41=SSK322Z,78,702 est42=SSJ865Z,79,639 est43=SSK301Z,80,680 est44=SSD683Z,81,695 est45=SLC556Z,84,659 est46=SSE532Z,85,690 est47=SSM207Z,91,682 est48=SSE859Z,93,786 est49=SLA876Z,95,659 est50=SSJ883Z,98,708 est51=SSF479Z,103,698 est52=SSD632Z,108,655 est53=SLB362Z,114,659 est54=SSK474Z,114,640 est55=SSE363Z,117,691 est56=SSA837Z,121,639 est57=SSH412Z,122,693 est58=SSI112E,128,660 est59=SSH413Z,131,693 est60=SLA389Z,142,659 est61=SSE540Z,154,714 est62=SLD326Z,163,659 est63=SLA250Z,170,659 est64=SSC858Z,171,718 est65=SSI132Z,171,670 est66=SSM746Z,173,711 est67=SSD391Z,177,696 est68=SSH239Z,190,687 est69=SSK339Z,214,715 est70=SSA282Z,225,726 est71=SSE656Z,226,691 est72=SLB530Z,233,659 est73=SLB516Z,236,659 est74=SLB579Z,240,659 est75=SLD344F,247,452 est76=SSF182E,262,664 est77=SSB409Z,276,781 est78=SSM154Z,278,698 est79=SSB863Z,286,698 est80=SSK307Z,288,727 est81=SSL419Z,292,697 est82=SLA255Z,295,659 est83=SLA585Z,309,659 est84=SSM829Z,313,684 est85=SSI122Z,352,726 est86=SSM881E,384,639 est87=SLA590Z,387,659 est88=SSA815Z,390,693 est89=SLD566Z,412,659 est90=SLF816Z,413,659 est91=SLD507Z,420,659 est92=SSL482Z,432,687 est93=SLD539Z,435,659 est94=SSF162E,459,680 est95=SLK403Z,497,691 est96=SHK731Z,513,645 est97=SLK232Z,542,696
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Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12. 9 |
Homology vs DNA |
Query= Contig-U13413-1 (Contig-U13413-1Q) /CSM_Contig/Contig-U13413-1Q.Seq.d (785 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AF076972) Dictyostelium discoideum calcium-binding protein ... 434 0.0 5 (BJ397199) Dictyostelium discoideum cDNA clone:dds45n07, 5' ... 434 0.0 4 (BJ331706) Dictyostelium discoideum cDNA clone:dda36b19, 5' ... 434 0.0 4 (AU060745) Dictyostelium discoideum slug cDNA, clone SLB331. 434 0.0 5 (C90205) Dictyostelium discoideum slug cDNA, clone SSI246. 426 0.0 5 (C24671) Dictyostelium discoideum slug cDNA, clone SL-X075. 321 0.0 5 (AU033831) Dictyostelium discoideum slug cDNA, clone SLB493. 434 0.0 5 (C92092) Dictyostelium discoideum slug cDNA, clone SSD410. 434 0.0 5 (AU033775) Dictyostelium discoideum slug cDNA, clone SLB425. 434 0.0 4 (AU034308) Dictyostelium discoideum slug cDNA, clone SLC556. 434 0.0 4 (AU033479) Dictyostelium discoideum slug cDNA, clone SLA876. 434 0.0 4 (AU033724) Dictyostelium discoideum slug cDNA, clone SLB362. 426 0.0 4 (AU037431) Dictyostelium discoideum slug cDNA, clone SSD632. 410 0.0 4 (AU052443) Dictyostelium discoideum slug cDNA, clone SLD326. 434 0.0 3 (C90136) Dictyostelium discoideum slug cDNA, clone SSI132. 434 0.0 3 (AU052211) Dictyostelium discoideum slug cDNA, clone SLA250. 434 0.0 3 (AU040087) Dictyostelium discoideum slug cDNA, clone SLA389. 434 e-179 3 (AU061126) Dictyostelium discoideum slug cDNA, clone SLD295. 234 e-160 4 (C25543) Dictyostelium discoideum slug cDNA, clone SLA239. 426 e-159 6 (AU061133) Dictyostelium discoideum slug cDNA, clone SLD326. 234 e-156 4 (AU061225) Dictyostelium discoideum slug cDNA, clone SLD566. 234 e-151 4 (AU061770) Dictyostelium discoideum slug cDNA, clone SLF816. 234 e-148 4 (AU033859) Dictyostelium discoideum slug cDNA, clone SLB530. 434 e-146 3 (AU033847) Dictyostelium discoideum slug cDNA, clone SLB516. 426 e-143 3 (C25546) Dictyostelium discoideum slug cDNA, clone SLA245. 434 e-143 3 (AU033894) Dictyostelium discoideum slug cDNA, clone SLB579. 418 e-136 3 (BJ332165) Dictyostelium discoideum cDNA clone:dda38o03, 5' ... 163 e-135 9 (C25529) Dictyostelium discoideum slug cDNA, clone SLA172. 418 e-135 3 (BJ349955) Dictyostelium discoideum cDNA clone:dda38o03, 3' ... 165 e-134 9 (AU061168) Dictyostelium discoideum slug cDNA, clone SLD458. 234 e-133 4 (C89653) Dictyostelium discoideum slug cDNA, clone SSA505. 176 e-133 7 (AU038815) Dictyostelium discoideum slug cDNA, clone SSL518. 176 e-132 7 (AB070448) Dictyostelium discoideum cbpF mRNA for calcium bi... 176 e-132 7 (C94440) Dictyostelium discoideum slug cDNA, clone SSK806. 176 e-132 7 (C91972) Dictyostelium discoideum slug cDNA, clone SSC631. 176 e-127 6 (C91473) Dictyostelium discoideum slug cDNA, clone SSK322. 163 e-126 5 (AU061151) Dictyostelium discoideum slug cDNA, clone SLD394. 234 e-125 3 (C92744) Dictyostelium discoideum slug cDNA, clone SSF182. 400 e-124 4 (C90717) Dictyostelium discoideum slug cDNA, clone SSJ865. 176 e-124 6 (C92503) Dictyostelium discoideum slug cDNA, clone SSE859. 151 e-123 6 (C91454) Dictyostelium discoideum slug cDNA, clone SSK301. 176 e-123 4 (C90118) Dictyostelium discoideum slug cDNA, clone SSI112. 176 e-123 4 (C91322) Dictyostelium discoideum slug cDNA, clone SSK474. 176 e-123 4 (C92348) Dictyostelium discoideum slug cDNA, clone SSD391. 176 e-123 4 (C25640) Dictyostelium discoideum slug cDNA, clone SSA837. 176 e-123 4 (C25523) Dictyostelium discoideum slug cDNA, clone SLA154. 426 e-122 3 (C93180) Dictyostelium discoideum slug cDNA, clone SSM746. 176 e-120 4 (BJ394451) Dictyostelium discoideum cDNA clone:dds35n04, 5' ... 151 e-117 7 (AB070449) Dictyostelium discoideum cbpG mRNA for calcium bi... 151 e-116 6 (C91989) Dictyostelium discoideum slug cDNA, clone SSC684. 151 e-116 6 (BJ352196) Dictyostelium discoideum cDNA clone:dda45p24, 3' ... 151 e-116 6 (BJ348035) Dictyostelium discoideum cDNA clone:dda32a01, 3' ... 176 e-115 7 (C92433) Dictyostelium discoideum slug cDNA, clone SSE540. 176 e-114 4 (C90639) Dictyostelium discoideum slug cDNA, clone SSI258. 151 e-113 6 (C91293) Dictyostelium discoideum slug cDNA, clone SSK215. 151 e-112 4 (AU038996) Dictyostelium discoideum slug cDNA, clone SSM254. 151 e-112 4 (C93295) Dictyostelium discoideum slug cDNA, clone SSM536. 151 e-112 4 (AU037477) Dictyostelium discoideum slug cDNA, clone SSD683. 151 e-112 4 (C90733) Dictyostelium discoideum slug cDNA, clone SSJ883. 151 e-112 4 (C92426) Dictyostelium discoideum slug cDNA, clone SSE532. 151 e-112 4 (AU038026) Dictyostelium discoideum slug cDNA, clone SSH174. 151 e-112 4 (C93017) Dictyostelium discoideum slug cDNA, clone SSF479. 151 e-112 4 (AU038961) Dictyostelium discoideum slug cDNA, clone SSM207. 151 e-112 4 (AU037845) Dictyostelium discoideum slug cDNA, clone SSE363. 151 e-112 4 (AU038203) Dictyostelium discoideum slug cDNA, clone SSH412. 151 e-112 4 (AU038204) Dictyostelium discoideum slug cDNA, clone SSH413. 151 e-112 4 (C93959) Dictyostelium discoideum slug cDNA, clone SSC858. 151 e-112 4 (C24625) Dictyostelium discoideum slug cDNA, clone SL-X023. 147 e-111 6 (C93024) Dictyostelium discoideum slug cDNA, clone SSF489. 151 e-111 4 (AU052132) Dictyostelium discoideum slug cDNA, clone SLA585. 398 e-109 2 (C92286) Dictyostelium discoideum slug cDNA, clone SSD345. 151 e-109 4 (AU037596) Dictyostelium discoideum slug cDNA, clone SSD832. 151 e-109 4 (AU038076) Dictyostelium discoideum slug cDNA, clone SSH239. 151 e-109 4 (BJ406415) Dictyostelium discoideum cDNA clone:dds35n04, 3' ... 151 e-108 7 (C89674) Dictyostelium discoideum slug cDNA, clone SSA591. 151 e-106 4 (C91486) Dictyostelium discoideum slug cDNA, clone SSK339. 151 e-106 4 (AU052213) Dictyostelium discoideum slug cDNA, clone SLA255. 387 e-106 2 (BJ330560) Dictyostelium discoideum cDNA clone:dda32a01, 5' ... 176 e-102 6 (BJ325340) Dictyostelium discoideum cDNA clone:dda13n21, 5' ... 172 e-101 6 (BJ323985) Dictyostelium discoideum cDNA clone:dda4p04, 5' e... 141 e-101 7 (AU051806) Dictyostelium discoideum slug cDNA, clone SSA282. 151 e-100 4 (C92367) Dictyostelium discoideum slug cDNA, clone SSE656. 151 e-100 4 (AU036951) Dictyostelium discoideum slug cDNA, clone SSB863. 139 e-100 5 (BJ358033) Dictyostelium discoideum cDNA clone:dda65e17, 3' ... 151 2e-98 5 (AU037086) Dictyostelium discoideum slug cDNA, clone SSB409. 151 3e-90 5 (AU061255) Dictyostelium discoideum slug cDNA, clone SLD627. 178 3e-88 3 (AU038929) Dictyostelium discoideum slug cDNA, clone SSM154. 151 1e-84 3 (AU038738) Dictyostelium discoideum slug cDNA, clone SSL419. 151 1e-84 3 (C93210) Dictyostelium discoideum slug cDNA, clone SSM829. 141 2e-79 3 (AU033817) Dictyostelium discoideum slug cDNA, clone SLB477. 278 2e-73 2 (C91459) Dictyostelium discoideum slug cDNA, clone SSK307. 141 1e-71 3 (C93255) Dictyostelium discoideum slug cDNA, clone SSM881. 135 2e-69 3 (AU061320) Dictyostelium discoideum slug cDNA, clone SLD751. 151 2e-66 3 (AU052133) Dictyostelium discoideum slug cDNA, clone SLA590. 252 7e-66 2 (C90127) Dictyostelium discoideum slug cDNA, clone SSI122. 133 3e-65 3 (AU052595) Dictyostelium discoideum slug cDNA, clone SLD566. 210 2e-53 2 (AU053148) Dictyostelium discoideum slug cDNA, clone SLF816. 208 7e-53 2 (AU052548) Dictyostelium discoideum slug cDNA, clone SLD507. 194 1e-48 2 (C92592) Dictyostelium discoideum slug cDNA, clone SSF162. 123 4e-48 2 (AU038789) Dictyostelium discoideum slug cDNA, clone SSL482. 141 3e-45 2
>(AF076972) Dictyostelium discoideum calcium-binding protein mRNA, complete cds. Length = 610
Score = 434 bits (219), Expect(5) = 0.0 Identities = 219/219 (100%) Strand = Plus / Plus
Query: 298 ctaattgaacaaaatgctgatattgctgcattggctgatgttgaagcttttttattaaga 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 294 ctaattgaacaaaatgctgatattgctgcattggctgatgttgaagcttttttattaaga 353
Query: 358 tttgataaagataaggatagaaaattaaacaaaacagaatttgttgaatacttcaaagga 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 354 tttgataaagataaggatagaaaattaaacaaaacagaatttgttgaatacttcaaagga 413
Query: 418 ggaacagataccccatactctgatcgtgattatgttcttaaaattattgatttggataaa 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 414 ggaacagataccccatactctgatcgtgattatgttcttaaaattattgatttggataaa 473
Query: 478 gatggatgtgtttccgcaaatgaattacaagaatggttc 516 ||||||||||||||||||||||||||||||||||||||| Sbjct: 474 gatggatgtgtttccgcaaatgaattacaagaatggttc 512
Score = 234 bits (118), Expect(5) = 0.0 Identities = 118/118 (100%) Strand = Plus / Plus
Query: 173 tgaatggcaattcttatgaggcatcaaaagcaactggtgttttatgttcaacaattgata 232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 169 tgaatggcaattcttatgaggcatcaaaagcaactggtgttttatgttcaacaattgata 228
Query: 233 taaacaaagatggtaaattcagttatcatgaaattgctaaatattgtgctgacaatgc 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 229 taaacaaagatggtaaattcagttatcatgaaattgctaaatattgtgctgacaatgc 286
Score = 178 bits (90), Expect(5) = 0.0 Identities = 90/90 (100%) Strand = Plus / Plus
Query: 75 aatttatcaagaagttcaaaaatttgccaagggttatgacttaaatcaagatggcgtatt 134 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71 aatttatcaagaagttcaaaaatttgccaagggttatgacttaaatcaagatggcgtatt 130
Query: 135 aacttcacaagaaatatattattcacttct 164 |||||||||||||||||||||||||||||| Sbjct: 131 aacttcacaagaaatatattattcacttct 160
Score = 95.6 bits (48), Expect(5) = 0.0 Identities = 48/48 (100%) Strand = Plus / Plus
Query: 26 gtagtaaaaatttacatattttaatattacaatgttaactaataatga 73 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23 gtagtaaaaatttacatattttaatattacaatgttaactaataatga 70
Score = 36.2 bits (18), Expect(5) = 0.0 Identities = 18/18 (100%) Strand = Plus / Plus
Query: 580 cttgggacataataccac 597 |||||||||||||||||| Sbjct: 559 cttgggacataataccac 576
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 752,927,554 Number of extensions: 46026386 Number of successful extensions: 3782231 Number of sequences better than 10.0: 192 Length of query: 785 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 761 Effective length of database: 97,308,875,965 Effective search space: 74052054609365 Effective search space used: 74052054609365 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 7 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
1 |
AF (FL, S) |
0 |
SL (DIR, L) |
27 |
SS (DIR, S) |
60 |
SH (FL, L) |
2 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |