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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13410-1
Contig ID Contig-U13410-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13410-1 (Contig-U13410-1Q) /CSM_Contig/Contig-U13410-1Q.Seq.d
CTTTTTTTTATCTCACTCTGTTCCATATAATTTTATATATATAATTAATA
ATGGATTTTAGTTCAATTGAACAAAATTTAAATAACTTTAAAAAGCTTGT
TGCTGGTAATTCAGATAAAGCACAAATTACACCAGTTTTAGTTCAATTAA
AATTAGCAGCAACAATTCATTTAGAAAAACCAACTTCTCTTTCAAATGTT
TCTGATAAAGTTAAAAAAGATTTAGTTTTAGCAAGAGAGATTTTAGAATT
AATTTCATTATATTCAATTAAAATTAAAGATATTGATTCATTTGAAAGAA
CATTTAATCAATTAAAGACATACTATTATGATTATAAATCAATTATTGCA
CCATCAACATTAGAATATCAAATTATTGGTTTGAATTTAATGAGATTATT
AGCAAAACATAAAACATCAGAATTCCATAGCGAAATTGAATTAATCGAAT
TTAATAATTTAGATAACTCATTCATTAAATTCCCATTATTGGTTGAAAAA
TCAATTACAGAGGGGTAGTTATAATAAAATTATTCAATCAAGATCTGGTG
TACCATCAGAATATTATCAAGTTTTCCTTGATATTTTAGCAGATTCAATA
AAGGAGGATATTGCAAATTGTAGTGAAAAATCATTTAAAACATTATCATT
AAAAGATGCAGAAAAAGTATTATTATTCAATGATAACAATCAATTCCAAC
AATACATTAAGGAAAGAAATTGGAAAGTTCAAGGTGATGTAATTCAATTT
GGAAATAATGATAATCAAACCGTTGTAATTCCATCTTTACAATTGAATCA
CCAAACTCTTCACTATGCCAAAGAACTTGAAAGAATTGTATAAATTAAAT
TAAATAAAAATAACAATA
Gap no gap
Contig length 868
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3614908
End point 3614038
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 3
Link to clone list U13410
List of clone(s) 

est1=VSG451E,1,817
est2=SSH136F,31,365
est3=VSE819Z,177,869
Translated Amino Acid sequence 
ffyltlfhiilyi*LIMDFSSIEQNLNNFKKLVAGNSDKAQITPVLVQLKLAATIHLEKP
TSLSNVSDKVKKDLVLAREILELISLYSIKIKDIDSFERTFNQLKTYYYDYKSIIAPSTL
EYQIIGLNLMRLLAKHKTSEFHSEIELIEFNNLDNSFIKFPLLVEKSITEG*l**nysik
iwctirilssfp*yfsrfnkggyckl**kii*niiikrcrksiiiq**qsiptih*gkkl
essr*cnsiwk***snrcnsiftiespnsslcqrt*kncin*ik*k*q
Translated Amino Acid sequence (All Frames) 
Frame A:
lffislcsi*fyiyn**wilvqlnki*itlkslllviqikhklhqf*fn*n*qqqfi*kn
qllfqmfliklkki*f*qerf*n*fhyiqlklkilihlkehlin*rhtimiinqllhhqh
*nikllv*i**dy*qnikhqnsiakln*snlii*ithslnshywlknqlqrgsynkiiqs
rsgvpseyyqvfldiladsikediancseksfktlslkdaekvllfndnnqfqqyikern
wkvqgdviqfgnndnqtvvipslqlnhqtlhyakeleriv*iklnknnn


Frame B:
fflshsvpynfiyiinngf*fn*tkfk*l*kaccw*fr*stnytsfssikissnnsfrkt
nfsfkcf**s*krfsfskrdfrinfiifn*n*ry*fi*kni*sikdill*l*inyctini
risnywfefneiiskt*nirip*rn*inri**fr*lih*ipiig*kinyrgvviiklfnq
dlvyhqniikfslif*qiq*rrilqivvknhlkhyh*kmqkkyyysmitinsnntlrkei
gkfkvm*fnleimiikpl*fhlyn*itklftmpknlkelykln*ikiti


Frame C:
ffyltlfhiilyi*LIMDFSSIEQNLNNFKKLVAGNSDKAQITPVLVQLKLAATIHLEKP
TSLSNVSDKVKKDLVLAREILELISLYSIKIKDIDSFERTFNQLKTYYYDYKSIIAPSTL
EYQIIGLNLMRLLAKHKTSEFHSEIELIEFNNLDNSFIKFPLLVEKSITEG*l**nysik
iwctirilssfp*yfsrfnkggyckl**kii*niiikrcrksiiiq**qsiptih*gkkl
essr*cnsiwk***snrcnsiftiespnsslcqrt*kncin*ik*k*q
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13410-1 (Contig-U13410-1Q)
/CSM_Contig/Contig-U13410-1Q.Seq.d
         (868 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13410-1 (Contig-U13410-1Q) /CSM_Contig/Conti...  1703  0.0
Contig-U10411-1 (Contig-U10411-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U11580-1 (Contig-U11580-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U14491-1 (Contig-U14491-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U10163-1 (Contig-U10163-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U05258-1 (Contig-U05258-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U14177-1 (Contig-U14177-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U13884-1 (Contig-U13884-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U11758-1 (Contig-U11758-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U09366-1 (Contig-U09366-1Q) /CSM_Contig/Conti...    40  0.004

>Contig-U13410-1 (Contig-U13410-1Q) /CSM_Contig/Contig-U13410-1Q.Seq.d
          Length = 868

 Score = 1703 bits (859), Expect = 0.0
 Identities = 859/859 (100%)
 Strand = Plus / Plus

                                                                       
Query: 10  atctcactctgttccatataattttatatatataattaataatggattttagttcaattg 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  atctcactctgttccatataattttatatatataattaataatggattttagttcaattg 69

                                                                       
Query: 70  aacaaaatttaaataactttaaaaagcttgttgctggtaattcagataaagcacaaatta 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aacaaaatttaaataactttaaaaagcttgttgctggtaattcagataaagcacaaatta 129

                                                                       
Query: 130 caccagttttagttcaattaaaattagcagcaacaattcatttagaaaaaccaacttctc 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 caccagttttagttcaattaaaattagcagcaacaattcatttagaaaaaccaacttctc 189

                                                                       
Query: 190 tttcaaatgtttctgataaagttaaaaaagatttagttttagcaagagagattttagaat 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tttcaaatgtttctgataaagttaaaaaagatttagttttagcaagagagattttagaat 249

                                                                       
Query: 250 taatttcattatattcaattaaaattaaagatattgattcatttgaaagaacatttaatc 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 taatttcattatattcaattaaaattaaagatattgattcatttgaaagaacatttaatc 309

                                                                       
Query: 310 aattaaagacatactattatgattataaatcaattattgcaccatcaacattagaatatc 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aattaaagacatactattatgattataaatcaattattgcaccatcaacattagaatatc 369

                                                                       
Query: 370 aaattattggtttgaatttaatgagattattagcaaaacataaaacatcagaattccata 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaattattggtttgaatttaatgagattattagcaaaacataaaacatcagaattccata 429

                                                                       
Query: 430 gcgaaattgaattaatcgaatttaataatttagataactcattcattaaattcccattat 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gcgaaattgaattaatcgaatttaataatttagataactcattcattaaattcccattat 489

                                                                       
Query: 490 tggttgaaaaatcaattacagaggggtagttataataaaattattcaatcaagatctggt 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tggttgaaaaatcaattacagaggggtagttataataaaattattcaatcaagatctggt 549

                                                                       
Query: 550 gtaccatcagaatattatcaagttttccttgatattttagcagattcaataaaggaggat 609
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gtaccatcagaatattatcaagttttccttgatattttagcagattcaataaaggaggat 609

                                                                       
Query: 610 attgcaaattgtagtgaaaaatcatttaaaacattatcattaaaagatgcagaaaaagta 669
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 attgcaaattgtagtgaaaaatcatttaaaacattatcattaaaagatgcagaaaaagta 669

                                                                       
Query: 670 ttattattcaatgataacaatcaattccaacaatacattaaggaaagaaattggaaagtt 729
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ttattattcaatgataacaatcaattccaacaatacattaaggaaagaaattggaaagtt 729

                                                                       
Query: 730 caaggtgatgtaattcaatttggaaataatgataatcaaaccgttgtaattccatcttta 789
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 caaggtgatgtaattcaatttggaaataatgataatcaaaccgttgtaattccatcttta 789

                                                                       
Query: 790 caattgaatcaccaaactcttcactatgccaaagaacttgaaagaattgtataaattaaa 849
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 caattgaatcaccaaactcttcactatgccaaagaacttgaaagaattgtataaattaaa 849

                              
Query: 850 ttaaataaaaataacaata 868
           |||||||||||||||||||
Sbjct: 850 ttaaataaaaataacaata 868


>Contig-U10411-1 (Contig-U10411-1Q) /CSM_Contig/Contig-U10411-1Q.Seq.d
          Length = 981

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 255 tcattatattcaattaaaattaaagat 281
           ||||||| |||||||||||||||||||
Sbjct: 811 tcattattttcaattaaaattaaagat 785


>Contig-U11580-1 (Contig-U11580-1Q) /CSM_Contig/Contig-U11580-1Q.Seq.d
          Length = 1028

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 833 gaattgtataaattaaattaaataaa 858
           |||||| |||||||||||||||||||
Sbjct: 993 gaattgaataaattaaattaaataaa 968


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,314
Number of Sequences: 6905
Number of extensions: 27314
Number of successful extensions: 4169
Number of sequences better than 10.0: 482
length of query: 868
length of database: 5,674,871
effective HSP length: 16
effective length of query: 852
effective length of database: 5,564,391
effective search space: 4740861132
effective search space used: 4740861132
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 9
Homology vs DNA 
Query= Contig-U13410-1 (Contig-U13410-1Q) /CSM_Contig/Contig-U13410-1Q.Seq.d
         (868 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU266501) Dictyostelium discoideum vegetative cDNA clone:VS...  1059   0.0    1
(AU266502) Dictyostelium discoideum vegetative cDNA clone:VS...   787   0.0    2
(AU263403) Dictyostelium discoideum vegetative cDNA clone:VS...   682   0.0    2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...   511   0.0    6
(AU037995) Dictyostelium discoideum slug cDNA, clone SSH136.      690   0.0    2
(M11429) Slime mold (D.discoideum) M4 protein, 5' end.            379   e-178  2
(AU073414) Dictyostelium discoideum slug cDNA, clone SSH136.      476   e-130  1
(V00194) Unknown gene of slime mold (D. discoideum).              180   e-124  4
(BJ404092) Dictyostelium discoideum cDNA clone:dds27f09, 3' ...   349   1e-91  1
(EC762507) PSE00006562 rw_mgpallid Polysphondylium pallidum ...    72   4e-08  1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   2e-06  19
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    38   3e-06  17
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         38   1e-05  15
(AL844509) Plasmodium falciparum chromosome 13.                    40   2e-05  10
(CR548612) Paramecium tetraurelia macronuclear largest chrom...    38   1e-04  21
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    42   1e-04  16
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    32   1e-04  13
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    38   1e-04  17
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    36   2e-04  16
(BD061520) Genome DNA of symbiotic bacteria of aphid.              34   3e-04  18
(AR409405) Sequence 1 from patent US 6632935.                      34   3e-04  18
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum...    34   3e-04  18
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   3e-04  15
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    36   4e-04  11
(AL844506) Plasmodium falciparum chromosome  7.                    42   4e-04  11
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    46   6e-04  12
(BX571857) Staphylococcus aureus strain MSSA476, complete ge...    34   6e-04  21
(BX248583) Blochmannia floridanus complete genome.                 34   7e-04  19
(BA000033) Staphylococcus aureus subsp. aureus MW2 DNA, comp...    34   7e-04  21
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    38   7e-04  19
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9...    34   7e-04  13
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    34   8e-04  14
(AE017308) Mycoplasma mobile 163K complete genome.                 38   8e-04  19
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    32   0.001  13
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   0.001  14
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont...    32   0.001  15
(CP000016) Candidatus Blochmannia pennsylvanicus str. BPEN, ...    34   0.002  21
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    32   0.002  11
(AE017332) Mycoplasma hyopneumoniae 232, complete genome.          36   0.002  23
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    44   0.002  19
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2...    38   0.002  13
(BX085194) Zebrafish DNA sequence from clone DKEY-242M13 in ...    36   0.002  7
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    32   0.003  15
(AL844507) Plasmodium falciparum chromosome 8.                     40   0.003  11
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   0.003  13
(CR383672) Zebrafish DNA sequence from clone DKEY-11P10 in l...    36   0.003  7
(AC117407) Homo sapiens chromosome 3 clone RP11-30F1, *** SE...    44   0.003  8
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)...    40   0.004  20
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s...    36   0.004  10
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       38   0.005  13
(AC137985) Medicago truncatula clone mth2-14m10, complete se...    38   0.005  7
(AX344566) Sequence 17 from Patent WO0200932.                      36   0.005  11
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    34   0.006  13
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    38   0.006  9
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   0.006  16
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    34   0.006  17
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    36   0.007  13
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         38   0.007  19
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693...    38   0.008  5
(AE017263) Mesoplasma florum L1 complete genome.                   36   0.009  18
(AX392733) Sequence 23 from Patent WO0212526.                      38   0.009  6
(AR707080) Sequence 23 from patent US 6933145.                     38   0.009  6
(AC157892) Medicago truncatula chromosome 7 BAC clone mte1-8...    32   0.009  11
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    38   0.012  18
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    38   0.012  15
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    38   0.012  11
(CT971576) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.012  7
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    38   0.013  9
(AC008432) Homo sapiens chromosome 5 clone CTC-320C6, comple...    42   0.013  6
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    34   0.014  10
(AB263749) Ipomoea trifida DNA, self-incompatibility (S-) lo...    34   0.014  8
(CP000312) Clostridium perfringens SM101, complete genome.         34   0.016  18
(BX538351) Cryptosporidium parvum chromosome 6, complete seq...    34   0.017  11
(ER291817) 1092343607287 Global-Ocean-Sampling_GS-34-01-01-1...    42   0.017  2
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    36   0.018  13
(AC005507) Plasmodium falciparum chromosome 12 clone 3D7, **...    40   0.019  10
(AC004974) Homo sapiens PAC clone RP5-1140G11 from 14q24.3, ...    44   0.019  4
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1...    36   0.020  11
(BX005406) Zebrafish DNA sequence from clone CH211-169P10 in...    36   0.021  7
(AP009247) Candidatus Vesicomyosocius okutanii HA DNA, compl...    40   0.023  20
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771...    34   0.024  8
(AL049183) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    36   0.024  8
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   0.025  12
(CU656010) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.027  8
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3...    36   0.030  11
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    36   0.030  11
(AC222363) Bos taurus clone CH240-416C7, WORKING DRAFT SEQUE...    34   0.030  10
(EF568108) Glossina pallidipes salivary gland hypertrophy vi...    36   0.032  13
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    38   0.035  14
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    36   0.035  13
(CU571297) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    52   0.036  1
(CU468524) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    52   0.036  1
(AF335994) Lepidopsocid RS-2001 mitochondrion, complete genome.    34   0.037  6
(AM427204) Vitis vinifera contig VV78X219337.50, whole genom...    40   0.038  3
(CR940352) Theileria annulata genomic DNA chromosome 3.            36   0.041  15
(CR626908) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.044  5
(DQ492251) Leishmania mexicana strain MHOM/??/1994/BEHA maxi...    46   0.044  3
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    38   0.045  19
(AC006281) Plasmodium falciparum chromosome 12 clone 3D7, **...    36   0.046  11
(AC006280) Plasmodium falciparum chromosome 12 clone 3D7, **...    36   0.046  10

>(AU266501) Dictyostelium discoideum vegetative cDNA clone:VSG451,
           5' end single read.
          Length = 543

 Score = 1059 bits (534), Expect = 0.0
 Identities = 534/534 (100%)
 Strand = Plus / Plus


Query: 10  atctcactctgttccatataattttatatatataattaataatggattttagttcaattg 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  atctcactctgttccatataattttatatatataattaataatggattttagttcaattg 69


Query: 70  aacaaaatttaaataactttaaaaagcttgttgctggtaattcagataaagcacaaatta 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aacaaaatttaaataactttaaaaagcttgttgctggtaattcagataaagcacaaatta 129


Query: 130 caccagttttagttcaattaaaattagcagcaacaattcatttagaaaaaccaacttctc 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 caccagttttagttcaattaaaattagcagcaacaattcatttagaaaaaccaacttctc 189


Query: 190 tttcaaatgtttctgataaagttaaaaaagatttagttttagcaagagagattttagaat 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tttcaaatgtttctgataaagttaaaaaagatttagttttagcaagagagattttagaat 249


Query: 250 taatttcattatattcaattaaaattaaagatattgattcatttgaaagaacatttaatc 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 taatttcattatattcaattaaaattaaagatattgattcatttgaaagaacatttaatc 309


Query: 310 aattaaagacatactattatgattataaatcaattattgcaccatcaacattagaatatc 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aattaaagacatactattatgattataaatcaattattgcaccatcaacattagaatatc 369


Query: 370 aaattattggtttgaatttaatgagattattagcaaaacataaaacatcagaattccata 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaattattggtttgaatttaatgagattattagcaaaacataaaacatcagaattccata 429


Query: 430 gcgaaattgaattaatcgaatttaataatttagataactcattcattaaattcccattat 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gcgaaattgaattaatcgaatttaataatttagataactcattcattaaattcccattat 489


Query: 490 tggttgaaaaatcaattacagaggggtagttataataaaattattcaatcaaga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tggttgaaaaatcaattacagaggggtagttataataaaattattcaatcaaga 543

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,375,494,945
Number of extensions: 96166073
Number of successful extensions: 9606435
Number of sequences better than 10.0: 1366
Length of query: 868
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 844
Effective length of database: 97,308,875,965
Effective search space: 82128691314460
Effective search space used: 82128691314460
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 7
Homology vs Protein 
Query= Contig-U13410-1 (Contig-U13410-1Q) /CSM_Contig/Contig-U13410-1Q.Seq.d
         (868 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P02889) RecName: Full=Probable 26S proteasome non-ATPase regula...   299   e-138
EF677720_1(EF677720|pid:none) Picea sitchensis clone WS02773_J23...   102   6e-45
BT052854_1(BT052854|pid:none) Medicago truncatula clone MTYFL_FM...   100   1e-42
EF145103_1(EF145103|pid:none) Populus trichocarpa clone WS01120_...    97   3e-41
BT034977_1(BT034977|pid:none) Zea mays full-length cDNA clone ZM...    99   4e-41
BT074802_1(BT074802|pid:none) Osmerus mordax clone omor-eva-508-...    92   2e-38
AY230847_1(AY230847|pid:none) Arabidopsis thaliana 26S proteasom...    94   3e-38
BT047981_1(BT047981|pid:none) Salmo salar clone ssal-eve-501-254...    92   3e-38
BT073789_1(BT073789|pid:none) Oncorhynchus mykiss clone omyk-evo...    91   8e-38
QXDO(A03384) 26S proteasome regulatory complex chain p31 [simila...    95   1e-37
BC131885_1(BC131885|pid:none) Xenopus laevis cDNA clone IMAGE:63...    91   3e-37
BT074248_1(BT074248|pid:none) Oncorhynchus mykiss clone omyk-evo...    91   1e-36
BC068763_1(BC068763|pid:none) Xenopus laevis hypothetical protei...    91   1e-36
AK301771_1(AK301771|pid:none) Homo sapiens cDNA FLJ56327 complet...    90   4e-36
BT081171_1(BT081171|pid:none) Caligus clemensi clone ccle-evs-51...    96   4e-36
AE014296_2921(AE014296|pid:none) Drosophila melanogaster chromos...    94   9e-36
BC105894_1(BC105894|pid:none) Rattus norvegicus proteasome (pros...    91   1e-35
AK159795_1(AK159795|pid:none) Mus musculus osteoclast-like cell ...    91   2e-35
AK002921_1(AK002921|pid:none) Mus musculus adult male kidney cDN...    91   2e-35
AK159926_1(AK159926|pid:none) Mus musculus osteoclast-like cell ...    90   2e-35
BC103400_1(BC103400|pid:none) Bos taurus proteasome (prosome, ma...    87   3e-35
AK167948_1(AK167948|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK...    89   6e-35
AK020132_1(AK020132|pid:none) Mus musculus 12 days embryo male w...    91   7e-35
(Q9CX56) RecName: Full=26S proteasome non-ATPase regulatory subu...    91   7e-35
AY888507_1(AY888507|pid:none) Synthetic construct Homo sapiens c...    90   1e-34
BT076018_1(BT076018|pid:none) Caligus rogercresseyi clone crog-e...    92   8e-34
CP001332_208(CP001332|pid:none) Micromonas sp. RCC299 chromosome...    89   1e-30
AK168886_1(AK168886|pid:none) Mus musculus 16 days embryo kidney...    91   6e-30
AM502250_162(AM502250|pid:none) Leishmania infantum chromosome 32.     74   2e-26
AK153329_1(AK153329|pid:none) Mus musculus bone marrow macrophag...    82   2e-26
AM494969_135(AM494969|pid:none) Leishmania braziliensis chromoso...    73   5e-26
CT005269_125(CT005269|pid:none) Leishmania major strain Friedlin...    72   1e-25
AB017067_14(AB017067|pid:none) Arabidopsis thaliana genomic DNA,...    91   5e-24
CP000589_5(CP000589|pid:none) Ostreococcus lucimarinus CCE9901 c...    78   1e-22
AM910990_281(AM910990|pid:none) Plasmodium knowlesi strain H chr...    75   1e-22
CR382124_471(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    64   4e-21
CU928181_399(CU928181|pid:none) Zygosaccharomyces rouxii strain ...    62   3e-20
CR382127_570(CR382127|pid:none) Yarrowia lipolytica strain CLIB1...    62   2e-19
AM270360_25(AM270360|pid:none) Aspergillus niger contig An16c008...    64   7e-18
BT074822_1(BT074822|pid:none) Osmerus mordax clone omor-eva-517-...    94   8e-18
AM920435_392(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    63   5e-17
AE017342_221(AE017342|pid:none) Cryptococcus neoformans var. neo...    62   1e-15
(P50524) RecName: Full=26S proteasome regulatory subunit rpn12; ...    56   2e-15
FN319176_1(FN319176|pid:none) Schistosoma japonicum isolate Anhu...    85   3e-15
FN357412_36(FN357412|pid:none) Schistosoma mansoni genome sequen...    82   2e-14
FN319178_1(FN319178|pid:none) Schistosoma japonicum isolate Anhu...    82   2e-14
CU928171_5(CU928171|pid:none) Kluyveromyces thermotolerans strai...    66   1e-09
CR382134_413(CR382134|pid:none) Debaryomyces hansenii strain CBS...    66   2e-09
AE016819_511(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    61   4e-08
FM992689_811(FM992689|pid:none) Candida dubliniensis CD36 chromo...    57   8e-07
AL096809_7(AL096809|pid:none) S.pombe chromosome II cosmid c342.       56   1e-06
CU607053_98(CU607053|pid:none) Podospora anserina genomic DNA ch...    56   1e-06
CP000237_691(CP000237|pid:none) Neorickettsia sennetsu strain Mi...    41   0.045
CP000118_27(CP000118|pid:none) Anabaena variabilis ATCC 29413 in...    37   0.86
CP001139_496(CP001139|pid:none) Vibrio fischeri MJ11 chromosome ...    37   1.1
AF176570_1(AF176570|pid:none) Alternaria alternata endoxylanase ...    36   1.9
CP001291_3735(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...    35   2.5
AY220529_1(AY220529|pid:none) Stolbur phytoplasma hypothetical N...    35   2.5
AL845423_3(AL845423|pid:none) Mouse DNA sequence from clone RP23...    35   3.2
AK044357_1(AK044357|pid:none) Mus musculus adult retina cDNA, RI...    35   3.2
AL008970_4(AL008970|pid:none) Plasmodium falciparum MAL3P4.  &AL...    35   4.3
AC149306_18(AC149306|pid:none) Medicago truncatula clone mth2-88...    35   4.3
AE014188_377(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.3
AE017245_173(AE017245|pid:none) Mycoplasma synoviae 53, complete...    35   4.3
AE009951_1209(AE009951|pid:none) Fusobacterium nucleatum subsp. ...    35   4.3
FM204884_365(FM204884|pid:none) Streptococcus equi subsp. zooepi...    35   4.3
CP001129_1554(CP001129|pid:none) Streptococcus equi subsp. zooep...    35   4.3
CP001279_815(CP001279|pid:none) Nautilia profundicola AmH, compl...    34   5.5
AE017261_56(AE017261|pid:none) Picrophilus torridus DSM 9790, co...    34   5.6
(Q7S2R9) RecName: Full=Eukaryotic translation initiation factor ...    34   5.6
CP000702_122(CP000702|pid:none) Thermotoga petrophila RKU-1, com...    34   7.2
AJ720555_1(AJ720555|pid:none) Gallus gallus mRNA for hypothetica...    34   7.2
CP000053_657(CP000053|pid:none) Rickettsia felis URRWXCal2, comp...    34   7.2
AF241225_1(AF241225|pid:none) Plasmodium falciparum glutamate de...    34   7.3
AM933173_2600(AM933173|pid:none) Salmonella enterica subsp. ente...    34   7.3
AE015450_264(AE015450|pid:none) Mycoplasma gallisepticum strain ...    33   9.5
AE014185_180(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    33   9.5
AL844509_490(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    33   9.5

>(P02889) RecName: Full=Probable 26S proteasome non-ATPase
           regulatory subunit 8; AltName: Full=26S proteasome
           regulatory subunit S14; AltName: Full=Vegetative cell
           protein X; AltName: Full=Protein M4;
           &AC116984_56(AC116984|pid:none)
          Length = 263

 Score =  299 bits (766), Expect(2) = e-138
 Identities = 155/155 (100%), Positives = 155/155 (100%)
 Frame = +3

Query: 51  MDFSSIEQNLNNFKKLVAGNSDKAQITPVLVQLKLAATIHLEKPTSLSNVSDKVKKDLVL 230
           MDFSSIEQNLNNFKKLVAGNSDKAQITPVLVQLKLAATIHLEKPTSLSNVSDKVKKDLVL
Sbjct: 1   MDFSSIEQNLNNFKKLVAGNSDKAQITPVLVQLKLAATIHLEKPTSLSNVSDKVKKDLVL 60

Query: 231 AREILELISLYSIKIKDIDSFERTFNQLKTYYYDYKSIIAPSTLEYQIIGLNLMRLLAKH 410
           AREILELISLYSIKIKDIDSFERTFNQLKTYYYDYKSIIAPSTLEYQIIGLNLMRLLAKH
Sbjct: 61  AREILELISLYSIKIKDIDSFERTFNQLKTYYYDYKSIIAPSTLEYQIIGLNLMRLLAKH 120

Query: 411 KTSEFHSEIELIEFNNLDNSFIKFPLLVEKSITEG 515
           KTSEFHSEIELIEFNNLDNSFIKFPLLVEKSITEG
Sbjct: 121 KTSEFHSEIELIEFNNLDNSFIKFPLLVEKSITEG 155

 Score =  216 bits (549), Expect(2) = e-138
 Identities = 107/116 (92%), Positives = 110/116 (94%)
 Frame = +1

Query: 493 LKNQLQRGSYNKIIQSRSGVPSEYYQVFLDILADSIKEDIANCSEKSFKTLSLKDAEKVL 672
           ++  +  GSYNKIIQSRSGVPSEYYQVFLDILADSIKEDIANCSEKSFKTLSLKDAEKVL
Sbjct: 148 VEKSITEGSYNKIIQSRSGVPSEYYQVFLDILADSIKEDIANCSEKSFKTLSLKDAEKVL 207

Query: 673 LFNDNNQFQQYIKERNWKVQGDVIQFGNNDNQTVVIPSLQLNHQTLHYAKELERIV 840
           LFNDNNQFQQYIKERNWKVQGDVIQFGNNDNQTV IPSLQL HQTLHYAKELERIV
Sbjct: 208 LFNDNNQFQQYIKERNWKVQGDVIQFGNNDNQTVEIPSLQLIHQTLHYAKELERIV 263

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,058,076,833
Number of extensions: 18221240
Number of successful extensions: 50558
Number of sequences better than 10.0: 78
Number of HSP's gapped: 50493
Number of HSP's successfully gapped: 125
Length of query: 289
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 162
Effective length of database: 640,137,871
Effective search space: 103702335102
Effective search space used: 103702335102
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.47  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U13410-1 is cyt
VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0