NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13400-1
Contig ID Contig-U13400-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13400-1 (Contig-U13400-1Q) /CSM_Contig/Contig-U13400-1Q.Seq.d
AAAAATTTAATAAAAATATATATTAATTTTTTATTTTTTTTTTCAATTAT
TTATTTTTTTATTATAGAATTTAAATTTTTTACAAAAAAATGGCAGCATT
AGAAAATTTTTTAATTTTAAGAGATGGAATTAACCAATCAAAATTTATGG
AAATGTTTGAAAAATTTTTTCATGAAAATGTTGTAATGATCCAAAATGGA
GCCATCATAGAGGGAAAAGCCAAAAATAGAGAAATCCAAGAAAACTTTAT
TAAAAACTCTGTTATTCATGAAATTAAAATTGTTTCATTTGAAGAAAGGG
GAGACACTATTGTTTATCAAATGGTAATGAATTTTGAAATTGGTGGTCAT
GTAATTAACAAAAACCAAGAGGTTCATCAAACTTGGGAATATGATAAAGT
TATTAGAGAATTATATGTTTAGAAAAAAGTAAAAAAGAAAAAAAAAGTAA
AAATTAATAATTTTATATAAAATTAAATAAAAATATCATTTGAATTTATT
TTTAAATGATTTAATAATTAAATAAAAAAAAAAAAAAAAAAAAAAAAAAA
ATAAAAATAATCTTTAAGAAAGCTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
Gap no gap
Contig length 617
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2288874
End point 2289491
Strand (PLUS/MINUS) PLUS
Number of clones 25
Number of EST 26
Link to clone list U13400
List of clone(s) 

est1=SSA780E,1,524
est2=SSI532F,3,434
est3=SSD306E,43,431
est4=SSJ109E,47,523
est5=SSL258F,47,396
est6=SSC451F,48,527
est7=SSE442F,48,355
est8=SSE451E,48,527
est9=SSJ707E,48,431
est10=SSM329E,48,545
est11=SSG394E,49,580
est12=SSJ575E,49,432
est13=SSA518Z,50,525
est14=SSA543E,51,547
est15=SSH546E,61,544
est16=SSK337Z,78,574
est17=SSA468Z,81,523
est18=SSC280Z,84,548
est19=SSA696Z,85,525
est20=SSK483Z,117,525
est21=SSF752Z,134,594
est22=SSI104Z,154,525
est23=SSK894Z,171,544
est24=SSM777Z,181,523
est25=SSL385Z,257,526
est26=SSC451Z,470,618
Translated Amino Acid sequence 
kfnkniy*ffifffnylffyyri*IFYKKMAALENFLILRDGINQSKFMEMFEKFFHENV
VMIQNGAIIEGKAKNREIQENFIKNSVIHEIKIVSFEERGDTIVYQMVMNFEIGGHVINK
NQEVHQTWEYDKVIRELYV*kkvkkkkkvkinnfi*n*ikisfefifk*fnn*ikkkkkk
kkk*k*slrklkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
knlikiyinflfffsiiyffiiefkfftkkwqh*kif*f*emeltnqnlwkclknffmkm
l**skmeps*rekpkiekskktllktllfmklklfhlkkgetllfikw**ilklvvm*lt
ktkrfiklgnmikllenymfrkk*krkkk*kliilykik*kyhlnlflndliik*kkkkk
kkknknnl*es*kkkkkkkkkkkkk


Frame B:
ki**kyilifyfffqlfifll*nlnflqkngsirkffnfkrwn*pikiygnv*kifs*kc
cndpkwshhrgksqk*rnprkly*klcys*n*ncfi*rkgrhyclsngnef*nwwscn*q
kprgssnlgi**sy*riiclekskkekkskn**fyiklnknii*iyf*mi**lnkkkkkk
kkkikiifkkakkkkkkkkkkkkkk


Frame C:
kfnkniy*ffifffnylffyyri*IFYKKMAALENFLILRDGINQSKFMEMFEKFFHENV
VMIQNGAIIEGKAKNREIQENFIKNSVIHEIKIVSFEERGDTIVYQMVMNFEIGGHVINK
NQEVHQTWEYDKVIRELYV*kkvkkkkkvkinnfi*n*ikisfefifk*fnn*ikkkkkk
kkk*k*slrklkkkkkkkkkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13400-1 (Contig-U13400-1Q)
/CSM_Contig/Contig-U13400-1Q.Seq.d
         (617 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13400-1 (Contig-U13400-1Q) /CSM_Contig/Conti...   658  0.0
Contig-U11176-1 (Contig-U11176-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U11943-1 (Contig-U11943-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U11278-1 (Contig-U11278-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U08962-1 (Contig-U08962-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U14836-1 (Contig-U14836-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U14661-1 (Contig-U14661-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U14412-1 (Contig-U14412-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U13906-1 (Contig-U13906-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U11181-1 (Contig-U11181-1Q) /CSM_Contig/Conti...    36  0.043

>Contig-U13400-1 (Contig-U13400-1Q) /CSM_Contig/Contig-U13400-1Q.Seq.d
          Length = 617

 Score =  658 bits (332), Expect = 0.0
 Identities = 332/332 (100%)
 Strand = Plus / Plus

                                                                       
Query: 91  tggcagcattagaaaattttttaattttaagagatggaattaaccaatcaaaatttatgg 150
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  tggcagcattagaaaattttttaattttaagagatggaattaaccaatcaaaatttatgg 150

                                                                       
Query: 151 aaatgtttgaaaaattttttcatgaaaatgttgtaatgatccaaaatggagccatcatag 210
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 aaatgtttgaaaaattttttcatgaaaatgttgtaatgatccaaaatggagccatcatag 210

                                                                       
Query: 211 agggaaaagccaaaaatagagaaatccaagaaaactttattaaaaactctgttattcatg 270
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 agggaaaagccaaaaatagagaaatccaagaaaactttattaaaaactctgttattcatg 270

                                                                       
Query: 271 aaattaaaattgtttcatttgaagaaaggggagacactattgtttatcaaatggtaatga 330
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aaattaaaattgtttcatttgaagaaaggggagacactattgtttatcaaatggtaatga 330

                                                                       
Query: 331 attttgaaattggtggtcatgtaattaacaaaaaccaagaggttcatcaaacttgggaat 390
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 attttgaaattggtggtcatgtaattaacaaaaaccaagaggttcatcaaacttgggaat 390

                                           
Query: 391 atgataaagttattagagaattatatgtttag 422
           ||||||||||||||||||||||||||||||||
Sbjct: 391 atgataaagttattagagaattatatgtttag 422


 Score = 77.8 bits (39), Expect = 1e-14
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                  
Query: 485 atcatttgaatttatttttaaatgatttaataattaaat 523
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atcatttgaatttatttttaaatgatttaataattaaat 523


 Score = 52.0 bits (26), Expect = 7e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 1  aaaaatttaataaaaatatatattaa 26
          ||||||||||||||||||||||||||
Sbjct: 1  aaaaatttaataaaaatatatattaa 26


>Contig-U11176-1 (Contig-U11176-1Q) /CSM_Contig/Contig-U11176-1Q.Seq.d
          Length = 1539

 Score = 42.1 bits (21), Expect = 7e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 499 tttttaaatgatttaataattaaat 523
           |||||||||||||||||||| ||||
Sbjct: 9   tttttaaatgatttaataatcaaat 33


>Contig-U11943-1 (Contig-U11943-1Q) /CSM_Contig/Contig-U11943-1Q.Seq.d
          Length = 882

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 493 aatttatttttaaatgattt 512
           ||||||||||||||||||||
Sbjct: 773 aatttatttttaaatgattt 754


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,094
Number of Sequences: 6905
Number of extensions: 15094
Number of successful extensions: 1898
Number of sequences better than 10.0: 224
length of query: 617
length of database: 5,674,871
effective HSP length: 16
effective length of query: 601
effective length of database: 5,564,391
effective search space: 3344198991
effective search space used: 3344198991
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 9
Homology vs DNA 
Query= Contig-U13400-1 (Contig-U13400-1Q) /CSM_Contig/Contig-U13400-1Q.Seq.d
         (617 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU037032) Dictyostelium discoideum slug cDNA, clone SSA780.      583   e-169  2
(AU039057) Dictyostelium discoideum slug cDNA, clone SSM329.      601   e-167  1
(AU038310) Dictyostelium discoideum slug cDNA, clone SSH546.      601   e-167  1
(C92259) Dictyostelium discoideum slug cDNA, clone SSD306.        601   e-167  1
(C91932) Dictyostelium discoideum slug cDNA, clone SSC280.        601   e-167  1
(C91330) Dictyostelium discoideum slug cDNA, clone SSK483.        601   e-167  1
(C91103) Dictyostelium discoideum slug cDNA, clone SSJ575.        601   e-167  1
(C91020) Dictyostelium discoideum slug cDNA, clone SSJ707.        601   e-167  1
(C83899) Dictyostelium discoideum slug cDNA, clone SSA543.        601   e-167  1
(C83887) Dictyostelium discoideum slug cDNA, clone SSA518.        601   e-167  1
(AU037917) Dictyostelium discoideum slug cDNA, clone SSE451.      595   e-166  1
(C91484) Dictyostelium discoideum slug cDNA, clone SSK337.        595   e-166  1
(C90753) Dictyostelium discoideum slug cDNA, clone SSJ109.        595   e-166  1
(C83878) Dictyostelium discoideum slug cDNA, clone SSA468.        587   e-163  1
(C83937) Dictyostelium discoideum slug cDNA, clone SSA696.        579   e-161  1
(C92911) Dictyostelium discoideum slug cDNA, clone SSF752.        553   e-153  1
(C90111) Dictyostelium discoideum slug cDNA, clone SSI104.        533   e-147  1
(C94370) Dictyostelium discoideum slug cDNA, clone SSK894.        492   e-135  1
(C93385) Dictyostelium discoideum slug cDNA, clone SSM777.        480   e-131  1
(AU073212) Dictyostelium discoideum slug cDNA, clone SSG394.      335   1e-87  1
(AU072413) Dictyostelium discoideum slug cDNA, clone SSE442.      333   4e-87  1
(AU071753) Dictyostelium discoideum slug cDNA, clone SSC451.      333   4e-87  1
(AU074557) Dictyostelium discoideum slug cDNA, clone SSL258.      331   2e-86  1
(AU038714) Dictyostelium discoideum slug cDNA, clone SSL385.      329   7e-86  1
(AU073849) Dictyostelium discoideum slug cDNA, clone SSI532.      236   8e-58  1
(ET214106) MUGQ_CH252P416D18Sp6_CP797_077 CHORI-252 Vervet M...    38   0.17   2
(CW268481) 104_739_11401326_116_35309_027 Sorghum methylatio...    46   0.18   2
(AC146565) Medicago truncatula clone mth2-71g17, WORKING DRA...    48   0.37   1
(AC198253) Myotis lucifugus clone CH235-88L10, WORKING DRAFT...    48   0.37   1
(CR499985) mth2-177E21FM1 BAC end, cultivar Jemalong A17 of ...    48   0.37   1
(CR496261) mth2-171B24RM2 BAC end, cultivar Jemalong A17 of ...    48   0.37   1
(CR478688) mth2-188O14FM1 BAC end, cultivar Jemalong A17 of ...    48   0.37   1
(CG959822) MBEJH47TR mth2 Medicago truncatula genomic clone ...    48   0.37   1
(BH587021) BOHSH33TR BOHS Brassica oleracea genomic clone BO...    48   0.37   1
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    42   0.54   5
(AC188064) Callithrix jacchus chromosome UNK clone CH259-78H...    44   0.71   5
(Z50029) Caenorhabditis elegans Cosmid ZC504.                      36   1.4    3
(BX005256) Zebrafish DNA sequence from clone DKEY-79D12.           46   1.5    1
(AM470054) Vitis vinifera contig VV78X203532.12, whole genom...    46   1.5    1
(AC147738) Dasypus novemcinctus clone VMRC5-523G2, WORKING D...    46   1.5    1
(AC141726) Apis mellifera clone CH224-57G2, WORKING DRAFT SE...    46   1.5    1
(CR848042) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   1.5    1
(AC172813) Bos taurus clone CH240-167E3, WORKING DRAFT SEQUE...    46   1.5    1
(CW382310) fsbb001f064c17f0 Sorghum methylation filtered lib...    46   1.5    1
(CW245241) 104_706_11220940_116_37600_012 Sorghum methylatio...    46   1.5    1
(CW245240) 104_706_11220940_116_35081_012 Sorghum methylatio...    46   1.5    1
(CU826691) A BAC library has been constructed from PN40024 g...    46   1.5    1
(BZ577630) msh2_550.y2 msh Pseudomonas aeruginosa genomic cl...    46   1.5    1
(CB098004) ku47h06.y1 Strongyloides ratti PA female naive pA...    46   1.5    1
(CP000469) Shewanella sp. ANA-3, complete genome.                  46   1.5    1
(CP000446) Shewanella sp. MR-4, complete genome.                   46   1.5    1
(CP000444) Shewanella sp. MR-7, complete genome.                   46   1.5    1
(AE014299) Shewanella oneidensis MR-1, complete genome.            46   1.5    1
(AC196597) Myotis lucifugus clone CH235-355F6, WORKING DRAFT...    38   1.7    3
(AM476406) Vitis vinifera contig VV78X034243.8, whole genome...    38   1.9    3
(U97194) Caenorhabditis elegans cosmid C37A2, complete seque...    38   2.8    3
(CT963113) Medicago truncatula chromosome 5 clone mth2-181g1...    34   3.0    2
(CP000882) Hemiselmis andersenii chromosome 2, complete sequ...    36   3.1    7
(AC101669) Mus musculus chromosome 7 clone RP23-78B12 map 7,...    38   3.4    4
(AM470603) Vitis vinifera, whole genome shotgun sequence, co...    44   3.4    2
(AQ473443) CITBI-E1-2596N6.TF CITBI-E1 Homo sapiens genomic ...    36   3.5    2
(DQ832411) Eryngium ebracteatum trnQ-rps16 intergenic spacer...    38   4.6    2
(AL117204) Caenorhabditis elegans YAC Y116A8C.                     34   4.8    7
(AM429223) Vitis vinifera contig VV78X259035.12, whole genom...    44   5.0    2
(AE002123) Ureaplasma parvum serovar 3 str. ATCC 700970 sect...    32   5.3    4
(DL005607) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES.     36   5.8    5
(CS459532) Sequence 13 from Patent WO2006117596.                   36   5.8    5
(BX323578) Zebrafish DNA sequence from clone DKEYP-81D2 in l...    44   5.8    1
(CR974487) Mouse DNA sequence from clone RP23-136M7 on chrom...    44   5.8    1
(AC120873) Mus musculus chromosome 12, clone RP23-283P14, co...    44   5.8    1
(CU137665) Medicago truncatula chromosome 5 clone mth2-152c1...    44   5.8    1
(AM478908) Vitis vinifera, whole genome shotgun sequence, co...    44   5.8    1
(AM474473) Vitis vinifera contig VV78X213850.2, whole genome...    44   5.8    1
(AM458572) Vitis vinifera contig VV78X052448.9, whole genome...    44   5.8    1
(AM452167) Vitis vinifera, whole genome shotgun sequence, co...    44   5.8    1
(AM446545) Vitis vinifera contig VV78X170674.8, whole genome...    44   5.8    1
(AM439030) Vitis vinifera contig VV78X248489.12, whole genom...    44   5.8    1
(AM439027) Vitis vinifera contig VV78X067796.6, whole genome...    44   5.8    1
(AM425191) Vitis vinifera contig VV78X186343.3, whole genome...    44   5.8    1
(AB026658) Arabidopsis thaliana genomic DNA, chromosome 3, P...    44   5.8    1
(CQ586892) Sequence 14650 from Patent WO0171042.                   44   5.8    1
(AX647271) Sequence 1463 from Patent EP1270724.                    44   5.8    1
(Z78060) Caenorhabditis elegans Cosmid C34D1.                      44   5.8    1
(AF047659) Caenorhabditis elegans cosmid K07H8, complete seq...    44   5.8    1
(AE014134) Drosophila melanogaster chromosome 2L, complete s...    44   5.8    1
(AC007147) Drosophila melanogaster, chromosome 2L, region 32...    44   5.8    1
(AL356282) Human DNA sequence from clone RP11-303E19 on chro...    44   5.8    1
(AC148357) Sorex araneus clone SA_Ba-618M20, WORKING DRAFT S...    44   5.8    1
(AC148353) Sorex araneus clone SA_Ba-185M24, WORKING DRAFT S...    44   5.8    1
(AC114187) Rattus norvegicus clone CH230-229P12, *** SEQUENC...    44   5.8    1
(AC097203) Rattus norvegicus clone CH230-213H17, *** SEQUENC...    44   5.8    1
(CT826400) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.8    1
(CT009626) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   5.8    1
(AC175481) Bos taurus clone CH240-304K11, WORKING DRAFT SEQU...    44   5.8    1
(AC020189) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   5.8    1
(EK422123) 1095515518262 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.8    1
(EK388761) 1095469492677 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.8    1
(EK054390) 1092960003188 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.8    1
(EI984443) SB_BBc52-O17.R SB_BBc Sorghum bicolor genomic 3',...    44   5.8    1
(EI307970) GM_WBc0037E06.f GM_WBc Glycine max genomic clone ...    44   5.8    1

>(AU037032) Dictyostelium discoideum slug cDNA, clone SSA780.
          Length = 524

 Score =  583 bits (294), Expect(2) = e-169
 Identities = 300/303 (99%)
 Strand = Plus / Plus


Query: 120 agagatggaattaaccaatcaaaatttatggaaatgtttgaaaaattttttcatgaaaat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 agagatggaattaaccaatcaaaatttatggaaatgtttgaaaaattttttcatgaaaat 179


Query: 180 gttgtaatgatccaaaatggagccatcatagagggaaaagccaaaaatagagaaatccaa 239
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 180 gttgtaatgatccaaaatggagccatcatagagggaaaagccanaaatagagaaatccaa 239


Query: 240 gaaaactttattaaaaactctgttattcatgaaattaaaattgtttcatttgaagaaagg 299
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gaaaactttattnnaaactctgttattcatgaaattaaaattgtttcatttgaagaaagg 299


Query: 300 ggagacactattgtttatcaaatggtaatgaattttgaaattggtggtcatgtaattaac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ggagacactattgtttatcaaatggtaatgaattttgaaattggtggtcatgtaattaac 359


Query: 360 aaaaaccaagaggttcatcaaacttgggaatatgataaagttattagagaattatatgtt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aaaaaccaagaggttcatcaaacttgggaatatgataaagttattagagaattatatgtt 419


Query: 420 tag 422
           |||
Sbjct: 420 tag 422

 Score = 50.1 bits (25), Expect(2) = e-169
 Identities = 25/25 (100%)
 Strand = Plus / Plus


Query: 1  aaaaatttaataaaaatatatatta 25
          |||||||||||||||||||||||||
Sbjct: 1  aaaaatttaataaaaatatatatta 25

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 560,894,543
Number of extensions: 40608993
Number of successful extensions: 3937080
Number of sequences better than 10.0: 134
Length of query: 617
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 594
Effective length of database: 93,106,754,628
Effective search space: 55305412249032
Effective search space used: 55305412249032
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 7
Homology vs Protein 
Query= Contig-U13400-1 (Contig-U13400-1Q) /CSM_Contig/Contig-U13400-1Q.Seq.d
         (617 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000083_2430(CP000083|pid:none) Colwellia psychrerythraea 34H, ...    35   2.2
AM474825_2(AM474825|pid:none) Vitis vinifera contig VV78X075200....    33   8.4
BX908798_1158(BX908798|pid:none) Parachlamydia-related symbiont ...    33   8.4

>CP000083_2430(CP000083|pid:none) Colwellia psychrerythraea 34H,
           complete genome.
          Length = 122

 Score = 34.7 bits (78), Expect = 2.2
 Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
 Frame = +3

Query: 174 ENVVMIQNGAII-EGKAKNREIQENFIKNSVIHEIKIVSFEERGDTIVYQMVMNFEI--G 344
           E+V+M+ NG +  +   ++ + Q+ F+ +     +++VS    G+  V ++  N+++
Sbjct: 37  EDVIMLNNGKVFAKSMRESYDKQKGFVSSIKEFTVELVSKTIDGN--VAELTFNYKMMNS 94

Query: 345 GHVINKNQEVH-QTWEYDKVIRELYV 419
              +N+    H QTW+ DK+I+E YV
Sbjct: 95  DSTLNEFTGKHIQTWKNDKIIKEEYV 120

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 537,313,694
Number of extensions: 8044688
Number of successful extensions: 19238
Number of sequences better than 10.0: 3
Number of HSP's gapped: 19235
Number of HSP's successfully gapped: 3
Length of query: 205
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 82
Effective length of database: 653,084,107
Effective search space: 53552896774
Effective search space used: 53552896774
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.62  gvh: 0.44  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: vesicles of secretory system

>> prediction for Contig-U13400-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 25
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0