Contig-U13391-1 |
Contig ID |
Contig-U13391-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
389 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
2461479 |
End point |
2461868 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U13391 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12. 9 |
Homology vs DNA |
Query= Contig-U13391-1 (Contig-U13391-1Q) /CSM_Contig/Contig-U13391-1Q.Seq.d (389 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU071615) Dictyostelium discoideum slug cDNA, clone SSC102. 476 e-130 1 (AM456206) Vitis vinifera contig VV78X257399.13, whole genom... 42 0.002 2 (AM427475) Vitis vinifera contig VV78X163885.14, whole genom... 40 0.018 2 (AC188370) Glycine max clone gmp1-120k16, complete sequence. 50 0.058 1 (ER548246) 1093016198016 Global-Ocean-Sampling_GS-35-01-01-1... 50 0.058 1 (CW483911) fsbb001f245m13f0 Sorghum methylation filtered lib... 50 0.058 1 (DN295124) PL03019A1B08 cDNA from sexually mature hermaphodi... 50 0.058 1 (AP008971) Finegoldia magna ATCC 29328 DNA, complete genome. 40 0.096 11 (AC221343) Bos taurus clone CH240-404A5, WORKING DRAFT SEQUE... 38 0.13 2 (AC219952) Bos taurus clone CH240-317N9, WORKING DRAFT SEQUE... 38 0.14 2 (BV092599) RPAMMSEQ0004515 Roche Palo Alto Mus musculus STS ... 48 0.23 1 (AC120003) Mus musculus chromosome 8, clone RP24-148H22, com... 48 0.23 1 (AC160215) Atelerix albiventris clone LB4-204M24, WORKING DR... 48 0.23 1 (AC157852) Atelerix albiventris clone LB4-260B7, WORKING DRA... 48 0.23 1 (AC157851) Atelerix albiventris clone LB4-16J17, WORKING DRA... 48 0.23 1 (AG939001) Drosophila ananassae DNA, clone: DNB1-009L18.R.fa... 48 0.23 1 (DC215128) Plasmodium berghei strain ANKA cDNA clone:MG01732... 48 0.23 1 (AC170220) Bos taurus clone CH240-236L17, WORKING DRAFT SEQU... 38 0.30 4 (CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 38 0.34 15 (AM438175) Vitis vinifera, whole genome shotgun sequence, co... 42 0.37 3 (AL844507) Plasmodium falciparum chromosome 8. 34 0.40 10 (CT553222) A BAC library has been constructed from cultivar ... 34 0.81 2 (AC168683) Strongylocentrotus purpuratus clone R3-3014O11, W... 34 0.82 4 (AL591978) Listeria monocytogenes strain EGD, complete genom... 34 0.87 4 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 36 0.91 6 (BX908756) Zebrafish DNA sequence from clone CH211-190D13 in... 46 0.91 1 (AM461821) Vitis vinifera contig VV78X076849.15, whole genom... 46 0.91 1 (AM443489) Vitis vinifera contig VV78X100420.11, whole genom... 46 0.91 1 (AM427618) Vitis vinifera contig VV78X181764.13, whole genom... 46 0.91 1 (AM426766) Vitis vinifera contig VV78X004841.6, whole genome... 46 0.91 1 (EA266462) Sequence 683 from patent US 7241867. 46 0.91 1 (EA266166) Sequence 356 from patent US 7241867. 46 0.91 1 (DD419614) GENES OF AN OTITIS MEDIA ISOLATE OF NONTYPEABLE H... 46 0.91 1 (DD419318) GENES OF AN OTITIS MEDIA ISOLATE OF NONTYPEABLE H... 46 0.91 1 (CS219618) Sequence 1633 from Patent WO2005111066. 46 0.91 1 (CQ873070) Sequence 683 from Patent WO2004078949. 46 0.91 1 (CQ872743) Sequence 356 from Patent WO2004078949. 46 0.91 1 (BD426631) The Nucleotide Sequence of the Haemophilus influe... 46 0.91 1 (BD425770) The Nucleotide Sequence of the Haemophilus influe... 46 0.91 1 (AR632719) Sequence 1 from patent US 6846651. 46 0.91 1 (AR274513) Sequence 1 from patent US 6506581. 46 0.91 1 (AR139597) Sequence 16 from patent US 6207384. 46 0.91 1 (FH280176) CHO_OF4177xl12f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 0.91 1 (ET969043) CHO_OF640xf24r1.ab1 CHO_OF Nicotiana tabacum geno... 46 0.91 1 (ER515126) 1093015498109 Global-Ocean-Sampling_GS-35-01-01-1... 46 0.91 1 (DU327579) 1098473610927 CHORI-243 Ovis aries genomic clone ... 46 0.91 1 (DU072894) 60612 Tomato HindIII BAC Library Solanum lycopers... 46 0.91 1 (CT519397) A BAC library has been constructed from cultivar ... 46 0.91 1 (FF637463) G825P587FA9.T0 Acorn worm normalized gastrula pEx... 46 0.91 1 (FF634024) G825P563FB7.T0 Acorn worm normalized gastrula pEx... 46 0.91 1 (FF626515) G825P5321FG9.T0 Acorn worm normalized gastrula pE... 46 0.91 1 (FF620566) G825P5237FF10.T0 Acorn worm normalized gastrula p... 46 0.91 1 (FF615152) G825P5184FG3.T0 Acorn worm normalized gastrula pE... 46 0.91 1 (L42023) Haemophilus influenzae Rd KW20, complete genome. 46 0.91 1 (CP000672) Haemophilus influenzae PittGG, complete genome. 46 0.91 1 (CP000671) Haemophilus influenzae PittEE, complete genome. 46 0.91 1 (CP000057) Haemophilus influenzae 86-028NP, complete genome. 46 0.91 1 (BX511089) Zebrafish DNA sequence from clone DKEY-258P11 in ... 38 0.97 3 (EJ508572) 1095407031867 Global-Ocean-Sampling_GS-28-01-01-1... 40 1.0 2 (ER418890) 1092963689437 Global-Ocean-Sampling_GS-35-01-01-1... 36 1.1 3 (CR450742) Zebrafish DNA sequence from clone CH211-232A5 in ... 40 1.1 4 (ET697498) CHO_OF389xp09r1.ab1 CHO_OF Nicotiana tabacum geno... 38 1.2 2 (AC130249) Rattus norvegicus clone CH230-226C23, *** SEQUENC... 42 1.2 2 (CR385068) Zebrafish DNA sequence from clone CH211-245H7 in ... 40 1.2 4 (BX664749) Zebrafish DNA sequence from clone DKEY-53M7 in li... 42 1.3 4 (AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 30 1.4 9 (AM481556) Vitis vinifera contig VV78X019239.11, whole genom... 40 1.4 3 (AC022024) Homo sapiens chromosome 10 clone RP11-432B10, com... 36 1.6 5 (AX641668) Sequence 2858 from Patent WO0101118. 34 1.7 5 (AM453119) Vitis vinifera contig VV78X136888.4, whole genome... 42 1.8 2 (AM484402) Vitis vinifera contig VV78X171170.4, whole genome... 40 1.8 2 (AC223899) Bos taurus clone CH240-455E17, WORKING DRAFT SEQU... 38 1.8 3 (AC141787) Apis mellifera clone CH224-59E7, WORKING DRAFT SE... 32 1.8 2 (AC126051) Mus musculus chromosome UNK clone RP23-259K18, WO... 40 2.0 4 (CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 34 2.0 12 (AM444201) Vitis vinifera contig VV78X075740.4, whole genome... 36 2.3 3 (AQ445850) nbxb0056P15r CUGI Rice BAC Library Oryza sativa J... 34 2.5 2 (AC155009) Bos taurus clone CH240-35H20, WORKING DRAFT SEQUE... 40 2.5 6 (AC156015) Mus musculus BAC clone RP24-345H1 from chromosome... 42 2.8 4 (BX548174) Prochlorococcus marinus MED4 complete genome. 38 2.9 11 (ED105425) AUAC-aat40c04.g1 Ascaris suum whole genome shotgu... 34 3.1 3 (EA692788) Sequence 71667 from patent US 7365185. 44 3.4 2 (DX437203) BE1084_F02_R IASMA L1 HindIII BAC library Vitis v... 40 3.4 2 (ER624381) 1093017544209 Global-Ocean-Sampling_GS-36-01-01-2... 34 3.4 3 (BX511188) Zebrafish DNA sequence from clone DKEY-184A17 in ... 44 3.6 1 (BX470195) Mouse DNA sequence from clone RP23-4K22 on chromo... 44 3.6 1 (AC191883) Rhesus Macaque BAC CH250-265I3 () complete seque... 44 3.6 1 (CU012043) M.truncatula DNA sequence from clone MTH2-63O12 o... 44 3.6 1 (AP008213) Oryza sativa (japonica cultivar-group) genomic DN... 44 3.6 1 (AP008212) Oryza sativa (japonica cultivar-group) genomic DN... 44 3.6 1 (AP008210) Oryza sativa (japonica cultivar-group) genomic DN... 44 3.6 1 (AP005774) Oryza sativa Japonica Group genomic DNA, chromoso... 44 3.6 1 (AP004733) Oryza sativa Japonica Group genomic DNA, chromoso... 44 3.6 1 (AP003541) Oryza sativa Japonica Group genomic DNA, chromoso... 44 3.6 1 (AM482625) Vitis vinifera contig VV78X106304.5, whole genome... 44 3.6 1 (AM447405) Vitis vinifera contig VV78X150543.5, whole genome... 44 3.6 1 (AM438808) Vitis vinifera contig VV78X149025.6, whole genome... 44 3.6 1 (AL731630) Oryza sativa genomic DNA, chromosome 4, BAC clone... 44 3.6 1 (AL606659) Oryza sativa genomic DNA, chromosome 4, BAC clone... 44 3.6 1 (AC216688) Populus trichocarpa clone POP098-A10, complete se... 44 3.6 1
>(AU071615) Dictyostelium discoideum slug cDNA, clone SSC102. Length = 240
Score = 476 bits (240), Expect = e-130 Identities = 240/240 (100%) Strand = Plus / Plus
Query: 1 caataagtaataatgatttctatgaaaaagctgttgatatagcagaatcccttcaatata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 caataagtaataatgatttctatgaaaaagctgttgatatagcagaatcccttcaatata 60
Query: 61 ataaatccattacaagttttaatctctctcatacaaaatgttcaaatcttattggtcgtg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ataaatccattacaagttttaatctctctcatacaaaatgttcaaatcttattggtcgtg 120
Query: 121 tattggcaaaatcattatgcataaatcataccctaaagaaattaatattatctcatacaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tattggcaaaatcattatgcataaatcataccctaaagaaattaatattatctcatacaa 180
Query: 181 aaatgtcatgtgctggtattgttgagtttgctcaaggtttaaaagaaaataaaattcaat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aaatgtcatgtgctggtattgttgagtttgctcaaggtttaaaagaaaataaaattcaat 240
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 551,652,490 Number of extensions: 36172884 Number of successful extensions: 3412840 Number of sequences better than 10.0: 211 Length of query: 389 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 366 Effective length of database: 93,106,754,628 Effective search space: 34077072193848 Effective search space used: 34077072193848 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
|
protein update |
2009. 7. 7 |
Homology vs Protein |
Query= Contig-U13391-1 (Contig-U13391-1Q) /CSM_Contig/Contig-U13391-1Q.Seq.d (389 letters)
Database: nrp_B 3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
BX908798_1341(BX908798|pid:none) Parachlamydia-related symbiont ... 71 1e-11 BX908798_1455(BX908798|pid:none) Parachlamydia-related symbiont ... 69 4e-11 CP000080_288(CP000080|pid:none) Leishmania major strain Friedlin... 67 1e-10 BX908798_264(BX908798|pid:none) Parachlamydia-related symbiont U... 65 6e-10 AM502247_310(AM502247|pid:none) Leishmania infantum chromosome 29. 65 1e-09 BC166378_1(BC166378|pid:none) Xenopus tropicalis hypothetical pr... 65 1e-09 (Q6ZQY2) RecName: Full=Leucine-rich repeat-containing protein LO... 64 2e-09 (Q14BP6) RecName: Full=Leucine-rich repeat-containing protein LO... 63 3e-09 FJ004846_1(FJ004846|pid:none) Ictalurus punctatus NLRC3 receptor... 62 5e-09 AY266455_1(AY266455|pid:none) Synthetic construct leucine-rich r... 60 2e-08 AF501291_1(AF501291|pid:none) Homo sapiens CARD15-like protein m... 60 2e-08 AY266456_1(AY266456|pid:none) Synthetic construct leucine-rich r... 57 2e-07 AY266453_1(AY266453|pid:none) Synthetic construct leucine-rich r... 57 2e-07 EU348832_1(EU348832|pid:none) Sus scrofa nucleotide-binding olig... 57 3e-07 AF501292_1(AF501292|pid:none) Homo sapiens CARD15-like protein m... 55 6e-07 (Q5DU56) RecName: Full=Protein NLRC3; 54 1e-06 AK079766_1(AK079766|pid:none) Mus musculus 0 day neonate thymus ... 54 1e-06 BC160196_1(BC160196|pid:none) Synthetic construct Mus musculus c... 54 1e-06 EU643474_20(EU643474|pid:none) Adineta vaga clone Av240_B G-prot... 54 2e-06 AC104642_21(AC104642|pid:none) Trypanosoma brucei chromosome 3 c... 54 2e-06 CP000087_895(CP000087|pid:none) Rickettsia bellii RML369-C, comp... 53 3e-06 A45841(A45841) T-complex-associated-testes-expressed-1 protein -... 52 5e-06 (A6H639) RecName: Full=T-complex-associated testis-expressed pro... 52 5e-06 EU643483_23(EU643483|pid:none) Adineta vaga clone Av180_A AIG1-l... 52 5e-06 EU432548_11(EU432548|pid:none) Philodina roseola guanylyl cyclas... 52 8e-06 AY056236_1(AY056236|pid:none) Arabidopsis thaliana unknown prote... 52 8e-06 CP000684_3(CP000684|pid:none) Rickettsia massiliae MTU5 plasmid ... 51 1e-05 CR954203_353(CR954203|pid:none) Ostreococcus tauri strain OTTH05... 51 1e-05 BC070501_1(BC070501|pid:none) Rattus norvegicus ribonuclease/ang... 50 2e-05 S20597(S20597) ribonuclease inhibitor - rat &X62528_1(X62528|pi... 50 2e-05 CR954203_68(CR954203|pid:none) Ostreococcus tauri strain OTTH059... 50 2e-05 (P29315) RecName: Full=Ribonuclease inhibitor; AltName: Full=Rib... 50 2e-05 AC116986_64(AC116986|pid:none) Dictyostelium discoideum chromoso... 49 4e-05 AL929041_1(AL929041|pid:none) Zebrafish DNA sequence from clone ... 49 6e-05 AC007067_12(AC007067|pid:none) Genomic sequence for Arabidopsis ... 49 7e-05 (Q53B88) RecName: Full=Nucleotide-binding oligomerization domain... 48 9e-05 DQ060248_1(DQ060248|pid:none) Danio rerio CARD15 mRNA, partial c... 48 1e-04 (Q91VI7) RecName: Full=Ribonuclease inhibitor; AltName: Full=Rib... 47 2e-04 AF071546_1(AF071546|pid:none) Mus musculus ribonuclease/angiogen... 47 2e-04 AM502230_65(AM502230|pid:none) Leishmania infantum chromosome 12. 47 2e-04 (Q4R642) RecName: Full=T-complex-associated testis-expressed pro... 47 3e-04 BC124387_1(BC124387|pid:none) Danio rerio si:ch211-234g24.1, mRN... 47 3e-04 AM494972_448(AM494972|pid:none) Leishmania braziliensis chromoso... 47 3e-04 EF396237_1(EF396237|pid:none) Nicotiana benthamiana RAN GTPase-a... 47 3e-04 BC141792_1(BC141792|pid:none) Danio rerio si:ch211-234g24.1, mRN... 47 3e-04 CU914168_1488(CU914168|pid:none) Ralstonia solanacearum strain I... 46 4e-04 AY154460_1(AY154460|pid:none) Homo sapiens NALP5 (NALP5) mRNA, c... 46 4e-04 (P59047) RecName: Full=NACHT, LRR and PYD domains-containing pro... 46 4e-04 CP000849_1055(CP000849|pid:none) Rickettsia bellii OSU 85-389, c... 46 4e-04 AM423109_1(AM423109|pid:none) Nicotiana benthamiana partial mRNA... 46 4e-04 (A0JPI9) RecName: Full=Uncharacterized protein C14orf166B homolo... 46 5e-04 FJ004845_1(FJ004845|pid:none) Ictalurus punctatus NOD2 receptor ... 45 6e-04 AM411448_1(AM411448|pid:none) Solanum tuberosum subsp. tuberosum... 45 6e-04 (Q5JU00) RecName: Full=T-complex-associated testis-expressed pro... 45 8e-04 CT005251_71(CT005251|pid:none) Leishmania major strain Friedlin,... 45 8e-04 (Q1ZXD6) RecName: Full=Probable serine/threonine-protein kinase ... 45 8e-04 BC147936_1(BC147936|pid:none) Bos taurus NLR family, pyrin domai... 45 0.001 EU340329_1(EU340329|pid:none) Macaca mulatta NLR family pyrin do... 45 0.001 AM502246_206(AM502246|pid:none) Leishmania infantum chromosome 28. 45 0.001 AF028243_1(AF028243|pid:none) Strongylocentrotus purpuratus GTPa... 45 0.001 AL646053_915(AL646053|pid:none) Ralstonia solanacearum GMI1000 m... 44 0.001 (Q8TEU9) RecName: Full=NACHT, LRR and PYD domains-containing pro... 44 0.002 AY154463_1(AY154463|pid:none) Homo sapiens NALP8 (NALP8) mRNA, c... 44 0.002 AY329487_1(AY329487|pid:none) Mus musculus strain CBA/J MATER pr... 44 0.002 AM453162_2(AM453162|pid:none) Vitis vinifera contig VV78X048857.... 44 0.002 AF468522_1(AF468522|pid:none) Homo sapiens NALP3 long isoform (N... 44 0.002 AY329484_1(AY329484|pid:none) Mus musculus strain SWR/J MATER pr... 44 0.002 BC053384_1(BC053384|pid:none) Mus musculus NLR family, pyrin dom... 44 0.002 AL606804_3(AL606804|pid:none) Human DNA sequence from clone RP11... 44 0.002 AY329490_1(AY329490|pid:none) Mus musculus strain A/J MATER prot... 44 0.002 (Q6VSG4) RecName: Full=NACHT, LRR and PYD domains-containing pro... 44 0.002 AK314998_1(AK314998|pid:none) Homo sapiens cDNA, FLJ95925, highl... 44 0.002 AY196362_1(AY196362|pid:none) Mus musculus strain CBA/J MATER pr... 44 0.002 (Q8BKR5) RecName: Full=Leucine-rich repeat-containing protein 68... 43 0.003 BT054229_1(BT054229|pid:none) Zea mays full-length cDNA clone ZM... 43 0.003 EU960259_1(EU960259|pid:none) Zea mays clone 222959 ran GTPase a... 43 0.003 BC163735_1(BC163735|pid:none) Danio rerio zgc:194906, mRNA (cDNA... 43 0.004 AL606804_2(AL606804|pid:none) Human DNA sequence from clone RP11... 43 0.004 CP000587_82(CP000587|pid:none) Ostreococcus lucimarinus CCE9901 ... 43 0.004 AY092033_1(AY092033|pid:none) Homo sapiens NALP3 intermediate is... 43 0.004 AM502254_692(AM502254|pid:none) Leishmania infantum chromosome 36. 42 0.005 DQ060247_1(DQ060247|pid:none) Takifugu rubripes CARD15 mRNA, com... 42 0.005 AY594149_1(AY594149|pid:none) Saguinus oedipus caspase activatio... 42 0.007 AX417214_1(AX417214|pid:none) Sequence 23 from Patent WO0226780. 42 0.007 CT005272_438(CT005272|pid:none) Leishmania major strain Friedlin... 42 0.007 EU344966_1(EU344966|pid:none) Macaca mulatta NLR family pyrin do... 42 0.007 (P59046) RecName: Full=NACHT, LRR and PYD domains-containing pro... 42 0.007 AY116204_1(AY116204|pid:none) Homo sapiens monarch-1 mRNA, compl... 42 0.007 EU340330_1(EU340330|pid:none) Macaca mulatta NLR family pyrin do... 42 0.009 AJ303140_1(AJ303140|pid:none) Homo sapiens NOD2 gene for LRR-con... 42 0.009 (Q53B87) RecName: Full=Nucleotide-binding oligomerization domain... 42 0.009 (Q9HC29) RecName: Full=Nucleotide-binding oligomerization domain... 42 0.009 BX927313_1(BX927313|pid:none) Zebrafish DNA sequence from clone ... 42 0.009 AK298099_1(AK298099|pid:none) Homo sapiens cDNA FLJ59824 complet... 42 0.009 AK084463_1(AK084463|pid:none) Mus musculus 13 days embryo heart ... 41 0.011 AF298548_1(AF298548|pid:none) Homo sapiens caspase recruitment d... 41 0.011 AF111169_4(AF111169|pid:none) Homo sapiens chromosome 14 BAC con... 41 0.011 CP000087_616(CP000087|pid:none) Rickettsia bellii RML369-C, comp... 41 0.011 CP001160_398(CP001160|pid:none) Thalassiosira pseudonana CCMP133... 41 0.011 FN359286_9(FN359286|pid:none) Schistosoma mansoni genome sequenc... 41 0.011 CR954207_82(CR954207|pid:none) Ostreococcus tauri strain OTTH059... 41 0.011 AK147017_1(AK147017|pid:none) Mus musculus 16 days embryo kidney... 41 0.011 AF177170_1(AF177170|pid:none) Mus musculus tropomodulin 2 (Tmod2... 41 0.015 (Q9JKK7) RecName: Full=Tropomodulin-2; AltName: Full=Neuronal tr... 41 0.015 BC102768_1(BC102768|pid:none) Bos taurus ribonuclease/angiogenin... 41 0.015 AF237629_1(AF237629|pid:none) Mus musculus neural tropomodulin N... 41 0.015 AF052427_4(AF052427|pid:none) Trypanosoma cruzi cosmid 2i15 NPK-... 41 0.015 BC154719_1(BC154719|pid:none) Xenopus tropicalis hypothetical pr... 41 0.015 AY116206_1(AY116206|pid:none) Homo sapiens monarch-1 splice form... 40 0.020 AK095460_1(AK095460|pid:none) Homo sapiens cDNA FLJ38141 fis, cl... 40 0.020 AY116207_1(AY116207|pid:none) Homo sapiens monarch-1 splice form... 40 0.020 (O13066) RecName: Full=Ran GTPase-activating protein 1; ... 40 0.020 AY116205_1(AY116205|pid:none) Homo sapiens monarch-1 splice form... 40 0.020 AC005757_1(AC005757|pid:none) Homo sapiens chromosome 19, cosmid... 40 0.020 (O75864) RecName: Full=Leucine-rich repeat-containing protein 68; 40 0.020 BC051787_1(BC051787|pid:none) Homo sapiens NLR family, pyrin dom... 40 0.026 AB023143_1(AB023143|pid:none) Homo sapiens mRNA for KIAA0926 pro... 40 0.026 AF229061_1(AF229061|pid:none) Homo sapiens NAC-gamma splice vari... 40 0.026 AX089765_1(AX089765|pid:none) Sequence 5 from Patent WO0116170. 40 0.026 AB385404_1(AB385404|pid:none) Synthetic construct DNA, clone: pF... 40 0.026 AX089769_1(AX089769|pid:none) Sequence 9 from Patent WO0116170. 40 0.026 AX089771_1(AX089771|pid:none) Sequence 11 from Patent WO0116170. 40 0.026 (Q9C000) RecName: Full=NACHT, LRR and PYD domains-containing pro... 40 0.026 AF229062_1(AF229062|pid:none) Homo sapiens NAC-delta splice vari... 40 0.026 AM438596_2(AM438596|pid:none) Vitis vinifera contig VV78X049162.... 40 0.033 BC134854_1(BC134854|pid:none) Danio rerio si:ch211-81a5.5, mRNA ... 40 0.033 AJ720502_1(AJ720502|pid:none) Gallus gallus mRNA for hypothetica... 40 0.033 FJ687851_1(FJ687851|pid:none) Drosophila melanogaster strain GN0... 40 0.033 FJ687798_1(FJ687798|pid:none) Drosophila melanogaster strain m63... 40 0.033 AF143860_1(AF143860|pid:none) Drosophila melanogaster RanGAP (Sd... 40 0.033 DQ407912_1(DQ407912|pid:none) Ictalurus punctatus clone SCCH11 r... 40 0.033 CP000849_1020(CP000849|pid:none) Rickettsia bellii OSU 85-389, c... 39 0.044 BC043982_1(BC043982|pid:none) Xenopus laevis RAN GTPase activati... 39 0.044 CP000087_439(CP000087|pid:none) Rickettsia bellii RML369-C, comp... 39 0.044 (P10775) RecName: Full=Ribonuclease inhibitor; AltName: Full=Rib... 39 0.044 BC054654_1(BC054654|pid:none) Danio rerio Ran GTPase activating ... 39 0.044 BC047163_1(BC047163|pid:none) Xenopus laevis tropomodulin 3, mRN... 39 0.044 M36717_1(M36717|pid:none) Human ribonuclease/angiogenin inhibito... 39 0.044 M58700_1(M58700|pid:none) Pig ribonuclease inhibitor (RI) mRNA, ... 39 0.044 (P13489) RecName: Full=Ribonuclease inhibitor; AltName: Full=Rib... 39 0.044 BC134204_1(BC134204|pid:none) Danio rerio similar to LOC496076 p... 39 0.044 BC126016_1(BC126016|pid:none) Xenopus laevis cDNA clone MGC:1547... 39 0.044 AE014134_1176(AE014134|pid:none) Drosophila melanogaster chromos... 39 0.057 CP001324_560(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 39 0.057 AE014134_1175(AE014134|pid:none) Drosophila melanogaster chromos... 39 0.057 AB384760_1(AB384760|pid:none) Synthetic construct DNA, clone: pF... 39 0.057 (Q9LE82) RecName: Full=RAN GTPase-activating protein 1; ... 39 0.074 AY364009_1(AY364009|pid:none) Mus musculus NALP9A mRNA, complete... 39 0.074 (Q647I9) RecName: Full=NACHT, LRR and PYD domains-containing pro... 38 0.097 (Q86W25) RecName: Full=NACHT, LRR and PYD domains-containing pro... 38 0.097 CR954204_218(CR954204|pid:none) Ostreococcus tauri strain OTTH05... 38 0.097 AC098833_9(AC098833|pid:none) Oryza sativa (japonica cultivar-gr... 38 0.13 CP000117_1490(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 38 0.13 (Q8CIM1) RecName: Full=Leucine-rich repeat-containing protein 45... 38 0.13 AF214560_1(AF214560|pid:none) Arabidopsis thaliana RAN GTPase ac... 38 0.13 AK125722_1(AK125722|pid:none) Homo sapiens cDNA FLJ43734 fis, cl... 38 0.13 AF231021_1(AF231021|pid:none) Homo sapiens leucine-rich-repeat p... 38 0.13 AF111710_4(AF111710|pid:none) Oryza sativa subsp. indica putativ... 38 0.13 Z75539_5(Z75539|pid:none) Caenorhabditis elegans Cosmid F28C1, c... 37 0.17 AB178009_1(AB178009|pid:none) Ralstonia solanacearum lrpA, lrpB ... 37 0.17 CT005244_15(CT005244|pid:none) Leishmania major strain Friedlin,... 37 0.17 BX927329_2(BX927329|pid:none) Zebrafish DNA sequence from clone ... 37 0.17 AE017342_11(AE017342|pid:none) Cryptococcus neoformans var. neof... 37 0.17 C89243(C89243) protein F28C1.3 [imported] - Caenorhabditis elega... 37 0.17 CU694407_5(CU694407|pid:none) Ralstonia solanacearum strain MolK... 37 0.17 CP000025_1567(CP000025|pid:none) Campylobacter jejuni RM1221, co... 37 0.28 AC092556_19(AC092556|pid:none) Oryza sativa chromosome 3 BAC OSJ... 37 0.28 AB178024_1(AB178024|pid:none) Ralstonia solanacearum lrpG gene f... 37 0.28 CU695238_398(CU695238|pid:none) Ralstonia solanacearum strain Mo... 37 0.28 CU914168_1295(CU914168|pid:none) Ralstonia solanacearum strain I... 37 0.28 AY596199_1(AY596199|pid:none) Mus musculus NALP-iota (Nalp-iota)... 36 0.37 AM494967_16(AM494967|pid:none) Leishmania braziliensis chromosom... 36 0.37 AM910995_453(AM910995|pid:none) Plasmodium knowlesi strain H chr... 36 0.37 AB016874_3(AB016874|pid:none) Arabidopsis thaliana genomic DNA, ... 36 0.37 AK314533_1(AK314533|pid:none) Homo sapiens cDNA, FLJ95355, highl... 36 0.37 DQ151357_1(DQ151357|pid:none) Petromyzon marinus clone T.E6 vari... 36 0.48 (Q9M651) RecName: Full=RAN GTPase-activating protein 2; ... 36 0.48 AK136247_1(AK136247|pid:none) Mus musculus in vitro fertilized e... 36 0.48 (Q8N4P6) RecName: Full=Leucine-rich repeat-containing protein C1... 36 0.48 BC153283_1(BC153283|pid:none) Bos taurus chromosome 1 open readi... 36 0.48 CP001037_1134(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 36 0.48 AY596195_1(AY596195|pid:none) Mus musculus NALP-beta (Nalp-beta)... 36 0.48 AK057446_1(AK057446|pid:none) Homo sapiens cDNA FLJ32884 fis, cl... 36 0.48 CP000962_1769(CP000962|pid:none) Clostridium botulinum A3 str. L... 35 0.63 AM494942_15(AM494942|pid:none) Leishmania braziliensis chromosom... 35 0.63 AB178025_1(AB178025|pid:none) Ralstonia solanacearum lrpH gene f... 35 0.63 AC114263_20(AC114263|pid:none) Dictyostelium discoideum chromoso... 35 0.63 AL035681_7(AL035681|pid:none) Human DNA sequence from clone RP4-... 35 0.63 CP000728_1668(CP000728|pid:none) Clostridium botulinum F str. La... 35 0.63 AM412317_1767(AM412317|pid:none) Clostridium botulinum A str. AT... 35 0.63 FN392322_748(FN392322|pid:none) Pichia pastoris GS115 chromosome... 35 0.63 AM502250_373(AM502250|pid:none) Leishmania infantum chromosome 32. 35 0.63 (Q96CN5) RecName: Full=Leucine-rich repeat-containing protein 45... 35 0.63 AC091701_41(AC091701|pid:none) Trypanosoma brucei chromosome 8 c... 35 0.63 AK029938_1(AK029938|pid:none) Mus musculus adult male testis cDN... 35 0.63 AP002522_21(AP002522|pid:none) Oryza sativa Japonica Group genom... 35 0.63 AM485540_1(AM485540|pid:none) Vitis vinifera contig VV78X111537.... 35 0.63 EF613347_1(EF613347|pid:none) Danio rerio NOD-like receptor C mR... 35 0.82 AK088768_1(AK088768|pid:none) Mus musculus 2 days neonate thymus... 35 0.82 CP000939_1706(CP000939|pid:none) Clostridium botulinum B1 str. O... 35 0.82 CR860703_1(CR860703|pid:none) Pongo abelii mRNA; cDNA DKFZp459P1... 35 0.82 BC082056_1(BC082056|pid:none) Rattus norvegicus RAN GTPase activ... 35 0.82 AK095748_1(AK095748|pid:none) Homo sapiens cDNA FLJ38429 fis, cl... 35 0.82 (P28289) RecName: Full=Tropomodulin-1; AltName: Full=Erythrocyte... 35 0.82 CP000087_1029(CP000087|pid:none) Rickettsia bellii RML369-C, com... 35 0.82 (P46061) RecName: Full=Ran GTPase-activating protein 1; ... 35 0.82 AM494969_345(AM494969|pid:none) Leishmania braziliensis chromoso... 35 0.82 CP000849_411(CP000849|pid:none) Rickettsia bellii OSU 85-389, co... 35 0.82 AB072759_1(AB072759|pid:none) Macaca fascicularis testis cDNA cl... 35 1.1 AX663294_1(AX663294|pid:none) Sequence 1 from Patent WO02061086. 35 1.1 AX088208_1(AX088208|pid:none) Sequence 3 from Patent WO0114564. 35 1.1 CP001634_404(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, co... 35 1.1 AB052132_1(AB052132|pid:none) Gallus gallus E-Tmod mRNA for trop... 34 1.4 FJ009082_1(FJ009082|pid:none) Homo sapiens CARMIL1a (LRRC16A) mR... 34 1.4 BX927173_1(BX927173|pid:none) Zebrafish DNA sequence from clone ... 34 1.4 BC098927_1(BC098927|pid:none) Rattus norvegicus similar to chrom... 34 1.4 AY360472_1(AY360472|pid:none) Mus musculus NALP9c mRNA, complete... 34 1.4 CT009716_2(CT009716|pid:none) Zebrafish DNA sequence from clone ... 34 1.4 BC169296_1(BC169296|pid:none) Synthetic construct Homo sapiens c... 34 1.8 DQ631800_1(DQ631800|pid:none) Rattus norvegicus dual angiotensin... 34 1.8 BC081475_1(BC081475|pid:none) Danio rerio zgc:103424, mRNA (cDNA... 34 1.8 AK090431_1(AK090431|pid:none) Homo sapiens mRNA for FLJ00348 pro... 34 1.8 M85183_1(M85183|pid:none) Rattus norvegicus angiotensin/vasopres... 34 1.8 FJ004844_1(FJ004844|pid:none) Ictalurus punctatus NOD1 receptor ... 34 1.8 AM999887_227(AM999887|pid:none) Wolbachia endosymbiont of Culex ... 34 1.8 AD1822(AD1822) leucine-rich-repeat protein [imported] - Nostoc s... 34 1.8 CR861203_1(CR861203|pid:none) Pongo abelii mRNA; cDNA DKFZp459F0... 34 1.8 (P46060) RecName: Full=Ran GTPase-activating protein 1; ... 34 1.8 AB058738_1(AB058738|pid:none) Homo sapiens mRNA for KIAA1835 pro... 34 1.8 AM494963_52(AM494963|pid:none) Leishmania braziliensis chromosom... 33 2.4 CT005265_51(CT005265|pid:none) Leishmania major strain Friedlin,... 33 2.4 CT005269_332(CT005269|pid:none) Leishmania major strain Friedlin... 33 2.4 CP001083_1873(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 33 2.4 AC159408_54(AC159408|pid:none) Trypanosoma brucei chromosome 7 c... 33 2.4 AJ720646_1(AJ720646|pid:none) Gallus gallus mRNA for hypothetica... 33 2.4 AC116668_42(AC116668|pid:none) Trypanosoma brucei chromosome 5 c... 33 2.4 CP000087_408(CP000087|pid:none) Rickettsia bellii RML369-C, comp... 33 2.4 CR628336_1010(CR628336|pid:none) Legionella pneumophila str. Par... 33 2.4 AL845526_3(AL845526|pid:none) Zebrafish DNA sequence from clone ... 33 3.1 EU117219_1(EU117219|pid:none) Halocynthia roretzi tropomodulin m... 33 3.1 BC166169_1(BC166169|pid:none) Xenopus tropicalis hypothetical pr... 33 3.1 CR760007_1(CR760007|pid:none) Xenopus tropicalis finished cDNA, ... 33 3.1 BC161940_1(BC161940|pid:none) Rattus norvegicus similar to leuci... 33 3.1 AK043591_1(AK043591|pid:none) Mus musculus 10 days neonate corte... 33 3.1 AY355343_1(AY355343|pid:none) Mus musculus NALP6 mRNA, complete ... 33 3.1 AY437876_1(AY437876|pid:none) Mus musculus CARMIL mRNA, complete... 33 3.1 AB026654_9(AB026654|pid:none) Arabidopsis thaliana genomic DNA, ... 33 3.1 (Q6EDY6) RecName: Full=Leucine-rich repeat-containing protein 16... 33 3.1 CP000849_250(CP000849|pid:none) Rickettsia bellii OSU 85-389, co... 33 3.1 AJ579629_1(AJ579629|pid:none) Arabidopsis thaliana partial mRNA,... 33 3.1 (Q6Q4D0) RecName: Full=Protein BRUSHY 1; AltName: Full=Protein T... 33 3.1 CP000087_1186(CP000087|pid:none) Rickettsia bellii RML369-C, com... 33 3.1 BC013519_1(BC013519|pid:none) Mus musculus NLR family, pyrin dom... 33 3.1 AL513217_2(AL513217|pid:none) Human DNA sequence from clone RP11... 33 4.1 (P29536) RecName: Full=Leiomodin-1; AltName: Full=Leiomodin, mus... 33 4.1 BT059375_1(BT059375|pid:none) Salmo salar clone ssal-rgf-529-208... 33 4.1 AF246990_1(AF246990|pid:none) Chlamydomonas reinhardtii flagella... 33 4.1 AK303524_1(AK303524|pid:none) Homo sapiens cDNA FLJ61018 complet... 33 4.1 AK304700_1(AK304700|pid:none) Homo sapiens cDNA FLJ54257 complet... 33 4.1 CP000675_1037(CP000675|pid:none) Legionella pneumophila str. Cor... 33 4.1 AK295824_1(AK295824|pid:none) Homo sapiens cDNA FLJ55689 complet... 33 4.1 AM502244_50(AM502244|pid:none) Leishmania infantum chromosome 26. 33 4.1 AB071044_1(AB071044|pid:none) Macaca fascicularis testis cDNA cl... 33 4.1 AF321233_1(AF321233|pid:none) Mus musculus strain 129/SvJ chromo... 33 4.1 AY160388_1(AY160388|pid:none) Mus musculus SM/J NOD2 (Nod2) gene... 32 5.3 BC052862_1(BC052862|pid:none) Mus musculus RAN GTPase activating... 32 5.3 AY160258_1(AY160258|pid:none) Mus musculus domesticus WSB/Ei NOD... 32 5.3 T02764(T02764) myosin-I binding protein 125 - Acanthamoeba caste... 32 5.3 AK089843_1(AK089843|pid:none) Mus musculus activated spleen cDNA... 32 5.3 AY160238_1(AY160238|pid:none) Mus musculus musculus PWK/Ph NOD2 ... 32 5.3 AY160308_1(AY160308|pid:none) Mus musculus FL/1Re NOD2 (Nod2) ge... 32 5.3 BC044774_1(BC044774|pid:none) Mus musculus nucleotide-binding ol... 32 5.3 AY160288_1(AY160288|pid:none) Mus musculus SOD1/Ei NOD2 (Nod2) g... 32 5.3 CT005252_91(CT005252|pid:none) Leishmania major strain Friedlin,... 32 5.3 S18732(S18732;S26815)autoantigen, 64K - human 32 5.3 AM502239_8(AM502239|pid:none) Leishmania infantum chromosome 21. 32 5.3 AY160338_1(AY160338|pid:none) Mus musculus SWR/J NOD2 (Nod2) gen... 32 5.3 (Q8K3Z0) RecName: Full=Nucleotide-binding oligomerization domain... 32 5.3 CP001393_651(CP001393|pid:none) Anaerocellum thermophilum DSM 67... 32 5.3 FN357311_46(FN357311|pid:none) Schistosoma mansoni genome sequen... 32 5.3 CP001102_418(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 32 7.0 BT044817_1(BT044817|pid:none) Salmo salar clone ssal-rgf-504-229... 32 7.0 CP001615_2535(CP001615|pid:none) Exiguobacterium sp. AT1b, compl... 32 7.0 AY394934_1(AY394934|pid:none) Danio rerio clone RK044A2H10 hypot... 32 9.1 CP000361_516(CP000361|pid:none) Arcobacter butzleri RM4018, comp... 32 9.1 AL845526_4(AL845526|pid:none) Zebrafish DNA sequence from clone ... 32 9.1 EU344970_1(EU344970|pid:none) Macaca mulatta NLR family pyrin do... 32 9.1 CR628337_1020(CR628337|pid:none) Legionella pneumophila str. Len... 32 9.1 EU340327_1(EU340327|pid:none) Macaca mulatta NLR family pyrin do... 32 9.1
>BX908798_1341(BX908798|pid:none) Parachlamydia-related symbiont UWE25, complete genome. Length = 1764
Score = 71.2 bits (173), Expect = 1e-11 Identities = 46/130 (35%), Positives = 71/130 (54%), Gaps = 1/130 (0%) Frame = +3
Query: 3 ISNNDFYEKAVD-IAESLQYNKSITSFNLSHTKCSNLIGRVLAKSLCINHTLKKLILSHT 179 + NN +K + IA++L N ++ + L + + S + L +SL N TLK + L+ Sbjct: 1421 LGNNQISDKGTEAIAQALASNTTLETLWLDNNQISFKGVKALVQSLAFNTTLKVIHLNSN 1480
Query: 180 KMSCAGIVEFAQGLKENKIQLESLNLDDTDLQDKGATEIGEAIRSNTHLTHLYLNSNSIL 359 K+S G AQ L N L+ L+L + + DKG EIG+A+ NT L LYL +N I Sbjct: 1481 KISDEGAEAIAQALASNTT-LKILDLGNNQISDKGGKEIGKALAFNTVLRRLYLRNNQIS 1539
Query: 360 SSGAKSIGKA 389 GA++I +A Sbjct: 1540 DEGAEAIAQA 1549
Score = 67.0 bits (162), Expect = 2e-10 Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 1/130 (0%) Frame = +3
Query: 3 ISNNDFYEKAVD-IAESLQYNKSITSFNLSHTKCSNLIGRVLAKSLCINHTLKKLILSHT 179 + NN K V + +SL N + + +L+ + SN LA++L N L+++ L+ Sbjct: 1561 LDNNQISFKGVKALVQSLASNTVLENLSLNGNQISNKGMEALAQALASNRKLREISLNGN 1620
Query: 180 KMSCAGIVEFAQGLKENKIQLESLNLDDTDLQDKGATEIGEAIRSNTHLTHLYLNSNSIL 359 ++S G+ FA+ L N L+ L+L + DKGA + +A+ SNT L LYL N I Sbjct: 1621 QISDEGMEAFARALTSNTA-LKVLHLGSNQISDKGAGALAQALASNTALRELYLGDNQIN 1679
Query: 360 SSGAKSIGKA 389 GA++I +A Sbjct: 1680 DKGAETIAQA 1689
Score = 64.3 bits (155), Expect = 1e-09 Identities = 41/128 (32%), Positives = 70/128 (54%) Frame = +3
Query: 6 SNNDFYEKAVDIAESLQYNKSITSFNLSHTKCSNLIGRVLAKSLCINHTLKKLILSHTKM 185 SN E A IA++L N ++ +L + + S+ G+ + K+L N L++L L + ++ Sbjct: 1479 SNKISDEGAEAIAQALASNTTLKILDLGNNQISDKGGKEIGKALAFNTVLRRLYLRNNQI 1538
Query: 186 SCAGIVEFAQGLKENKIQLESLNLDDTDLQDKGATEIGEAIRSNTHLTHLYLNSNSILSS 365 S G AQ L N LE+L LD+ + KG + +++ SNT L +L LN N I + Sbjct: 1539 SDEGAEAIAQALASNTT-LETLWLDNNQISFKGVKALVQSLASNTVLENLSLNGNQISNK 1597
Query: 366 GAKSIGKA 389 G +++ +A Sbjct: 1598 GMEALAQA 1605
Score = 62.8 bits (151), Expect = 4e-09 Identities = 40/119 (33%), Positives = 62/119 (52%) Frame = +3
Query: 24 EKAVDIAESLQYNKSITSFNLSHTKCSNLIGRVLAKSLCINHTLKKLILSHTKMSCAGIV 203 ++A IA +L N ++ S L + + S+ A++L N TLK L L + ++S G Sbjct: 1345 KEAEIIANALALNTALRSLRLQNNQISDRGAEAFARALASNATLKALWLDNNQISNEGAE 1404
Query: 204 EFAQGLKENKIQLESLNLDDTDLQDKGATEIGEAIRSNTHLTHLYLNSNSILSSGAKSI 380 AQ L N L L L + + DKG I +A+ SNT L L+L++N I G K++ Sbjct: 1405 AIAQALASNTA-LRELYLGNNQISDKGTEAIAQALASNTTLETLWLDNNQISFKGVKAL 1462
Score = 62.4 bits (150), Expect = 5e-09 Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 1/130 (0%) Frame = +3
Query: 3 ISNNDFYEKAVD-IAESLQYNKSITSFNLSHTKCSNLIGRVLAKSLCINHTLKKLILSHT 179 ++ N K ++ +A++L N+ + +L+ + S+ A++L N LK L L Sbjct: 1589 LNGNQISNKGMEALAQALASNRKLREISLNGNQISDEGMEAFARALTSNTALKVLHLGSN 1648
Query: 180 KMSCAGIVEFAQGLKENKIQLESLNLDDTDLQDKGATEIGEAIRSNTHLTHLYLNSNSIL 359 ++S G AQ L N L L L D + DKGA I +A SNT L L L N I Sbjct: 1649 QISDKGAGALAQALASNTA-LRELYLGDNQINDKGAETIAQAFASNTKLETLSLKGNQIS 1707
Query: 360 SSGAKSIGKA 389 GAK+I +A Sbjct: 1708 DEGAKAIAQA 1717
Score = 58.5 bits (140), Expect = 7e-08 Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 1/130 (0%) Frame = +3
Query: 3 ISNNDFYEKAVD-IAESLQYNKSITSFNLSHTKCSNLIGRVLAKSLCINHTLKKLILSHT 179 ++ N ++ ++ A +L N ++ +L + S+ LA++L N L++L L Sbjct: 1617 LNGNQISDEGMEAFARALTSNTALKVLHLGSNQISDKGAGALAQALASNTALRELYLGDN 1676
Query: 180 KMSCAGIVEFAQGLKENKIQLESLNLDDTDLQDKGATEIGEAIRSNTHLTHLYLNSNSIL 359 +++ G AQ N +LE+L+L + D+GA I +A SNT L L L N I Sbjct: 1677 QINDKGAETIAQAFASNT-KLETLSLKGNQISDEGAKAIAQAFASNTKLETLSLRGNLIS 1735
Query: 360 SSGAKSIGKA 389 GAK+I +A Sbjct: 1736 DEGAKAIAQA 1745
Score = 58.2 bits (139), Expect = 9e-08 Identities = 32/90 (35%), Positives = 53/90 (58%) Frame = +3
Query: 120 VLAKSLCINHTLKKLILSHTKMSCAGIVEFAQGLKENKIQLESLNLDDTDLQDKGATEIG 299 ++A +L +N L+ L L + ++S G FA+ L N L++L LD+ + ++GA I Sbjct: 1349 IIANALALNTALRSLRLQNNQISDRGAEAFARALASNAT-LKALWLDNNQISNEGAEAIA 1407
Query: 300 EAIRSNTHLTHLYLNSNSILSSGAKSIGKA 389 +A+ SNT L LYL +N I G ++I +A Sbjct: 1408 QALASNTALRELYLGNNQISDKGTEAIAQA 1437
Score = 48.9 bits (115), Expect = 6e-05 Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Frame = +3
Query: 3 ISNNDFYEKAVD-IAESLQYNKSITSFNLSHTKCSNLIGRVLAKSLCINHTLKKLILSHT 179 + +N +K +A++L N ++ L + ++ +A++ N L+ L L Sbjct: 1645 LGSNQISDKGAGALAQALASNTALRELYLGDNQINDKGAETIAQAFASNTKLETLSLKGN 1704
Query: 180 KMSCAGIVEFAQGLKENKIQLESLNLDDTDLQDKGATEIGEAIRSNTHLTHLYLNSN 350 ++S G AQ N +LE+L+L + D+GA I +A SNT+L +Y N+N Sbjct: 1705 QISDEGAKAIAQAFASNT-KLETLSLRGNLISDEGAKAIAQAFASNTNLKTIYFNNN 1760
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3236559 Number of Hits to DB: 552,427,821 Number of extensions: 10324304 Number of successful extensions: 26091 Number of sequences better than 10.0: 289 Number of HSP's gapped: 25995 Number of HSP's successfully gapped: 497 Length of query: 129 Length of database: 1,051,180,864 Length adjustment: 94 Effective length of query: 35 Effective length of database: 746,944,318 Effective search space: 26143051130 Effective search space used: 26143051130 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 29 (15.8 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |