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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U02210-1
Contig ID Contig-U02210-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U02210-1 (Contig-U02210-1Q) /CSM_Contig/Contig-U02210-1Q.Seq.d
GGAAATCAATTTAAATTCAAGCACTGTTTTTAAAACATGGAAAAAAATAT
TAGACATTCACCAGATTCTACAAAGGAAACTTTTTTTGACTCATCATCAA
GAGAGCAACCCAAATTTACCAACACCTCAATGTGTTCATCCAAATGTTGA
AATATGAATAATATTGATTGCCTAGAATTGTAAATAATATTCTTGCTCTT
GCTATCGCATCTTATTTTAGTTGAATTAAATGGTCCAAATGATAAAGCTT
GTAAATTATTATTTAATATTAATGATAATAGTATAGTATCAACATTTAAT
ATAATCTATAAATCACCATCAATCAAACTAGTATAATTAATTTAAAACAA
GGAGGTTTTTAAATATTATTGGTAAGGATTTCTATTATCCAATTGATAAA
GTTACAATAATTGGTTTGATCTTTTGCATTTTTATTACAATTTGAAATAA
TGGTGGAAACTTTAAAACTTAGACCCAAAATTGATGAAAACTTTTGAAAA
TCAATTCCTTTGGAATCACCATTTCTTGCAACACTAACACTAATAGTAAT
----------ATGAGTTGATGTTTACATTTNCTTTTTACAATTTAAACAA
TTTAATAATAGTAGTGGTGATTGGTTTTGATGTTTATTTCATTTCTTAAA
GAAATTGGCTTGGTTCCAAAAGAAATTATAGAAACTGGGTTCTCTGCTTA
TGACACCATTTAACAAAAGTGCTGAACATTTAAATGTATTATTATGATTT
GGATTAATATCATTGATCTTGGAAAAACCATCAAAGAATCTATTCCAACT
TGGTATCATTAGTTAAAATCATGATAGTATTTAAAGAAATTGAGGTTGAG
AAGTTCGTCCGCCCTGCAAATATTAAACACTGACAACTTAAAAACACTCA
CTATAACCCACAAAAATCATTAAACAATTATTTCAATCACAATTACCACA
ACCAAAATAATAATAATATAATAATTATAATAATAATAATAATACTATTT
TTAGAATCAATTAAACATAGACTTTTCCTTCACAAAGGTGGAGTTTTTAA
TGTCGGTTTATCTCACATAGTTTTGTATATAAAATCACTAACGGTATACC
ACCCAAAGAATCAATAATTGTTTTCAAATAAATTAT
Gap gap included
Contig length 1126
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 4067476
End point 4066328
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U02210
List of clone(s) 

est1=VSF168F,1,551
est2=VSF168Z,552,1128
Translated Amino Acid sequence 
einlnsstvfktwkkildihqilqrklflthhqesnpnlptpqcvhpnvei*iilia*nc
k*yscscyrilf*ln*mvqmiklvnyylilmiiv*yqhli*sinhhqsn*yn*fktrrfl
niigkdfyypidkvtiiglifcifiti*nnggnfkt*tqn**KLLKINSFGITISCNTNT
NSN---

---ELMFTFXFYNLNNLIIVVVIGFDVYFIS*rnwlgskrnyrnwvlcl*hhltkvlni*
myyydld*yh*swknhqriysnlvslvkimivfkeievekfvrpanikh*qlknthynpq
kslnnyfnhnyhnqnnnniiiiiiiiilflesikhrlflhkggvfnvglshivlyikslt
vyhpknq*lfsnkl
Translated Amino Acid sequence (All Frames) 
Frame A:
gnqfkfkhcf*nmeknirhspdstketffdsssreqpkftntsmcsskc*nmnnidclel
*iifllllshlilvelngpndkackllfnindnsivstfniiykspsiklv*li*nkevf
kyyw*gfllsn**synnwfdllhfyynlk*wwkl*nldpklmktfenqflwnhhflqh*h
***---

---ms*clhxlfti*ti****w*lvlmfisflkeiglvpkeiietgfsaydti*qkc*tf
kciimiwiniidlgktikesiptwyh*lks**ylkklrlrsssalqilntdnlktltith
knh*tiisititttkiiii**l*****yyf*nqlnidfsftkveflmsvylt*fci*nh*
ryttqrinncfqiny

Frame B:
einlnsstvfktwkkildihqilqrklflthhqesnpnlptpqcvhpnvei*iilia*nc
k*yscscyrilf*ln*mvqmiklvnyylilmiiv*yqhli*sinhhqsn*yn*fktrrfl
niigkdfyypidkvtiiglifcifiti*nnggnfkt*tqn**KLLKINSFGITISCNTNT
NSN---

---*vdvyixflqfkqfnnssgdwf*clfhflkklawfqkkl*klgsllmtpfnksaehl
nvll*fglislilekpsknlfqlgiis*nhdsi*rn*g*evrppcky*tltt*khsl*pt
kiikqlfqsqlpqpk***ynnynnnnntifrin*t*tfpsqrwsf*crfishsfvykitn
gippkesiivfk*i

Frame C:
ksi*iqalflkhgkky*tftrfykgnff*liikratqiyqhlnvfiqmlkye*y*lpriv
nnilalaiasyfs*ikwsk**sl*iii*y****ysini*ynl*itinqtsiinlkqggf*
illvrisiiqliklq*lv*sfafllqfeimvetlklrpkidenf*ksiplespflatltl
iv---

---ELMFTFXFYNLNNLIIVVVIGFDVYFIS*rnwlgskrnyrnwvlcl*hhltkvlni*
myyydld*yh*swknhqriysnlvslvkimivfkeievekfvrpanikh*qlknthynpq
kslnnyfnhnyhnqnnnniiiiiiiiilflesikhrlflhkggvfnvglshivlyikslt
vyhpknq*lfsnkl
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U02210-1 (Contig-U02210-1Q)
/CSM_Contig/Contig-U02210-1Q.Seq.d
         (1136 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U02210-1 (Contig-U02210-1Q) /CSM_Contig/Conti...  1744  0.0
Contig-U00469-1 (Contig-U00469-1Q) /CSM_Contig/Conti...   246  4e-65
Contig-U14382-1 (Contig-U14382-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U11507-1 (Contig-U11507-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U09686-1 (Contig-U09686-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U07029-1 (Contig-U07029-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U09153-1 (Contig-U09153-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U03612-1 (Contig-U03612-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U14133-1 (Contig-U14133-1Q) /CSM_Contig/Conti...    36  0.080
Contig-U12168-1 (Contig-U12168-1Q) /CSM_Contig/Conti...    36  0.080

>Contig-U02210-1 (Contig-U02210-1Q) /CSM_Contig/Contig-U02210-1Q.Seq.d
          Length = 1136

 Score = 1744 bits (880), Expect = 0.0
 Identities = 941/955 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaaatcaatttaaattcaagcactgtttttaaaacatggnnnnnnntattagacattca 60
           ||||||||||||||||||||||||||||||||||||||||       |||||||||||||
Sbjct: 1   ggaaatcaatttaaattcaagcactgtttttaaaacatggaaaaaaatattagacattca 60

                                                                       
Query: 61  ccagattctacaaaggaaacnnnnnnngactcatcatcaagagagcaacccaaatttacc 120
           ||||||||||||||||||||       |||||||||||||||||||||||||||||||||
Sbjct: 61  ccagattctacaaaggaaactttttttgactcatcatcaagagagcaacccaaatttacc 120

                                                                       
Query: 121 aacacctcaatgtgttcatccaaatgttgaaatatgaataatattgattgcctagaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aacacctcaatgtgttcatccaaatgttgaaatatgaataatattgattgcctagaattg 180

                                                                       
Query: 181 taaataatattcttgctcttgctatcgcatcttattttagttgaattaaatggtccaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taaataatattcttgctcttgctatcgcatcttattttagttgaattaaatggtccaaat 240

                                                                       
Query: 241 gataaagcttgtaaattattatttaatattaatgataatagtatagtatcaacatttaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gataaagcttgtaaattattatttaatattaatgataatagtatagtatcaacatttaat 300

                                                                       
Query: 301 ataatctataaatcaccatcaatcaaactagtataattaatttaaaacaaggaggttttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ataatctataaatcaccatcaatcaaactagtataattaatttaaaacaaggaggttttt 360

                                                                       
Query: 361 aaatattattggtaaggatttctattatccaattgataaagttacaataattggtttgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaatattattggtaaggatttctattatccaattgataaagttacaataattggtttgat 420

                                                                       
Query: 421 cttttgcatttttattacaatttgaaataatggtggaaactttaaaacttagacccaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cttttgcatttttattacaatttgaaataatggtggaaactttaaaacttagacccaaaa 480

                                                                       
Query: 481 ttgatgaaaacttttgaaaatcaattcctttggaatcaccatttcttgcaacactaacac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttgatgaaaacttttgaaaatcaattcctttggaatcaccatttcttgcaacactaacac 540

                                                                       
Query: 541 taatagtaatnnnnnnnnnnatgagttgatgtttacatttnctttttacaatttaaacaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 taatagtaatnnnnnnnnnnatgagttgatgtttacatttnctttttacaatttaaacaa 600

                                                                       
Query: 601 tttaataatagtagtggtgattggttttgatgtttatttcatttcttaaagaaattggct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tttaataatagtagtggtgattggttttgatgtttatttcatttcttaaagaaattggct 660

                                                                       
Query: 661 tggttccaaaagaaattatagaaactgggttctctgcttatgacaccatttaacaaaagt 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tggttccaaaagaaattatagaaactgggttctctgcttatgacaccatttaacaaaagt 720

                                                                       
Query: 721 gctgaacatttaaatgtattattatgatttggattaatatcattgatcttggaaaaacca 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gctgaacatttaaatgtattattatgatttggattaatatcattgatcttggaaaaacca 780

                                                                       
Query: 781 tcaaagaatctattccaacttggtatcattagttaaaatcatgatagtatttaaagaaat 840
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tcaaagaatctattccaacttggtatcattagttaaaatcatgatagtatttaaagaaat 840

                                                                       
Query: 841 tgaggttgagaagttcgtccgccctgcaaatattaaacactgacaacttaaaaacactca 900
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tgaggttgagaagttcgtccgccctgcaaatattaaacactgacaacttaaaaacactca 900

                                                                  
Query: 901 ctataacccacaaaaatcattaaacaattatttcaatcacaattaccacaaccaa 955
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ctataacccacaaaaatcattaaacaattatttcaatcacaattaccacaaccaa 955


 Score =  281 bits (142), Expect = 8e-76
 Identities = 142/142 (100%)
 Strand = Plus / Plus

                                                                        
Query: 995  ctatttttagaatcaattaaacatagacttttccttcacaaaggtggagtttttaatgtc 1054
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995  ctatttttagaatcaattaaacatagacttttccttcacaaaggtggagtttttaatgtc 1054

                                                                        
Query: 1055 ggtttatctcacatagttttgtatataaaatcactaacggtataccacccaaagaatcaa 1114
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 ggtttatctcacatagttttgtatataaaatcactaacggtataccacccaaagaatcaa 1114

                                  
Query: 1115 taattgttttcaaataaattat 1136
            ||||||||||||||||||||||
Sbjct: 1115 taattgttttcaaataaattat 1136


>Contig-U00469-1 (Contig-U00469-1Q) /CSM_Contig/Contig-U00469-1Q.Seq.d
          Length = 1570

 Score =  246 bits (124), Expect = 4e-65
 Identities = 179/195 (91%), Gaps = 8/195 (4%)
 Strand = Plus / Plus

                                                                        
Query: 226  ttaaatggtccaaatgataaagcttgtaaattattatttaatattaatgataatagtata 285
            ||||||||||||||||||||| |||||||||||||||||||||   ||||||||||||||
Sbjct: 1070 ttaaatggtccaaatgataaaacttgtaaattattatttaata---atgataatagtata 1126

                                                                        
Query: 286  gtatcaacatttaatataatctataaatcaccatcaat----caaactagtataattaat 341
            ||||||||||||||| |||| || ||||||||||||||    ||||| ||||||||||||
Sbjct: 1127 gtatcaacatttaatttaatatacaaatcaccatcaattaatcaaaccagtataattaat 1186

                                                                        
Query: 342  ttaaaacaaggaggt-ttttaaatattattggtaaggatttctattatccaattgataaa 400
            ||||||||||||||| ||||||  ||||||||||| ||||||||||||||||||||||||
Sbjct: 1187 ttaaaacaaggaggtattttaacaattattggtaatgatttctattatccaattgataaa 1246

                           
Query: 401  gttacaataattggt 415
            |||||||||||||||
Sbjct: 1247 gttacaataattggt 1261


>Contig-U14382-1 (Contig-U14382-1Q) /CSM_Contig/Contig-U14382-1Q.Seq.d
          Length = 425

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 258 attatttaatattaatgataat 279
           ||||||||||||||||||||||
Sbjct: 265 attatttaatattaatgataat 286


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,716
Number of Sequences: 6905
Number of extensions: 23716
Number of successful extensions: 2862
Number of sequences better than 10.0: 339
length of query: 1136
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1120
effective length of database: 5,564,391
effective search space: 6232117920
effective search space used: 6232117920
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.15
Homology vs DNA 
Query= Contig-U02210-1 (Contig-U02210-1Q) /CSM_Contig/Contig-U02210-1Q.Seq.d
         (1136 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU264815) Dictyostelium discoideum vegetative cDNA clone:VS...   777   0.0    2
(AU264814) Dictyostelium discoideum vegetative cDNA clone:VS...   918   0.0    3
(BJ344555) Dictyostelium discoideum cDNA clone:dda19a20, 3' ...    94   5e-65  4
(AY159036) Dictyostelium discoideum LvsE (lvsE) gene, partia...    88   1e-35  3
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    34   0.001  21
(CG953523) MBEIQ93TF mth2 Medicago truncatula genomic clone ...    36   0.011  3
(AL844509) Plasmodium falciparum chromosome 13.                    40   0.013  16
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    38   0.014  9
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    36   0.023  14
(BX248583) Blochmannia floridanus complete genome.                 36   0.028  18
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    36   0.045  14
(AY160101) Dictyostelium discoideum strain AX4 nucleotide ex...    38   0.048  4
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   0.068  14
(AL034556) Plasmodium falciparum MAL3P5.                           44   0.068  5
(CP000382) Clostridium novyi NT, complete genome.                  32   0.081  20
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    38   0.10   9
(ER333368) 1092344283707 Global-Ocean-Sampling_GS-34-01-01-1...    42   0.10   3
(BA000016) Clostridium perfringens str. 13 DNA, complete gen...    34   0.11   20
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         34   0.12   13
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    36   0.13   18
(AM641524) Entamoeba dispar GSS, clone dispar83c09.p1k.            36   0.15   2
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    36   0.18   21
(CT610825) Danio rerio EST, clone ZF_mu_179i23 5'.                 40   0.18   2
(BX465868) Zebrafish DNA sequence from clone DKEY-42I9 in li...    50   0.19   1
(Z49067) Caenorhabditis elegans Cosmid C44F1.                      50   0.19   1
(EK374233) 1095469431482 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.19   1
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    32   0.30   14
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    40   0.30   7
(AC127450) Rattus norvegicus clone CH230-14F15, *** SEQUENCI...    42   0.34   4
(AC162950) Bos taurus clone CH240-126L2, WORKING DRAFT SEQUE...    34   0.41   2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    30   0.43   15
(AM180355) Clostridium difficile 630 complete genome.              32   0.55   22
(AL111168) Campylobacter jejuni subsp. jejuni NCTC 11168 com...    38   0.55   20
(CE637196) tigr-gss-dog-17000366761015 Dog Library Canis lup...    46   0.59   2
(AC105263) Drosophila melanogaster 3L BAC RP98-48G3 (Roswell...    38   0.59   7
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    34   0.61   15
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771...    30   0.64   9
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       36   0.65   12
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    32   0.67   11
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s...    38   0.68   9
(CP000814) Campylobacter jejuni subsp. jejuni 81116, complet...    38   0.70   21
(AL714005) Zebrafish DNA sequence from clone BUSM1-13F19 in ...    48   0.75   1
(CU694978) H.parasitica DNA sequence from clone HpEmoy2-18A18.     48   0.75   1
(GN007617) Sequence 58 from Patent EP2014669.                      48   0.75   1
(CR383702) Human DNA sequence from clone RP11-503P21 on chro...    48   0.75   1
(AL354763) Human DNA sequence from clone RP11-357L1 on chrom...    48   0.75   1
(AE014305) Homo sapiens chromosome 13q34 schizophrenia regio...    48   0.75   1
(EK409671) 1095505154248 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.75   1
(EJ636287) 1092995401694 Global-Ocean-Sampling_GS-29-01-01-1...    48   0.75   1
(EJ611571) 1092962048527 Global-Ocean-Sampling_GS-29-01-01-1...    48   0.75   1
(CK021025) AGENCOURT_16531064 NIH_MGC_222 Mus musculus cDNA ...    48   0.75   1
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   0.77   10
(CG956451) MBEMR27TR mth2 Medicago truncatula genomic clone ...    40   0.79   2
(CT610826) Danio rerio EST, clone ZF_mu_179i23 3'.                 40   0.80   2
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    32   0.82   22
(AL974313) Zebrafish DNA sequence from clone CH211-281M5.          34   0.86   9
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    30   0.93   11
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    34   0.95   19
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    34   0.95   19
(AM467803) Vitis vinifera contig VV78X003903.5, whole genome...    42   0.99   2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    30   1.0    12
(AM458162) Vitis vinifera contig VV78X149998.13, whole genom...    40   1.1    3
(AX344565) Sequence 16 from Patent WO0200932.                      38   1.2    11
(CP000025) Campylobacter jejuni RM1221, complete genome.           36   1.2    22
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5...    34   1.2    8
(AE017308) Mycoplasma mobile 163K complete genome.                 32   1.3    20
(DX553364) GH_MBb0075I07f GH_MBb Gossypium hirsutum genomic ...    30   1.4    4
(BX000991) Zebrafish DNA sequence from clone CH211-203L7 in ...    36   1.5    2
(AC211068) Solanum lycopersicum chromosome 6 clone C06HBa027...    36   1.5    2
(AC211020) Solanum lycopersicum chromosome 6 clone C06HBa000...    36   1.6    2
(AC005506) Plasmodium falciparum chromosome 12 clone PFYAC35...    38   1.6    9
(CR388181) Zebrafish DNA sequence from clone DKEY-197I8 in l...    44   1.6    2
(BX663517) Zebrafish DNA sequence from clone CH211-145E12 in...    36   1.6    2
(AZ537817) ENTGK66TR Entamoeba histolytica Sheared DNA Entam...    38   1.8    3
(D31785) Pichia canadensis mitochondrial genomic DNA, comple...    44   1.8    5
(BI502095) kt85c08.y1 Strongyloides ratti L2 pAMP1 v1 Chiape...    38   1.9    2
(EK400097) 1095469537529 Global-Ocean-Sampling_GS-31-01-01-1...    36   1.9    3
(CP000361) Arcobacter butzleri RM4018, complete genome.            34   1.9    21
(AC005308) Plasmodium falciparum chromosome 12 clone PFYAC49...    36   2.0    9
(AZ671950) ENTHM58TR Entamoeba histolytica Sheared DNA Entam...    38   2.0    3
(DN682003) CGX21-E07.y1d-s SHGC-CGX Gasterosteus aculeatus c...    32   2.0    2
(CE792357) tigr-gss-dog-17000330896439 Dog Library Canis lup...    36   2.0    2
(FC919331) C16000A04SK PCR Citrus clementina cDNA clone C160...    38   2.0    2
(DB957740) Glycine max cDNA, clone: GMFL02-07-F19, 5'end.          34   2.0    2
(AC193456) Zea mays chromosome 3 clone CH201-400O5; ZMMBBc04...    42   2.1    3
(AC177495) Strongylocentrotus purpuratus clone R3-61O1, WORK...    38   2.1    6
(CQ411286) Sequence 18357 from Patent WO0170979.                   32   2.1    3
(CL330809) CH242_4H14.r CHORI-242 Sus scrofa genomic clone C...    42   2.2    2
(AL928830) Zebrafish DNA sequence from clone CH211-119E16.         34   2.2    10
(AC079462) Homo sapiens X PAC GS1-554N22 (Roswell Park Cance...    40   2.4    4
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    34   2.4    11
(ET988694) CHO_OF198xl01f1.ab1 CHO_OF Nicotiana tabacum geno...    40   2.4    2
(AC179946) Strongylocentrotus purpuratus clone R3-21K21, WOR...    40   2.5    8
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    34   2.5    12
(EB958906) 9694017 ZF35 Danio rerio cDNA clone 3430351, mRNA...    42   2.5    2
(CU326394) Medicago truncatula chromosome 5 clone mth2-12h14...    32   2.5    9
(CR376745) Zebrafish DNA sequence from clone CH211-147K10 in...    38   2.5    5
(AM442115) Vitis vinifera contig VV78X183590.7, whole genome...    36   2.6    3
(FC812050) Sr_pASP6_09i15_SP6 S. ratti mixed stage pAMP Stro...    38   2.6    2
(CQ404902) Sequence 11973 from Patent WO0170979.                   32   2.6    3
(CQ398618) Sequence 5689 from Patent WO0170979.                    32   2.6    3
(DQ927305) Tetrahymena pigmentosa strain UM1060 mitochondrio...    34   2.8    6
(FH097000) CHO_OF3024xf01f1.ab1 CHO_OF3 Nicotiana tabacum ge...    40   2.8    2
(AX458578) Sequence 124 from Patent WO0246454.                     36   2.9    7
(CT041979) Sus scrofa genomic clone CH242-4H14, genomic surv...    42   2.9    2
(BX928758) Zebrafish DNA sequence from clone DKEY-206M15 in ...    46   3.0    1
(BX120000) Zebrafish DNA sequence from clone CH211-214C13 in...    46   3.0    1
(AL929128) Zebrafish DNA sequence from clone CH211-203P17 in...    46   3.0    1
(CU024911) Mouse DNA sequence from clone bMQ-_185N09 on chro...    46   3.0    1
(AC133201) Mus musculus BAC clone RP23-74A8 from chromosome ...    46   3.0    1
(AC132606) Mus musculus BAC clone RP23-434H18 from 8, comple...    46   3.0    1
(AM461460) Vitis vinifera contig VV78X008822.6, whole genome...    46   3.0    1
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ...    46   3.0    1
(CR788309) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   3.0    1
(AC229826) Monodelphis domestica clone VMRC18-481J6, WORKING...    46   3.0    1
(AC220313) Bos taurus clone CH240-369F3, WORKING DRAFT SEQUE...    46   3.0    1
(AC192696) Ornithorhynchus anatinus clone OA_Bb-360J15, WORK...    46   3.0    1
(AC179829) Strongylocentrotus purpuratus clone R3-1012F22, W...    46   3.0    1
(AC005507) Plasmodium falciparum chromosome 12 clone PFYACB8...    46   3.0    1
(EK079786) 1092961092519 Global-Ocean-Sampling_GS-31-01-01-1...    46   3.0    1
(EK056488) 1092960027234 Global-Ocean-Sampling_GS-31-01-01-1...    46   3.0    1
(AM633256) Entamoeba dispar GSS, clone dispar99g07.q1k.            46   3.0    1
(AM633165) Entamoeba dispar GSS, clone dispar98g07.q1k.            46   3.0    1
(CZ764439) OC__Ba0119F09.f OC__Ba Oryza coarctata genomic cl...    46   3.0    1
(CL146910) ISB1-147N19_Sp6.1 ISB1 Xenopus (Silurana) tropica...    46   3.0    1
(BH586252) BOGKH45TF BOGK Brassica oleracea genomic clone BO...    46   3.0    1
(DT928122) BMSB11336 Hematopoietic stem cells Mus musculus c...    46   3.0    1
(CK649308) c.09.D14.5 CM523-7 cassava lambda zap Manihot esc...    46   3.0    1
(CK649241) c.09.D8.5 CM523-7 cassava lambda zap Manihot escu...    46   3.0    1
(CK649240) c.09.D7.5 CM523-7 cassava lambda zap Manihot escu...    46   3.0    1
(CK648297) c.05.M14.5 CM523-7 cassava lambda zap Manihot esc...    46   3.0    1
(CK648171) c.05.C9.5 CM523-7 cassava lambda zap Manihot escu...    46   3.0    1
(CK646402) c.11.D12.5 CM523-7 cassava lambda zap Manihot esc...    46   3.0    1
(CK645936) c.01.K7.5 CM523-7 cassava lambda zap Manihot escu...    46   3.0    1
(FK900506) EST_crog_evm_829266 crog_evm Caligus rogercressey...    46   3.0    1
(CP000727) Clostridium botulinum A str. Hall, complete genome.     46   3.0    1
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    46   3.0    1
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g...    46   3.0    1
(EK149908) 1095456043007 Global-Ocean-Sampling_GS-31-01-01-1...    42   3.0    2
(AF303221) Dictyostelium discoideum tortoise (torA) mRNA, co...    38   3.0    3
(AC202318) Medicago truncatula clone mth2-150o9, WORKING DRA...    32   3.0    8
(FH097075) CHO_OF3024xf01r1.ab1 CHO_OF3 Nicotiana tabacum ge...    40   3.1    2
(FP102007) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   3.7    8
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)...    36   3.8    14
(BX678772) Zebrafish DNA sequence from clone CH211-231N5 in ...    40   3.8    8
(AC232842) Choloepus hoffmanni clone CH281-778F20, WORKING D...    34   3.9    4
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   3.9    16
(AC014910) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    38   4.3    3
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    40   4.3    10
(FM992693) Candida dubliniensis CD36 chromosome 6, complete ...    32   4.3    20
(AC114497) Homo sapiens chromosome 1 clone RP11-568G23, comp...    30   4.7    10
(FP017273) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   4.8    6
(CU467518) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   5.0    12
(U64836) Caenorhabditis elegans cosmid F10G2, complete seque...    38   5.0    5
(CR936358) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    34   5.1    2
(U40455) Human chromosome X cosmid, clones 196B12, 9H11 and ...    40   5.2    4
(AM453862) Vitis vinifera contig VV78X109850.2, whole genome...    36   5.2    3
(CT491433) A BAC library has been constructed from cultivar ...    36   5.2    3
(EK214959) 1095460115605 Global-Ocean-Sampling_GS-31-01-01-1...    34   5.3    3
(AL773508) Mouse DNA sequence from clone RP23-253D15 on chro...    40   5.3    6
(AL732314) Human DNA sequence from clone RP13-465B17 on chro...    34   5.5    2
(AC230983) Bos taurus clone CH240-494K1, WORKING DRAFT SEQUE...    34   5.5    2
(AC220407) Bos taurus clone CH240-359E8, WORKING DRAFT SEQUE...    34   5.5    2
(AC007981) Homo sapiens chromosome 22 clone b291 map 22q11, ...    32   5.5    2
(AC008079) Homo sapiens chromosome 22 clone bac519d21 map 22...    32   5.6    2
(CU468924) Zebrafish DNA sequence from clone DKEY-201I24 in ...    32   5.6    2
(AC013360) Homo sapiens chromosome 22 clone RP11-278E23 map ...    32   5.6    2
(AC023491) Homo sapiens chromosome 22 clone b659m11 map 22q1...    32   5.6    2
(AC007324) Homo sapiens chromosome 22 clone b293 map 22q11, ...    32   5.7    2
(FH136407) CHO_OF3670xm10f1.ab1 CHO_OF3 Nicotiana tabacum ge...    38   5.7    2
(CU861896) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    32   5.7    2
(AC166569) Medicago truncatula clone mth2-139a23, WORKING DR...    36   5.8    4
(AC093213) Homo sapiens chromosome 5 clone CTD-2051A5, WORKI...    40   5.9    3
(AL844506) Plasmodium falciparum chromosome  7.                    34   6.3    16
(AC192072) Medicago truncatula chromosome 2 BAC clone mth2-2...    40   6.4    6
(DQ162947) Phytophthora quercina strain SCRP550 tRNA-Tyr (tr...    36   6.6    2
(AC180315) Strongylocentrotus purpuratus clone R3-3119D02, W...    38   6.8    7
(AC006414) Drosophila melanogaster, chromosome 3R, region 89...    38   6.8    5
(BX510994) Zebrafish DNA sequence from clone CH211-51F10 in ...    30   7.0    10
(AL929239) Zebrafish DNA sequence from clone CH211-112F11 in...    32   7.0    9
(AC151948) Medicago truncatula clone mth2-49j14, WORKING DRA...    38   7.1    6
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co...    38   7.3    16
(DQ162946) Phytophthora quercina strain SCRP549 tRNA-Tyr (tr...    36   7.3    2
(DQ162945) Phytophthora quercina strain SCRP547 tRNA-Tyr (tr...    36   7.3    2
(DQ162944) Phytophthora quercina strain SCRP541 tRNA-Tyr (tr...    36   7.3    2
(BX571770) Zebrafish DNA sequence from clone DKEY-276I5 in l...    34   7.4    7
(EK018339) 1092955254899 Global-Ocean-Sampling_GS-31-01-01-1...    32   7.4    2
(CZ519617) GMW2-78L11a.g1 GMW2 Glycine max genomic, genomic ...    34   7.4    2
(AC206005) Pongo abelii BAC clone CH276-438H24 from chromoso...    34   7.4    8
(EV264866) GLLAN67TF JCVI-SOY1 Glycine max cDNA 5', mRNA seq...    34   7.4    2
(EI473862) PV_GBa0083I23.f PV_GBa Phaseolus vulgaris genomic...    34   7.4    2
(EK039603) 1092959502919 Global-Ocean-Sampling_GS-31-01-01-1...    32   7.4    2
(ED724411) GM_WBb0078L11.r GM_WBb Glycine max genomic clone ...    34   7.5    2
(EK407712) 1095505091640 Global-Ocean-Sampling_GS-31-01-01-1...    34   7.5    2
(AC006204) Homo sapiens PAC clone RP5-1102B4 from 7, complet...    36   7.5    6
(AL442163) Human chromosome 14 DNA sequence BAC R-90P16 of l...    36   7.6    7
(AE013044) Thermoanaerobacter tengcongensis MB4, section 71 ...    44   7.6    2
(AC144728) Medicago truncatula clone mth2-6g7, complete sequ...    34   8.1    7
(AC196616) Colobus guereza clone CH272-474F7, WORKING DRAFT ...    44   8.4    4
(FD770469) Zfi02b_79_F01_C017.b1 cDNA library derived from f...    40   8.4    2
(CR309906) mte1-31A14RM1 BAC end, cultivar Jemalong A17 of M...    36   8.4    2
(AW688628) NF009G07ST1F1000 Developing stem Medicago truncat...    42   8.5    2
(EY321787) CAWX8094.rev CAWX Helobdella robusta Primary Earl...    36   8.6    2
(BX126157) Danio rerio genomic clone DKEY-75J6, genomic surv...    32   8.8    3
(DQ927304) Tetrahymena paravorax strain RP mitochondrion, co...    32   8.9    6
(AC216547) Populus trichocarpa clone POP032-B09, complete se...    36   8.9    5
(AC196903) Colobus guereza clone CH272-64N19, WORKING DRAFT ...    44   8.9    4
(AC012001) Homo sapiens BAC clone RP11-465G21 from 2, comple...    34   9.0    6
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    36   9.1    13
(CG971967) MBEDB13TFC mth2 Medicago truncatula genomic clone...    36   9.2    2
(AC174803) Bos taurus clone CH240-242D16, WORKING DRAFT SEQU...    38   9.2    6
(CU076092) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   9.3    5
(FD770557) Zfi02b_80_F01_C017.g1 cDNA library derived from f...    40   9.3    2
(EY348112) CAWZ16318.rev CAWZ Helobdella robusta Primary Lat...    36   9.4    2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    32   9.5    12
(AE017245) Mycoplasma synoviae 53, complete genome.                30   9.5    21
(EI875185) CAH1-47I5TV CAA1Ba Cicer arietinum genomic clone ...    40   9.7    2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    32   9.7    16
(EJ995594) 1093023084930 Global-Ocean-Sampling_GS-30-02-01-1...    40   9.8    2
(EK033585) 1092957901801 Global-Ocean-Sampling_GS-31-01-01-1...    42   10.0   2

>(AU264815) Dictyostelium discoideum vegetative cDNA clone:VSF168,
           3' end single read.
          Length = 577

 Score =  777 bits (392), Expect(2) = 0.0
 Identities = 395/395 (100%)
 Strand = Plus / Plus


Query: 561 atgagttgatgtttacatttnctttttacaatttaaacaatttaataatagtagtggtga 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgagttgatgtttacatttnctttttacaatttaaacaatttaataatagtagtggtga 60


Query: 621 ttggttttgatgtttatttcatttcttaaagaaattggcttggttccaaaagaaattata 680
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttggttttgatgtttatttcatttcttaaagaaattggcttggttccaaaagaaattata 120


Query: 681 gaaactgggttctctgcttatgacaccatttaacaaaagtgctgaacatttaaatgtatt 740
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaaactgggttctctgcttatgacaccatttaacaaaagtgctgaacatttaaatgtatt 180


Query: 741 attatgatttggattaatatcattgatcttggaaaaaccatcaaagaatctattccaact 800
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attatgatttggattaatatcattgatcttggaaaaaccatcaaagaatctattccaact 240


Query: 801 tggtatcattagttaaaatcatgatagtatttaaagaaattgaggttgagaagttcgtcc 860
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tggtatcattagttaaaatcatgatagtatttaaagaaattgaggttgagaagttcgtcc 300


Query: 861 gccctgcaaatattaaacactgacaacttaaaaacactcactataacccacaaaaatcat 920
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gccctgcaaatattaaacactgacaacttaaaaacactcactataacccacaaaaatcat 360


Query: 921 taaacaattatttcaatcacaattaccacaaccaa 955
           |||||||||||||||||||||||||||||||||||
Sbjct: 361 taaacaattatttcaatcacaattaccacaaccaa 395

 Score =  281 bits (142), Expect(2) = 0.0
 Identities = 142/142 (100%)
 Strand = Plus / Plus


Query: 995  ctatttttagaatcaattaaacatagacttttccttcacaaaggtggagtttttaatgtc 1054
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435  ctatttttagaatcaattaaacatagacttttccttcacaaaggtggagtttttaatgtc 494


Query: 1055 ggtttatctcacatagttttgtatataaaatcactaacggtataccacccaaagaatcaa 1114
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495  ggtttatctcacatagttttgtatataaaatcactaacggtataccacccaaagaatcaa 554


Query: 1115 taattgttttcaaataaattat 1136
            ||||||||||||||||||||||
Sbjct: 555  taattgttttcaaataaattat 576

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,609,593,156
Number of extensions: 103497290
Number of successful extensions: 8844428
Number of sequences better than 10.0: 221
Length of query: 1136
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1112
Effective length of database: 99,340,224,878
Effective search space: 110466330064336
Effective search space used: 110466330064336
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.19
Homology vs Protein 
Query= Contig-U02210-1 (Contig-U02210-1Q) /CSM_Contig/Contig-U02210-1Q.Seq.d
         (1136 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,648,305,760
Number of extensions: 29445176
Number of successful extensions: 50830
Number of sequences better than 10.0: 0
Number of HSP's gapped: 50824
Number of HSP's successfully gapped: 0
Length of query: 378
Length of database: 1,051,180,864
Length adjustment: 130
Effective length of query: 248
Effective length of database: 630,428,194
Effective search space: 156346192112
Effective search space used: 156346192112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.91  gvh: 0.38  alm: 0.27  top: 0.53  tms: 0.07  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.16  leu: 0.16  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	  8.0 %: Golgi
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U02210-1 is end
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0