| Contig-U13374-1 |
| Contig ID |
Contig-U13374-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
868 |
| Chromosome number (1..6, M) |
6 |
| Chromosome length |
3595308 |
| Start point |
397523 |
| End point |
398369 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
16 |
| Number of EST |
17 |
| Link to clone list |
U13374 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.12. 9 |
| Homology vs DNA |
Query= Contig-U13374-1 (Contig-U13374-1Q) /CSM_Contig/Contig-U13374-1Q.Seq.d
(868 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(C84114) Dictyostelium discoideum slug cDNA, clone SSC807. 1338 0.0 1
(AU060881) Dictyostelium discoideum slug cDNA, clone SLB866. 1237 0.0 2
(BJ384663) Dictyostelium discoideum cDNA clone:ddc50d12, 3' ... 1207 0.0 5
(BJ366660) Dictyostelium discoideum cDNA clone:ddc39e21, 5' ... 1172 0.0 3
(BJ385174) Dictyostelium discoideum cDNA clone:ddc54h02, 3' ... 1128 0.0 3
(AU034059) Dictyostelium discoideum slug cDNA, clone SLB866. 1112 0.0 1
(C92421) Dictyostelium discoideum slug cDNA, clone SSE527. 1106 0.0 1
(C91351) Dictyostelium discoideum slug cDNA, clone SSK111. 1088 0.0 1
(C91521) Dictyostelium discoideum slug cDNA, clone SSK385. 1078 0.0 1
(C91979) Dictyostelium discoideum slug cDNA, clone SSC654. 1051 0.0 2
(AU052890) Dictyostelium discoideum slug cDNA, clone SLF275. 983 0.0 1
(C92118) Dictyostelium discoideum slug cDNA, clone SSD113. 971 0.0 1
(AU052804) Dictyostelium discoideum slug cDNA, clone SLF129. 938 0.0 1
(BJ370426) Dictyostelium discoideum cDNA clone:ddc54h02, 5' ... 698 0.0 3
(C92237) Dictyostelium discoideum slug cDNA, clone SSD276. 807 0.0 1
(AU074329) Dictyostelium discoideum slug cDNA, clone SSK385. 365 e-113 2
(AU037795) Dictyostelium discoideum slug cDNA, clone SSE305. 101 4e-17 1
(AU265225) Dictyostelium discoideum vegetative cDNA clone:VS... 38 1e-05 3
(AU266250) Dictyostelium discoideum vegetative cDNA clone:VS... 38 0.055 2
(CD513089) AGENCOURT_14371904 NIH_MGC_179 Homo sapiens cDNA ... 40 0.066 3
(AU265224) Dictyostelium discoideum vegetative cDNA clone:VS... 38 0.077 2
(CI026663) Oryza sativa Japonica Group cDNA, clone: 009-M031... 50 0.14 1
(AP004309) Oryza sativa Japonica Group genomic DNA, chromoso... 48 0.23 2
(CI024276) Oryza sativa Japonica Group cDNA, clone: 009-M005... 36 0.30 2
(AP008213) Oryza sativa (japonica cultivar-group) genomic DN... 48 0.56 1
(AP004380) Oryza sativa Japonica Group genomic DNA, chromoso... 48 0.56 1
(AC223051) Bos taurus clone CH240-431B7, WORKING DRAFT SEQUE... 48 0.56 1
(EJ383886) 1092963787151 Global-Ocean-Sampling_GS-28-01-01-1... 38 0.93 3
(AC141612) Homo sapiens chromosome 16 clone RP11-781N20, WOR... 42 0.93 3
(C92031) Dictyostelium discoideum slug cDNA, clone SSC183. 36 1.1 2
(AC135445) Rattus norvegicus clone CH230-510C5, WORKING DRAF... 44 1.1 2
(CI031598) Oryza sativa Japonica Group cDNA, clone: 009-M089... 36 1.1 2
(CI017783) Oryza sativa Japonica Group cDNA, clone: 007-M034... 36 1.2 2
(CU466535) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 1.3 3
(AE015927) Clostridium tetani E88, complete genome. 34 2.1 19
(BX005400) Zebrafish DNA sequence from clone CH211-203C7. 46 2.2 1
(AC009606) Arabidopsis thaliana chromosome III BAC F22F7 gen... 46 2.2 1
(EA143966) Sequence 8281 from patent US 7214786. 46 2.2 1
(AL109932) Human DNA sequence from clone RP4-770C6 on chromo... 46 2.2 1
(AC157685) Xenopus tropicalis clone ISB1-165O14, WORKING DRA... 46 2.2 1
(AC155071) Bos taurus clone CH240-4J5, WORKING DRAFT SEQUENC... 46 2.2 1
(AC151429) Aotus nancymaae clone CH258-374B8, WORKING DRAFT ... 46 2.2 1
(AC140714) Homo sapiens chromosome 16 clone RP11-772C15, WOR... 46 2.2 1
(AC219556) Bos taurus clone CH240-329P13, WORKING DRAFT SEQU... 46 2.2 1
(AC024481) Homo sapiens chromosome 1 clone RP11-13K24 map 1,... 46 2.2 1
(D72202) Caenorhabditis elegans cDNA clone yk91c9 : 3' end, ... 46 2.2 1
(D71880) Caenorhabditis elegans cDNA clone yk83b9 : 3' end, ... 46 2.2 1
(D71864) Caenorhabditis elegans cDNA clone yk82h1 : 3' end, ... 46 2.2 1
(D71203) Caenorhabditis elegans cDNA clone yk63f1 : 3' end, ... 46 2.2 1
(AL821105) Triticum aestivum (mercia) clone H02_O232_plate_1... 46 2.2 1
(EK410978) 1095505168250 Global-Ocean-Sampling_GS-31-01-01-1... 32 2.5 3
(AC009914) Drosophila melanogaster strain y chromosome 2 clo... 42 2.5 4
(CJ493159) Macaca fascicularis mRNA, clone: QtsA-21219, 5' e... 34 2.6 3
(CO417107) Mdfr3011b20.y2 Mdfr Malus x domestica cDNA clone ... 32 3.0 3
(AL354807) Human DNA sequence from clone RP11-522F22 on chro... 40 3.6 7
(AF447045) Plectritis macrocera NADH dehydrogenase subunit F... 38 3.7 2
(CI028901) Oryza sativa Japonica Group cDNA, clone: 009-M058... 36 3.7 2
(CI029690) Oryza sativa Japonica Group cDNA, clone: 009-M067... 36 3.7 2
(AY362472) Valeriana supina NADH dehydrogenase subunit F-lik... 38 3.8 2
(AY362473) Valeriana montana NADH dehydrogenase subunit F-li... 38 3.8 2
(CI038463) Oryza sativa Japonica Group cDNA, clone: 009-M171... 36 3.8 2
(AY362475) Valeriana pyrenaica NADH dehydrogenase subunit F-... 38 3.9 2
(CP000551) Prochlorococcus marinus str. AS9601, complete gen... 40 4.0 17
(AC231730) Monodelphis domestica clone VMRC18-701N15, WORKIN... 44 4.0 3
(CI040042) Oryza sativa Japonica Group cDNA, clone: 009-M189... 36 4.0 2
(CI038247) Oryza sativa Japonica Group cDNA, clone: 009-M168... 36 4.0 2
(CU914663) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 4.1 2
(AC178597) Strongylocentrotus purpuratus clone R3-3021P24, W... 34 4.2 2
(CI206983) Oryza sativa Japonica Group cDNA, clone: 038-M006... 36 4.2 2
(AC025799) Homo sapiens chromosome 15 clone RP11-695J20 map ... 34 4.2 2
(AC106715) Homo sapiens 3 BAC RP11-695J20 (Roswell Park Canc... 34 4.2 2
(CI031133) Oryza sativa Japonica Group cDNA, clone: 009-M083... 36 4.3 2
(CI045878) Oryza sativa Japonica Group cDNA, clone: 011-M088... 42 4.5 2
(CI031892) Oryza sativa Japonica Group cDNA, clone: 009-M092... 36 4.6 2
(CU138528) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 5.2 4
(CJ442075) Macaca fascicularis mRNA, clone: QccE-19572, 5' e... 34 5.6 2
(AC016733) Homo sapiens chromosome 6 clone RP11-390O23, WORK... 36 5.7 5
(DT663210) He_wd2a1_84G12_M13R Heliconius erato wing disk 2 ... 40 5.8 2
(CJ481530) Macaca fascicularis mRNA, clone: QtrA-17223, 5' e... 34 5.9 2
(CR931938) Zebrafish DNA sequence from clone DKEY-115J2 in l... 44 8.7 1
(CR626923) Zebrafish DNA sequence from clone CH211-251P5 in ... 44 8.7 1
(BX284697) Zebrafish DNA sequence from clone DKEY-7M11 in li... 44 8.7 1
(BX088600) Zebrafish DNA sequence from clone DKEY-166M7 in l... 44 8.7 1
(BX005350) Zebrafish DNA sequence from clone DKEY-58C8 in li... 44 8.7 1
(AL935280) Zebrafish DNA sequence from clone DKEY-261J4 in l... 44 8.7 1
(BV635542) S217P62325RF9.T0 Noemie Pan troglodytes troglodyt... 44 8.7 1
(AC141566) Mus musculus BAC clone RP23-89G14 from chromosome... 44 8.7 1
(AC122836) Mus musculus BAC clone RP23-188B13 from 7, comple... 44 8.7 1
(AC102092) Mus musculus chromosome 3, clone RP23-20B1, compl... 44 8.7 1
(BT011954) Arabidopsis thaliana At1g11320 mRNA sequence. 44 8.7 1
(BT006093) Arabidopsis thaliana clone U50001 unknown protein... 44 8.7 1
(BT005740) Arabidopsis thaliana clone RAFL15-47-K23 (R50001)... 44 8.7 1
(AY133747) Arabidopsis thaliana clone U19747 unknown protein... 44 8.7 1
(AY080679) Arabidopsis thaliana unknown protein (At4g11560) ... 44 8.7 1
(AL161532) Arabidopsis thaliana DNA chromosome 4, contig fra... 44 8.7 1
(AL050399) Arabidopsis thaliana DNA chromosome 4, BAC clone ... 44 8.7 1
(AK228636) Arabidopsis thaliana mRNA for hypothetical protei... 44 8.7 1
(AC007259) Arabidopsis thaliana chromosome I BAC T28P6 genom... 44 8.7 1
(AM910995) Plasmodium knowlesi strain H chromosome 13, compl... 44 8.7 1
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s... 44 8.7 1
>(C84114) Dictyostelium discoideum slug cDNA, clone SSC807.
Length = 745
Score = 1338 bits (675), Expect = 0.0
Identities = 677/678 (99%)
Strand = Plus / Plus
Query: 93 aaattcattaccattgggaatgaagtttcaaaatcattacttagagatggatataaagtt 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaattcattaccattgggaatgaagtttcaaaatcattacttagagatggatataaagtt 60
Query: 153 gttgctgttgaaaatccattaacaagtttacaagatgacattaataaaacaagagattta 212
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtngctgttgaaaatccattaacaagtttacaagatgacattaataaaacaagagattta 120
Query: 213 atagatgcacaagatggaaaagttttattagttggccatagttatggcggttctgttata 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atagatgcacaagatggaaaagttttattagttggccatagttatggcggttctgttata 180
Query: 273 actggtgctggtaatcatgataaagttgttggtttagtttacattgccgcatttgctccc 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 actggtgctggtaatcatgataaagttgttggtttagtttacattgccgcatttgctccc 240
Query: 333 gatgaaggtgatagtttatttggtattttcagcagaagagaacaaccaagtggcggtgca 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gatgaaggtgatagtttatttggtattttcagcagaagagaacaaccaagtggcggtgca 300
Query: 393 aatattttaccagcagataaaaaaggattcctttggattaactatgataaatttccagaa 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aatattttaccagcagataaaaaaggattcctttggattaactatgataaatttccagaa 360
Query: 453 tcgttttgtcaagatttgccaaaagatgatgctatggtattgtcaatttctcaaaaacca 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcgttttgtcaagatttgccaaaagatgatgctatggtattgtcaatttctcaaaaacca 420
Query: 513 attcactcaaatggattctctgataaattaaactgtaaaccagcatggagaaccaaacca 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attcactcaaatggattctctgataaattaaactgtaaaccagcatggagaaccaaacca 480
Query: 573 agttggtaccaagtttcaaataatgataatatgattccacctgaaactgaacttgaaatg 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agttggtaccaagtttcaaataatgataatatgattccacctgaaactgaacttgaaatg 540
Query: 633 gcaaaatacataaatgcaaagaaaataattcatctaaatgcttcacatgcttcacttgca 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gcaaaatacataaatgcaaagaaaataattcatctaaatgcttcacatgcttcacttgca 600
Query: 693 tcacatccaaaagaagttttttcattaatcacagaagctgccaattctttaaattcaaaa 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcacatccaaaagaagttttttcattaatcacagaagctgccaattctttaaattcaaaa 660
Query: 753 cttccatcaaattaaatc 770
||||||||||||||||||
Sbjct: 661 cttccatcaaattaaatc 678
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,029,003,690
Number of extensions: 61762952
Number of successful extensions: 5440171
Number of sequences better than 10.0: 133
Length of query: 868
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 844
Effective length of database: 97,308,875,965
Effective search space: 82128691314460
Effective search space used: 82128691314460
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7. 7 |
| Homology vs Protein |
Query= Contig-U13374-1 (Contig-U13374-1Q) /CSM_Contig/Contig-U13374-1Q.Seq.d
(868 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM286415_2692(AM286415|pid:none) Yersinia enterocolitica subsp. ... 209 1e-52
CP000744_2439(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 207 5e-52
CP000076_2829(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 205 2e-51
AY658153_1(AY658153|pid:none) Synthetic construct Peudomonas aer... 202 2e-50
CP001111_1500(CP001111|pid:none) Stenotrophomonas maltophilia R5... 192 9e-48
CP000631_166(CP000631|pid:none) Agrobacterium radiobacter K84 pl... 189 8e-47
AP009552_1975(AP009552|pid:none) Microcystis aeruginosa NIES-843... 167 3e-40
CP000740_267(CP000740|pid:none) Sinorhizobium medicae WSM419 pla... 162 1e-38
AE003851_33(AE003851|pid:none) Xylella fastidiosa 9a5c plasmid p... 162 2e-38
CP001052_1465(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 160 5e-38
CP000133_2378(CP000133|pid:none) Rhizobium etli CFN 42, complete... 160 5e-38
CP000152_523(CP000152|pid:none) Burkholderia sp. 383 chromosome ... 158 2e-37
CP001292_78(CP001292|pid:none) Cyanothece sp. PCC 7424 plasmid p... 157 6e-37
AM260480_1753(AM260480|pid:none) Ralstonia eutropha H16 chromoso... 156 1e-36
CU914168_2085(CU914168|pid:none) Ralstonia solanacearum strain I... 156 1e-36
CP001191_2035(CP001191|pid:none) Rhizobium leguminosarum bv. tri... 156 1e-36
BX572599_243(BX572599|pid:none) Rhodopseudomonas palustris CGA00... 155 2e-36
AL646052_2326(AL646052|pid:none) Ralstonia solanacearum GMI1000 ... 154 5e-36
CP000759_857(CP000759|pid:none) Ochrobactrum anthropi ATCC 49188... 153 6e-36
AM236080_2744(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 153 8e-36
CP000685_3999(CP000685|pid:none) Flavobacterium johnsoniae UW101... 152 1e-35
CP001052_3063(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 151 2e-35
CP001016_3427(CP001016|pid:none) Beijerinckia indica subsp. indi... 151 3e-35
CP001096_2348(CP001096|pid:none) Rhodopseudomonas palustris TIE-... 150 7e-35
BA000012_1048(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 149 2e-34
BA000012_1570(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 148 3e-34
AM039952_3883(AM039952|pid:none) Xanthomonas campestris pv. vesi... 148 3e-34
CP000958_1706(CP000958|pid:none) Burkholderia cenocepacia MC0-3 ... 146 1e-33
AM743169_1154(AM743169|pid:none) Stenotrophomonas maltophilia K2... 145 2e-33
CP000272_1302(CP000272|pid:none) Burkholderia xenovorans LB400 c... 145 2e-33
CP000511_1579(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 144 3e-33
AE007891_8(AE007891|pid:none) Agrobacterium tumefaciens str. C58... 143 6e-33
AM236086_288(AM236086|pid:none) Rhizobium leguminosarum bv. vici... 143 6e-33
AE007872_208(AE007872|pid:none) Agrobacterium tumefaciens str. C... 143 6e-33
BA000040_4181(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 141 3e-32
CP000628_3421(CP000628|pid:none) Agrobacterium radiobacter K84 c... 141 3e-32
CP000480_4934(CP000480|pid:none) Mycobacterium smegmatis str. MC... 139 2e-31
AE007296_9(AE007296|pid:none) Sinorhizobium meliloti 1021 plasmi... 138 2e-31
AP009384_2121(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 138 2e-31
CP000459_337(CP000459|pid:none) Burkholderia cenocepacia HI2424 ... 138 2e-31
BA000040_7741(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 138 3e-31
CP000615_702(CP000615|pid:none) Burkholderia vietnamiensis G4 ch... 138 3e-31
AM747721_542(AM747721|pid:none) Burkholderia cenocepacia J2315 c... 136 1e-30
CP000960_943(CP000960|pid:none) Burkholderia cenocepacia MC0-3 c... 135 1e-30
AM236080_2915(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 135 1e-30
CP001026_338(CP001026|pid:none) Burkholderia ambifaria MC40-6 ch... 135 1e-30
CP001280_2616(CP001280|pid:none) Methylocella silvestris BL2, co... 135 2e-30
CP000269_3330(CP000269|pid:none) Janthinobacterium sp. Marseille... 134 4e-30
AM238663_418(AM238663|pid:none) Streptomyces ambofaciens ATCC 23... 134 4e-30
AM236080_3195(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 134 5e-30
AM039952_2148(AM039952|pid:none) Xanthomonas campestris pv. vesi... 133 9e-30
CP001053_593(CP001053|pid:none) Burkholderia phytofirmans PsJN c... 132 1e-29
AP009153_3413(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DN... 132 1e-29
CP001191_2453(CP001191|pid:none) Rhizobium leguminosarum bv. tri... 132 1e-29
CP001298_1383(CP001298|pid:none) Methylobacterium chloromethanic... 132 1e-29
AE007872_66(AE007872|pid:none) Agrobacterium tumefaciens str. C5... 131 3e-29
CP001074_2828(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 130 4e-29
CP000094_2256(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 130 6e-29
CP000629_2209(CP000629|pid:none) Agrobacterium radiobacter K84 c... 130 7e-29
CP001029_3758(CP001029|pid:none) Methylobacterium populi BJ001, ... 129 2e-28
AM238663_434(AM238663|pid:none) Streptomyces ambofaciens ATCC 23... 129 2e-28
CP001001_4650(CP001001|pid:none) Methylobacterium radiotolerans ... 127 4e-28
AM238663_1208(AM238663|pid:none) Streptomyces ambofaciens ATCC 2... 127 4e-28
CP000133_2687(CP000133|pid:none) Rhizobium etli CFN 42, complete... 127 6e-28
CP000151_844(CP000151|pid:none) Burkholderia sp. 383 chromosome ... 126 1e-27
BA000012_5247(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 125 1e-27
CP000750_2710(CP000750|pid:none) Kineococcus radiotolerans SRS30... 125 2e-27
AL939130_131(AL939130|pid:none) Streptomyces coelicolor A3(2) co... 124 5e-27
CP000301_3139(CP000301|pid:none) Rhodopseudomonas palustris BisB... 122 1e-26
CP001029_1423(CP001029|pid:none) Methylobacterium populi BJ001, ... 122 2e-26
CP001002_148(CP001002|pid:none) Methylobacterium radiotolerans J... 119 1e-25
CP000463_2259(CP000463|pid:none) Rhodopseudomonas palustris BisA... 118 2e-25
CP001636_98(CP001636|pid:none) Variovorax paradoxus S110 chromos... 116 8e-25
AL939104_124(AL939104|pid:none) Streptomyces coelicolor A3(2) co... 112 2e-23
AP008957_5634(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 96 2e-18
CP000431_5749(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 93 1e-17
CP000379_1868(CP000379|pid:none) Burkholderia cenocepacia AU 105... 90 8e-17
AP011117_103(AP011117|pid:none) Rhodococcus opacus B4 plasmid pR... 79 3e-13
AM746676_175(AM746676|pid:none) Sorangium cellulosum 'So ce 56' ... 68 3e-10
AM270059_21(AM270059|pid:none) Aspergillus niger contig An03c018... 66 1e-09
AM746676_695(AM746676|pid:none) Sorangium cellulosum 'So ce 56' ... 66 1e-09
AC074284_4(AC074284|pid:none) Arabidopsis thaliana chromosome 1 ... 63 1e-08
AP009493_888(AP009493|pid:none) Streptomyces griseus subsp. gris... 61 4e-08
AM920436_1732(AM920436|pid:none) Penicillium chrysogenum Wiscons... 58 4e-07
CP000155_2914(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 57 6e-07
AM270218_15(AM270218|pid:none) Aspergillus niger contig An11c001... 56 1e-06
AM430729_2(AM430729|pid:none) Vitis vinifera contig VV78X069031.... 55 2e-06
AM920431_29(AM920431|pid:none) Penicillium chrysogenum Wisconsin... 54 5e-06
CP000254_1257(CP000254|pid:none) Methanospirillum hungatei JF-1,... 54 7e-06
AC008262_19(AC008262|pid:none) Genomic sequence for Arabidopsis ... 53 1e-05
AC018364_18(AC018364|pid:none) Arabidopsis thaliana chromosome 1... 53 1e-05
CP000480_5569(CP000480|pid:none) Mycobacterium smegmatis str. MC... 52 2e-05
BA000040_6614(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 52 3e-05
CP000903_1726(CP000903|pid:none) Bacillus weihenstephanensis KBA... 50 7e-05
AM920431_957(AM920431|pid:none) Penicillium chrysogenum Wisconsi... 50 1e-04
AP008231_2292(AP008231|pid:none) Synechococcus elongatus PCC 630... 49 2e-04
AY088607_1(AY088607|pid:none) Arabidopsis thaliana clone 8327 mR... 49 3e-04
AC015446_19(AC015446|pid:none) Arabidopsis thaliana chromosome I... 49 3e-04
AF150928_7(AF150928|pid:none) Acinetobacter sp. ADP1 BenP (benP)... 48 4e-04
CP001635_1683(CP001635|pid:none) Variovorax paradoxus S110 chrom... 48 4e-04
CP000859_3158(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 48 5e-04
CP001176_1764(CP001176|pid:none) Bacillus cereus B4264, complete... 48 5e-04
CP001032_342(CP001032|pid:none) Opitutus terrae PB90-1, complete... 47 0.001
CP000656_3544(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 47 0.001
CP000248_2851(CP000248|pid:none) Novosphingobium aromaticivorans... 47 0.001
AB270530_108(AB270530|pid:none) Sphingomonas sp. KA1 plasmid pCA... 46 0.001
CP000248_2846(CP000248|pid:none) Novosphingobium aromaticivorans... 46 0.001
CP000512_148(CP000512|pid:none) Acidovorax citrulli AAC00-1, com... 46 0.001
CP000480_3710(CP000480|pid:none) Mycobacterium smegmatis str. MC... 46 0.002
AP006618_3283(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 45 0.003
CP001013_4341(CP001013|pid:none) Leptothrix cholodnii SP-6, comp... 45 0.003
EU966955_1(EU966955|pid:none) Zea mays clone 298462 polyneuridin... 45 0.003
CP001150_568(CP001150|pid:none) Rhodobacter sphaeroides KD131 ch... 45 0.004
CP000699_1002(CP000699|pid:none) Sphingomonas wittichii RW1, com... 45 0.004
AK221404_1(AK221404|pid:none) Arabidopsis thaliana mRNA for puta... 44 0.005
AL049481_3(AL049481|pid:none) Arabidopsis thaliana DNA chromosom... 44 0.005
CP000764_2969(CP000764|pid:none) Bacillus cereus subsp. cytotoxi... 44 0.007
CP000384_2998(CP000384|pid:none) Mycobacterium sp. MCS, complete... 44 0.007
CP000143_836(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 ch... 44 0.007
CP000441_1730(CP000441|pid:none) Burkholderia ambifaria AMMD chr... 44 0.009
CP000494_3570(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 43 0.012
CP000615_485(CP000615|pid:none) Burkholderia vietnamiensis G4 ch... 43 0.012
CP000227_4089(CP000227|pid:none) Bacillus cereus Q1, complete ge... 43 0.016
AE017194_4454(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 43 0.016
AP008957_2106(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 43 0.016
CP000001_4109(CP000001|pid:none) Bacillus cereus E33L, complete ... 43 0.016
AM747721_2845(AM747721|pid:none) Burkholderia cenocepacia J2315 ... 42 0.020
CP000959_1351(CP000959|pid:none) Burkholderia cenocepacia MC0-3 ... 42 0.020
CP000820_3263(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 42 0.020
CP000379_2169(CP000379|pid:none) Burkholderia cenocepacia AU 105... 42 0.020
CP000459_2503(CP000459|pid:none) Burkholderia cenocepacia HI2424... 42 0.020
AM270404_12(AM270404|pid:none) Aspergillus niger contig An18c012... 42 0.035
CU234118_3109(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 42 0.035
CP000927_2382(CP000927|pid:none) Caulobacter sp. K31, complete g... 41 0.045
AM263198_1524(AM263198|pid:none) Listeria welshimeri serovar 6b ... 41 0.045
CP001504_2077(CP001504|pid:none) Burkholderia glumae BGR1 chromo... 41 0.059
AG1263(AG1263) hypothetical protein lmo1511 [imported] - Listeri... 41 0.059
CP000494_6955(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 41 0.059
AE017262_1515(AE017262|pid:none) Listeria monocytogenes str. 4b ... 40 0.077
AF144381_1(AF144381|pid:none) Burkholderia gladioli EstC (estC) ... 40 0.077
CP001341_60(CP001341|pid:none) Arthrobacter chlorophenolicus A6,... 40 0.077
AP007175_347(AP007175|pid:none) Aspergillus oryzae RIB40 genomic... 40 0.10
AC013427_26(AC013427|pid:none) Sequence of BAC T1K7 from Arabido... 40 0.13
AL939119_270(AL939119|pid:none) Streptomyces coelicolor A3(2) co... 40 0.13
AI1625(AI1625) hypothetical protein homolog lin1546 [imported] -... 39 0.17
CP000474_3761(CP000474|pid:none) Arthrobacter aurescens TC1, com... 39 0.17
CP000125_1490(CP000125|pid:none) Burkholderia pseudomallei 1710b... 39 0.17
CP000573_3148(CP000573|pid:none) Burkholderia pseudomallei 1106a... 39 0.17
FJ607245_2(FJ607245|pid:none) Streptomyces sp. KCTC 9047 aminogl... 39 0.17
CP000571_3263(CP000571|pid:none) Burkholderia pseudomallei 668 c... 39 0.22
CP000525_1109(CP000525|pid:none) Burkholderia mallei SAVP1 chrom... 39 0.22
CP000547_2362(CP000547|pid:none) Burkholderia mallei NCTC 10247 ... 39 0.22
AM270048_74(AM270048|pid:none) Aspergillus niger contig An03c007... 39 0.22
CP000011_2015(CP000011|pid:none) Burkholderia mallei ATCC 23344 ... 39 0.22
AC003040_24(AC003040|pid:none) Arabidopsis thaliana chromosome 2... 38 0.38
CP000699_1894(CP000699|pid:none) Sphingomonas wittichii RW1, com... 38 0.50
AP007151_188(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 38 0.50
AP003372_20(AP003372|pid:none) Oryza sativa Japonica Group genom... 38 0.50
BT034389_1(BT034389|pid:none) Zea mays full-length cDNA clone ZM... 38 0.50
(Q9SE93) RecName: Full=Polyneuridine-aldehyde esterase; ... 37 0.65
AM270119_20(AM270119|pid:none) Aspergillus niger contig An07c001... 37 0.65
CP000518_5009(CP000518|pid:none) Mycobacterium sp. KMS, complete... 37 0.65
CP000480_6618(CP000480|pid:none) Mycobacterium smegmatis str. MC... 37 0.65
CP000667_3335(CP000667|pid:none) Salinispora tropica CNB-440, co... 37 0.65
EF610853_1(EF610853|pid:none) Anochetus sp. Mad-01 cytochrome ox... 37 0.66
EF610856_1(EF610856|pid:none) Anochetus sp. Mad-01 cytochrome ox... 37 0.66
EF610849_1(EF610849|pid:none) Anochetus sp. Mad-01 cytochrome ox... 37 0.66
EF610846_1(EF610846|pid:none) Anochetus sp. Mad-01 cytochrome ox... 37 0.66
EF610861_1(EF610861|pid:none) Anochetus sp. Mad-01 cytochrome ox... 37 0.66
CP001197_501(CP001197|pid:none) Desulfovibrio vulgaris str. 'Miy... 37 1.1
AM270396_28(AM270396|pid:none) Aspergillus niger contig An18c003... 37 1.1
CU458896_466(CU458896|pid:none) Mycobacterium abscessus chromoso... 36 1.5
CP000473_5228(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 36 1.5
EF610886_1(EF610886|pid:none) Anochetus sp. Mad-02 cytochrome ox... 36 1.5
EF610895_1(EF610895|pid:none) Anochetus sp. Mad-02 cytochrome ox... 36 1.5
EF610890_1(EF610890|pid:none) Anochetus sp. Mad-02 cytochrome ox... 36 1.5
AE016958_2416(AE016958|pid:none) Mycobacterium avium subsp. para... 36 1.9
CP000264_253(CP000264|pid:none) Jannaschia sp. CCS1, complete ge... 36 1.9
AM270241_87(AM270241|pid:none) Aspergillus niger contig An11c024... 36 1.9
EF610857_1(EF610857|pid:none) Anochetus sp. Mad-01 cytochrome ox... 36 1.9
EF610841_1(EF610841|pid:none) Anochetus sp. Mad-01 cytochrome ox... 36 1.9
AP008207_3581(AP008207|pid:none) Oryza sativa (japonica cultivar... 35 2.5
AM269993_38(AM269993|pid:none) Aspergillus niger contig An01c047... 35 2.5
CP000771_794(CP000771|pid:none) Fervidobacterium nodosum Rt17-B1... 35 3.2
AM920433_311(AM920433|pid:none) Penicillium chrysogenum Wisconsi... 35 3.2
AC003040_25(AC003040|pid:none) Arabidopsis thaliana chromosome 2... 35 3.2
AP003372_18(AP003372|pid:none) Oryza sativa Japonica Group genom... 35 3.2
BT004125_1(BT004125|pid:none) Arabidopsis thaliana clone RAFL15-... 35 3.2
AC003040_20(AC003040|pid:none) Arabidopsis thaliana chromosome 2... 35 3.2
AM436445_1(AM436445|pid:none) Vitis vinifera contig VV78X039249.... 35 4.2
CP001339_3004(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ... 35 4.2
CP000577_2021(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17... 34 5.5
AC003040_22(AC003040|pid:none) Arabidopsis thaliana chromosome 2... 34 5.5
CP000264_4031(CP000264|pid:none) Jannaschia sp. CCS1, complete g... 34 7.2
CP001150_1713(CP001150|pid:none) Rhodobacter sphaeroides KD131 c... 34 7.2
CP000143_1991(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c... 34 7.2
CP000927_4148(CP000927|pid:none) Caulobacter sp. K31, complete g... 34 7.2
AP009493_5620(AP009493|pid:none) Streptomyces griseus subsp. gri... 34 7.2
AM236080_4050(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 34 7.2
DQ414320_1(DQ414320|pid:none) Johanssonia arctica cytochrome c o... 34 7.3
DQ238186_1(DQ238186|pid:none) Mesomyzostoma sp. 2 DL-2005 cytoch... 34 7.3
AC144482_13(AC144482|pid:none) Medicago truncatula clone mth2-10... 33 9.4
CP000712_3862(CP000712|pid:none) Pseudomonas putida F1, complete... 33 9.4
AC136955_15(AC136955|pid:none) Medicago truncatula clone mth2-10... 33 9.4
CP000474_1104(CP000474|pid:none) Arthrobacter aurescens TC1, com... 33 9.4
CP000769_3326(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 33 9.4
>AM286415_2692(AM286415|pid:none) Yersinia enterocolitica subsp.
enterocolitica 8081 complete genome.
Length = 230
Score = 209 bits (531), Expect = 1e-52
Identities = 99/198 (50%), Positives = 143/198 (72%)
Frame = +3
Query: 141 GYKVVAVENPLTSLQDDINKTRDLIDAQDGKVLLVGHSYGGSVITGAGNHDKVVGLVYIA 320
G++V+A++NPLTSL DD+ +T L A G LLVGHSYGG VIT G+ VVG+VY+A
Sbjct: 31 GHRVIAIQNPLTSLADDVERTIKLTTALYGPTLLVGHSYGGMVITQVGHLQNVVGMVYLA 90
Query: 321 AFAPDEGDSLFGIFSRREQPSGGANILPADKKGFLWINYDKFPESFCQDLPKDDAMVLSI 500
AFAPD G+SL ++ R+ P G A I P D GFLWI+ D+F E+ CQD+ + +A+V+++
Sbjct: 91 AFAPDAGESLSSTYALRKPPVGAAYIRP-DDNGFLWIDTDQFHENMCQDIDESEALVMAL 149
Query: 501 SQKPIHSNGFSDKLNCKPAWRTKPSWYQVSNNDNMIPPETELEMAKYINAKKIIHLNASH 680
+QKP+ + F+DK + +PAWR KP WYQ+S D M+P ET+ + AK I A+K++ L +SH
Sbjct: 150 TQKPLAARIFTDK-SAQPAWRVKPCWYQISTEDRMLPVETQRDFAKRIQAQKVVELPSSH 208
Query: 681 ASLASHPKEVFSLITEAA 734
++ SHP+++ LIT+AA
Sbjct: 209 SAHLSHPQQIIDLITDAA 226
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,306,262,754
Number of extensions: 26253965
Number of successful extensions: 69240
Number of sequences better than 10.0: 206
Number of HSP's gapped: 68967
Number of HSP's successfully gapped: 206
Length of query: 289
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 162
Effective length of database: 640,137,871
Effective search space: 103702335102
Effective search space used: 103702335102
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
4 |
| SS (DIR, S) |
8 |
| SH (FL, L) |
0 |
| SF (FL, S) |
1 |
| CH (FL, L) |
3 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |