>Contig-U00581-1 (Contig-U00581-1Q) /CSM_Contig/Contig-U00581-1Q.Seq.d
GATGAACATTATTTTTATTTTCAAAAAAAAAGATAAAATTATAAATTAAA
CTATGGAAAGAGTTGTTTGTTCAGCACCAGGTAAAGTTTTAGTAACAGGT
GGATACTTAGTATTGGATAAAAAATATGACGGTATTGTTTTTACAATTGA
TTCAAGATTTTACACAACAATTGAAGGTTCATTAAAACCAGAATCATCAT
CATCGTCACCATCAAATAATAAAGAAACTTTAACATCAAGTTTTGAAACA
TTAGAATATCTTACAGATATAAATGTAATTTCACCACAATTTCATTCAAG
CCAAACCTATCATATCTATTATAATAAGAGTAATGAAAATAAATCCTATC
AATTGAAACCATTTGGAAATGAAAACTATAGAGAGAACAAATATGTTGAA
AATACAATCATTTATTCACTCATAACCTTATCAGAATATAAAAATCAAAC
TACTGAATCTTTTAATAAATTAATTTCTTCTTATCAATTAATTTCAATT-
---------ATAAACATTTAGATATGGGATTACCAAGAGGATTACATTTA
TTATTAGCAGATGTTAGTATTGGTTCAAATACACCAGTAATGGTTAAAAA
GATATTAGAATGGAGAAAGAATGATCCAACCCTTGCAAATGCAATTTGGA
ATCAATTGGATATTGAAAATACAAATGTTAAACATTGTTTCATTAAATTG
AATCAATTAAGTAAAGAAAATCAGTCACAATATGATAAAGTTTTAAATCA
ATTCGGTAATTTATCACAATCAAATTGGGAATCATCAATTCAAAATAATA
ATAATAATAATAATAATGACAATGATAATAATGAAGATTCATTAATTTAT
AATAATATTGGTAAAACTTTAATTACAATTAGAGAATCATTTTTAAAGAT
AAGATCATTAATGAGAGAAATGGGTAAAATTGCTGATGTACCATTGGAAC
CAATTGAACAAACTGAATTGGCTGATCATACAATGTCAATCAATGGTTGT
ATTGCTGCTGGTGTACCTGGTGCTGGTGGTTTCGATGCTTTATTCGCTAT
CGTTATCACTAATCAAGATGAAATTAAAAACTCTTGGATGAATTGGAAGA
AATGTCAAGTTTTACCTTTAGTTTTAAATGAAAATTCAACCTGGTGTTGC
AATTGATATGTCTCATATTACTCCAAAATTATAAAAATAAAATAAAACCA
AATAAAATAAAATAAAAACCATAAAAATAATCTAATTATTAAAGA

est1=AFK869F,1,500
est2=AFK869Z,501,1250
est3=VSI284Z,776,1243
est4=VSI284F,788,1266
est5=SLF121E,947,1269

mniififkkkdkiin*TMERVVCSAPGKVLVTGGYLVLDKKYDGIVFTIDSRFYTTIEGS
LKPESSSSSPSNNKETLTSSFETLEYLTDINVISPQFHSSQTYHIYYNKSNENKSYQLKP
FGNENYRENKYVENTIIYSLITLSEYKNQTTESFNKLISSYQLISI---

---KHLDMGLPRGLHLLLADVSIGSNTPVMVKKILEWRKNDPTLANAIWNQLDIENTNVK
HCFIKLNQLSKENQSQYDKVLNQFGNLSQSNWESSIQNNNNNNNNDNDNNEDSLIYNNIG
KTLITIRESFLKIRSLMREMGKIADVPLEPIEQTELADHTMSINGCIAAGVPGAGGFDAL
FAIVITNQDEIKNSWMNWKKCQVLPLVLNENSTWCCN*yvsyyskiikik*nqik*nknh
knnliik

Frame A:
dehyfyfqkkr*nyklnygksclfstr*sfsnrwilsig*ki*rycfyn*fkilhnn*rf
iktriiiivtik**rnfnikf*nirisyrykcnfttisfkpnlsyll**e**k*ilsiet
iwk*kl*reqic*kynhlfthnliri*ksny*if**infflsinfn---

---ini*iwdyqedyiyy*qmlvlvqihq*wlkry*ngermiqplqmqfginwilkiqml
nivsln*in*vkkishnmikf*insviyhnqignhqfkiiiiiiimtmiimkih*fiiil
vkl*lqlenhf*r*dh**ekwvkllmyhwnqlnklnwliiqcqsmvvlllvylvlvvsml
yslslslikmklktlg*igrnvkfyl*f*mkiqpgvaidmshitpkl*k*nktk*nkikt
ikii*llk

Frame B:
mniififkkkdkiin*TMERVVCSAPGKVLVTGGYLVLDKKYDGIVFTIDSRFYTTIEGS
LKPESSSSSPSNNKETLTSSFETLEYLTDINVISPQFHSSQTYHIYYNKSNENKSYQLKP
FGNENYRENKYVENTIIYSLITLSEYKNQTTESFNKLISSYQLISI---

---*tfrygitkritfiisrc*ywfkytsng*kdirmeke*snpckcnlesigy*kykc*
tlfh*iesik*rksvti**sfksir*fitiklgiinsk********q****rfinl**yw
*nfnyn*riifkdkiinerng*nc*ctigtn*tn*ig*synvnqwlyccwctwcwwfrcf
iryryh*sr*n*klldeleemssftfsfk*kfnlvlqliclillqnyknkikpnkik*kp
*k*sny*r

Frame C:
*tlflfskkkikl*iklwkelfvqhqvkf**qvdt*ywiknmtvlflqliqdftqqlkvh
*nqnhhhrhhqiikkl*hqvlkh*nilqi*m*fhhnfiqakpiisiiirvmkinpin*nh
lemktiertnmlkiqsfihs*pyqnikikllnllin*fllin*fq---

---KHLDMGLPRGLHLLLADVSIGSNTPVMVKKILEWRKNDPTLANAIWNQLDIENTNVK
HCFIKLNQLSKENQSQYDKVLNQFGNLSQSNWESSIQNNNNNNNNDNDNNEDSLIYNNIG
KTLITIRESFLKIRSLMREMGKIADVPLEPIEQTELADHTMSINGCIAAGVPGAGGFDAL
FAIVITNQDEIKNSWMNWKKCQVLPLVLNENSTWCCN*yvsyyskiikik*nqik*nknh
knnliik

Query= Contig-U00581-1 (Contig-U00581-1Q)
/CSM_Contig/Contig-U00581-1Q.Seq.d
         (1245 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U00581-1 (Contig-U00581-1Q) /CSM_Contig/Conti...  1459  0.0
Contig-U16330-1 (Contig-U16330-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U15624-1 (Contig-U15624-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12657-1 (Contig-U12657-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U03923-1 (Contig-U03923-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U15513-1 (Contig-U15513-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U13669-1 (Contig-U13669-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U12851-1 (Contig-U12851-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U11814-1 (Contig-U11814-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U11680-1 (Contig-U11680-1Q) /CSM_Contig/Conti...    40  0.008

>Contig-U00581-1 (Contig-U00581-1Q) /CSM_Contig/Contig-U00581-1Q.Seq.d
          Length = 1245

 Score = 1459 bits (736), Expect = 0.0
 Identities = 784/793 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatgaacattatttttattttcnnnnnnnnngataaaattataaattaaactatggaaag 60
           ||||||||||||||||||||||         |||||||||||||||||||||||||||||
Sbjct: 1   gatgaacattatttttattttcaaaaaaaaagataaaattataaattaaactatggaaag 60

                                                                       
Query: 61  agttgtttgttcagcaccaggtaaagttttagtaacaggtggatacttagtattggataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agttgtttgttcagcaccaggtaaagttttagtaacaggtggatacttagtattggataa 120

                                                                       
Query: 121 aaaatatgacggtattgtttttacaattgattcaagattttacacaacaattgaaggttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaatatgacggtattgtttttacaattgattcaagattttacacaacaattgaaggttc 180

                                                                       
Query: 181 attaaaaccagaatcatcatcatcgtcaccatcaaataataaagaaactttaacatcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attaaaaccagaatcatcatcatcgtcaccatcaaataataaagaaactttaacatcaag 240

                                                                       
Query: 241 ttttgaaacattagaatatcttacagatataaatgtaatttcaccacaatttcattcaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttttgaaacattagaatatcttacagatataaatgtaatttcaccacaatttcattcaag 300

                                                                       
Query: 301 ccaaacctatcatatctattataataagagtaatgaaaataaatcctatcaattgaaacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccaaacctatcatatctattataataagagtaatgaaaataaatcctatcaattgaaacc 360

                                                                       
Query: 361 atttggaaatgaaaactatagagagaacaaatatgttgaaaatacaatcatttattcact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atttggaaatgaaaactatagagagaacaaatatgttgaaaatacaatcatttattcact 420

                                                                       
Query: 421 cataaccttatcagaatataaaaatcaaactactgaatcttttaataaattaatttcttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cataaccttatcagaatataaaaatcaaactactgaatcttttaataaattaatttcttc 480

                                                                       
Query: 481 ttatcaattaatttcaattnnnnnnnnnnataaacatttagatatgggattaccaagagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttatcaattaatttcaattnnnnnnnnnnataaacatttagatatgggattaccaagagg 540

                                                                       
Query: 541 attacatttattattagcagatgttagtattggttcaaatacaccagtaatggttaaaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 attacatttattattagcagatgttagtattggttcaaatacaccagtaatggttaaaaa 600

                                                                       
Query: 601 gatattagaatggagaaagaatgatccaacccttgcaaatgcaatttggaatcaattgga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gatattagaatggagaaagaatgatccaacccttgcaaatgcaatttggaatcaattgga 660

                                                                       
Query: 661 tattgaaaatacaaatgttaaacattgtttcattaaattgaatcaattaagtaaagaaaa 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tattgaaaatacaaatgttaaacattgtttcattaaattgaatcaattaagtaaagaaaa 720

                                                                       
Query: 721 tcagtcacaatatgataaagttttaaatcaattcggtaatttatcacaatcaaattggga 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tcagtcacaatatgataaagttttaaatcaattcggtaatttatcacaatcaaattggga 780

                        
Query: 781 atcatcaattcaa 793
           |||||||||||||
Sbjct: 781 atcatcaattcaa 793


 Score =  628 bits (317), Expect = e-180
 Identities = 317/317 (100%)
 Strand = Plus / Plus

                                                                        
Query: 858  ttggtaaaactttaattacaattagagaatcatttttaaagataagatcattaatgagag 917
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858  ttggtaaaactttaattacaattagagaatcatttttaaagataagatcattaatgagag 917

                                                                        
Query: 918  aaatgggtaaaattgctgatgtaccattggaaccaattgaacaaactgaattggctgatc 977
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918  aaatgggtaaaattgctgatgtaccattggaaccaattgaacaaactgaattggctgatc 977

                                                                        
Query: 978  atacaatgtcaatcaatggttgtattgctgctggtgtacctggtgctggtggtttcgatg 1037
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978  atacaatgtcaatcaatggttgtattgctgctggtgtacctggtgctggtggtttcgatg 1037

                                                                        
Query: 1038 ctttattcgctatcgttatcactaatcaagatgaaattaaaaactcttggatgaattgga 1097
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 ctttattcgctatcgttatcactaatcaagatgaaattaaaaactcttggatgaattgga 1097

                                                                        
Query: 1098 agaaatgtcaagttttacctttagttttaaatgaaaattcaacctggtgttgcaattgat 1157
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1098 agaaatgtcaagttttacctttagttttaaatgaaaattcaacctggtgttgcaattgat 1157

                             
Query: 1158 atgtctcatattactcc 1174
            |||||||||||||||||
Sbjct: 1158 atgtctcatattactcc 1174


 Score = 32.2 bits (16), Expect = 2.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 1230 atctaattattaaaga 1245
            ||||||||||||||||
Sbjct: 1230 atctaattattaaaga 1245


>Contig-U16330-1 (Contig-U16330-1Q) /CSM_Contig/Contig-U16330-1Q.Seq.d
          Length = 3534

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 732  atgataaagttttaaatcaatt 753
            ||||||||||||||||||||||
Sbjct: 2301 atgataaagttttaaatcaatt 2322


>Contig-U15624-1 (Contig-U15624-1Q) /CSM_Contig/Contig-U15624-1Q.Seq.d
          Length = 3159

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 193  atcatcatcatcgtcaccatc 213
            |||||||||||||||||||||
Sbjct: 2905 atcatcatcatcgtcaccatc 2925


  Database: CSM
    Posted date:  Jun 21, 2004 12:56 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,576
Number of Sequences: 8402
Number of extensions: 37576
Number of successful extensions: 6026
Number of sequences better than 10.0: 561
length of query: 1245
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1229
effective length of database: 7,941,110
effective search space: 9759624190
effective search space used: 9759624190
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U00581-1 (Contig-U00581-1Q) /CSM_Contig/Contig-U00581-1Q.Seq.d
         (1245 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ343297) Dictyostelium discoideum cDNA clone:dda22j18, 3' ...   553   0.0    3
(BJ328021) Dictyostelium discoideum cDNA clone:dda22j18, 5' ...   928   0.0    2
(AU268448) Dictyostelium discoideum vegetative cDNA clone:VS...   628   e-175  1
(AU268449) Dictyostelium discoideum vegetative cDNA clone:VS...   561   e-169  2
(AU052799) Dictyostelium discoideum slug cDNA, clone SLF121.      430   e-130  2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    36   0.002  17
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   0.011  15
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    36   0.014  14
(AC180767) Strongylocentrotus purpuratus clone R3-3022D6, WO...    34   0.019  8
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    36   0.027  21
(AC168503) Strongylocentrotus purpuratus clone R3-3117B4, WO...    36   0.029  7
(AL312007) Tetraodon nigroviridis genome survey sequence T7 ...    52   0.053  1
(AL297516) Tetraodon nigroviridis genome survey sequence T7 ...    52   0.053  1
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    36   0.055  7
(CP000361) Arcobacter butzleri RM4018, complete genome.            38   0.12   19
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    34   0.13   15
(AJ419906) Mycoplasma sp. bovine group 7 gtsA gene, gtsB gen...    40   0.14   2
(EL504819) E03_1074_1.AB1 Blood stage Plasmodium falciparum ...    36   0.15   3
(AC170859) Glycine max clone gmp1-92i7, WORKING DRAFT SEQUENCE.    38   0.18   5
(CP000993) Borrelia recurrentis A1, complete genome.               32   0.18   21
(CT817803) Zebrafish DNA sequence from clone DKEY-114G13 in ...    50   0.21   1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    36   0.26   15
(BJ323835) Dictyostelium discoideum cDNA clone:dda12b15, 5' ...    36   0.26   3
(CR548612) Paramecium tetraurelia macronuclear largest chrom...    36   0.29   19
(AC232432) Medicago truncatula chromosome 7 clone mte1-76j19...    36   0.30   8
(BX548174) Prochlorococcus marinus MED4 complete genome.           34   0.40   23
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    34   0.41   12
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    32   0.46   19
(AC147747) Homo sapiens chromosome 5 clone RP11-862D23, WORK...    36   0.51   8
(AL163852) Arabidopsis thaliana DNA chromosome 3, BAC clone ...    36   0.59   6
(AC004153) Plasmodium falciparum chromosome 12 clone PFYAC81...    40   0.60   9
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    34   0.66   10
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    38   0.70   13
(CU682349) M.truncatula DNA sequence from clone MTH2-90A5 on...    36   0.72   9
(AC164189) Bos taurus clone CH240-151D2, *** SEQUENCING IN P...    40   0.81   4
(CR788322) Zebrafish DNA sequence from clone CH211-194C3 in ...    48   0.82   1
(AL929492) Zebrafish DNA sequence from clone CH211-155K1.          48   0.82   1
(AL138755) Human DNA sequence from clone RP11-48M17 on chrom...    48   0.82   1
(AC068185) Homo sapiens chromosome 11, clone RP11-330I10, co...    48   0.82   1
(AC053466) Homo sapiens chromosome 10 clone RP11-491G3, comp...    48   0.82   1
(AC232856) Solanum lycopersicum chromosome 6 clone C06HBa004...    48   0.82   1
(AC181907) Strongylocentrotus purpuratus clone R3-1012P21, W...    48   0.82   1
(AC179503) Strongylocentrotus purpuratus clone R3-1035H11, W...    48   0.82   1
(AC176719) Strongylocentrotus purpuratus clone R3-3095N13, W...    48   0.82   1
(AC168827) Strongylocentrotus purpuratus clone R3-13E10, WOR...    48   0.82   1
(AC168727) Strongylocentrotus purpuratus clone R3-3010L3, WO...    48   0.82   1
(AG705423) Macaca fuscata fuscata DNA, clone: MSB2-147I07_F,...    48   0.82   1
(EG612703) REPROTRACTF093614O6 POSSUM_01-POSSUM-C-REPROTRACT...    48   0.82   1
(EC345872) KIDNEYF091703B2 POSSUM_01-POSSUM-KIDNEY-2KB Trich...    48   0.82   1
(EC336574) KIDNEYF089536B24 POSSUM_01-POSSUM-KIDNEY-2KB Tric...    48   0.82   1
(BP876916) Solanum lycopersicum cDNA, clone: FA06BG01, 5' en...    48   0.82   1
(CP000926) Pseudomonas putida GB-1, complete genome.               48   0.82   1
(CP000712) Pseudomonas putida F1, complete genome.                 48   0.82   1
(AE015451) Pseudomonas putida KT2440 complete genome.              48   0.82   1
(AC189977) Glycine tomentella clone gtd1-55n8, WORKING DRAFT...    34   0.98   8
(Y13975) Candida albicans PLC1 gene.                               38   1.0    2
(AC146086) Pan troglodytes BAC clone RP43-15D2 from chromoso...    34   1.0    6
(CR848046) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   1.2    7
(CR382398) Plasmodium falciparum chromosome 6, complete sequ...    46   1.2    14
(AC181533) Strongylocentrotus purpuratus clone R3-7C11, WORK...    40   1.2    7
(BK002857) TPA_inf: Drosophila melanogaster HDC15811 (HDC158...    36   1.3    2
(AC036173) Homo sapiens chromosome 8 clone RP11-126I14 map 8...    38   1.5    6
(AC181212) Strongylocentrotus purpuratus clone R3-115N18, WO...    36   1.6    2
(BX927071) Zebrafish DNA sequence from clone DKEY-286O23 in ...    40   1.6    5
(AC181019) Strongylocentrotus purpuratus clone R3-3056D16, W...    36   1.7    2
(EL499373) PFLAB1-S_F3_-P5A_B10_04.AB1 Blood stage Plasmodiu...    36   1.7    2
(AC181393) Strongylocentrotus purpuratus clone R3-4I20, WORK...    36   1.7    2
(BX323881) Zebrafish DNA sequence from clone CH211-274G13 in...    34   1.8    6
(AC171585) Bos taurus clone CH240-262K14, WORKING DRAFT SEQU...    36   1.8    8
(CR318597) Zebrafish DNA sequence from clone CH211-151L13 in...    34   2.0    9
(AC195111) Medicago truncatula chromosome 7 BAC clone mth2-5...    36   2.0    7
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    32   2.1    13
(DD307080) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO...    38   2.2    4
(AM180254) Lawsonia intracellularis PHE/MN1-00 plasmid 2.          38   2.2    4
(DV307676) NABPL38TF Aedes aegypti infected with Brugia Mala...    34   2.2    3
(EE674555) EST1296 Mycelia Grown in Nitrogen Limited Media C...    36   2.3    2
(AP005745) Oryza sativa Japonica Group genomic DNA, chromoso...    44   2.5    4
(AC152425) Medicago truncatula chromosome 8 clone mth2-62c22...    36   2.5    8
(AC017859) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    40   2.5    3
(AC115581) Dictyostelium discoideum chromosome 2 map complem...    36   2.6    7
(AM467496) Vitis vinifera contig VV78X100589.6, whole genome...    30   2.6    6
(AC146480) Danio rerio clone CH211-40O9, complete sequence.        36   2.6    5
(AL929558) Zebrafish DNA sequence from clone CH211-159N7.          36   2.8    5
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    32   3.0    14
(EY483066) CBBP12754.fwd CBBP Hirudo medicinalis hermaphrodi...    36   3.0    2
(EY483065) CBBP12754.rev CBBP Hirudo medicinalis hermaphrodi...    36   3.0    2
(AQ747928) HS_5536_A2_F06_SP6 RPCI-11 Human Male BAC Library...    42   3.1    2
(AC017047) Homo sapiens BAC clone RP11-323F10 from X, comple...    34   3.2    8
(CR376756) Zebrafish DNA sequence from clone CH211-87A15 in ...    46   3.2    1
(CR382126) Kluyveromyces lactis strain NRRL Y-1140 chromosom...    46   3.2    1
(AM465903) Vitis vinifera contig VV78X172597.34, whole genom...    46   3.2    1
(AC003958) Homo sapiens chromosome 17, clone RP5-18F17, comp...    46   3.2    1
(AC137311) Rattus norvegicus clone CH230-unknown, WORKING DR...    46   3.2    1
(AC137219) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    46   3.2    1
(AC125364) Rattus norvegicus clone CH230-83G7, *** SEQUENCIN...    46   3.2    1
(AC119536) Rattus norvegicus clone CH230-424O4, WORKING DRAF...    46   3.2    1
(AC117065) Rattus norvegicus clone CH230-302O22, WORKING DRA...    46   3.2    1
(AC113917) Rattus norvegicus clone CH230-47A18, WORKING DRAF...    46   3.2    1
(AC106421) Rattus norvegicus clone CH230-126J7, *** SEQUENCI...    46   3.2    1
(AC184237) Strongylocentrotus purpuratus clone R3-3061A4, WO...    46   3.2    1
(AC181870) Strongylocentrotus purpuratus clone R3-1019K19, W...    46   3.2    1
(AC180365) Strongylocentrotus purpuratus clone R3-3115N12, W...    46   3.2    1
(AC180253) Strongylocentrotus purpuratus clone R3-32C10, WOR...    46   3.2    1
(AC179710) Strongylocentrotus purpuratus clone R3-1021H20, W...    46   3.2    1
(AC178539) Strongylocentrotus purpuratus clone R3-3031E4, WO...    46   3.2    1
(AC177126) Strongylocentrotus purpuratus clone R3-4014G5, WO...    46   3.2    1
(AC176251) Strongylocentrotus purpuratus clone R3-3060G2, WO...    46   3.2    1
(AC172488) Strongylocentrotus purpuratus clone R3-14F15, WOR...    46   3.2    1
(AY809032) Schistosoma japonicum SJCHGC08166 protein mRNA, p...    46   3.2    1
(EJ035113) 1095454066870 Global-Ocean-Sampling_GS-26-01-01-1...    46   3.2    1
(EI509814) MUGQ_CH252P520L07Sp6_GL507_022 CHORI-252 Vervet M...    46   3.2    1
(ED991859) MUGQ_CH252P161B02T7_CN191_015 CHORI-252 Vervet Mo...    46   3.2    1
(DX228186) OR_ABa0107F17.f OR_ABa Oryza ridleyi genomic clon...    46   3.2    1
(DX204420) OR_ABa0074L11.r OR_ABa Oryza ridleyi genomic clon...    46   3.2    1
(BZ953251) CH240_126K14.TV CHORI-240 Bos taurus genomic clon...    46   3.2    1
(BZ285604) CH230-431K13.TJ CHORI-230 Segment 2 Rattus norveg...    46   3.2    1
(EH016843) USDA-FP_189303 Lysiphlebus testaceipes adult whol...    46   3.2    1
(CV686006) sjs2-010_A03_sjs2-010A03-T3 SJS Schistosoma japon...    46   3.2    1
(CF081637) QHL13O08.yg.ab1 QH_L sunflower H.paradoxus (salt ...    46   3.2    1
(FM960037) Glossina morsitans morsitans EST, clone GMsg03g08...    46   3.2    1
(FC069751) sT7aVVM025L16054 VVM Vitis vinifera cDNA clone VV...    46   3.2    1
(EX640860) 256635721 Pea aphid whole body normalized full le...    46   3.2    1
(CP000771) Fervidobacterium nodosum Rt17-B1, complete genome.      46   3.2    1
(FD461930) LARVP05TR Haematobia irritans 1st Instar Larvae H...    32   3.3    3
(AC180328) Strongylocentrotus purpuratus clone R3-3118H12, W...    42   3.4    4
(BX248237) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   3.5    7
(AC159743) Pan troglodytes BAC clone CH251-267D14 from chrom...    42   3.5    3
(AC093005) Homo sapiens chromosome 3q clone RP11-386M5, WORK...    40   3.6    6
(AC153160) Glycine max clone gmp1-83i9, complete sequence.         38   3.6    4
(CP000728) Clostridium botulinum F str. Langeland, complete ...    34   3.8    19
(AU074274) Dictyostelium discoideum slug cDNA, clone SSK202.       38   3.8    2
(DY888133) CeleSEQ3584 Cunninghamella elegans pBluescript (E...    44   3.9    2
(EK197074) 1095460041935 Global-Ocean-Sampling_GS-31-01-01-1...    36   4.0    2
(CP000976) Borrelia duttonii Ly, complete genome.                  32   4.0    17
(AC116918) Dictyostelium discoideum chromosome 2 map 6143698...    36   4.2    4
(AM438790) Vitis vinifera contig VV78X074483.16, whole genom...    34   4.2    4
(AC195540) Zea mays chromosome 1 clone CH201-315F23; ZMMBBc0...    38   4.4    3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    38   4.4    10
(AC006916) Caenorhabditis elegans clone Y9C9, *** SEQUENCING...    36   4.5    8
(GC698559) Sequence 13804 from patent US 6812339.                  42   4.5    2
(BK006346) TPA_exp: Apis mellifera sex determination locus, ...    32   4.6    5
(AC090146) Homo sapiens chromosome 8, clone RP11-366J9, comp...    42   4.7    8
(AC121738) Rattus norvegicus clone CH230-88K16, WORKING DRAF...    38   4.7    8
(AC179085) Strongylocentrotus purpuratus clone R3-4009J12, W...    34   5.3    7
(AC010240) Homo sapiens chromosome 5 clone CTC-350I8, comple...    42   5.7    2
(AC181384) Strongylocentrotus purpuratus clone R3-4H01, WORK...    34   5.9    2
(AK071952) Oryza sativa Japonica Group cDNA clone:J013084M07...    40   5.9    2
(AC180264) Strongylocentrotus purpuratus clone R3-3123F18, W...    34   6.0    2
(AC180713) Strongylocentrotus purpuratus clone R3-3085A17, W...    34   6.0    2
(AC176408) Strongylocentrotus purpuratus clone R3-3044P19, W...    34   6.0    2
(AC176043) Strongylocentrotus purpuratus clone R3-18J7, WORK...    34   6.0    2
(AC181051) Strongylocentrotus purpuratus clone R3-3050L15, W...    34   6.0    2
(AC181379) Strongylocentrotus purpuratus clone R3-4D02, WORK...    34   6.1    2
(AC179231) Strongylocentrotus purpuratus clone R3-41L14, WOR...    34   6.1    2
(AC184318) Strongylocentrotus purpuratus clone R3-4005F4, WO...    34   6.1    2
(AC180453) Strongylocentrotus purpuratus clone R3-3009O16, W...    34   6.1    2
(AC181464) Strongylocentrotus purpuratus clone R3-51D5, WORK...    34   6.1    2
(AC178210) Strongylocentrotus purpuratus clone R3-3085F07, W...    34   6.1    2
(AC175892) Strongylocentrotus purpuratus clone R3-3043F03, W...    34   6.1    2
(AC179790) Strongylocentrotus purpuratus clone R3-1015B13, W...    34   6.1    2
(AC179163) Strongylocentrotus purpuratus clone R3-4016C6, WO...    34   6.1    2
(AC179716) Strongylocentrotus purpuratus clone R3-1021E12, W...    34   6.1    2
(AC177096) Strongylocentrotus purpuratus clone R3-4012I22, W...    34   6.2    2
(AC201676) Strongylocentrotus purpuratus clone R3-1111J17, W...    34   6.2    2
(AC181800) Strongylocentrotus purpuratus clone R3-1028H12, W...    34   6.2    2
(AC176767) Strongylocentrotus purpuratus clone R3-3104C1, WO...    34   6.2    2
(AC201211) Strongylocentrotus purpuratus clone R3-15D8, WORK...    34   6.2    2
(AC184882) Strongylocentrotus purpuratus clone R3-1015A21, W...    34   6.2    2
(AC179113) Strongylocentrotus purpuratus clone R3-1107O21, W...    34   6.2    2
(AC201366) Strongylocentrotus purpuratus clone R3-17C23, WOR...    34   6.2    2
(AC170770) Bos taurus clone CH240-263H3, WORKING DRAFT SEQUE...    34   6.2    7
(AC179623) Strongylocentrotus purpuratus clone R3-1028E4, WO...    34   6.2    2
(AC201279) Strongylocentrotus purpuratus clone R3-16D24, WOR...    34   6.3    2
(AC180918) Strongylocentrotus purpuratus clone R3-3063E24, W...    34   6.3    2
(AC180276) Strongylocentrotus purpuratus clone R3-3123O18, W...    34   6.3    2
(AC116100) Dictyostelium discoideum chromosome 2 map 6163571...    32   6.3    5
(AC147582) Otolemur garnettii clone CH256-374B11, WORKING DR...    38   6.3    6
(AC181244) Strongylocentrotus purpuratus clone R3-115K20, WO...    34   6.5    2
(AC214861) Populus trichocarpa clone POP007-N13, complete se...    38   6.8    7
(AC195897) Zea mays chromosome 6 clone ZMMBBb-281K4; ZMMBBb0...    44   7.0    3
(DQ102703) Coreana raphaelis mitochondrion, complete genome.       34   7.0    2
(AC053491) Homo sapiens chromosome 5 clone RP11-221D10, WORK...    38   7.1    6
(FH097296) CHO_OF3025xa21f1.ab1 CHO_OF3 Nicotiana tabacum ge...    36   7.2    3
(AC110766) Homo sapiens BAC clone RP11-93M12 from 4, complet...    34   7.2    6
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s...    32   7.2    13
(ER461899) 1092963898996 Global-Ocean-Sampling_GS-35-01-01-1...    32   7.2    3
(AC073178) Arabidopsis thaliana chromosome 1 BAC F10D13 geno...    42   7.3    4
(EI839661) POTIV05TF Solanum tuberosum RHPOTKEY BAC ends Sol...    32   7.4    3
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    30   7.6    19
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    30   7.6    19
(AC015062) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    36   7.7    4
(EK258937) 1095462082061 Global-Ocean-Sampling_GS-31-01-01-1...    32   8.2    2
(AY553881) Arhopala moolaiana 16S large subunit ribosomal RN...    34   8.2    2
(AY553903) Flos anniella 16S large subunit ribosomal RNA gen...    34   8.2    2
(DE456773) Bombyx mori genomic DNA, Fosmid clone:GBMFno51_h0...    34   8.2    2
(AC006279) Plasmodium falciparum chromosome 12 clone PFYAC61...    34   8.2    9
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    34   8.4    19
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   8.7    12
(AC168488) Strongylocentrotus purpuratus clone R3-3117J19, W...    32   9.5    8
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    30   9.6    9
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    40   9.6    17

>(BJ343297) Dictyostelium discoideum cDNA clone:dda22j18, 3' end,
            single read.
          Length = 717

 Score =  553 bits (279), Expect(3) = 0.0
 Identities = 282/283 (99%)
 Strand = Plus / Minus


Query: 858  ttggtaaaactttaattacaattagagaatcatttttaaagataagatcattaatgagag 917
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369  ttggtaaaactttaattacaattagagaatcatttttaaagataagatcattaatgagag 310


Query: 918  aaatgggtaaaattgctgatgtaccattggaaccaattgaacaaactgaattggctgatc 977
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309  aaatgggtaaaattgctgatgtaccattggaaccaattgaacaaactgaattggctgatc 250


Query: 978  atacaatgtcaatcaatggttgtattgctgctggtgtacctggtgctggtggtttcgatg 1037
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249  atacaatgtcagtcaatggttgtattgctgctggtgtacctggtgctggtggtttcgatg 190


Query: 1038 ctttattcgctatcgttatcactaatcaagatgaaattaaaaactcttggatgaattgga 1097
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189  ctttattcgctatcgttatcactaatcaagatgaaattaaaaactcttggatgaattgga 130


Query: 1098 agaaatgtcaagttttacctttagttttaaatgaaaattcaac 1140
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129  agaaatgtcaagttttacctttagttttaaatgaaaattcaac 87

 Score =  464 bits (234), Expect(3) = 0.0
 Identities = 234/234 (100%)
 Strand = Plus / Minus


Query: 510 ataaacatttagatatgggattaccaagaggattacatttattattagcagatgttagta 569
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ataaacatttagatatgggattaccaagaggattacatttattattagcagatgttagta 658


Query: 570 ttggttcaaatacaccagtaatggttaaaaagatattagaatggagaaagaatgatccaa 629
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ttggttcaaatacaccagtaatggttaaaaagatattagaatggagaaagaatgatccaa 598


Query: 630 cccttgcaaatgcaatttggaatcaattggatattgaaaatacaaatgttaaacattgtt 689
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cccttgcaaatgcaatttggaatcaattggatattgaaaatacaaatgttaaacattgtt 538


Query: 690 tcattaaattgaatcaattaagtaaagaaaatcagtcacaatatgataaagttt 743
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tcattaaattgaatcaattaagtaaagaaaatcagtcacaatatgataaagttt 484

 Score = 67.9 bits (34), Expect(3) = 0.0
 Identities = 34/34 (100%)
 Strand = Plus / Minus


Query: 1141 ctggtgttgcaattgatatgtctcatattactcc 1174
            ||||||||||||||||||||||||||||||||||
Sbjct: 87   ctggtgttgcaattgatatgtctcatattactcc 54

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,593,184,549
Number of extensions: 103835757
Number of successful extensions: 9892699
Number of sequences better than 10.0: 204
Length of query: 1245
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1221
Effective length of database: 99,340,224,878
Effective search space: 121294414576038
Effective search space used: 121294414576038
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U00581-1 (Contig-U00581-1Q) /CSM_Contig/Contig-U00581-1Q.Seq.d
         (1245 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008209_935(AP008209|pid:none) Oryza sativa (japonica cultivar-...   120   8e-26
AC079041_7(AC079041|pid:none) Arabidopsis thaliana chromosome 1 ...   114   9e-24
AK175511_1(AK175511|pid:none) Arabidopsis thaliana mRNA for hypo...   114   9e-24
AK175219_1(AK175219|pid:none) Arabidopsis thaliana mRNA for hypo...   110   1e-22
AB294694_1(AB294694|pid:none) Hevea brasiliensis HbMVD mRNA for ...   105   4e-21
EU962890_1(EU962890|pid:none) Zea mays clone 246285 phosphomeval...   100   1e-19
CT005254_152(CT005254|pid:none) Leishmania major strain Friedlin...    87   2e-15
FM992691_162(FM992691|pid:none) Candida dubliniensis CD36 chromo...    86   2e-15
FN392320_988(FN392320|pid:none) Pichia pastoris GS115 chromosome...    85   5e-15
(Q9UT88) RecName: Full=Probable phosphomevalonate kinase;       ...    83   2e-14
CR382131_265(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...    82   3e-14
AM494952_145(AM494952|pid:none) Leishmania braziliensis chromoso...    79   4e-13
CR382139_784(CR382139|pid:none) Debaryomyces hansenii strain CBS...    78   8e-13
AE016818_694(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    71   7e-11
CU928168_530(CU928168|pid:none) Kluyveromyces thermotolerans str...    70   1e-10
CR382123_302(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    64   1e-08
(P24521) RecName: Full=Phosphomevalonate kinase;          EC=2.7...    62   4e-08
M63648_1(M63648|pid:none) S.cerevisiae phosphomevalonate kinase ...    62   4e-08
AK175299_1(AK175299|pid:none) Arabidopsis thaliana mRNA for hypo...    61   7e-08
AK230156_1(AK230156|pid:none) Arabidopsis thaliana mRNA for hypo...    60   2e-07
EU315068_1(EU315068|pid:none) Arnebia euchroma phosphomevalonate...    50   2e-04
EF636815_1(EF636815|pid:none) Nicotiana langsdorffii x Nicotiana...    46   0.003
CP000473_6645(CP000473|pid:none) Solibacter usitatus Ellin6076, ...    36   2.5
FM992692_360(FM992692|pid:none) Candida dubliniensis CD36 chromo...    35   7.3
CR380950_195(CR380950|pid:none) Candida glabrata strain CBS138 c...    34   9.5
CP000903_784(CP000903|pid:none) Bacillus weihenstephanensis KBAB...    34   9.5

>AP008209_935(AP008209|pid:none) Oryza sativa (japonica
            cultivar-group) genomic DNA, chromosome 3.
          Length = 512

 Score =  120 bits (302), Expect = 8e-26
 Identities = 71/204 (34%), Positives = 113/204 (55%), Gaps = 2/204 (0%)
 Frame = +2

Query: 530  LPRGLHLLLADVSIG-SNTPVMVKKILEWRKNDPTLANAIWNQLDIENTNVKHCFIKLNQ 706
            LP  + LLL +   G S+TP MV  + +W+K+DP  +   W++L I N+ +++    LN+
Sbjct: 301  LPPLMSLLLGEPGTGGSSTPSMVGSVKQWQKSDPQKSKETWSKLGIANSVLENQLRNLNK 360

Query: 707  LSKENQSQYDKVLNQFGNLSQSNWESSIQXXXXXXXXXXXXXEDSLIYNNIGKTLITIRE 886
            L++++   Y+ VL     L+ S W                          I ++L+  R+
Sbjct: 361  LAEDHWEAYESVLRSCSRLTCSKWTEVATNQHQEL---------------IVRSLLAARD 405

Query: 887  SFLKIRSLMREMGKIADVPLEPIEQTELADHTMSINGCIAAGVPGAGGFDALFAIVITN- 1063
            +FL+IR  MREMG  A VP+EP  QT+L D TM++ G + AGVPGAGGFDA+F++++
Sbjct: 406  AFLEIRLHMREMGIAAGVPIEPESQTQLLDATMNMEGVLLAGVPGAGGFDAVFSVILGEA 465

Query: 1064 QDEIKNSWMNWKKCQVLPLVLNEN 1135
             D +  +   W    VLPL++ E+
Sbjct: 466  SDAVAKA---WSSAGVLPLLVRED 486

 Score = 49.3 bits (116), Expect = 3e-04
 Identities = 38/120 (31%), Positives = 52/120 (43%)
 Frame = +2

Query: 62  VVCSAPGKVLVTGGYLVLDKKYDGIVFTIDSRFYTTIEGSLXXXXXXXXXXXXXXTLTSS 241
           VV SAPGKVLV GGYLVL++   G+V +  +RFY  +                     S
Sbjct: 3   VVASAPGKVLVAGGYLVLERPNAGLVLSTSARFYAIVR--------------PLRDELSH 48

Query: 242 FETLEYLTDINVISPQFHSSQTYHIYYNKSNENKSYQLKPFGNENYRENKYVENTIIYSL 421
                  TD+ V SPQ     TY +   KS    + QL    +     N +VE  + +S+
Sbjct: 49  DSWAWAWTDVKVTSPQLSREATYKLSLKKS----TLQLT---SSRESANPFVEQAVQFSV 101

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,549,633,604
Number of extensions: 25811739
Number of successful extensions: 75925
Number of sequences better than 10.0: 26
Number of HSP's gapped: 75808
Number of HSP's successfully gapped: 47
Length of query: 415
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 284
Effective length of database: 627,191,635
Effective search space: 178122424340
Effective search space used: 178122424340
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

 psg: 0.77  gvh: 0.36  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar

>> prediction for Contig-U00581-1 is cyt