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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13354-1
Contig ID Contig-U13354-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13354-1 (Contig-U13354-1Q) /CSM_Contig/Contig-U13354-1Q.Seq.d
AAATTAATGGAAAGTTGTACATTTACAACTAAAGAGAATTTTCAAACAGC
ATTTGTTGATCAAGTTAATAAGGTTGATTCATTTTTTGTTGAAAGATATA
GAAAGACCAAAGAGAAATGTGTTGAACTTTGTAATATGATTCCATTTTTA
TCAACAAATGAACAATTGAGAACAATTAGAAATATTGAATTTGTAAAACA
AGGATTTCAAGACAATTATCATTATTTAGAATCATTGGAAGCATTTAAAG
AATTGAATATTAAAGGTTTTAAAAAGGTATTGGAAAAGTATGAAAAAAAG
AATCGTATAATTTCATCAGAATGTAGAAAATATTTAGAGAATACTAGAAT
CTTTGAAAATGATAGTCCAGTTAGATTTTTATCACATAGAATTAAACATT
TGTATGCACGTTATTTCACTGGTAATGATGTAAAGTTGGCATCCAATCAA
ATTAAAACCTATGCAGAGGATGAACGTTTTCAAAAGTATAATCTATTCAC
AATTGGTTTACTAATTGGTGTTTGCATTGTGTTGGGAATTCAAGTTGTAT
TCAATTACTATTACTATTATCCACACGAACAACCACCAATCGATTCACCA
TTGGCATGGTTATTATTCCGTATTTCACTGCTACCCATTCTATTGGGTAC
AATGTTTTCATTGATGTCGTTTATTTGGGAAAAGAGTGGTATAAATTATG
TATTCATATTCGAGTTTAAACCTGACCATAAGAGATCGCCTGGACGTTAT
TTAAAGTATGGTTTAATTTTCAATACACTTTGGCTGTTGGCGTTAAATCT
CTATATAGAATCAACATCTCATCAAAATACAACAAGATACTTGANTCTAA
TTCCAATAGTTTTCGTATTGAACACTTTGATCATCGGTATTCAACCATTT
CCAATAAT
Gap no gap
Contig length 908
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 2758550
End point 2759458
Strand (PLUS/MINUS) PLUS
Number of clones 4
Number of EST 4
Link to clone list U13354
List of clone(s) 

est1=SSB664F,1,331
est2=VHC547F,184,779
est3=VHJ822F,189,777
est4=SLH502F,240,909
Translated Amino Acid sequence 
KLMESCTFTTKENFQTAFVDQVNKVDSFFVERYRKTKEKCVELCNMIPFLSTNEQLRTIR
NIEFVKQGFQDNYHYLESLEAFKELNIKGFKKVLEKYEKKNRIISSECRKYLENTRIFEN
DSPVRFLSHRIKHLYARYFTGNDVKLASNQIKTYAEDERFQKYNLFTIGLLIGVCIVLGI
QVVFNYYYYYPHEQPPIDSPLAWLLFRISLLPILLGTMFSLMSFIWEKSGINYVFIFEFK
PDHKRSPGRYLKYGLIFNTLWLLALNLYIESTSHQNTTRYLXLIPIVFVLNTLIIGIQPF
PI
Translated Amino Acid sequence (All Frames) 
Frame A:
KLMESCTFTTKENFQTAFVDQVNKVDSFFVERYRKTKEKCVELCNMIPFLSTNEQLRTIR
NIEFVKQGFQDNYHYLESLEAFKELNIKGFKKVLEKYEKKNRIISSECRKYLENTRIFEN
DSPVRFLSHRIKHLYARYFTGNDVKLASNQIKTYAEDERFQKYNLFTIGLLIGVCIVLGI
QVVFNYYYYYPHEQPPIDSPLAWLLFRISLLPILLGTMFSLMSFIWEKSGINYVFIFEFK
PDHKRSPGRYLKYGLIFNTLWLLALNLYIESTSHQNTTRYLXLIPIVFVLNTLIIGIQPF
PI


Frame B:
n*wkvvhlqlkrifkqhlliklirlihfllkdierpkrnvlnfvi*fhfyqqmnn*eqle
ilnl*nkdfktiiii*nhwkhlkn*ilkvlkrywksmkkriv*fhqnveni*rileslkm
ivqldfyhielnicmhvislvmm*swhpiklkpmqrmnvfksiiysqlvy*lvfalcwef
klysititiihtnnhqsihhwhgyysvfhcypfywvqcfh*crlfgkrvv*imysyssln
ltirdrldvi*smv*fsihfgcwr*isi*nqhlikiqqdt*x*fq*fsy*tl*ssvfnhf
q*


Frame C:
ingklyiyn*refsnsic*ss**g*fifc*ki*kdqremc*tl*ydsifink*tienn*k
y*icktrisrqlslfriigsi*riey*rf*kgigkv*kkesynfirm*kifrey*nl*k*
*ss*ifit*n*tfvctlfhw**ckvgiqsn*nlcrg*tfskv*sihnwftnwclhcvgns
sciqlllllstrtttnrftigmviipyftathsigynvfidvvylgkewyklcihirv*t
*p*eiawtlfkvwfnfqytlavgvkslyrinisskynkilxsnsnsfriehfdhrystis
nn
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13354-1 (Contig-U13354-1Q)
/CSM_Contig/Contig-U13354-1Q.Seq.d
         (908 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13354-1 (Contig-U13354-1Q) /CSM_Contig/Conti...  1752  0.0
Contig-U12829-1 (Contig-U12829-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U11097-1 (Contig-U11097-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U09099-1 (Contig-U09099-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U08718-1 (Contig-U08718-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U13820-1 (Contig-U13820-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U12411-1 (Contig-U12411-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U02015-1 (Contig-U02015-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U00724-1 (Contig-U00724-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U14830-1 (Contig-U14830-1Q) /CSM_Contig/Conti...    34  0.25

>Contig-U13354-1 (Contig-U13354-1Q) /CSM_Contig/Contig-U13354-1Q.Seq.d
          Length = 908

 Score = 1752 bits (884), Expect = 0.0
 Identities = 901/908 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattaatggaaagttgtacatttacaactaaagagaattttcaaacagcatttgttgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaattaatggaaagttgtacatttacaactaaagagaattttcaaacagcatttgttgat 60

                                                                       
Query: 61  caagttaataaggttgattcattttttgttgaaagatatagaaagaccaaagagaaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  caagttaataaggttgattcattttttgttgaaagatatagaaagaccaaagagaaatgt 120

                                                                       
Query: 121 gttgaactttgtaatatgattccatttttatcaacaaatgaacaattgagaacaattaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gttgaactttgtaatatgattccatttttatcaacaaatgaacaattgagaacaattaga 180

                                                                       
Query: 181 aatattgaatttgtaaaacaaggatttcaagacaattatcattatttagaatcattggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aatattgaatttgtaaaacaaggatttcaagacaattatcattatttagaatcattggaa 240

                                                                       
Query: 241 gcatttaaagaattgaatattaaaggttttaaaaaggtattggaaaagtatgnnnnnnng 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||       |
Sbjct: 241 gcatttaaagaattgaatattaaaggttttaaaaaggtattggaaaagtatgaaaaaaag 300

                                                                       
Query: 301 aatcgtataatttcatcagaatgtagaaaatatttagagaatactagaatctttgaaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aatcgtataatttcatcagaatgtagaaaatatttagagaatactagaatctttgaaaat 360

                                                                       
Query: 361 gatagtccagttagatttttatcacatagaattaaacatttgtatgcacgttatttcact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gatagtccagttagatttttatcacatagaattaaacatttgtatgcacgttatttcact 420

                                                                       
Query: 421 ggtaatgatgtaaagttggcatccaatcaaattaaaacctatgcagaggatgaacgtttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggtaatgatgtaaagttggcatccaatcaaattaaaacctatgcagaggatgaacgtttt 480

                                                                       
Query: 481 caaaagtataatctattcacaattggtttactaattggtgtttgcattgtgttgggaatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 caaaagtataatctattcacaattggtttactaattggtgtttgcattgtgttgggaatt 540

                                                                       
Query: 541 caagttgtattcaattactattactattatccacacgaacaaccaccaatcgattcacca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 caagttgtattcaattactattactattatccacacgaacaaccaccaatcgattcacca 600

                                                                       
Query: 601 ttggcatggttattattccgtatttcactgctacccattctattgggtacaatgttttca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttggcatggttattattccgtatttcactgctacccattctattgggtacaatgttttca 660

                                                                       
Query: 661 ttgatgtcgtttatttgggaaaagagtggtataaattatgtattcatattcgagtttaaa 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttgatgtcgtttatttgggaaaagagtggtataaattatgtattcatattcgagtttaaa 720

                                                                       
Query: 721 cctgaccataagagatcgcctggacgttatttaaagtatggtttaattttcaatacactt 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cctgaccataagagatcgcctggacgttatttaaagtatggtttaattttcaatacactt 780

                                                                       
Query: 781 tggctgttggcgttaaatctctatatagaatcaacatctcatcaaaatacaacaagatac 840
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tggctgttggcgttaaatctctatatagaatcaacatctcatcaaaatacaacaagatac 840

                                                                       
Query: 841 ttgantctaattccaatagttttcgtattgaacactttgatcatcggtattcaaccattt 900
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ttgantctaattccaatagttttcgtattgaacactttgatcatcggtattcaaccattt 900

                   
Query: 901 ccaataat 908
           ||||||||
Sbjct: 901 ccaataat 908


>Contig-U12829-1 (Contig-U12829-1Q) /CSM_Contig/Contig-U12829-1Q.Seq.d
          Length = 621

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 102 aaagaccaaagagaaatgtg 121
           ||||||||||||||||||||
Sbjct: 510 aaagaccaaagagaaatgtg 529


>Contig-U11097-1 (Contig-U11097-1Q) /CSM_Contig/Contig-U11097-1Q.Seq.d
          Length = 3265

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 102 aaagaccaaagagaaatgtg 121
           ||||||||||||||||||||
Sbjct: 950 aaagaccaaagagaaatgtg 969


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,665
Number of Sequences: 6905
Number of extensions: 12665
Number of successful extensions: 1507
Number of sequences better than 10.0: 199
length of query: 908
length of database: 5,674,871
effective HSP length: 16
effective length of query: 892
effective length of database: 5,564,391
effective search space: 4963436772
effective search space used: 4963436772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 8
Homology vs DNA 
Query= Contig-U13354-1 (Contig-U13354-1Q) /CSM_Contig/Contig-U13354-1Q.Seq.d
         (908 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU062083) Dictyostelium discoideum slug cDNA, clone SLH502.     1201   0.0    2
(AU071498) Dictyostelium discoideum slug cDNA, clone SSB664.      476   e-130  1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    68   3e-14  9
(BJ423715) Dictyostelium discoideum cDNA clone:ddv50l06, 5' ...    48   4e-12  5
(BJ419541) Dictyostelium discoideum cDNA clone:ddv36m11, 5' ...    48   4e-12  5
(CU207233) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.53   6
(AM910996) Plasmodium knowlesi strain H chromosome 14, compl...    48   0.58   1
(AC116925) Dictyostelium discoideum chromosome 2 map 4189423...    48   0.58   1
(AC168415) Strongylocentrotus purpuratus clone R3-4002B23, W...    40   1.1    7
(AM463263) Vitis vinifera contig VV78X230542.2, whole genome...    42   1.4    2
(AC024574) Homo sapiens chromosome 5 clone CTD-2321A2, WORKI...    42   1.9    4
(AL395780) T3 end of clone AR0AA026A12 of library AR0AA from...    30   2.1    4
(CU104736) Human DNA sequence from clone XX-NCIH2171_5G15.         46   2.3    1
(AC107486) Homo sapiens BAC clone RP11-814I21 from 4, comple...    46   2.3    1
(AC096729) Homo sapiens BAC clone RP11-63M2 from 4, complete...    46   2.3    1
(CU927928) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.3    1
(AC068103) Homo sapiens chromosome 4 clone RP11-181I4 map 4,...    46   2.3    1
(AC020669) Homo sapiens clone RP11-114M4, WORKING DRAFT SEQU...    46   2.3    1
(EJ241618) 1095328068120 Global-Ocean-Sampling_GS-27-01-01-1...    46   2.3    1
(EC269029) TT1CU25TV Tetrahymena thermophila SB210 cDNA libr...    46   2.3    1
(EC269027) TT1CU25TH Tetrahymena thermophila SB210 cDNA libr...    46   2.3    1
(CU571428) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   2.5    5
(DU989561) KBrH084H11R KBrH (HindIII) BAC library Brassica r...    34   2.9    3
(EB823714) 1108959 CC04 Plodia interpunctella cDNA clone 571...    32   3.8    3
(AF378874) Arabidopsis thaliana At1g34000/F12G12_210 mRNA, c...    36   6.4    2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    32   6.4    12
(AC016549) Homo sapiens chromosome 5 clone CTC-250P22, compl...    42   6.6    5
(CL489948) SAIL_531_G05.v1 SAIL Collection Arabidopsis thali...    36   7.1    2
(AC060765) Homo sapiens chromosome 8, clone RP11-653B10, com...    42   7.2    4
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    32   7.9    9
(AC179729) Strongylocentrotus purpuratus clone R3-1018M20, W...    34   7.9    5
(AC024180) Homo sapiens chromosome 3 clone RP11-172A10, WORK...    36   8.5    6
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ...    32   8.6    10
(AC177582) Strongylocentrotus purpuratus clone R3-1025N4, WO...    30   8.6    7
(AC004710) Plasmodium falciparum chromosome 12, *** SEQUENCI...    34   9.0    6
(CR753844) Zebrafish DNA sequence from clone DKEY-193H7 in l...    44   9.1    1
(BX005059) Zebrafish DNA sequence from clone CH211-138A6.          44   9.1    1
(AC114001) Mus musculus BAC clone RP23-162H9 from X, complet...    44   9.1    1
(AC189616) Brassica rapa subsp. pekinensis clone KBrH099I08,...    44   9.1    1
(DL061116) Cancer Gene Determination and Therapeutic Screeni...    44   9.1    1
(DD025562) Therapeutic Approaches to Diseases by Suppression...    44   9.1    1
(CS618209) Sequence 129 from Patent WO2006055786.                  44   9.1    1
(CS618205) Sequence 125 from Patent WO2006055786.                  44   9.1    1
(CS618203) Sequence 123 from Patent WO2006055786.                  44   9.1    1
(CS419209) Sequence 1 from Patent EP1705256.                       44   9.1    1
(CS041151) Sequence 1705 from Patent WO2005019258.                 44   9.1    1
(CS032199) Sequence 1705 from Patent WO2005016962.                 44   9.1    1
(AX329720) Sequence 229 from Patent WO0194629.                     44   9.1    1
(AJ011767) Sus scrofa mRNA for neuron-derived orphan recepto...    44   9.1    1
(AY232271) Dictyostelium discoideum putative protein Roco9 (...    44   9.1    1
(U12767) Human mitogen induced nuclear orphan receptor (MINO...    44   9.1    1
(AL358937) Human DNA sequence from clone RP11-60I3 on chromo...    44   9.1    1
(AL022725) Human DNA sequence from clone RP3-430A16 on chrom...    44   9.1    1
(AK226108) Homo sapiens mRNA for nuclear receptor subfamily ...    44   9.1    1
(AC091044) Homo sapiens chromosome 18, clone RP11-694H12, co...    44   9.1    1
(AC073614) Homo sapiens Xp BAC RP11-617O8 (Roswell Park Canc...    44   9.1    1
(AC084115) Homo sapiens chromosome 18 clone RP11-1144L1 map ...    44   9.1    1
(CU468357) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.1    1
(CU459176) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   9.1    1
(CU407057) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.1    1
(CU302447) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.1    1
(AP002440) Homo sapiens genomic DNA, chromosome 18q12 clone:...    44   9.1    1
(AC213802) Zea mays chromosome 1 clone CH201-12P4; ZMMBBc001...    44   9.1    1
(AC210265) Zea mays chromosome 9 clone CH201-25J1; ZMMBBc002...    44   9.1    1
(AC209873) Zea mays chromosome 1 clone CH201-179P10; ZMMBBc0...    44   9.1    1
(AC191636) Zea mays chromosome 3 clone ZMMBBb-94L22; ZMMBBb0...    44   9.1    1
(AC189091) Zea mays chromosome 3 clone CH201-251C24; ZMMBBc0...    44   9.1    1
(AC185110) Zea mays chromosome 3 clone CH201-528E5; ZMMBBc05...    44   9.1    1
(AC176583) Strongylocentrotus purpuratus clone R3-3077I12, W...    44   9.1    1
(AC172632) Bos taurus clone CH240-301F4, WORKING DRAFT SEQUE...    44   9.1    1
(FH461676) CHO_OF4935xp18f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   9.1    1
(EK176996) 1095458101770 Global-Ocean-Sampling_GS-31-01-01-1...    44   9.1    1
(DE914722) Macropus eugenii DNA, BAC clone: MEB1-099H09_R, 3...    44   9.1    1
(EC288242) BRAINF091683I17 POSSUM_01-POSSUM-C-BRAIN-2KB Tric...    44   9.1    1
(CO887654) BovGen_15979 normal cattle brain Bos taurus cDNA ...    44   9.1    1
(CO879144) BovGen_07470 normal cattle brain Bos taurus cDNA ...    44   9.1    1
(AL710005) Homo sapiens mRNA; EST DKFZp686M1265_r1  (from cl...    44   9.1    1
(AJ816939) Bos sp. EST, clone C0005208k22.                         44   9.1    1
(CB425322) 600290 MARC 6BOV Bos taurus cDNA 3', mRNA sequence.     44   9.1    1
(BX092030) RZPD Homo sapiens cDNA clone IMAGp998B13172 = IMA...    44   9.1    1
(AI150240) qf34e05.x1 Soares_testis_NHT Homo sapiens cDNA cl...    44   9.1    1
(BM992796) UI-H-DT0-atv-m-10-0-UI.s1 NCI_CGAP_DT0 Homo sapie...    44   9.1    1
(BI223449) 602943056F1 NIH_MGC_12 Homo sapiens cDNA clone IM...    44   9.1    1
(R55839) yg89c07.r1 Soares infant brain 1NIB Homo sapiens cD...    44   9.1    1
(N28572) yx37h05.r1 Soares melanocyte 2NbHM Homo sapiens cDN...    44   9.1    1
(H88459) yw21h04.r1 Morton Fetal Cochlea Homo sapiens cDNA c...    44   9.1    1
(EV817346) BGBV-aae99g03.b1 Snail_EST_pSMART Biomphalaria gl...    44   9.1    1
(CT573072) Kuenenia stuttgartiensis genome fragment KUST_D (...    44   9.1    1
(AC202203) Regiella insecticola  BAC CUGI_APP_BA-001H17 () c...    44   9.1    1
(AC150436) Lemur catta clone LB2-270M13, WORKING DRAFT SEQUE...    38   9.3    4

>(AU062083) Dictyostelium discoideum slug cDNA, clone SLH502.
          Length = 670

 Score = 1201 bits (606), Expect(2) = 0.0
 Identities = 609/609 (100%)
 Strand = Plus / Plus


Query: 300 gaatcgtataatttcatcagaatgtagaaaatatttagagaatactagaatctttgaaaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaatcgtataatttcatcagaatgtagaaaatatttagagaatactagaatctttgaaaa 120


Query: 360 tgatagtccagttagatttttatcacatagaattaaacatttgtatgcacgttatttcac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgatagtccagttagatttttatcacatagaattaaacatttgtatgcacgttatttcac 180


Query: 420 tggtaatgatgtaaagttggcatccaatcaaattaaaacctatgcagaggatgaacgttt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tggtaatgatgtaaagttggcatccaatcaaattaaaacctatgcagaggatgaacgttt 240


Query: 480 tcaaaagtataatctattcacaattggtttactaattggtgtttgcattgtgttgggaat 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcaaaagtataatctattcacaattggtttactaattggtgtttgcattgtgttgggaat 300


Query: 540 tcaagttgtattcaattactattactattatccacacgaacaaccaccaatcgattcacc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcaagttgtattcaattactattactattatccacacgaacaaccaccaatcgattcacc 360


Query: 600 attggcatggttattattccgtatttcactgctacccattctattgggtacaatgttttc 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attggcatggttattattccgtatttcactgctacccattctattgggtacaatgttttc 420


Query: 660 attgatgtcgtttatttgggaaaagagtggtataaattatgtattcatattcgagtttaa 719
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attgatgtcgtttatttgggaaaagagtggtataaattatgtattcatattcgagtttaa 480


Query: 720 acctgaccataagagatcgcctggacgttatttaaagtatggtttaattttcaatacact 779
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 acctgaccataagagatcgcctggacgttatttaaagtatggtttaattttcaatacact 540


Query: 780 ttggctgttggcgttaaatctctatatagaatcaacatctcatcaaaatacaacaagata 839
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttggctgttggcgttaaatctctatatagaatcaacatctcatcaaaatacaacaagata 600


Query: 840 cttgantctaattccaatagttttcgtattgaacactttgatcatcggtattcaaccatt 899
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cttgantctaattccaatagttttcgtattgaacactttgatcatcggtattcaaccatt 660


Query: 900 tccaataat 908
           |||||||||
Sbjct: 661 tccaataat 669

 Score =  105 bits (53), Expect(2) = 0.0
 Identities = 53/53 (100%)
 Strand = Plus / Plus


Query: 240 agcatttaaagaattgaatattaaaggttttaaaaaggtattggaaaagtatg 292
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agcatttaaagaattgaatattaaaggttttaaaaaggtattggaaaagtatg 53

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,107,121,235
Number of extensions: 64442081
Number of successful extensions: 5232793
Number of sequences better than 10.0: 92
Length of query: 908
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 884
Effective length of database: 97,308,875,965
Effective search space: 86021046353060
Effective search space used: 86021046353060
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 6
Homology vs Protein 
Query= Contig-U13354-1 (Contig-U13354-1Q) /CSM_Contig/Contig-U13354-1Q.Seq.d
         (908 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54HI2) RecName: Full=SPX and EXS domain-containing protein 4;       582   e-165
(Q86HQ3) RecName: Full=SPX and EXS domain-containing protein 2; ...   353   3e-96
AE014298_584(AE014298|pid:none) Drosophila melanogaster chromoso...    73   2e-11
AC150777_26(AC150777|pid:none) Medicago truncatula chromosome 7 ...    66   1e-09
(Q54G02) RecName: Full=SPX and EXS domain-containing protein 5;        61   6e-08
EU258930_1(EU258930|pid:none) Physcomitrella patens PHO1-6 mRNA,...    59   2e-07
AC069160_13(AC069160|pid:none) Arabidopsis thaliana chromosome 1...    58   4e-07
(Q8S403) RecName: Full=Putative phosphate transporter 1;  &AF474...    58   5e-07
AK226889_1(AK226889|pid:none) Arabidopsis thaliana mRNA for hypo...    57   9e-07
AY507957_1(AY507957|pid:none) Arabidopsis thaliana PHO1-like pro...    57   9e-07
AM920436_1679(AM920436|pid:none) Penicillium chrysogenum Wiscons...    56   1e-06
AP002845_30(AP002845|pid:none) Oryza sativa Japonica Group genom...    56   2e-06
AY507954_1(AY507954|pid:none) Arabidopsis thaliana PHO1-like pro...    55   2e-06
AC073178_18(AC073178|pid:none) Arabidopsis thaliana chromosome 1...    55   3e-06
AY507962_1(AY507962|pid:none) Arabidopsis thaliana PHO1-like pro...    55   3e-06
DQ788527_1(DQ788527|pid:none) Physcomitrella patens PHO1-1 mRNA,...    55   4e-06
AB015474_16(AB015474|pid:none) Arabidopsis thaliana genomic DNA,...    54   6e-06
DQ788528_1(DQ788528|pid:none) Physcomitrella patens PHO1-2 mRNA,...    54   7e-06
AY507955_1(AY507955|pid:none) Arabidopsis thaliana PHO1-like pro...    54   7e-06
AY507959_1(AY507959|pid:none) Arabidopsis thaliana PHO1-like pro...    53   1e-05
(Q9R031) RecName: Full=Xenotropic and polytropic retrovirus rece...    53   2e-05
BC163273_1(BC163273|pid:none) Danio rerio si:dkey-6n6.7, mRNA (c...    52   2e-05
BC166142_1(BC166142|pid:none) Xenopus tropicalis xenotropic and ...    52   4e-05
(Q9QZ71) RecName: Full=Xenotropic and polytropic retrovirus rece...    52   4e-05
AF131096_1(AF131096|pid:none) Mus musculus xenotropic and polytr...    52   4e-05
BT053021_1(BT053021|pid:none) Medicago truncatula clone MTYFL_FM...    51   5e-05
AM424416_2(AM424416|pid:none) Vitis vinifera contig VV78X196128....    50   8e-05
BC161992_1(BC161992|pid:none) Rattus norvegicus xenotropic and p...    50   8e-05
AF131099_1(AF131099|pid:none) Cricetulus griseus xenotropic and ...    50   1e-04
AC068197_26(AC068197|pid:none) Genomic sequence for Arabidopsis ...    49   2e-04
AM270128_4(AM270128|pid:none) Aspergillus niger contig An07c0100...    49   3e-04
(Q9QZ70) RecName: Full=Xenotropic and polytropic retrovirus rece...    49   3e-04
AF131097_1(AF131097|pid:none) Mus dunni xenotropic and polytropi...    48   4e-04
AL133058_1(AL133058|pid:none) Homo sapiens mRNA; cDNA DKFZp434K0...    48   5e-04
CR858618_1(CR858618|pid:none) Pongo abelii mRNA; cDNA DKFZp469O0...    48   5e-04
AL162431_2(AL162431|pid:none) Human DNA sequence from clone RP11...    48   5e-04
AY057574_1(AY057574|pid:none) Arabidopsis thaliana At1g68740/F24...    48   5e-04
(Q9TU72) RecName: Full=Xenotropic and polytropic retrovirus rece...    48   5e-04
(Q54MJ9) RecName: Full=SPX and EXS domain-containing protein 3; ...    47   9e-04
CR858181_1(CR858181|pid:none) Pongo abelii mRNA; cDNA DKFZp469I0...    47   0.001
AY507956_1(AY507956|pid:none) Arabidopsis thaliana PHO1-like pro...    46   0.002
AE014134_3272(AE014134|pid:none) Drosophila melanogaster chromos...    45   0.004
AE014134_3273(AE014134|pid:none) Drosophila melanogaster chromos...    45   0.004
(A8DZH4) RecName: Full=Xenotropic and polytropic retrovirus rece...    45   0.004
BT022823_1(BT022823|pid:none) Drosophila melanogaster IP13250 fu...    45   0.004
(P40528) RecName: Full=Protein SYG1;  &S49931(S49931;S48245) &U1...    44   0.008
CR382136_571(CR382136|pid:none) Debaryomyces hansenii strain CBS...    44   0.008
CR382136_572(CR382136|pid:none) Debaryomyces hansenii strain CBS...    44   0.010
CR382127_25(CR382127|pid:none) Yarrowia lipolytica strain CLIB12...    42   0.029
AC150777_29(AC150777|pid:none) Medicago truncatula chromosome 7 ...    40   0.14
CU638743_359(CU638743|pid:none) Podospora anserina genomic DNA c...    40   0.14
FM992692_411(FM992692|pid:none) Candida dubliniensis CD36 chromo...    40   0.14
CR382139_1164(CR382139|pid:none) Debaryomyces hansenii chromosom...    39   0.24
FN392320_992(FN392320|pid:none) Pichia pastoris GS115 chromosome...    39   0.24
AE017198_1625(AE017198|pid:none) Lactobacillus johnsonii NCC 533...    39   0.32
AY507961_1(AY507961|pid:none) Arabidopsis thaliana PHO1-like pro...    38   0.41
AP000388_4(AP000388|pid:none) Arabidopsis thaliana genomic DNA, ...    38   0.41
CR382125_680(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    37   0.70
AE001437_767(AE001437|pid:none) Clostridium acetobutylicum ATCC ...    37   0.70
AP008971_685(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,...    37   0.70
AE014188_23(AE014188|pid:none) Plasmodium falciparum 3D7 chromos...    37   0.92
CR382123_147(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    37   0.92
AC005313_8(AC005313|pid:none) Arabidopsis thaliana chromosome 2 ...    37   1.2
CP000768_968(CP000768|pid:none) Campylobacter jejuni subsp. doyl...    37   1.2
AE001437_964(AE001437|pid:none) Clostridium acetobutylicum ATCC ...    37   1.2
AE014133_843(AE014133|pid:none) Streptococcus mutans UA159, comp...    37   1.2
CR382126_1172(CR382126|pid:none) Kluyveromyces lactis strain NRR...    37   1.2
AC140544_1(AC140544|pid:none) Medicago truncatula clone mth2-17g...    36   1.6
(P17442) RecName: Full=Phosphate system positive regulatory prot...    36   1.6
S72479(S72479) Nuc-2 protein - Neurospora crassa  &U51118_1(U511...    36   1.6
(Q01317) RecName: Full=Ankyrin repeat protein nuc-2;  &BX284754_...    36   1.6
AP009356_48(AP009356|pid:none) Onion yellows phytoplasma OY-W ge...    36   1.6
FN392319_1467(FN392319|pid:none) Pichia pastoris GS115 chromosom...    35   2.7
FN357369_17(FN357369|pid:none) Schistosoma mansoni genome sequen...    35   2.7
CP000413_1553(CP000413|pid:none) Lactobacillus gasseri ATCC 3332...    35   2.7
CR380952_90(CR380952|pid:none) Candida glabrata strain CBS138 ch...    35   2.7
(P25360) RecName: Full=Inorganic phosphate transporter PHO87;  &...    35   3.5
(Q60HE6) RecName: Full=Double-strand break repair protein MRE11A...    35   3.5
AE017243_346(AE017243|pid:none) Mycoplasma hyopneumoniae J, comp...    35   3.5
CR380958_285(CR380958|pid:none) Candida glabrata strain CBS138 c...    35   3.5
FM992688_187(FM992688|pid:none) Candida dubliniensis CD36 chromo...    35   3.5
CR940348_796(CR940348|pid:none) Theileria annulata strain Ankara...    35   3.5
MMBY7C(S12919;S19449) probable membrane protein YCR037c - yeast ...    35   3.5
AY144951_1(AY144951|pid:none) Saccharomyces castellii clone Cont...    35   3.5
AC003105_3(AC003105|pid:none) Arabidopsis thaliana chromosome 2 ...    35   4.6
BA000016_1221(BA000016|pid:none) Clostridium perfringens str. 13...    35   4.6
CP000976_647(CP000976|pid:none) Borrelia duttonii Ly, complete g...    35   4.6
(P49959) RecName: Full=Double-strand break repair protein MRE11A...    35   4.6
CP000814_885(CP000814|pid:none) Campylobacter jejuni subsp. jeju...    35   4.6
BC017823_1(BC017823|pid:none) Homo sapiens MRE11 meiotic recombi...    35   4.6
U37359_1(U37359|pid:none) Homo sapiens MRE11 homologue hMre11 mR...    35   4.6
(Q7NBC5) RecName: Full=Heat-inducible transcription repressor hr...    34   5.9
AE015450_354(AE015450|pid:none) Mycoplasma gallisepticum strain ...    34   5.9
BX538352_16(BX538352|pid:none) Cryptosporidium parvum chromosome...    34   5.9
CP000499_375(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...    34   5.9
CP000254_2757(CP000254|pid:none) Methanospirillum hungatei JF-1,...    34   5.9
AM457531_1(AM457531|pid:none) Vitis vinifera contig VV78X248900....    34   5.9
CP001251_1632(CP001251|pid:none) Dictyoglomus turgidum DSM 6724,...    34   7.8
(O94477) RecName: Full=Myosin-52; AltName: Full=Myosin type V-2;...    34   7.8
DQ306187_1(DQ306187|pid:none) Tetraodon nigroviridis odorant rec...    34   7.8
AE008691_1765(AE008691|pid:none) Thermoanaerobacter tengcongensi...    34   7.8
D89250_1(D89250|pid:none) Schizosaccharomyces pombe mRNA, partia...    34   7.8
AE017332_347(AE017332|pid:none) Mycoplasma hyopneumoniae 232, co...    34   7.8

>(Q54HI2) RecName: Full=SPX and EXS domain-containing protein 4;
          Length = 1081

 Score =  582 bits (1501), Expect = e-165
 Identities = 286/302 (94%), Positives = 288/302 (95%)
 Frame = +1

Query: 1    KLMESCTFTTKENFQTAFVDQVNKVDSFFVERYRKTKEKCVELCNMIPFLSTNEQLRTIR 180
            KLMESCTFTTKENFQTAFVDQVNKVDSFFVERYRKTKEKCVELCNMIPFLSTNEQLRTIR
Sbjct: 373  KLMESCTFTTKENFQTAFVDQVNKVDSFFVERYRKTKEKCVELCNMIPFLSTNEQLRTIR 432

Query: 181  NIEFVKQGFQDNYHYLESLEAFKELNIKGFKKVLEKYEKKNRIISSECRKYLENTRIFEN 360
            NIEFVKQGFQDNYHYLESLEAFKELNIKGFKKVLEKYEKKNRIISSECRKYLENTRIFEN
Sbjct: 433  NIEFVKQGFQDNYHYLESLEAFKELNIKGFKKVLEKYEKKNRIISSECRKYLENTRIFEN 492

Query: 361  DSPVRFLSHRIKHLYARYFTGNDVKLASNQIKTYAEDERFQKYNLFTIGLLIGVCIVLGI 540
            DSPVRFLSHRIKHLYARYFTGNDVKLASNQIKTYAEDERFQKYNLFTIGLLIGVCIVLGI
Sbjct: 493  DSPVRFLSHRIKHLYARYFTGNDVKLASNQIKTYAEDERFQKYNLFTIGLLIGVCIVLGI 552

Query: 541  QVVFNYYYYYPHEQPPIDSPLAWXXXXXXXXXXXXGTMFSLMSFIWEKSGINYVFIFEFK 720
            QVVFNYYYYYPHEQPPIDSPLAW            GTMFSLMSFIWEKSGINYVFIFEFK
Sbjct: 553  QVVFNYYYYYPHEQPPIDSPLAWLLFRISLLPILLGTMFSLMSFIWEKSGINYVFIFEFK 612

Query: 721  PDHKRSPGRYLKYGLIFNTLWLLALNLYIESTSHQNTTRYLXLIPIVFVLNTLIIGIQPF 900
            PDHKRSPGRYLKYGLIFNTLWLLALNLYI+S+SHQNTTRYL LIPIVFVL TLIIGIQPF
Sbjct: 613  PDHKRSPGRYLKYGLIFNTLWLLALNLYIDSSSHQNTTRYLILIPIVFVLITLIIGIQPF 672

Query: 901  PI 906
            PI
Sbjct: 673  PI 674

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,490,869,233
Number of extensions: 31025718
Number of successful extensions: 97714
Number of sequences better than 10.0: 103
Number of HSP's gapped: 97580
Number of HSP's successfully gapped: 120
Length of query: 302
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 174
Effective length of database: 636,901,312
Effective search space: 110820828288
Effective search space used: 110820828288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.71  gvh: 0.40  alm: 0.17  top: 0.43  tms: 0.20  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 20.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: nuclear

>> prediction for Contig-U13354-1 is end
VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0