Contig-U13351-1 |
Contig ID |
Contig-U13351-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1208 |
Chromosome number (1..6, M) |
- |
Chromosome length |
- |
Start point |
- |
End point |
- |
Strand (PLUS/MINUS) |
- |
Number of clones |
6 |
Number of EST |
6 |
Link to clone list |
U13351 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12. 8 |
Homology vs DNA |
Query= Contig-U13351-1 (Contig-U13351-1Q) /CSM_Contig/Contig-U13351-1Q.Seq.d (1208 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ346914) Dictyostelium discoideum cDNA clone:dda25d13, 3' ... 737 0.0 2 (BJ342317) Dictyostelium discoideum cDNA clone:dda13n12, 3' ... 737 0.0 2 (BJ376474) Dictyostelium discoideum cDNA clone:ddc28m18, 3' ... 472 e-129 2 (AU039909) Dictyostelium discoideum slug cDNA, clone SLG725. 472 e-128 2 (BJ376465) Dictyostelium discoideum cDNA clone:ddc28k18, 3' ... 460 e-125 1 (AU261825) Dictyostelium discoideum vegetative cDNA clone:VS... 349 2e-91 1 (BJ429100) Dictyostelium discoideum cDNA clone:ddv2i12, 3' e... 208 4e-49 1 (CO746205) tah90d10.x1 Hydra EST UCI 5 Hydra magnipapillata ... 64 2e-08 2 (CN628310) tae94e06.x1 Hydra EST Darmstadt I Hydra magnipapi... 64 2e-08 2 (CN628906) taf46e12.x1 Hydra EST Darmstadt I Hydra magnipapi... 64 2e-08 2 (CN630500) taf36b09.y1 Hydra EST Darmstadt I Hydra magnipapi... 64 2e-08 2 (CN628651) tae94e06.y1 Hydra EST Darmstadt I Hydra magnipapi... 64 2e-08 2 (CN631751) taf43g07.y1 Hydra EST Darmstadt I Hydra magnipapi... 64 2e-08 2 (CN629111) taf46e12.y1 Hydra EST Darmstadt I Hydra magnipapi... 64 2e-08 2 (CN773024) tae02g04.y1 Hydra EST Darmstadt I Hydra magnipapi... 64 2e-08 2 (DN816110) ACAC-aac23l21.g1 Hydra EST UCI 7 Hydra magnipapil... 64 1e-05 1 (DC050722) Xenopus laevis NBRP cDNA clone:xlk146n19ex, 5' end. 50 2e-04 2 (DC026979) Xenopus laevis NBRP cDNA clone:rxlk78g11ex, 3' end. 48 7e-04 2 (EB732186) AGENCOURT_77746122 NICHD_XGC_skin_m Xenopus laevi... 48 7e-04 2 (DC067785) Xenopus laevis NBRP cDNA clone:rxl227c13, 3' end. 48 8e-04 2 (DC097136) Xenopus laevis NBRP cDNA clone:rxl333j18, 3' end. 48 8e-04 2 (DC050766) Xenopus laevis NBRP cDNA clone:xlk146p20ex, 5' end. 48 8e-04 2 (DC076279) Xenopus laevis NBRP cDNA clone:rxl257f08, 3' end. 48 8e-04 2 (BF232345) de04f05.x1 Wellcome CRC pRN3 oocyte Xenopus laevi... 48 8e-04 2 (BP700172) Xenopus laevis NBRP cDNA clone:XL489n15ex, 5' end. 48 8e-04 2 (DC066922) Xenopus laevis NBRP cDNA clone:rxl224c19, 3' end. 48 8e-04 2 (DC091519) Xenopus laevis NBRP cDNA clone:rxl311m20, 3' end. 48 8e-04 2 (BJ630910) Xenopus laevis cDNA clone:XL167c24, 3' end. 48 8e-04 2 (CB942331) AGENCOURT_13851871 NICHD_XGC_Tad2 Xenopus laevis ... 48 8e-04 2 (BJ630356) Xenopus laevis cDNA clone:XL164p24, 3' end. 48 8e-04 2 (DY555649) AGENCOURT_71266167 NICHD_XGC_Ov1 Xenopus laevis c... 48 8e-04 2 (BJ076803) Xenopus laevis cDNA clone:XL058m24, 3' end, singl... 48 8e-04 2 (AW636270) bl44g08.w1 Blackshear/Soares normalized Xenopus e... 48 8e-04 2 (BJ632326) Xenopus laevis cDNA clone:XL174d02, 3' end. 48 8e-04 2 (BF049095) dc03h03.x1 Wellcome CRC pSK animal cap Xenopus la... 48 8e-04 2 (CN623992) tae58b03.y1 Hydra EST Darmstadt I Hydra magnipapi... 54 0.002 2 (CN629097) taf46d10.y1 Hydra EST Darmstadt I Hydra magnipapi... 54 0.003 2 (CN554167) tae33h05.y1 Hydra EST Darmstadt I Hydra magnipapi... 54 0.003 2 (BJ072440) Xenopus laevis cDNA clone:XL098j17, 5' end, singl... 46 0.003 2 (FG720567) G1144P342RL16.T0 Anolis carolinensis pooled norma... 56 0.003 1 (DT619280) ACAH-aaa72d07.g1 Hydra_EST_UCI-10 Hydra magnipapi... 54 0.004 2 (DC097401) Xenopus laevis NBRP cDNA clone:rxl334j18, 3' end. 44 0.011 2 (CN623701) tae58b03.x1 Hydra EST Darmstadt I Hydra magnipapi... 54 0.013 1 (CN554681) tae31h10.x1 Hydra EST Darmstadt I Hydra magnipapi... 54 0.013 1 (CN553896) tae33h05.x1 Hydra EST Darmstadt I Hydra magnipapi... 54 0.013 1 (CD528242) LeukoN3_4_B04.g1_A025 Unstimulated peripheral blo... 42 0.022 3 (AC010903) Homo sapiens BAC clone RP11-550H9 from 2, complet... 42 0.033 2 (CU694831) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 52 0.050 1 (AP006841) Bacteroides fragilis YCH46 DNA, complete genome. 36 0.098 2 (CR626927) Bacteroides fragilis NCTC 9343, complete genome. 36 0.098 2 (AR923054) Sequence 3691 from patent US 7090973. 36 0.15 2 (AC166706) Medicago truncatula clone mth2-160c2, complete se... 50 0.20 1 (AC150413) Branchiostoma floridae clone CH302-61A17, complet... 50 0.20 1 (AC202381) Medicago truncatula clone mth1-52p8, WORKING DRAF... 50 0.20 1 (AU270052) Dictyostelium discoideum vegetative cDNA clone:VS... 36 0.61 3 (AC132008) Homo sapiens 3 BAC RP11-594G13 (Roswell Park Canc... 48 0.78 1 (AC126183) Homo sapiens chromosome 3 clone RP11-535N19, *** ... 48 0.78 1 (AC069173) Homo sapiens chromosome 3 clone RP11-594G13 map 3... 48 0.78 1 (AC027041) Homo sapiens chromosome 3 clone RP11-728G2 map 3,... 48 0.78 1 (AC201353) Strongylocentrotus purpuratus clone R3-17A5, WORK... 48 0.78 1 (AC180862) Strongylocentrotus purpuratus clone R3-3069H13, W... 48 0.78 1 (AC179174) Strongylocentrotus purpuratus clone R3-4016K3, WO... 48 0.78 1 (AC168352) Strongylocentrotus purpuratus clone R3-56K4, WORK... 48 0.78 1 (ED742178) GM_WBb0104H12.r GM_WBb Glycine max genomic clone ... 48 0.78 1 (DX988352) CHORI103-8M5.TJ CHORI103 Schistosoma mansoni geno... 48 0.78 1 (DH463374) Monosiga ovata DNA, fosmid clone: MOF-003F03, gen... 48 0.78 1 (FC849482) CBHN5810.rev CBHN Metridium senile tentacle Metri... 48 0.78 1 (AC210516) Populus trichocarpa clone POP119-J20, complete se... 36 1.1 3 (CX633609) taj43g11.x3 Hydra EST UCI 5 Hydra magnipapillata ... 34 1.1 3 (BJ370444) Dictyostelium discoideum cDNA clone:ddc54l05, 5' ... 28 1.1 4 (DT607520) ACAG-aaa38f06.g1 Hydra_EST_UCI-9 Hydra magnipapil... 34 1.3 3 (EI740552) CHORI5146H16TR BAC library from the primary breas... 36 1.3 3 (DN243189) ACAD-aaa61c05.g1 Hydra_EST_UCI-8 Hydra magnipapil... 34 1.4 3 (AC211069) Solanum lycopersicum chromosome 6 clone C06HBa028... 46 1.5 3 (AC126271) Mus musculus BAC clone RP23-237H9 from chromosome... 36 1.6 2 (AC125048) Mus musculus BAC clone RP23-364E18 from 5, comple... 36 1.6 2 (AC181488) Strongylocentrotus purpuratus clone R3-51P17, WOR... 34 1.7 10 (BJ334144) Dictyostelium discoideum cDNA clone:dda45e09, 5' ... 28 1.8 4 (BJ370186) Dictyostelium discoideum cDNA clone:ddc53p03, 5' ... 28 1.8 4 (BJ339570) Dictyostelium discoideum cDNA clone:dda65g20, 5' ... 28 1.9 4 (BJ331779) Dictyostelium discoideum cDNA clone:dda36e03, 5' ... 28 2.0 4 (BJ392677) Dictyostelium discoideum cDNA clone:dds28d14, 5' ... 28 2.0 4 (BJ367324) Dictyostelium discoideum cDNA clone:ddc42c08, 5' ... 28 2.0 4 (BJ333013) Dictyostelium discoideum cDNA clone:dda41n01, 5' ... 28 2.0 4 (BJ331915) Dictyostelium discoideum cDNA clone:dda37d16, 5' ... 28 2.0 4 (BJ331639) Dictyostelium discoideum cDNA clone:dda36a13, 5' ... 28 2.0 4 (BJ396915) Dictyostelium discoideum cDNA clone:dds44m12, 5' ... 28 2.1 4 (AC174824) Cavia porcellus clone CH234-33F4, complete sequence. 40 2.1 4 (BJ331329) Dictyostelium discoideum cDNA clone:dda34j23, 5' ... 28 2.1 4 (BJ336998) Dictyostelium discoideum cDNA clone:dda55l20, 5' ... 28 2.1 4 (BF047131) dc03h03.y1 Wellcome CRC pSK animal cap Xenopus la... 36 2.1 2 (BJ337006) Dictyostelium discoideum cDNA clone:dda55n21, 5' ... 28 2.2 4 (AC106366) Rattus norvegicus clone CH230-120A15, *** SEQUENC... 38 2.2 8 (BJ396879) Dictyostelium discoideum cDNA clone:dds44d12, 5' ... 28 2.2 4 (CX554691) yda91a02.y2 Sea urchin EST Lib1 Strongylocentrotu... 40 2.3 2 (BJ393937) Dictyostelium discoideum cDNA clone:dds33o03, 5' ... 28 2.4 4 (BJ330956) Dictyostelium discoideum cDNA clone:dda33i09, 5' ... 28 2.4 4 (DR986229) JGI_AOKG2150.rev AOKG Acropora palmata spawned eg... 38 2.4 2 (DR986230) JGI_AOKG2150.fwd AOKG Acropora palmata spawned eg... 38 2.4 2 (DR985589) JGI_AOKG1323.fwd AOKG Acropora palmata spawned eg... 38 2.4 2
>(BJ346914) Dictyostelium discoideum cDNA clone:dda25d13, 3' end, single read. Length = 755
Score = 737 bits (372), Expect(2) = 0.0 Identities = 372/372 (100%) Strand = Plus / Minus
Query: 1 tactgttaaaagttgtgaagttgtacgtgataaagttacaaatgattcactttgttatgc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 676 tactgttaaaagttgtgaagttgtacgtgataaagttacaaatgattcactttgttatgc 617
Query: 61 ttttgttgaatattcaacaaaggaagaatgtgaaaaagcatatcttaaattggaaaatat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 616 ttttgttgaatattcaacaaaggaagaatgtgaaaaagcatatcttaaattggaaaatat 557
Query: 121 tttaattgatgaaagaagaatccatgtggatttttgtcaatcagttgcaaaagttagaaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 556 tttaattgatgaaagaagaatccatgtggatttttgtcaatcagttgcaaaagttagaaa 497
Query: 181 taatcaaaattcattaaaaaactttttaacaagaggcaaaggtggtagtggaagattgga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 496 taatcaaaattcattaaaaaactttttaacaagaggcaaaggtggtagtggaagattgga 437
Query: 241 tagaaaacatatattaaataaaaactaccaacaagaatcaggtacaaagggatataatta 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 436 tagaaaacatatattaaataaaaactaccaacaagaatcaggtacaaagggatataatta 377
Query: 301 tgttgatgatgatgatagaaattttaaaaagcagaaaagtaatgaaaaagactcaagaga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 376 tgttgatgatgatgatagaaattttaaaaagcagaaaagtaatgaaaaagactcaagaga 317
Query: 361 aagagatatgaa 372 |||||||||||| Sbjct: 316 aagagatatgaa 305
Score = 125 bits (63), Expect(2) = 0.0 Identities = 63/63 (100%) Strand = Plus / Minus
Query: 398 gaaagtgataaccgatacaaagatagaaatcatcatgacagaaattacaatagatcatat 457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 279 gaaagtgataaccgatacaaagatagaaatcatcatgacagaaattacaatagatcatat 220
Query: 458 gac 460 ||| Sbjct: 219 gac 217
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 937,115,129 Number of extensions: 65238047 Number of successful extensions: 6555444 Number of sequences better than 10.0: 184 Length of query: 1208 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1184 Effective length of database: 97,308,875,965 Effective search space: 115213709142560 Effective search space used: 115213709142560 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 6 |
Homology vs Protein |
Query= Contig-U13351-1 (Contig-U13351-1Q) /CSM_Contig/Contig-U13351-1Q.Seq.d (1208 letters)
Database: nrp_B 3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
BX248523_3(BX248523|pid:none) Zebrafish DNA sequence from clone ... 95 4e-18 AM910996_258(AM910996|pid:none) Plasmodium knowlesi strain H chr... 95 4e-18 BC056814_1(BC056814|pid:none) Danio rerio peptidylprolyl isomera... 95 4e-18 BC167357_1(BC167357|pid:none) Xenopus tropicalis peptidylprolyl ... 95 6e-18 AM270259_24(AM270259|pid:none) Aspergillus niger contig An12c002... 90 1e-16 AK014406_1(AK014406|pid:none) Mus musculus 12 days embryo embryo... 90 1e-16 AK017370_1(AK017370|pid:none) Mus musculus 6 days neonate head c... 90 1e-16 AK092069_1(AK092069|pid:none) Homo sapiens cDNA FLJ34750 fis, cl... 90 1e-16 AK012371_1(AK012371|pid:none) Mus musculus 11 days embryo whole ... 90 1e-16 BC064134_1(BC064134|pid:none) Homo sapiens peptidylprolyl isomer... 90 1e-16 (Q8WUA2) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 90 1e-16 AK167258_1(AK167258|pid:none) Mus musculus blastocyst blastocyst... 90 1e-16 (Q4IE79) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 87 9e-16 CR382131_1296(CR382131|pid:none) Yarrowia lipolytica strain CLIB... 87 9e-16 AK099323_1(AK099323|pid:none) Oryza sativa Japonica Group cDNA c... 87 9e-16 (Q2U256) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 87 9e-16 (Q5ARI5) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 86 3e-15 (Q4WAQ9) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 86 3e-15 AE014297_3780(AE014297|pid:none) Drosophila melanogaster chromos... 86 3e-15 AM920436_1196(AM920436|pid:none) Penicillium chrysogenum Wiscons... 86 3e-15 (Q5KNY5) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 85 6e-15 CU633447_37(CU633447|pid:none) Podospora anserina genomic DNA ch... 83 2e-14 AJ409115_1(AJ409115|pid:none) Paramecium tetraurelia macronuclea... 81 9e-14 AP003635_26(AP003635|pid:none) Oryza sativa Japonica Group genom... 80 1e-13 (P0C196) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 78 6e-13 AC159455_35(AC159455|pid:none) Trypanosoma brucei chromosome 5 c... 77 1e-12 CP001574_247(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 75 4e-12 Z81080_2(Z81080|pid:none) Caenorhabditis elegans Cosmid F39H2, c... 75 5e-12 T22008(T22008;T26011)hypothetical protein F39H2.2 - Caenorhabdit... 75 5e-12 Z81080_1(Z81080|pid:none) Caenorhabditis elegans Cosmid F39H2, c... 75 5e-12 AF364077_1(AF364077|pid:none) Pichia angusta putative peptidyl p... 71 7e-11 AC024260_6(AC024260|pid:none) Arabidopsis thaliana chromosome 1 ... 71 7e-11 CR954212_227(CR954212|pid:none) Ostreococcus tauri strain OTTH05... 70 2e-10 CP000592_235(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 70 2e-10 FN392319_128(FN392319|pid:none) Pichia pastoris GS115 chromosome... 65 5e-09 CR940352_301(CR940352|pid:none) Theileria annulata strain Ankara... 64 8e-09 AM502234_67(AM502234|pid:none) Leishmania infantum chromosome 16. 64 1e-08 CT005255_66(CT005255|pid:none) Leishmania major strain Friedlin,... 62 4e-08 AM494953_63(AM494953|pid:none) Leishmania braziliensis chromosom... 62 5e-08 BT067913_1(BT067913|pid:none) Zea mays full-length cDNA clone ZM... 51 7e-05 AC103551_5(AC103551|pid:none) Oryza sativa chromosome 3 BAC OSJN... 49 3e-04 FN357347_16(FN357347|pid:none) Schistosoma mansoni genome sequen... 48 8e-04 AC144459_16(AC144459|pid:none) Medicago truncatula clone mth2-23... 47 0.001 BT039077_1(BT039077|pid:none) Zea mays full-length cDNA clone ZM... 47 0.002 AE014134_533(AE014134|pid:none) Drosophila melanogaster chromoso... 47 0.002 BT043372_1(BT043372|pid:none) Zea mays full-length cDNA clone ZM... 47 0.002 AP008216_44(AP008216|pid:none) Oryza sativa (japonica cultivar-g... 46 0.002 DQ377062_1(DQ377062|pid:none) Oryza sativa (japonica cultivar-gr... 46 0.003 S55886_1(S55886|pid:none) Drosophila melanogaster RRM9 (rbp9) ge... 46 0.003 AE014134_536(AE014134|pid:none) Drosophila melanogaster chromoso... 45 0.004 (Q60900) RecName: Full=ELAV-like protein 3; AltName: Full=Hu-ant... 45 0.004 BC072716_1(BC072716|pid:none) Danio rerio zgc:91918, mRNA (cDNA ... 45 0.005 (Q16560) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 45 0.005 AL583843_2(AL583843|pid:none) Human DNA sequence from clone RP11... 45 0.007 AL627425_2(AL627425|pid:none) Mouse DNA sequence from clone RP23... 45 0.007 AB209294_1(AB209294|pid:none) Homo sapiens mRNA for ELAV (embryo... 45 0.007 AL837505_1(AL837505|pid:none) Mouse DNA sequence from clone RP23... 45 0.007 AY035379_1(AY035379|pid:none) Mus musculus ELAV-like neuronal pr... 45 0.007 AL627425_8(AL627425|pid:none) Mouse DNA sequence from clone RP23... 45 0.007 AL627425_4(AL627425|pid:none) Mouse DNA sequence from clone RP23... 45 0.007 BC099348_1(BC099348|pid:none) Xenopus laevis RNA-binding protein... 45 0.007 (P26378) RecName: Full=ELAV-like protein 4; AltName: Full=Parane... 45 0.007 AK298817_1(AK298817|pid:none) Homo sapiens cDNA FLJ51957 complet... 45 0.007 BC094189_1(BC094189|pid:none) Xenopus laevis ELAV (embryonic let... 45 0.007 I39077(I39077) RNA-binding protein Hel-N2 - human &U29943_1(U29... 45 0.007 AL837505_7(AL837505|pid:none) Mouse DNA sequence from clone RP23... 45 0.007 AK141919_1(AK141919|pid:none) Mus musculus 12 days embryo spinal... 45 0.007 AL583843_1(AL583843|pid:none) Human DNA sequence from clone RP11... 45 0.007 BC127338_1(BC127338|pid:none) Xenopus tropicalis ELAV (embryonic... 45 0.007 AY035378_1(AY035378|pid:none) Mus musculus ELAV-like neuronal pr... 45 0.007 AL837505_4(AL837505|pid:none) Mouse DNA sequence from clone RP23... 45 0.007 AF176675_1(AF176675|pid:none) Gallus gallus RNA-binding protein ... 45 0.007 CR860401_1(CR860401|pid:none) Pongo abelii mRNA; cDNA DKFZp459N1... 45 0.007 AL837505_6(AL837505|pid:none) Mouse DNA sequence from clone RP23... 45 0.007 AL837505_2(AL837505|pid:none) Mouse DNA sequence from clone RP23... 45 0.007 AF041341_1(AF041341|pid:none) Mus musculus RNA binding protein E... 45 0.007 BC170539_1(BC170539|pid:none) Xenopus laevis elav like 1, mRNA (... 45 0.007 AX463221_1(AX463221|pid:none) Sequence 22 from Patent WO0249625.... 45 0.007 (Q60899) RecName: Full=ELAV-like protein 2; AltName: Full=Hu-ant... 45 0.007 I51678(I51678) ribonucleoprotein - African clawed frog &U17599_... 45 0.007 AL583843_3(AL583843|pid:none) Human DNA sequence from clone RP11... 45 0.007 AL161628_3(AL161628|pid:none) Human DNA sequence from clone RP11... 45 0.007 AK014133_1(AK014133|pid:none) Mus musculus 13 days embryo head c... 45 0.007 (Q12926) RecName: Full=ELAV-like protein 2; AltName: Full=Hu-ant... 45 0.007 BC036071_1(BC036071|pid:none) Homo sapiens ELAV (embryonic letha... 45 0.007 (Q61701) RecName: Full=ELAV-like protein 4; AltName: Full=Parane... 45 0.007 AK079088_1(AK079088|pid:none) Mus musculus adult male diencephal... 45 0.007 AK099033_1(AK099033|pid:none) Oryza sativa Japonica Group cDNA c... 44 0.012 DQ215256_1(DQ215256|pid:none) Taeniopygia guttata clone 0058P005... 44 0.012 (Q1LZH0) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 44 0.012 AK070292_1(AK070292|pid:none) Oryza sativa Japonica Group cDNA c... 44 0.015 U21320_5(U21320|pid:none) Caenorhabditis elegans cosmid K04G7, c... 44 0.015 BC167878_1(BC167878|pid:none) Xenopus tropicalis cDNA clone MGC:... 44 0.015 AF357912_1(AF357912|pid:none) Labeo rohita ribonucleoprotein mRN... 44 0.015 FJ830866_1(FJ830866|pid:none) Capitella sp. I Grassle & Grassle,... 44 0.015 AC002335_10(AC002335|pid:none) Arabidopsis thaliana chromosome 2... 44 0.015 AY016023_9(AY016023|pid:none) Sphoeroides nephelus alpha globin ... 43 0.020 (Q05AT9) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 43 0.020 CR761704_1(CR761704|pid:none) Xenopus tropicalis finished cDNA, ... 43 0.020 AF176674_1(AF176674|pid:none) Gallus gallus RNA-binding protein ... 43 0.020 BC065343_1(BC065343|pid:none) Danio rerio ELAV (embryonic lethal... 43 0.020 BC136134_1(BC136134|pid:none) Xenopus tropicalis ELAV (embryonic... 43 0.020 AK248084_1(AK248084|pid:none) Dugesia japonica mRNA for snRNP70K... 43 0.026 AK089088_1(AK089088|pid:none) Mus musculus 2 days neonate thymus... 42 0.034 (P70372) RecName: Full=ELAV-like protein 1; AltName: Full=Hu-ant... 42 0.034 AK161667_1(AK161667|pid:none) Mus musculus 8 days embryo whole b... 42 0.034 AK034536_1(AK034536|pid:none) Mus musculus 12 days embryo embryo... 42 0.034 AF176673_1(AF176673|pid:none) Gallus gallus RNA-binding protein ... 42 0.044 AK301013_1(AK301013|pid:none) Homo sapiens cDNA FLJ60076 complet... 42 0.044 (Q66II8) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 42 0.044 AK039064_1(AK039064|pid:none) Mus musculus adult male hypothalam... 42 0.044 AK148528_1(AK148528|pid:none) Mus musculus adult pancreas islet ... 42 0.044 (Q9D384) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 42 0.044 AB168603_1(AB168603|pid:none) Macaca fascicularis testis cDNA cl... 42 0.044 BC102495_1(BC102495|pid:none) Bos taurus ELAV (embryonic lethal,... 42 0.044 DQ235162_1(DQ235162|pid:none) Solanum tuberosum clone 153C04 unk... 42 0.044 (Q5U1W5) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 42 0.057 (O13829) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 42 0.057 (Q08937) RecName: Full=29 kDa ribonucleoprotein B, chloroplastic... 42 0.057 BT066750_1(BT066750|pid:none) Zea mays full-length cDNA clone ZM... 42 0.057 EU953346_1(EU953346|pid:none) Zea mays clone 1400990 unknown mRNA. 42 0.057 BC004652_1(BC004652|pid:none) Mus musculus peptidylprolyl isomer... 42 0.057 EF146013_1(EF146013|pid:none) Populus trichocarpa clone WS0114_O... 42 0.057 BC016984_1(BC016984|pid:none) Homo sapiens peptidylprolyl isomer... 42 0.057 AY036909_1(AY036909|pid:none) Homo sapiens HUC (ELAVL3) mRNA, co... 41 0.075 AX463223_1(AX463223|pid:none) Sequence 24 from Patent WO0249625.... 41 0.075 BT068264_1(BT068264|pid:none) Zea mays full-length cDNA clone ZM... 41 0.097 AB008268_3(AB008268|pid:none) Arabidopsis thaliana genomic DNA, ... 41 0.097 BC086269_1(BC086269|pid:none) Xenopus laevis hypothetical LOC495... 41 0.097 (Q5JQF8) RecName: Full=Polyadenylate-binding protein 1-like 2; A... 41 0.097 AM454958_7(AM454958|pid:none) Vitis vinifera contig VV78X220407.... 41 0.097 BT084162_1(BT084162|pid:none) Zea mays full-length cDNA clone ZM... 41 0.097 M57939_2(M57939|pid:none) Human small nuclear ribonucleoprotein ... 41 0.097 BT038707_1(BT038707|pid:none) Zea mays full-length cDNA clone ZM... 41 0.097 AY751523_1(AY751523|pid:none) Paracentrotus lividus RNA-binding ... 40 0.13 AY170627_1(AY170627|pid:none) Oncorhynchus mykiss RNA-binding pr... 40 0.13 BT052763_1(BT052763|pid:none) Medicago truncatula clone MTYFH_FI... 40 0.13 FN357313_28(FN357313|pid:none) Schistosoma mansoni genome sequen... 40 0.13 CR940347_651(CR940347|pid:none) Theileria annulata strain Ankara... 40 0.13 CU633900_930(CU633900|pid:none) Podospora anserina genomic DNA c... 40 0.13 EU961409_1(EU961409|pid:none) Zea mays clone 235210 unknown mRNA. 40 0.17 AE014185_192(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 40 0.17 FN317772_1(FN317772|pid:none) Schistosoma japonicum isolate Anhu... 40 0.17 BC077089_1(BC077089|pid:none) Danio rerio small nuclear ribonucl... 40 0.17 (P49314) RecName: Full=31 kDa ribonucleoprotein, chloroplastic; ... 40 0.22 AY648811_1(AY648811|pid:none) Danio rerio U1 small ribonucleopro... 39 0.28 AE014298_202(AE014298|pid:none) Drosophila melanogaster chromoso... 39 0.28 AE014298_203(AE014298|pid:none) Drosophila melanogaster chromoso... 39 0.28 BT045701_1(BT045701|pid:none) Salmo salar clone ssal-rgf-529-045... 39 0.28 AB236848_1(AB236848|pid:none) Trifolium pratense RNA for putativ... 39 0.37 BT083094_1(BT083094|pid:none) Anoplopoma fimbria clone afim-evh-... 39 0.37 X85111_1(X85111|pid:none) X.laevis mRNA for XEL-1. 39 0.37 (Q9UE45) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 38 0.63 EF384209_1(EF384209|pid:none) Platynereis dumerilii Elav mRNA, c... 38 0.63 AY815316_1(AY815316|pid:none) Schistosoma japonicum SJCHGC02307 ... 38 0.63 BT033180_1(BT033180|pid:none) Zea mays full-length cDNA clone ZM... 38 0.63 BX548154_1(BX548154|pid:none) clone A24K23, A41I8 of Tetraodon n... 38 0.63 (Q62376) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 38 0.63 S04336(S04336) U1 snRNP 70K protein (long form) - mouse (fragmen... 38 0.63 BC167051_1(BC167051|pid:none) Rattus norvegicus U1 small nuclear... 38 0.63 BC044184_1(BC044184|pid:none) Danio rerio ELAV (embryonic lethal... 38 0.83 AC148484_5(AC148484|pid:none) Medicago truncatula clone mth2-46g... 38 0.83 BT074644_1(BT074644|pid:none) Osmerus mordax clone omor-rgc-516-... 38 0.83 AK293120_1(AK293120|pid:none) Homo sapiens cDNA FLJ77404 complet... 38 0.83 (Q55FQ0) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 38 0.83 (P09406) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 38 0.83 FN357349_16(FN357349|pid:none) Schistosoma mansoni genome sequen... 38 0.83 AP007157_730(AP007157|pid:none) Aspergillus oryzae RIB40 genomic... 38 0.83 AK092489_1(AK092489|pid:none) Homo sapiens cDNA FLJ35170 fis, cl... 37 1.1 FN357707_13(FN357707|pid:none) Schistosoma mansoni genome sequen... 37 1.1 AJ715415_1(AJ715415|pid:none) Bactrocera oleae mRNA for sex-leth... 37 1.1 EU960614_1(EU960614|pid:none) Zea mays clone 226607 splicing fac... 37 1.1 AB236858_1(AB236858|pid:none) Trifolium pratense RNA for putativ... 37 1.1 AB236770_1(AB236770|pid:none) Trifolium pratense RNA for putativ... 37 1.1 (A4QUF0) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 37 1.4 AP010656_534(AP010656|pid:none) Candidatus Azobacteroides pseudo... 37 1.4 (P49313) RecName: Full=30 kDa ribonucleoprotein, chloroplastic; ... 37 1.4 EF082899_1(EF082899|pid:none) Picea sitchensis clone WS0279_B19 ... 37 1.4 BC073641_1(BC073641|pid:none) Xenopus laevis MGC82977 protein, m... 37 1.4 EF087603_1(EF087603|pid:none) Picea sitchensis clone WS02729_L07... 37 1.4 AF026145_1(AF026145|pid:none) Ceratitis capitata sex-lethal homo... 37 1.4 BT025704_1(BT025704|pid:none) Arabidopsis thaliana At2g27330 mRN... 37 1.4 BT060465_1(BT060465|pid:none) Zea mays full-length cDNA clone ZM... 37 1.8 EF678280_1(EF678280|pid:none) Picea sitchensis clone WS02912_F09... 37 1.8 CU638744_475(CU638744|pid:none) Podospora anserina genomic DNA c... 37 1.8 (Q4KMD3) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 37 1.8 (Q6BI95) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 37 1.8 BC108447_1(BC108447|pid:none) Xenopus laevis U1 70K, mRNA (cDNA ... 37 1.8 BC097714_1(BC097714|pid:none) Xenopus laevis U1 70K, mRNA (cDNA ... 37 1.8 AE014298_1040(AE014298|pid:none) Drosophila melanogaster chromos... 36 2.4 BT003583_1(BT003583|pid:none) Drosophila melanogaster LD15933 fu... 36 2.4 BC065640_1(BC065640|pid:none) Danio rerio zgc:77282, mRNA (cDNA ... 36 2.4 AY299514_1(AY299514|pid:none) Danio rerio nil per os (npo) mRNA,... 36 2.4 AE014298_1044(AE014298|pid:none) Drosophila melanogaster chromos... 36 2.4 AE014298_1049(AE014298|pid:none) Drosophila melanogaster chromos... 36 2.4 AC120539_27(AC120539|pid:none) Oryza sativa (japonica cultivar-g... 36 2.4 B39725(B39725) sex-lethal sex determination protein MS11 - fruit... 36 2.4 AE014298_1041(AE014298|pid:none) Drosophila melanogaster chromos... 36 2.4 (Q24668) RecName: Full=Protein sex-lethal; 36 2.4 (Q2GSX8) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 36 2.4 BT038473_1(BT038473|pid:none) Zea mays full-length cDNA clone ZM... 36 2.4 A36311(A36311) 70K U1 small nuclear ribonucleoprotein - fruit fl... 36 3.1 BC046045_1(BC046045|pid:none) Danio rerio splicing factor, argin... 36 3.1 AJ000546_1(AJ000546|pid:none) Megaselia scalaris mRNA for Sex-le... 36 3.1 BT038475_1(BT038475|pid:none) Zea mays full-length cDNA clone ZM... 36 3.1 CR382131_452(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 36 3.1 AK067252_1(AK067252|pid:none) Oryza sativa Japonica Group cDNA c... 36 3.1 BC163877_1(BC163877|pid:none) Danio rerio RNA binding motif prot... 36 3.1 (P17133) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 36 3.1 EU955573_1(EU955573|pid:none) Zea mays clone 1537388 ribonucleop... 36 3.1 AY648773_1(AY648773|pid:none) Danio rerio KIAA0682-like mRNA, co... 36 3.1 BC090711_1(BC090711|pid:none) Danio rerio RNA binding motif prot... 36 3.1 (P42731) RecName: Full=Polyadenylate-binding protein 2; ... 36 3.1 AK011564_1(AK011564|pid:none) Mus musculus 10 days embryo whole ... 36 3.1 FN357605_9(FN357605|pid:none) Schistosoma mansoni genome sequenc... 36 3.1 X98769_1(X98769|pid:none) Megaselia scalaris mRNA for Sex-lethal... 35 4.1 AY814302_1(AY814302|pid:none) Schistosoma japonicum SJCHGC01826 ... 35 4.1 FJ438505_1(FJ438505|pid:none) Epinephelus coioides hyperosmotic ... 35 4.1 AF190655_1(AF190655|pid:none) Nicotiana tabacum poly(A)-binding ... 35 4.1 (Q0U1G2) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 35 4.1 AC148756_6(AC148756|pid:none) Medicago truncatula clone mth2-22d... 35 4.1 CP000478_83(CP000478|pid:none) Syntrophobacter fumaroxidans MPOB... 35 4.1 AY814541_1(AY814541|pid:none) Schistosoma japonicum clone SJCHGC... 35 4.1 DQ275613_1(DQ275613|pid:none) Exophiala dermatitidis Grp1p (GRP1... 35 4.1 AY313137_1(AY313137|pid:none) Saccoglossus kowalevskii Hu/elav m... 35 4.1 BT077560_1(BT077560|pid:none) Lepeophtheirus salmonis Pacific fo... 35 4.1 AY178581_1(AY178581|pid:none) Sciara ocellaris sex-lethal mRNA, ... 35 4.1 BT052605_1(BT052605|pid:none) Medicago truncatula clone MTYFD_FE... 35 4.1 EU960438_1(EU960438|pid:none) Zea mays clone 224893 arginine/ser... 35 5.3 (A5DM21) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 35 5.3 (P31209) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 35 5.3 CP000749_1521(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 35 5.3 AJ719598_1(AJ719598|pid:none) Gallus gallus mRNA for hypothetica... 35 5.3 M64603_1(M64603|pid:none) Schizosaccharomyces pombe poly(A)-bind... 35 5.3 AF389431_1(AF389431|pid:none) Solanum tuberosum single-stranded ... 35 5.3 AK342546_1(AK342546|pid:none) Acyrthosiphon pisum ACYPI010185 mR... 35 7.0 BT058726_1(BT058726|pid:none) Salmo salar clone ssal-rgf-001-131... 35 7.0 FN357917_1(FN357917|pid:none) Schistosoma mansoni genome sequenc... 35 7.0 AL844506_295(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 35 7.0 (P15771) RecName: Full=Nucleolin; AltName: Full=Protein C23; &D... 35 7.0 BT044808_1(BT044808|pid:none) Salmo salar clone ssal-rgf-504-108... 35 7.0 CP000733_1149(CP000733|pid:none) Coxiella burnetii Dugway 5J108-... 35 7.0 CP000890_1144(CP000890|pid:none) Coxiella burnetii RSA 331, comp... 35 7.0 AL844507_268(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 35 7.0 CP001160_235(CP001160|pid:none) Thalassiosira pseudonana CCMP133... 35 7.0 AF349964_1(AF349964|pid:none) Daucus carota poly(A)-binding prot... 35 7.0 Z68297_5(Z68297|pid:none) Caenorhabditis elegans Cosmid F11A10, ... 35 7.0 AF234183_1(AF234183|pid:none) Lucilia cuprina sex-lethal protein... 35 7.0 (O94290) RecName: Full=U2 snRNP component ist3; AltName: Full=RN... 35 7.0 AL732352_13(AL732352|pid:none) Oryza sativa genomic DNA, chromos... 34 9.1 FN357707_15(FN357707|pid:none) Schistosoma mansoni genome sequen... 34 9.1 FB912187_1(FB912187|pid:none) Sequence 131460 from Patent WO2008... 34 9.1 EF676928_1(EF676928|pid:none) Picea sitchensis clone WS02758_C10... 34 9.1 CP000127_2662(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 34 9.1 AM910996_196(AM910996|pid:none) Plasmodium knowlesi strain H chr... 34 9.1 AY538250_1(AY538250|pid:none) Bradysia coprophila sex-lethal (Sx... 34 9.1 FM992688_313(FM992688|pid:none) Candida dubliniensis CD36 chromo... 34 9.1 CR382131_372(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 34 9.1 (Q5AI15) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 34 9.1 EU797611_1(EU797611|pid:none) Ovis aries TRA2A mRNA, complete cds. 34 9.1 AP008210_2309(AP008210|pid:none) Oryza sativa (japonica cultivar... 34 9.1 CU633895_170(CU633895|pid:none) Podospora anserina genomic DNA c... 34 9.1
>BX248523_3(BX248523|pid:none) Zebrafish DNA sequence from clone CH211-257G8 in linkage group 20 Contains the ppil4 gene for peptidylprolyl isomerase (cyclophilin)-like 4, the map3k5 gene for mitogen-activated protein kinase kinase kinase 5, the 5' end of the gene for a novel protein similar to vertebrate cell division cycle 2-like 6 (CDK8-like) (CDC2L6), the amd1 gene for adenosylmethionine decarboxylase 1, the 5' end of a novel gene and six CpG islands, complete sequence. &BX545848_4(BX545848|pid:none) Length = 454
Score = 95.1 bits (235), Expect = 4e-18 Identities = 53/142 (37%), Positives = 77/142 (54%), Gaps = 1/142 (0%) Frame = +2
Query: 5 VKSCEVVRDKVTNDSLCYAFVEYSTKEECEKAYLKLENILIDERRIHVDFCQSVAKVRNN 184 +K CE++RD T +SLCYAF+E+ +E+CEKAY K++N+LID+RRIHVDF QSV+K++ Sbjct: 266 IKCCEIIRDWKTGESLCYAFIEFEKEEDCEKAYFKMDNVLIDDRRIHVDFSQSVSKIKWK 325
Query: 185 QNSLKNFLTRGKGGSGRLDRK-HILNKNYQQESGTKGYNYVDDDDRNFKKQKSNEKDSRE 361 K K LD K + K+ + Y + D+D + KD RE Sbjct: 326 GKGGKYTKDDFKAYEKDLDNKAKLALKDKVKSKQDSRYELLLDED-----EDDGRKDDRE 380
Query: 362 RDMKXXXXXXXXXXDNRYKDRN 427 + + D R KDR+ Sbjct: 381 KRERKRHSDSERTKDKRSKDRD 402
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3236559 Number of Hits to DB: 703,007,298 Number of extensions: 11049833 Number of successful extensions: 33956 Number of sequences better than 10.0: 262 Number of HSP's gapped: 33701 Number of HSP's successfully gapped: 265 Length of query: 402 Length of database: 1,051,180,864 Length adjustment: 131 Effective length of query: 271 Effective length of database: 627,191,635 Effective search space: 169968933085 Effective search space used: 169968933085 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
1 |
VH (FL, L) |
0 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
1 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
2 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |