Contig-U13351-1
Contig ID Contig-U13351-1
Contig update 2002.12.18
Contig sequence
>Contig-U13351-1 (Contig-U13351-1Q) /CSM_Contig/Contig-U13351-1Q.Seq.d
TACTGTTAAAAGTTGTGAAGTTGTACGTGATAAAGTTACAAATGATTCAC
TTTGTTATGCTTTTGTTGAATATTCAACAAAGGAAGAATGTGAAAAAGCA
TATCTTAAATTGGAAAATATTTTAATTGATGAAAGAAGAATCCATGTGGA
TTTTTGTCAATCAGTTGCAAAAGTTAGAAATAATCAAAATTCATTAAAAA
ACTTTTTAACAAGAGGCAAAGGTGGTAGTGGAAGATTGGATAGAAAACAT
ATATTAAATAAAAACTACCAACAAGAATCAGGTACAAAGGGATATAATTA
TGTTGATGATGATGATAGAAATTTTAAAAAGCAGAAAAGTAATGAAAAAG
ACTCAAGAGAAAGAGATATGAAATCATCATCATCTTCATCATCATCAGAA
AGTGATAACCGATACAAAGATAGAAATCATCATGACAGAAATTACAATAG
ATCATATGACAGAGATAATAGAAATAAAGATGATGAAAGAGAAAGAGATA
GAGAAAGAGACAGAGATAGAGATAGAGAAAAGGACAGGGACAGAGAAAGG
GAAAGAGAAAGAGATAGAGATAGAGATTATAAAGACAGCAGAGATAGAGA
TAGGGATAGAGATAGAGATAGAGACAGTAATAGAGAAAAAGATAGAGATA
GAGATTACAAAGATAGGGATAGAGAAAGGGATAGGGATAGAGAAAGAGAA
AGGGATAGAGATAGAGACTACAAAGATAGTAGTAGTAGAAGTGGTAGAGA
TAGAGAAAATGACCGTGATTCAAGAGACGGTCGTGATTCAAAAGATAATA
GAGATAGAGACTCCAAAGATAATAGAAGCAGAGATTCCAATAGAAGTAGC
AGTGATAGAGATAGTGGTCGTAGTAGAGGTAGTAGTGATAGAGACTATAA
GGATAGTAATGGTAAAGAAAGAGATAGCTCTTACAGATCTTCCTCCTCAT
CATCTTCTCATGATTCAAAATATAGAGAAAATAATAACAGCAGCGGCAGT
AGTAGTACTAGTAGTAGTAGTGGTAGTGGTAGTGGTAGAAGCAGTAGAGA
TAGAAGATAATAACAAATTATAATAATAAAAAAATAAAACAATAGTAACG
AAAAACACAAAACGATAAAAACAATTTAAAAATAAAAAGAAAATTAAAAA
ATTCAATAAAATTTATACAAATACATTGTATTAAACTTTTAATATATATT
TATACATA

Gap no gap
Contig length 1208
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 6
Number of EST 6
Link to clone list U13351
List of clone(s)

est1=AFG447Z,1,682
est2=VFA645Z,188,292
est3=CHD271Z,489,1010
est4=SLG725Z,553,1191
est5=CHD270Z,591,1005
est6=VSB117Z,822,1209
Translated Amino Acid sequence
TVKSCEVVRDKVTNDSLCYAFVEYSTKEECEKAYLKLENILIDERRIHVDFCQSVAKVRN
NQNSLKNFLTRGKGGSGRLDRKHILNKNYQQESGTKGYNYVDDDDRNFKKQKSNEKDSRE
RDMKSSSSSSSSESDNRYKDRNHHDRNYNRSYDRDNRNKDDERERDRERDRDRDREKDRD
RERERERDRDRDYKDSRDRDRDRDRDRDSNREKDRDRDYKDRDRERDRDRERERDRDRDY
KDSSSRSGRDRENDRDSRDGRDSKDNRDRDSKDNRSRDSNRSSSDRDSGRSRGSSDRDYK
DSNGKERDSSYRSSSSSSSHDSKYRENNNSSGSSSTSSSSGSGSGRSSRDRR**qiiiik
k*nnsnekhktikti*k*ken*kiq*nlykyivlnf*yifih


Translated Amino Acid sequence (All Frames)
Frame A:
yc*kl*sct**syk*ftllcfc*ifnkgrm*ksis*igkyfn**kknpcgflsiscks*k
*skfikklfnkrqrw*wkig*ktyik*klptrirykgi*lc*****kf*kaek**krlkr
kryeiiiifiiirk**piqr*kss*qklq*ii*qr**k*r**krkr*rkrqr*r*rkgqg
qrkgkrkr*r*rl*rqqr*r*g*r*r*rq**rkr*r*rlqr*g*rkg*g*rkrkg*r*rl
qr****kw*r*rk*p*fkrrs*fkr**r*rlqr**kqrfq*k*q**r*ws**r****rl*
g**w*rkr*llqiflliifs*fki*rk**qqrq**y****w*w*w*kq*r*kiitnynnk
kikq**rktqndknnlkikrklknsikfiqihciklliyiyt


Frame B:
TVKSCEVVRDKVTNDSLCYAFVEYSTKEECEKAYLKLENILIDERRIHVDFCQSVAKVRN
NQNSLKNFLTRGKGGSGRLDRKHILNKNYQQESGTKGYNYVDDDDRNFKKQKSNEKDSRE
RDMKSSSSSSSSESDNRYKDRNHHDRNYNRSYDRDNRNKDDERERDRERDRDRDREKDRD
RERERERDRDRDYKDSRDRDRDRDRDRDSNREKDRDRDYKDRDRERDRDRERERDRDRDY
KDSSSRSGRDRENDRDSRDGRDSKDNRDRDSKDNRSRDSNRSSSDRDSGRSRGSSDRDYK
DSNGKERDSSYRSSSSSSSHDSKYRENNNSSGSSSTSSSSGSGSGRSSRDRR**qiiiik
k*nnsnekhktikti*k*ken*kiq*nlykyivlnf*yifih


Frame C:
llkvvklyviklqmihfvmlllniqqrknvkkhilnwkif*lmkeesmwifvnqlqklei
ikih*ktf*qeakvvvedwieniy*ikttnknqvqrdiimlmmmieilksrkvmkktqek
ei*nhhhlhhhqkvitdtkieiimteitidhmteiieikmmkekeieketeieiekrtgt
ekgkekeieieiiktaeieigieieietviekkieieitkigiekgigiekekgieiett
kivvvevveiekmtviqetvviqkiieietpkiieaeipievavieivvvvevvvietir
ivmvkkeialtdlpphhllmiqniekiitaaavvvlvvvvvvvvveaveiednnkl***k
nktivtkntkr*kqfknkkkikkfnkiytntly*tfniylyi


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U13351-1 (Contig-U13351-1Q)
/CSM_Contig/Contig-U13351-1Q.Seq.d
(1208 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U13351-1 (Contig-U13351-1Q) /CSM_Contig/Conti... 737 0.0
Contig-U08024-1 (Contig-U08024-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U12276-1 (Contig-U12276-1Q) /CSM_Contig/Conti... 36 0.085
Contig-U12057-1 (Contig-U12057-1Q) /CSM_Contig/Conti... 36 0.085
Contig-U11934-1 (Contig-U11934-1Q) /CSM_Contig/Conti... 36 0.085
Contig-U11911-1 (Contig-U11911-1Q) /CSM_Contig/Conti... 36 0.085
Contig-U11767-1 (Contig-U11767-1Q) /CSM_Contig/Conti... 36 0.085
Contig-U11759-1 (Contig-U11759-1Q) /CSM_Contig/Conti... 36 0.085
Contig-U11314-1 (Contig-U11314-1Q) /CSM_Contig/Conti... 36 0.085

>Contig-U13351-1 (Contig-U13351-1Q) /CSM_Contig/Contig-U13351-1Q.Seq.d
Length = 1208

Score = 737 bits (372), Expect = 0.0
Identities = 372/372 (100%)
Strand = Plus / Plus


Query: 1 tactgttaaaagttgtgaagttgtacgtgataaagttacaaatgattcactttgttatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tactgttaaaagttgtgaagttgtacgtgataaagttacaaatgattcactttgttatgc 60


Query: 61 ttttgttgaatattcaacaaaggaagaatgtgaaaaagcatatcttaaattggaaaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttttgttgaatattcaacaaaggaagaatgtgaaaaagcatatcttaaattggaaaatat 120


Query: 121 tttaattgatgaaagaagaatccatgtggatttttgtcaatcagttgcaaaagttagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttaattgatgaaagaagaatccatgtggatttttgtcaatcagttgcaaaagttagaaa 180


Query: 181 taatcaaaattcattaaaaaactttttaacaagaggcaaaggtggtagtggaagattgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taatcaaaattcattaaaaaactttttaacaagaggcaaaggtggtagtggaagattgga 240


Query: 241 tagaaaacatatattaaataaaaactaccaacaagaatcaggtacaaagggatataatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagaaaacatatattaaataaaaactaccaacaagaatcaggtacaaagggatataatta 300


Query: 301 tgttgatgatgatgatagaaattttaaaaagcagaaaagtaatgaaaaagactcaagaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgttgatgatgatgatagaaattttaaaaagcagaaaagtaatgaaaaagactcaagaga 360


Query: 361 aagagatatgaa 372
||||||||||||
Sbjct: 361 aagagatatgaa 372


Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus


Query: 700 aagggatagagatagagactacaaagatagtagtagtagaagtggtagagatagagaaaa 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 aagggatagagatagagactacaaagatagtagtagtagaagtggtagagatagagaaaa 759


Query: 760 tgaccgtgattcaagagacggtcgtgattcaaaagataatagagatagagactccaaaga 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 tgaccgtgattcaagagacggtcgtgattcaaaagataatagagatagagactccaaaga 819


Query: 820 taatagaagcagagattccaatagaagtagcagtgatagagatagtggtcgtagtagagg 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 taatagaagcagagattccaatagaagtagcagtgatagagatagtggtcgtagtagagg 879


Query: 880 tagtagtgatagagactataaggatagtaatggtaaagaaagagatagctcttacagatc 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 tagtagtgatagagactataaggatagtaatggtaaagaaagagatagctcttacagatc 939


Query: 940 ttcctcctcatcatcttctcatgattcaaaatatagagaaaataataacagcagcgg 996
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 ttcctcctcatcatcttctcatgattcaaaatatagagaaaataataacagcagcgg 996


Score = 125 bits (63), Expect = 1e-28
Identities = 63/63 (100%)
Strand = Plus / Plus


Query: 398 gaaagtgataaccgatacaaagatagaaatcatcatgacagaaattacaatagatcatat 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gaaagtgataaccgatacaaagatagaaatcatcatgacagaaattacaatagatcatat 457


Query: 458 gac 460
|||
Sbjct: 458 gac 460


Score = 91.7 bits (46), Expect = 2e-18
Identities = 46/46 (100%)
Strand = Plus / Plus


Query: 1163 ttatacaaatacattgtattaaacttttaatatatatttatacata 1208
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1163 ttatacaaatacattgtattaaacttttaatatatatttatacata 1208


Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus


Query: 704 gatagagatagagactacaaagatag 729
|||||||||||||| |||||||||||
Sbjct: 641 gatagagatagagattacaaagatag 666


Score = 40.1 bits (20), Expect = 0.005
Identities = 20/20 (100%)
Strand = Plus / Minus


Query: 62 tttgttgaatattcaacaaa 81
||||||||||||||||||||
Sbjct: 81 tttgttgaatattcaacaaa 62


Score = 36.2 bits (18), Expect = 0.085
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 1039 aagcagtagagatagaag 1056
||||||||||||||||||
Sbjct: 1039 aagcagtagagatagaag 1056


Score = 34.2 bits (17), Expect = 0.34
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 701 agggatagagatagaga 717
|||||||||||||||||
Sbjct: 602 agggatagagatagaga 618


Score = 32.2 bits (16), Expect = 1.3
Identities = 22/24 (91%)
Strand = Plus / Plus


Query: 798 atagagatagagactccaaagata 821
||||||||||||| | ||||||||
Sbjct: 642 atagagatagagattacaaagata 665


Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 745 tagagatagagaaaa 759
|||||||||||||||
Sbjct: 517 tagagatagagaaaa 531


Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 704 gatagagatagagac 718
|||||||||||||||
Sbjct: 611 gatagagatagagac 625


Score = 30.2 bits (15), Expect = 5.3
Identities = 21/23 (91%)
Strand = Plus / Plus


Query: 704 gatagagatagagactacaaaga 726
|||||||||||||| || |||||
Sbjct: 563 gatagagatagagattataaaga 585


>Contig-U08024-1 (Contig-U08024-1Q) /CSM_Contig/Contig-U08024-1Q.Seq.d
Length = 1400

Score = 38.2 bits (19), Expect = 0.022
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 736 tagaagtggtagagatagagaaa 758
|||||||| ||||||||||||||
Sbjct: 894 tagaagtgatagagatagagaaa 916


Score = 36.2 bits (18), Expect = 0.085
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 355 aagagaaagagatatgaa 372
||||||||||||||||||
Sbjct: 498 aagagaaagagatatgaa 515


Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 301 tgttgatgatgatgat 316
||||||||||||||||
Sbjct: 1349 tgttgatgatgatgat 1334


Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 125 attgatgaaagaagaa 140
||||||||||||||||
Sbjct: 1249 attgatgaaagaagaa 1264


>Contig-U12276-1 (Contig-U12276-1Q) /CSM_Contig/Contig-U12276-1Q.Seq.d
Length = 1061

Score = 36.2 bits (18), Expect = 0.085
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 188 aattcattaaaaaacttt 205
||||||||||||||||||
Sbjct: 117 aattcattaaaaaacttt 134


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,268
Number of Sequences: 6905
Number of extensions: 16268
Number of successful extensions: 2925
Number of sequences better than 10.0: 267
length of query: 1208
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1192
effective length of database: 5,564,391
effective search space: 6632754072
effective search space used: 6632754072
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 8
Homology vs DNA
Query= Contig-U13351-1 (Contig-U13351-1Q) /CSM_Contig/Contig-U13351-1Q.Seq.d
(1208 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ346914) Dictyostelium discoideum cDNA clone:dda25d13, 3' ... 737 0.0 2
(BJ342317) Dictyostelium discoideum cDNA clone:dda13n12, 3' ... 737 0.0 2
(BJ376474) Dictyostelium discoideum cDNA clone:ddc28m18, 3' ... 472 e-129 2
(AU039909) Dictyostelium discoideum slug cDNA, clone SLG725. 472 e-128 2
(BJ376465) Dictyostelium discoideum cDNA clone:ddc28k18, 3' ... 460 e-125 1
(AU261825) Dictyostelium discoideum vegetative cDNA clone:VS... 349 2e-91 1
(BJ429100) Dictyostelium discoideum cDNA clone:ddv2i12, 3' e... 208 4e-49 1
(CO746205) tah90d10.x1 Hydra EST UCI 5 Hydra magnipapillata ... 64 2e-08 2
(CN628310) tae94e06.x1 Hydra EST Darmstadt I Hydra magnipapi... 64 2e-08 2
(CN628906) taf46e12.x1 Hydra EST Darmstadt I Hydra magnipapi... 64 2e-08 2
(CN630500) taf36b09.y1 Hydra EST Darmstadt I Hydra magnipapi... 64 2e-08 2
(CN628651) tae94e06.y1 Hydra EST Darmstadt I Hydra magnipapi... 64 2e-08 2
(CN631751) taf43g07.y1 Hydra EST Darmstadt I Hydra magnipapi... 64 2e-08 2
(CN629111) taf46e12.y1 Hydra EST Darmstadt I Hydra magnipapi... 64 2e-08 2
(CN773024) tae02g04.y1 Hydra EST Darmstadt I Hydra magnipapi... 64 2e-08 2
(DN816110) ACAC-aac23l21.g1 Hydra EST UCI 7 Hydra magnipapil... 64 1e-05 1
(DC050722) Xenopus laevis NBRP cDNA clone:xlk146n19ex, 5' end. 50 2e-04 2
(DC026979) Xenopus laevis NBRP cDNA clone:rxlk78g11ex, 3' end. 48 7e-04 2
(EB732186) AGENCOURT_77746122 NICHD_XGC_skin_m Xenopus laevi... 48 7e-04 2
(DC067785) Xenopus laevis NBRP cDNA clone:rxl227c13, 3' end. 48 8e-04 2
(DC097136) Xenopus laevis NBRP cDNA clone:rxl333j18, 3' end. 48 8e-04 2
(DC050766) Xenopus laevis NBRP cDNA clone:xlk146p20ex, 5' end. 48 8e-04 2
(DC076279) Xenopus laevis NBRP cDNA clone:rxl257f08, 3' end. 48 8e-04 2
(BF232345) de04f05.x1 Wellcome CRC pRN3 oocyte Xenopus laevi... 48 8e-04 2
(BP700172) Xenopus laevis NBRP cDNA clone:XL489n15ex, 5' end. 48 8e-04 2
(DC066922) Xenopus laevis NBRP cDNA clone:rxl224c19, 3' end. 48 8e-04 2
(DC091519) Xenopus laevis NBRP cDNA clone:rxl311m20, 3' end. 48 8e-04 2
(BJ630910) Xenopus laevis cDNA clone:XL167c24, 3' end. 48 8e-04 2
(CB942331) AGENCOURT_13851871 NICHD_XGC_Tad2 Xenopus laevis ... 48 8e-04 2
(BJ630356) Xenopus laevis cDNA clone:XL164p24, 3' end. 48 8e-04 2
(DY555649) AGENCOURT_71266167 NICHD_XGC_Ov1 Xenopus laevis c... 48 8e-04 2
(BJ076803) Xenopus laevis cDNA clone:XL058m24, 3' end, singl... 48 8e-04 2
(AW636270) bl44g08.w1 Blackshear/Soares normalized Xenopus e... 48 8e-04 2
(BJ632326) Xenopus laevis cDNA clone:XL174d02, 3' end. 48 8e-04 2
(BF049095) dc03h03.x1 Wellcome CRC pSK animal cap Xenopus la... 48 8e-04 2
(CN623992) tae58b03.y1 Hydra EST Darmstadt I Hydra magnipapi... 54 0.002 2
(CN629097) taf46d10.y1 Hydra EST Darmstadt I Hydra magnipapi... 54 0.003 2
(CN554167) tae33h05.y1 Hydra EST Darmstadt I Hydra magnipapi... 54 0.003 2
(BJ072440) Xenopus laevis cDNA clone:XL098j17, 5' end, singl... 46 0.003 2
(FG720567) G1144P342RL16.T0 Anolis carolinensis pooled norma... 56 0.003 1
(DT619280) ACAH-aaa72d07.g1 Hydra_EST_UCI-10 Hydra magnipapi... 54 0.004 2
(DC097401) Xenopus laevis NBRP cDNA clone:rxl334j18, 3' end. 44 0.011 2
(CN623701) tae58b03.x1 Hydra EST Darmstadt I Hydra magnipapi... 54 0.013 1
(CN554681) tae31h10.x1 Hydra EST Darmstadt I Hydra magnipapi... 54 0.013 1
(CN553896) tae33h05.x1 Hydra EST Darmstadt I Hydra magnipapi... 54 0.013 1
(CD528242) LeukoN3_4_B04.g1_A025 Unstimulated peripheral blo... 42 0.022 3
(AC010903) Homo sapiens BAC clone RP11-550H9 from 2, complet... 42 0.033 2
(CU694831) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 52 0.050 1
(AP006841) Bacteroides fragilis YCH46 DNA, complete genome. 36 0.098 2
(CR626927) Bacteroides fragilis NCTC 9343, complete genome. 36 0.098 2
(AR923054) Sequence 3691 from patent US 7090973. 36 0.15 2
(AC166706) Medicago truncatula clone mth2-160c2, complete se... 50 0.20 1
(AC150413) Branchiostoma floridae clone CH302-61A17, complet... 50 0.20 1
(AC202381) Medicago truncatula clone mth1-52p8, WORKING DRAF... 50 0.20 1
(AU270052) Dictyostelium discoideum vegetative cDNA clone:VS... 36 0.61 3
(AC132008) Homo sapiens 3 BAC RP11-594G13 (Roswell Park Canc... 48 0.78 1
(AC126183) Homo sapiens chromosome 3 clone RP11-535N19, *** ... 48 0.78 1
(AC069173) Homo sapiens chromosome 3 clone RP11-594G13 map 3... 48 0.78 1
(AC027041) Homo sapiens chromosome 3 clone RP11-728G2 map 3,... 48 0.78 1
(AC201353) Strongylocentrotus purpuratus clone R3-17A5, WORK... 48 0.78 1
(AC180862) Strongylocentrotus purpuratus clone R3-3069H13, W... 48 0.78 1
(AC179174) Strongylocentrotus purpuratus clone R3-4016K3, WO... 48 0.78 1
(AC168352) Strongylocentrotus purpuratus clone R3-56K4, WORK... 48 0.78 1
(ED742178) GM_WBb0104H12.r GM_WBb Glycine max genomic clone ... 48 0.78 1
(DX988352) CHORI103-8M5.TJ CHORI103 Schistosoma mansoni geno... 48 0.78 1
(DH463374) Monosiga ovata DNA, fosmid clone: MOF-003F03, gen... 48 0.78 1
(FC849482) CBHN5810.rev CBHN Metridium senile tentacle Metri... 48 0.78 1
(AC210516) Populus trichocarpa clone POP119-J20, complete se... 36 1.1 3
(CX633609) taj43g11.x3 Hydra EST UCI 5 Hydra magnipapillata ... 34 1.1 3
(BJ370444) Dictyostelium discoideum cDNA clone:ddc54l05, 5' ... 28 1.1 4
(DT607520) ACAG-aaa38f06.g1 Hydra_EST_UCI-9 Hydra magnipapil... 34 1.3 3
(EI740552) CHORI5146H16TR BAC library from the primary breas... 36 1.3 3
(DN243189) ACAD-aaa61c05.g1 Hydra_EST_UCI-8 Hydra magnipapil... 34 1.4 3
(AC211069) Solanum lycopersicum chromosome 6 clone C06HBa028... 46 1.5 3
(AC126271) Mus musculus BAC clone RP23-237H9 from chromosome... 36 1.6 2
(AC125048) Mus musculus BAC clone RP23-364E18 from 5, comple... 36 1.6 2
(AC181488) Strongylocentrotus purpuratus clone R3-51P17, WOR... 34 1.7 10
(BJ334144) Dictyostelium discoideum cDNA clone:dda45e09, 5' ... 28 1.8 4
(BJ370186) Dictyostelium discoideum cDNA clone:ddc53p03, 5' ... 28 1.8 4
(BJ339570) Dictyostelium discoideum cDNA clone:dda65g20, 5' ... 28 1.9 4
(BJ331779) Dictyostelium discoideum cDNA clone:dda36e03, 5' ... 28 2.0 4
(BJ392677) Dictyostelium discoideum cDNA clone:dds28d14, 5' ... 28 2.0 4
(BJ367324) Dictyostelium discoideum cDNA clone:ddc42c08, 5' ... 28 2.0 4
(BJ333013) Dictyostelium discoideum cDNA clone:dda41n01, 5' ... 28 2.0 4
(BJ331915) Dictyostelium discoideum cDNA clone:dda37d16, 5' ... 28 2.0 4
(BJ331639) Dictyostelium discoideum cDNA clone:dda36a13, 5' ... 28 2.0 4
(BJ396915) Dictyostelium discoideum cDNA clone:dds44m12, 5' ... 28 2.1 4
(AC174824) Cavia porcellus clone CH234-33F4, complete sequence. 40 2.1 4
(BJ331329) Dictyostelium discoideum cDNA clone:dda34j23, 5' ... 28 2.1 4
(BJ336998) Dictyostelium discoideum cDNA clone:dda55l20, 5' ... 28 2.1 4
(BF047131) dc03h03.y1 Wellcome CRC pSK animal cap Xenopus la... 36 2.1 2
(BJ337006) Dictyostelium discoideum cDNA clone:dda55n21, 5' ... 28 2.2 4
(AC106366) Rattus norvegicus clone CH230-120A15, *** SEQUENC... 38 2.2 8
(BJ396879) Dictyostelium discoideum cDNA clone:dds44d12, 5' ... 28 2.2 4
(CX554691) yda91a02.y2 Sea urchin EST Lib1 Strongylocentrotu... 40 2.3 2
(BJ393937) Dictyostelium discoideum cDNA clone:dds33o03, 5' ... 28 2.4 4
(BJ330956) Dictyostelium discoideum cDNA clone:dda33i09, 5' ... 28 2.4 4
(DR986229) JGI_AOKG2150.rev AOKG Acropora palmata spawned eg... 38 2.4 2
(DR986230) JGI_AOKG2150.fwd AOKG Acropora palmata spawned eg... 38 2.4 2
(DR985589) JGI_AOKG1323.fwd AOKG Acropora palmata spawned eg... 38 2.4 2

>(BJ346914) Dictyostelium discoideum cDNA clone:dda25d13, 3' end,
single read.
Length = 755

Score = 737 bits (372), Expect(2) = 0.0
Identities = 372/372 (100%)
Strand = Plus / Minus


Query: 1 tactgttaaaagttgtgaagttgtacgtgataaagttacaaatgattcactttgttatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tactgttaaaagttgtgaagttgtacgtgataaagttacaaatgattcactttgttatgc 617


Query: 61 ttttgttgaatattcaacaaaggaagaatgtgaaaaagcatatcttaaattggaaaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttttgttgaatattcaacaaaggaagaatgtgaaaaagcatatcttaaattggaaaatat 557


Query: 121 tttaattgatgaaagaagaatccatgtggatttttgtcaatcagttgcaaaagttagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tttaattgatgaaagaagaatccatgtggatttttgtcaatcagttgcaaaagttagaaa 497


Query: 181 taatcaaaattcattaaaaaactttttaacaagaggcaaaggtggtagtggaagattgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 taatcaaaattcattaaaaaactttttaacaagaggcaaaggtggtagtggaagattgga 437


Query: 241 tagaaaacatatattaaataaaaactaccaacaagaatcaggtacaaagggatataatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tagaaaacatatattaaataaaaactaccaacaagaatcaggtacaaagggatataatta 377


Query: 301 tgttgatgatgatgatagaaattttaaaaagcagaaaagtaatgaaaaagactcaagaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgttgatgatgatgatagaaattttaaaaagcagaaaagtaatgaaaaagactcaagaga 317


Query: 361 aagagatatgaa 372
||||||||||||
Sbjct: 316 aagagatatgaa 305

Score = 125 bits (63), Expect(2) = 0.0
Identities = 63/63 (100%)
Strand = Plus / Minus


Query: 398 gaaagtgataaccgatacaaagatagaaatcatcatgacagaaattacaatagatcatat 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gaaagtgataaccgatacaaagatagaaatcatcatgacagaaattacaatagatcatat 220


Query: 458 gac 460
|||
Sbjct: 219 gac 217

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 937,115,129
Number of extensions: 65238047
Number of successful extensions: 6555444
Number of sequences better than 10.0: 184
Length of query: 1208
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1184
Effective length of database: 97,308,875,965
Effective search space: 115213709142560
Effective search space used: 115213709142560
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 6
Homology vs Protein
Query= Contig-U13351-1 (Contig-U13351-1Q) /CSM_Contig/Contig-U13351-1Q.Seq.d
(1208 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BX248523_3(BX248523|pid:none) Zebrafish DNA sequence from clone ... 95 4e-18
AM910996_258(AM910996|pid:none) Plasmodium knowlesi strain H chr... 95 4e-18
BC056814_1(BC056814|pid:none) Danio rerio peptidylprolyl isomera... 95 4e-18
BC167357_1(BC167357|pid:none) Xenopus tropicalis peptidylprolyl ... 95 6e-18
AM270259_24(AM270259|pid:none) Aspergillus niger contig An12c002... 90 1e-16
AK014406_1(AK014406|pid:none) Mus musculus 12 days embryo embryo... 90 1e-16
AK017370_1(AK017370|pid:none) Mus musculus 6 days neonate head c... 90 1e-16
AK092069_1(AK092069|pid:none) Homo sapiens cDNA FLJ34750 fis, cl... 90 1e-16
AK012371_1(AK012371|pid:none) Mus musculus 11 days embryo whole ... 90 1e-16
BC064134_1(BC064134|pid:none) Homo sapiens peptidylprolyl isomer... 90 1e-16
(Q8WUA2) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 90 1e-16
AK167258_1(AK167258|pid:none) Mus musculus blastocyst blastocyst... 90 1e-16
(Q4IE79) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 87 9e-16
CR382131_1296(CR382131|pid:none) Yarrowia lipolytica strain CLIB... 87 9e-16
AK099323_1(AK099323|pid:none) Oryza sativa Japonica Group cDNA c... 87 9e-16
(Q2U256) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 87 9e-16
(Q5ARI5) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 86 3e-15
(Q4WAQ9) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 86 3e-15
AE014297_3780(AE014297|pid:none) Drosophila melanogaster chromos... 86 3e-15
AM920436_1196(AM920436|pid:none) Penicillium chrysogenum Wiscons... 86 3e-15
(Q5KNY5) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 85 6e-15
CU633447_37(CU633447|pid:none) Podospora anserina genomic DNA ch... 83 2e-14
AJ409115_1(AJ409115|pid:none) Paramecium tetraurelia macronuclea... 81 9e-14
AP003635_26(AP003635|pid:none) Oryza sativa Japonica Group genom... 80 1e-13
(P0C196) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 78 6e-13
AC159455_35(AC159455|pid:none) Trypanosoma brucei chromosome 5 c... 77 1e-12
CP001574_247(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 75 4e-12
Z81080_2(Z81080|pid:none) Caenorhabditis elegans Cosmid F39H2, c... 75 5e-12
T22008(T22008;T26011)hypothetical protein F39H2.2 - Caenorhabdit... 75 5e-12
Z81080_1(Z81080|pid:none) Caenorhabditis elegans Cosmid F39H2, c... 75 5e-12
AF364077_1(AF364077|pid:none) Pichia angusta putative peptidyl p... 71 7e-11
AC024260_6(AC024260|pid:none) Arabidopsis thaliana chromosome 1 ... 71 7e-11
CR954212_227(CR954212|pid:none) Ostreococcus tauri strain OTTH05... 70 2e-10
CP000592_235(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 70 2e-10
FN392319_128(FN392319|pid:none) Pichia pastoris GS115 chromosome... 65 5e-09
CR940352_301(CR940352|pid:none) Theileria annulata strain Ankara... 64 8e-09
AM502234_67(AM502234|pid:none) Leishmania infantum chromosome 16. 64 1e-08
CT005255_66(CT005255|pid:none) Leishmania major strain Friedlin,... 62 4e-08
AM494953_63(AM494953|pid:none) Leishmania braziliensis chromosom... 62 5e-08
BT067913_1(BT067913|pid:none) Zea mays full-length cDNA clone ZM... 51 7e-05
AC103551_5(AC103551|pid:none) Oryza sativa chromosome 3 BAC OSJN... 49 3e-04
FN357347_16(FN357347|pid:none) Schistosoma mansoni genome sequen... 48 8e-04
AC144459_16(AC144459|pid:none) Medicago truncatula clone mth2-23... 47 0.001
BT039077_1(BT039077|pid:none) Zea mays full-length cDNA clone ZM... 47 0.002
AE014134_533(AE014134|pid:none) Drosophila melanogaster chromoso... 47 0.002
BT043372_1(BT043372|pid:none) Zea mays full-length cDNA clone ZM... 47 0.002
AP008216_44(AP008216|pid:none) Oryza sativa (japonica cultivar-g... 46 0.002
DQ377062_1(DQ377062|pid:none) Oryza sativa (japonica cultivar-gr... 46 0.003
S55886_1(S55886|pid:none) Drosophila melanogaster RRM9 (rbp9) ge... 46 0.003
AE014134_536(AE014134|pid:none) Drosophila melanogaster chromoso... 45 0.004
(Q60900) RecName: Full=ELAV-like protein 3; AltName: Full=Hu-ant... 45 0.004
BC072716_1(BC072716|pid:none) Danio rerio zgc:91918, mRNA (cDNA ... 45 0.005
(Q16560) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 45 0.005
AL583843_2(AL583843|pid:none) Human DNA sequence from clone RP11... 45 0.007
AL627425_2(AL627425|pid:none) Mouse DNA sequence from clone RP23... 45 0.007
AB209294_1(AB209294|pid:none) Homo sapiens mRNA for ELAV (embryo... 45 0.007
AL837505_1(AL837505|pid:none) Mouse DNA sequence from clone RP23... 45 0.007
AY035379_1(AY035379|pid:none) Mus musculus ELAV-like neuronal pr... 45 0.007
AL627425_8(AL627425|pid:none) Mouse DNA sequence from clone RP23... 45 0.007
AL627425_4(AL627425|pid:none) Mouse DNA sequence from clone RP23... 45 0.007
BC099348_1(BC099348|pid:none) Xenopus laevis RNA-binding protein... 45 0.007
(P26378) RecName: Full=ELAV-like protein 4; AltName: Full=Parane... 45 0.007
AK298817_1(AK298817|pid:none) Homo sapiens cDNA FLJ51957 complet... 45 0.007
BC094189_1(BC094189|pid:none) Xenopus laevis ELAV (embryonic let... 45 0.007
I39077(I39077) RNA-binding protein Hel-N2 - human &U29943_1(U29... 45 0.007
AL837505_7(AL837505|pid:none) Mouse DNA sequence from clone RP23... 45 0.007
AK141919_1(AK141919|pid:none) Mus musculus 12 days embryo spinal... 45 0.007
AL583843_1(AL583843|pid:none) Human DNA sequence from clone RP11... 45 0.007
BC127338_1(BC127338|pid:none) Xenopus tropicalis ELAV (embryonic... 45 0.007
AY035378_1(AY035378|pid:none) Mus musculus ELAV-like neuronal pr... 45 0.007
AL837505_4(AL837505|pid:none) Mouse DNA sequence from clone RP23... 45 0.007
AF176675_1(AF176675|pid:none) Gallus gallus RNA-binding protein ... 45 0.007
CR860401_1(CR860401|pid:none) Pongo abelii mRNA; cDNA DKFZp459N1... 45 0.007
AL837505_6(AL837505|pid:none) Mouse DNA sequence from clone RP23... 45 0.007
AL837505_2(AL837505|pid:none) Mouse DNA sequence from clone RP23... 45 0.007
AF041341_1(AF041341|pid:none) Mus musculus RNA binding protein E... 45 0.007
BC170539_1(BC170539|pid:none) Xenopus laevis elav like 1, mRNA (... 45 0.007
AX463221_1(AX463221|pid:none) Sequence 22 from Patent WO0249625.... 45 0.007
(Q60899) RecName: Full=ELAV-like protein 2; AltName: Full=Hu-ant... 45 0.007
I51678(I51678) ribonucleoprotein - African clawed frog &U17599_... 45 0.007
AL583843_3(AL583843|pid:none) Human DNA sequence from clone RP11... 45 0.007
AL161628_3(AL161628|pid:none) Human DNA sequence from clone RP11... 45 0.007
AK014133_1(AK014133|pid:none) Mus musculus 13 days embryo head c... 45 0.007
(Q12926) RecName: Full=ELAV-like protein 2; AltName: Full=Hu-ant... 45 0.007
BC036071_1(BC036071|pid:none) Homo sapiens ELAV (embryonic letha... 45 0.007
(Q61701) RecName: Full=ELAV-like protein 4; AltName: Full=Parane... 45 0.007
AK079088_1(AK079088|pid:none) Mus musculus adult male diencephal... 45 0.007
AK099033_1(AK099033|pid:none) Oryza sativa Japonica Group cDNA c... 44 0.012
DQ215256_1(DQ215256|pid:none) Taeniopygia guttata clone 0058P005... 44 0.012
(Q1LZH0) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 44 0.012
AK070292_1(AK070292|pid:none) Oryza sativa Japonica Group cDNA c... 44 0.015
U21320_5(U21320|pid:none) Caenorhabditis elegans cosmid K04G7, c... 44 0.015
BC167878_1(BC167878|pid:none) Xenopus tropicalis cDNA clone MGC:... 44 0.015
AF357912_1(AF357912|pid:none) Labeo rohita ribonucleoprotein mRN... 44 0.015
FJ830866_1(FJ830866|pid:none) Capitella sp. I Grassle & Grassle,... 44 0.015
AC002335_10(AC002335|pid:none) Arabidopsis thaliana chromosome 2... 44 0.015
AY016023_9(AY016023|pid:none) Sphoeroides nephelus alpha globin ... 43 0.020
(Q05AT9) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 43 0.020
CR761704_1(CR761704|pid:none) Xenopus tropicalis finished cDNA, ... 43 0.020
AF176674_1(AF176674|pid:none) Gallus gallus RNA-binding protein ... 43 0.020
BC065343_1(BC065343|pid:none) Danio rerio ELAV (embryonic lethal... 43 0.020
BC136134_1(BC136134|pid:none) Xenopus tropicalis ELAV (embryonic... 43 0.020
AK248084_1(AK248084|pid:none) Dugesia japonica mRNA for snRNP70K... 43 0.026
AK089088_1(AK089088|pid:none) Mus musculus 2 days neonate thymus... 42 0.034
(P70372) RecName: Full=ELAV-like protein 1; AltName: Full=Hu-ant... 42 0.034
AK161667_1(AK161667|pid:none) Mus musculus 8 days embryo whole b... 42 0.034
AK034536_1(AK034536|pid:none) Mus musculus 12 days embryo embryo... 42 0.034
AF176673_1(AF176673|pid:none) Gallus gallus RNA-binding protein ... 42 0.044
AK301013_1(AK301013|pid:none) Homo sapiens cDNA FLJ60076 complet... 42 0.044
(Q66II8) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 42 0.044
AK039064_1(AK039064|pid:none) Mus musculus adult male hypothalam... 42 0.044
AK148528_1(AK148528|pid:none) Mus musculus adult pancreas islet ... 42 0.044
(Q9D384) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 42 0.044
AB168603_1(AB168603|pid:none) Macaca fascicularis testis cDNA cl... 42 0.044
BC102495_1(BC102495|pid:none) Bos taurus ELAV (embryonic lethal,... 42 0.044
DQ235162_1(DQ235162|pid:none) Solanum tuberosum clone 153C04 unk... 42 0.044
(Q5U1W5) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 42 0.057
(O13829) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 42 0.057
(Q08937) RecName: Full=29 kDa ribonucleoprotein B, chloroplastic... 42 0.057
BT066750_1(BT066750|pid:none) Zea mays full-length cDNA clone ZM... 42 0.057
EU953346_1(EU953346|pid:none) Zea mays clone 1400990 unknown mRNA. 42 0.057
BC004652_1(BC004652|pid:none) Mus musculus peptidylprolyl isomer... 42 0.057
EF146013_1(EF146013|pid:none) Populus trichocarpa clone WS0114_O... 42 0.057
BC016984_1(BC016984|pid:none) Homo sapiens peptidylprolyl isomer... 42 0.057
AY036909_1(AY036909|pid:none) Homo sapiens HUC (ELAVL3) mRNA, co... 41 0.075
AX463223_1(AX463223|pid:none) Sequence 24 from Patent WO0249625.... 41 0.075
BT068264_1(BT068264|pid:none) Zea mays full-length cDNA clone ZM... 41 0.097
AB008268_3(AB008268|pid:none) Arabidopsis thaliana genomic DNA, ... 41 0.097
BC086269_1(BC086269|pid:none) Xenopus laevis hypothetical LOC495... 41 0.097
(Q5JQF8) RecName: Full=Polyadenylate-binding protein 1-like 2; A... 41 0.097
AM454958_7(AM454958|pid:none) Vitis vinifera contig VV78X220407.... 41 0.097
BT084162_1(BT084162|pid:none) Zea mays full-length cDNA clone ZM... 41 0.097
M57939_2(M57939|pid:none) Human small nuclear ribonucleoprotein ... 41 0.097
BT038707_1(BT038707|pid:none) Zea mays full-length cDNA clone ZM... 41 0.097
AY751523_1(AY751523|pid:none) Paracentrotus lividus RNA-binding ... 40 0.13
AY170627_1(AY170627|pid:none) Oncorhynchus mykiss RNA-binding pr... 40 0.13
BT052763_1(BT052763|pid:none) Medicago truncatula clone MTYFH_FI... 40 0.13
FN357313_28(FN357313|pid:none) Schistosoma mansoni genome sequen... 40 0.13
CR940347_651(CR940347|pid:none) Theileria annulata strain Ankara... 40 0.13
CU633900_930(CU633900|pid:none) Podospora anserina genomic DNA c... 40 0.13
EU961409_1(EU961409|pid:none) Zea mays clone 235210 unknown mRNA. 40 0.17
AE014185_192(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 40 0.17
FN317772_1(FN317772|pid:none) Schistosoma japonicum isolate Anhu... 40 0.17
BC077089_1(BC077089|pid:none) Danio rerio small nuclear ribonucl... 40 0.17
(P49314) RecName: Full=31 kDa ribonucleoprotein, chloroplastic; ... 40 0.22
AY648811_1(AY648811|pid:none) Danio rerio U1 small ribonucleopro... 39 0.28
AE014298_202(AE014298|pid:none) Drosophila melanogaster chromoso... 39 0.28
AE014298_203(AE014298|pid:none) Drosophila melanogaster chromoso... 39 0.28
BT045701_1(BT045701|pid:none) Salmo salar clone ssal-rgf-529-045... 39 0.28
AB236848_1(AB236848|pid:none) Trifolium pratense RNA for putativ... 39 0.37
BT083094_1(BT083094|pid:none) Anoplopoma fimbria clone afim-evh-... 39 0.37
X85111_1(X85111|pid:none) X.laevis mRNA for XEL-1. 39 0.37
(Q9UE45) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 38 0.63
EF384209_1(EF384209|pid:none) Platynereis dumerilii Elav mRNA, c... 38 0.63
AY815316_1(AY815316|pid:none) Schistosoma japonicum SJCHGC02307 ... 38 0.63
BT033180_1(BT033180|pid:none) Zea mays full-length cDNA clone ZM... 38 0.63
BX548154_1(BX548154|pid:none) clone A24K23, A41I8 of Tetraodon n... 38 0.63
(Q62376) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 38 0.63
S04336(S04336) U1 snRNP 70K protein (long form) - mouse (fragmen... 38 0.63
BC167051_1(BC167051|pid:none) Rattus norvegicus U1 small nuclear... 38 0.63
BC044184_1(BC044184|pid:none) Danio rerio ELAV (embryonic lethal... 38 0.83
AC148484_5(AC148484|pid:none) Medicago truncatula clone mth2-46g... 38 0.83
BT074644_1(BT074644|pid:none) Osmerus mordax clone omor-rgc-516-... 38 0.83
AK293120_1(AK293120|pid:none) Homo sapiens cDNA FLJ77404 complet... 38 0.83
(Q55FQ0) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 38 0.83
(P09406) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 38 0.83
FN357349_16(FN357349|pid:none) Schistosoma mansoni genome sequen... 38 0.83
AP007157_730(AP007157|pid:none) Aspergillus oryzae RIB40 genomic... 38 0.83
AK092489_1(AK092489|pid:none) Homo sapiens cDNA FLJ35170 fis, cl... 37 1.1
FN357707_13(FN357707|pid:none) Schistosoma mansoni genome sequen... 37 1.1
AJ715415_1(AJ715415|pid:none) Bactrocera oleae mRNA for sex-leth... 37 1.1
EU960614_1(EU960614|pid:none) Zea mays clone 226607 splicing fac... 37 1.1
AB236858_1(AB236858|pid:none) Trifolium pratense RNA for putativ... 37 1.1
AB236770_1(AB236770|pid:none) Trifolium pratense RNA for putativ... 37 1.1
(A4QUF0) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 37 1.4
AP010656_534(AP010656|pid:none) Candidatus Azobacteroides pseudo... 37 1.4
(P49313) RecName: Full=30 kDa ribonucleoprotein, chloroplastic; ... 37 1.4
EF082899_1(EF082899|pid:none) Picea sitchensis clone WS0279_B19 ... 37 1.4
BC073641_1(BC073641|pid:none) Xenopus laevis MGC82977 protein, m... 37 1.4
EF087603_1(EF087603|pid:none) Picea sitchensis clone WS02729_L07... 37 1.4
AF026145_1(AF026145|pid:none) Ceratitis capitata sex-lethal homo... 37 1.4
BT025704_1(BT025704|pid:none) Arabidopsis thaliana At2g27330 mRN... 37 1.4
BT060465_1(BT060465|pid:none) Zea mays full-length cDNA clone ZM... 37 1.8
EF678280_1(EF678280|pid:none) Picea sitchensis clone WS02912_F09... 37 1.8
CU638744_475(CU638744|pid:none) Podospora anserina genomic DNA c... 37 1.8
(Q4KMD3) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 37 1.8
(Q6BI95) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 37 1.8
BC108447_1(BC108447|pid:none) Xenopus laevis U1 70K, mRNA (cDNA ... 37 1.8
BC097714_1(BC097714|pid:none) Xenopus laevis U1 70K, mRNA (cDNA ... 37 1.8
AE014298_1040(AE014298|pid:none) Drosophila melanogaster chromos... 36 2.4
BT003583_1(BT003583|pid:none) Drosophila melanogaster LD15933 fu... 36 2.4
BC065640_1(BC065640|pid:none) Danio rerio zgc:77282, mRNA (cDNA ... 36 2.4
AY299514_1(AY299514|pid:none) Danio rerio nil per os (npo) mRNA,... 36 2.4
AE014298_1044(AE014298|pid:none) Drosophila melanogaster chromos... 36 2.4
AE014298_1049(AE014298|pid:none) Drosophila melanogaster chromos... 36 2.4
AC120539_27(AC120539|pid:none) Oryza sativa (japonica cultivar-g... 36 2.4
B39725(B39725) sex-lethal sex determination protein MS11 - fruit... 36 2.4
AE014298_1041(AE014298|pid:none) Drosophila melanogaster chromos... 36 2.4
(Q24668) RecName: Full=Protein sex-lethal; 36 2.4
(Q2GSX8) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 36 2.4
BT038473_1(BT038473|pid:none) Zea mays full-length cDNA clone ZM... 36 2.4
A36311(A36311) 70K U1 small nuclear ribonucleoprotein - fruit fl... 36 3.1
BC046045_1(BC046045|pid:none) Danio rerio splicing factor, argin... 36 3.1
AJ000546_1(AJ000546|pid:none) Megaselia scalaris mRNA for Sex-le... 36 3.1
BT038475_1(BT038475|pid:none) Zea mays full-length cDNA clone ZM... 36 3.1
CR382131_452(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 36 3.1
AK067252_1(AK067252|pid:none) Oryza sativa Japonica Group cDNA c... 36 3.1
BC163877_1(BC163877|pid:none) Danio rerio RNA binding motif prot... 36 3.1
(P17133) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 36 3.1
EU955573_1(EU955573|pid:none) Zea mays clone 1537388 ribonucleop... 36 3.1
AY648773_1(AY648773|pid:none) Danio rerio KIAA0682-like mRNA, co... 36 3.1
BC090711_1(BC090711|pid:none) Danio rerio RNA binding motif prot... 36 3.1
(P42731) RecName: Full=Polyadenylate-binding protein 2; ... 36 3.1
AK011564_1(AK011564|pid:none) Mus musculus 10 days embryo whole ... 36 3.1
FN357605_9(FN357605|pid:none) Schistosoma mansoni genome sequenc... 36 3.1
X98769_1(X98769|pid:none) Megaselia scalaris mRNA for Sex-lethal... 35 4.1
AY814302_1(AY814302|pid:none) Schistosoma japonicum SJCHGC01826 ... 35 4.1
FJ438505_1(FJ438505|pid:none) Epinephelus coioides hyperosmotic ... 35 4.1
AF190655_1(AF190655|pid:none) Nicotiana tabacum poly(A)-binding ... 35 4.1
(Q0U1G2) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 35 4.1
AC148756_6(AC148756|pid:none) Medicago truncatula clone mth2-22d... 35 4.1
CP000478_83(CP000478|pid:none) Syntrophobacter fumaroxidans MPOB... 35 4.1
AY814541_1(AY814541|pid:none) Schistosoma japonicum clone SJCHGC... 35 4.1
DQ275613_1(DQ275613|pid:none) Exophiala dermatitidis Grp1p (GRP1... 35 4.1
AY313137_1(AY313137|pid:none) Saccoglossus kowalevskii Hu/elav m... 35 4.1
BT077560_1(BT077560|pid:none) Lepeophtheirus salmonis Pacific fo... 35 4.1
AY178581_1(AY178581|pid:none) Sciara ocellaris sex-lethal mRNA, ... 35 4.1
BT052605_1(BT052605|pid:none) Medicago truncatula clone MTYFD_FE... 35 4.1
EU960438_1(EU960438|pid:none) Zea mays clone 224893 arginine/ser... 35 5.3
(A5DM21) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 35 5.3
(P31209) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 35 5.3
CP000749_1521(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 35 5.3
AJ719598_1(AJ719598|pid:none) Gallus gallus mRNA for hypothetica... 35 5.3
M64603_1(M64603|pid:none) Schizosaccharomyces pombe poly(A)-bind... 35 5.3
AF389431_1(AF389431|pid:none) Solanum tuberosum single-stranded ... 35 5.3
AK342546_1(AK342546|pid:none) Acyrthosiphon pisum ACYPI010185 mR... 35 7.0
BT058726_1(BT058726|pid:none) Salmo salar clone ssal-rgf-001-131... 35 7.0
FN357917_1(FN357917|pid:none) Schistosoma mansoni genome sequenc... 35 7.0
AL844506_295(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 35 7.0
(P15771) RecName: Full=Nucleolin; AltName: Full=Protein C23; &D... 35 7.0
BT044808_1(BT044808|pid:none) Salmo salar clone ssal-rgf-504-108... 35 7.0
CP000733_1149(CP000733|pid:none) Coxiella burnetii Dugway 5J108-... 35 7.0
CP000890_1144(CP000890|pid:none) Coxiella burnetii RSA 331, comp... 35 7.0
AL844507_268(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 35 7.0
CP001160_235(CP001160|pid:none) Thalassiosira pseudonana CCMP133... 35 7.0
AF349964_1(AF349964|pid:none) Daucus carota poly(A)-binding prot... 35 7.0
Z68297_5(Z68297|pid:none) Caenorhabditis elegans Cosmid F11A10, ... 35 7.0
AF234183_1(AF234183|pid:none) Lucilia cuprina sex-lethal protein... 35 7.0
(O94290) RecName: Full=U2 snRNP component ist3; AltName: Full=RN... 35 7.0
AL732352_13(AL732352|pid:none) Oryza sativa genomic DNA, chromos... 34 9.1
FN357707_15(FN357707|pid:none) Schistosoma mansoni genome sequen... 34 9.1
FB912187_1(FB912187|pid:none) Sequence 131460 from Patent WO2008... 34 9.1
EF676928_1(EF676928|pid:none) Picea sitchensis clone WS02758_C10... 34 9.1
CP000127_2662(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 34 9.1
AM910996_196(AM910996|pid:none) Plasmodium knowlesi strain H chr... 34 9.1
AY538250_1(AY538250|pid:none) Bradysia coprophila sex-lethal (Sx... 34 9.1
FM992688_313(FM992688|pid:none) Candida dubliniensis CD36 chromo... 34 9.1
CR382131_372(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 34 9.1
(Q5AI15) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 34 9.1
EU797611_1(EU797611|pid:none) Ovis aries TRA2A mRNA, complete cds. 34 9.1
AP008210_2309(AP008210|pid:none) Oryza sativa (japonica cultivar... 34 9.1
CU633895_170(CU633895|pid:none) Podospora anserina genomic DNA c... 34 9.1

>BX248523_3(BX248523|pid:none) Zebrafish DNA sequence from clone
CH211-257G8 in linkage group 20 Contains the ppil4 gene
for peptidylprolyl isomerase (cyclophilin)-like 4, the
map3k5 gene for mitogen-activated protein kinase kinase
kinase 5, the 5' end of the gene for a novel protein
similar to vertebrate cell division cycle 2-like 6
(CDK8-like) (CDC2L6), the amd1 gene for
adenosylmethionine decarboxylase 1, the 5' end of a
novel gene and six CpG islands, complete sequence.
&BX545848_4(BX545848|pid:none)
Length = 454

Score = 95.1 bits (235), Expect = 4e-18
Identities = 53/142 (37%), Positives = 77/142 (54%), Gaps = 1/142 (0%)
Frame = +2

Query: 5 VKSCEVVRDKVTNDSLCYAFVEYSTKEECEKAYLKLENILIDERRIHVDFCQSVAKVRNN 184
+K CE++RD T +SLCYAF+E+ +E+CEKAY K++N+LID+RRIHVDF QSV+K++
Sbjct: 266 IKCCEIIRDWKTGESLCYAFIEFEKEEDCEKAYFKMDNVLIDDRRIHVDFSQSVSKIKWK 325

Query: 185 QNSLKNFLTRGKGGSGRLDRK-HILNKNYQQESGTKGYNYVDDDDRNFKKQKSNEKDSRE 361
K K LD K + K+ + Y + D+D + KD RE
Sbjct: 326 GKGGKYTKDDFKAYEKDLDNKAKLALKDKVKSKQDSRYELLLDED-----EDDGRKDDRE 380

Query: 362 RDMKXXXXXXXXXXDNRYKDRN 427
+ + D R KDR+
Sbjct: 381 KRERKRHSDSERTKDKRSKDRD 402

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 703,007,298
Number of extensions: 11049833
Number of successful extensions: 33956
Number of sequences better than 10.0: 262
Number of HSP's gapped: 33701
Number of HSP's successfully gapped: 265
Length of query: 402
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 271
Effective length of database: 627,191,635
Effective search space: 169968933085
Effective search space used: 169968933085
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.70 gvh: 0.30 alm: 0.55 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: Golgi

>> prediction for Contig-U13351-1 is nuc

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0