>Contig-U13336-1 (Contig-U13336-1Q) /CSM_Contig/Contig-U13336-1Q.Seq.d
GTAGAATCAACTGAAGCTCCAGCTCAATCATCAGCTGCCGAACAACAAGC
ACCAGCAGAATCAACTGAAGCCCCAGCTCAATCATCAGCTGCTGAACAAC
AAGCACCAGCAGAATCAAATGAAGCACCAGCTCAATCATCAGCTGCCGAA
CAATCAGCAGAATCAAATGAAGCACCAGCTCAATCATCAGCTGCTGAACA
ACAAGCACCAGCAGAATCAAATGAAGCTCCAGCTCAATCATCAGCTGCCG
AACAACCAGCAGAATCAAATGAAGCACCAGCTCAATCATCCTCAACTGTA
GAACAACCACCAGCTGAATCATCAGCTGCACCAGAAGCAACAGAAGTTCC
AGCTGAATCTGCTGAACAACCAACTGAATCATCAAATGCTGAACAACAAC
AAACTGACTCACAACAACCAACTCAATCATCAGGTGAAGAACAACAACAA
CCAACTGATTCACAACAACAACCAACTGATTCACAACAACAAACAACTGA
TTCACAACAACAACAAACATCAGAATCATCAAATCCAACCCAATCATCAG
GTGAACAACAACCAACCGAATCATCAAATGCTGAACAACCAACTGATTCA
CAACAACCACCAGCAGAATCATCATCAGCC

est1=SLE608F,1,631

VESTEAPAQSSAAEQQAPAESTEAPAQSSAAEQQAPAESNEAPAQSSAAEQSAESNEAPA
QSSAAEQQAPAESNEAPAQSSAAEQPAESNEAPAQSSSTVEQPPAESSAAPEATEVPAES
AEQPTESSNAEQQQTDSQQPTQSSGEEQQQPTDSQQQPTDSQQQTTDSQQQQTSESSNPT
QSSGEQQPTESSNAEQPTDSQQPPAESSSA

Frame A:
VESTEAPAQSSAAEQQAPAESTEAPAQSSAAEQQAPAESNEAPAQSSAAEQSAESNEAPA
QSSAAEQQAPAESNEAPAQSSAAEQPAESNEAPAQSSSTVEQPPAESSAAPEATEVPAES
AEQPTESSNAEQQQTDSQQPTQSSGEEQQQPTDSQQQPTDSQQQTTDSQQQQTSESSNPT
QSSGEQQPTESSNAEQPTDSQQPPAESSSA


Frame B:
*nqlklqlnhqlpnnkhqqnqlkpqlnhqllnnkhqqnqmkhqlnhqlpnnqqnqmkhql
nhqllnnkhqqnqmklqlnhqlpnnqqnqmkhqlnhpql*nnhqlnhqlhqkqqkfqlnl
lnnqlnhqmlnnnklthnnqlnhqvknnnnqlihnnnqlihnnkqlihnnnkhqnhqiqp
nhqvnnnqpnhqmlnnqlihnnhqqnhhq


Frame C:
rin*ssssiiscrttstsrin*spssiisc*ttstsrik*stssiiscrtisrik*stss
iisc*ttstsrik*ssssiiscrttsrik*stssiilncrttts*iisctrsnrsss*ic
*ttn*iikc*tttn*ltttnsiir*rttttn*fttttn*ftttnn*fttttniriiksnp
iir*tttnriikc*ttn*fttttsriiis

Query= Contig-U13336-1 (Contig-U13336-1Q)
/CSM_Contig/Contig-U13336-1Q.Seq.d
         (630 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13336-1 (Contig-U13336-1Q) /CSM_Contig/Conti...   769  0.0
Contig-U14287-1 (Contig-U14287-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U11315-1 (Contig-U11315-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U10734-1 (Contig-U10734-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U02520-1 (Contig-U02520-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U14309-1 (Contig-U14309-1Q) /CSM_Contig/Conti...    32  0.69
Contig-U12043-1 (Contig-U12043-1Q) /CSM_Contig/Conti...    32  0.69
Contig-U11849-1 (Contig-U11849-1Q) /CSM_Contig/Conti...    32  0.69
Contig-U11749-1 (Contig-U11749-1Q) /CSM_Contig/Conti...    32  0.69

>Contig-U13336-1 (Contig-U13336-1Q) /CSM_Contig/Contig-U13336-1Q.Seq.d
          Length = 630

 Score =  769 bits (388), Expect = 0.0
 Identities = 388/388 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtagaatcaactgaagctccagctcaatcatcagctgccgaacaacaagcaccagcagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtagaatcaactgaagctccagctcaatcatcagctgccgaacaacaagcaccagcagaa 60

                                                                       
Query: 61  tcaactgaagccccagctcaatcatcagctgctgaacaacaagcaccagcagaatcaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcaactgaagccccagctcaatcatcagctgctgaacaacaagcaccagcagaatcaaat 120

                                                                       
Query: 121 gaagcaccagctcaatcatcagctgccgaacaatcagcagaatcaaatgaagcaccagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaagcaccagctcaatcatcagctgccgaacaatcagcagaatcaaatgaagcaccagct 180

                                                                       
Query: 181 caatcatcagctgctgaacaacaagcaccagcagaatcaaatgaagctccagctcaatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caatcatcagctgctgaacaacaagcaccagcagaatcaaatgaagctccagctcaatca 240

                                                                       
Query: 241 tcagctgccgaacaaccagcagaatcaaatgaagcaccagctcaatcatcctcaactgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcagctgccgaacaaccagcagaatcaaatgaagcaccagctcaatcatcctcaactgta 300

                                                                       
Query: 301 gaacaaccaccagctgaatcatcagctgcaccagaagcaacagaagttccagctgaatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaacaaccaccagctgaatcatcagctgcaccagaagcaacagaagttccagctgaatct 360

                                       
Query: 361 gctgaacaaccaactgaatcatcaaatg 388
           ||||||||||||||||||||||||||||
Sbjct: 361 gctgaacaaccaactgaatcatcaaatg 388


 Score =  220 bits (111), Expect = 1e-57
 Identities = 111/111 (100%)
 Strand = Plus / Plus

                                                                       
Query: 520 tcagaatcatcaaatccaacccaatcatcaggtgaacaacaaccaaccgaatcatcaaat 579
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tcagaatcatcaaatccaacccaatcatcaggtgaacaacaaccaaccgaatcatcaaat 579

                                                              
Query: 580 gctgaacaaccaactgattcacaacaaccaccagcagaatcatcatcagcc 630
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gctgaacaaccaactgattcacaacaaccaccagcagaatcatcatcagcc 630


 Score = 60.0 bits (30), Expect = 3e-09
 Identities = 50/56 (89%), Gaps = 3/56 (5%)
 Strand = Plus / Plus

                                                                   
Query: 557 aacaaccaaccgaatcatcaaatgctg---aacaaccaactgattcacaacaacca 609
           |||||||||| ||||||||||||||||   |||||| |||||| ||||||||||||
Sbjct: 365 aacaaccaactgaatcatcaaatgctgaacaacaacaaactgactcacaacaacca 420


 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 584 aacaaccaactgattcacaacaaccacca 612
           |||||||||||||||||||||||| ||||
Sbjct: 446 aacaaccaactgattcacaacaacaacca 474


 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 584 aacaaccaactgattcacaacaac 607
           ||||||||||||||||||||||||
Sbjct: 467 aacaaccaactgattcacaacaac 490


 Score = 40.1 bits (20), Expect = 0.003
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 535 ccaacccaatcatcaggtgaacaacaac 562
           ||||| ||||||||||||||| ||||||
Sbjct: 418 ccaactcaatcatcaggtgaagaacaac 445


 Score = 40.1 bits (20), Expect = 0.003
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 584 aacaaccaactgattcacaacaac 607
           ||||| ||||||||||||||||||
Sbjct: 488 aacaaacaactgattcacaacaac 511


 Score = 40.1 bits (20), Expect = 0.003
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 365 aacaaccaactgaatcatcaaatg 388
           |||||||||| |||||||||||||
Sbjct: 557 aacaaccaaccgaatcatcaaatg 580


 Score = 38.2 bits (19), Expect = 0.011
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 602 aacaaccaccagcagaatcatca 624
           ||||||||||||| |||||||||
Sbjct: 302 aacaaccaccagctgaatcatca 324


 Score = 38.2 bits (19), Expect = 0.011
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 302 aacaaccaccagctgaatcatca 324
           ||||||||||||| |||||||||
Sbjct: 602 aacaaccaccagcagaatcatca 624


 Score = 36.2 bits (18), Expect = 0.044
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 360 tgctgaacaaccaactga 377
           ||||||||||||||||||
Sbjct: 579 tgctgaacaaccaactga 596


 Score = 36.2 bits (18), Expect = 0.044
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 198 acaacaagcaccagcagaatca 219
           ||||||| ||||||||||||||
Sbjct: 600 acaacaaccaccagcagaatca 621


 Score = 36.2 bits (18), Expect = 0.044
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 42  acaacaagcaccagcagaatca 63
           ||||||| ||||||||||||||
Sbjct: 600 acaacaaccaccagcagaatca 621


 Score = 36.2 bits (18), Expect = 0.044
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 579 tgctgaacaaccaactga 596
           ||||||||||||||||||
Sbjct: 360 tgctgaacaaccaactga 377


 Score = 36.2 bits (18), Expect = 0.044
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 600 acaacaaccaccagcagaatca 621
           ||||||| ||||||||||||||
Sbjct: 42  acaacaagcaccagcagaatca 63


 Score = 36.2 bits (18), Expect = 0.044
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 600 acaacaaccaccagcagaatca 621
           ||||||| ||||||||||||||
Sbjct: 96  acaacaagcaccagcagaatca 117


 Score = 36.2 bits (18), Expect = 0.044
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 600 acaacaaccaccagcagaatca 621
           ||||||| ||||||||||||||
Sbjct: 198 acaacaagcaccagcagaatca 219


 Score = 36.2 bits (18), Expect = 0.044
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 96  acaacaagcaccagcagaatca 117
           ||||||| ||||||||||||||
Sbjct: 600 acaacaaccaccagcagaatca 621


 Score = 32.2 bits (16), Expect = 0.69
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 365 aacaaccaactgaatcatca 384
           ||||||||||| ||||||||
Sbjct: 413 aacaaccaactcaatcatca 432


 Score = 30.2 bits (15), Expect = 2.7
 Identities = 27/31 (87%)
 Strand = Plus / Plus

                                          
Query: 174 accagctcaatcatcagctgctgaacaacaa 204
           |||| |||||||||||| ||  |||||||||
Sbjct: 417 accaactcaatcatcaggtgaagaacaacaa 447


 Score = 30.2 bits (15), Expect = 2.7
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                  
Query: 182 aatcatcagctgctgaacaacaa 204
           ||||||||  |||||||||||||
Sbjct: 377 aatcatcaaatgctgaacaacaa 399


 Score = 30.2 bits (15), Expect = 2.7
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                  
Query: 80  aatcatcagctgctgaacaacaa 102
           ||||||||  |||||||||||||
Sbjct: 377 aatcatcaaatgctgaacaacaa 399


>Contig-U14287-1 (Contig-U14287-1Q) /CSM_Contig/Contig-U14287-1Q.Seq.d
          Length = 1268

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 352 gctgaatctgctgaaca 368
           |||||||||||||||||
Sbjct: 805 gctgaatctgctgaaca 821


>Contig-U11315-1 (Contig-U11315-1Q) /CSM_Contig/Contig-U11315-1Q.Seq.d
          Length = 1343

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 154 tcagcagaatcaaatgaagca 174
           ||||||||||||| |||||||
Sbjct: 731 tcagcagaatcaattgaagca 751


 Score = 32.2 bits (16), Expect = 0.69
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 107 cagcagaatcaaatgaagca 126
           |||||||||||| |||||||
Sbjct: 732 cagcagaatcaattgaagca 751


 Score = 32.2 bits (16), Expect = 0.69
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 257 cagcagaatcaaatgaagca 276
           |||||||||||| |||||||
Sbjct: 732 cagcagaatcaattgaagca 751


 Score = 30.2 bits (15), Expect = 2.7
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 209 cagcagaatcaaatgaagc 227
           |||||||||||| ||||||
Sbjct: 732 cagcagaatcaattgaagc 750


 Score = 30.2 bits (15), Expect = 2.7
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 53  cagcagaatcaactgaagc 71
           |||||||||||| ||||||
Sbjct: 732 cagcagaatcaattgaagc 750


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5779
Number of Sequences: 6905
Number of extensions: 5779
Number of successful extensions: 653
Number of sequences better than 10.0: 47
length of query: 630
length of database: 5,674,871
effective HSP length: 16
effective length of query: 614
effective length of database: 5,564,391
effective search space: 3416536074
effective search space used: 3416536074
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U13336-1 (Contig-U13336-1Q) /CSM_Contig/Contig-U13336-1Q.Seq.d
         (630 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061548) Dictyostelium discoideum slug cDNA, clone SLE608.      716   0.0    2
(CR388138) Zebrafish DNA sequence from clone DKEY-255D8 in l...    42   1e-08  7
(AY253534) Anagasta kuehniella fibroin heavy chain gene, par...    34   2e-06  5
(BX296549) Zebrafish DNA sequence from clone CH211-264K6 in ...    42   2e-05  5
(CO062034) est_k_brevis1610 Karenia brevis EST Library (L99-...    34   3e-04  3
(AF109218) Staphylococcus carnosus FabZ (fabZ) gene, partial...    40   3e-04  2
(EK227919) 1095460165221 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.002  3
(AC149892) Xenopus tropicalis clone ISB-242D2, WORKING DRAFT...    54   0.006  1
(AY253535) Anagasta kuehniella fibroin heavy chain mRNA, par...    32   0.043  3
(DY450727) PCAA-aaa26c03.g2 UCI-12 Podocoryne carnea cDNA 5'...    34   0.29   2
(FF089040) CPAD-aaa66h10.b1 PB2801_EST_CPAD1 Caenorhabditis ...    30   0.52   3
(FE468792) CAOS25847.fwd CAOS Selaginella moellendorffii mix...    32   1.1    2
(FF526982) G710P5333RD8.T0 Acorn worm normalized juvenile pE...    28   1.1    4
(CB283192) BT1463 Blomia tropicalis cDNA library Blomia trop...    30   1.5    3
(CN969229) 16726_123-007-36 Fundulus Heteroclitus Liver Fund...    46   1.5    1
(FF094918) CPAD-aab80a08.b1 PB2801_EST_CPAD1 Caenorhabditis ...    30   2.0    3
(FF103887) CPAD-aad37d11.b1 PB2801_EST_CPAD1 Caenorhabditis ...    30   2.3    3
(DQ102341) Streptococcus thermophilus strain A054 cell segre...    40   2.4    2
(DQ102340) Streptococcus thermophilus strain NST1 cell segre...    40   2.5    2
(FF098710) CPAD-aab81b06.b1 PB2801_EST_CPAD1 Caenorhabditis ...    30   2.8    3
(FF089670) CPAD-aaa99e10.b1 PB2801_EST_CPAD1 Caenorhabditis ...    30   2.8    3
(AC103017) Rattus norvegicus clone CH230-195J17, WORKING DRA...    32   2.9    2
(BZ168641) CH230-414K5.TV CHORI-230 Segment 2 Rattus norvegi...    32   3.9    2
(BZ227910) CH230-305A22.TJ CHORI-230 Segment 2 Rattus norveg...    32   3.9    2
(ER535729) 1093015836560 Global-Ocean-Sampling_GS-35-01-01-1...    28   4.2    3
(EK267011) 1095462231516 Global-Ocean-Sampling_GS-31-01-01-1...    30   4.8    3
(C90309) Dictyostelium discoideum slug cDNA, clone SSI786.         30   5.1    3
(CR450805) Zebrafish DNA sequence from clone CH211-284C15 in...    42   5.3    2
(AU269272) Dictyostelium discoideum vegetative cDNA clone:VS...    30   5.8    3
(AC226251) Zea mays chromosome 3 clone CH201-107O18; ZMMBBc0...    44   6.0    1
(AC202867) Zea mays chromosome 3 clone CH201-417C18; ZMMBBc0...    44   6.0    1
(EJ188166) 1092344168023 Global-Ocean-Sampling_GS-27-01-01-1...    44   6.0    1
(EJ017311) 1095439019414 Global-Ocean-Sampling_GS-26-01-01-1...    44   6.0    1
(CW852416) OG_BBa0083B23.f OG_BBa Oryza glaberrima genomic c...    44   6.0    1
(DB726324) Solanum lycopersicum cDNA, clone: LEFL2052A16, 5'...    44   6.0    1
(DB719205) Solanum lycopersicum cDNA, clone: LEFL2031D14, 5'...    44   6.0    1
(DB717824) Solanum lycopersicum cDNA, clone: LEFL2027C09, 5'...    44   6.0    1
(DB707529) Solanum lycopersicum cDNA, clone: LEFL1094DE06, 5...    44   6.0    1
(DB685967) Solanum lycopersicum cDNA, clone: LEFL1024DG09, 5...    44   6.0    1
(CN057642) Salamander_28_G12.ab1 AG Ambystoma tigrinum tigri...    44   6.0    1
(BW976607) Sus scrofa mRNA, clone:ITT010007C01, 5' end, expr...    44   6.0    1
(BP899938) Solanum lycopersicum cDNA, clone: LA21BD01, 5' en...    44   6.0    1
(BP880903) Solanum lycopersicum cDNA, clone: FA18DA04, 5' en...    44   6.0    1
(BF051562) EST436739 tomato developing/immature green fruit ...    44   6.0    1
(BF050443) EST435601 tomato developing/immature green fruit ...    44   6.0    1
(AW035367) EST280929 tomato callus, TAMU Solanum lycopersicu...    44   6.0    1
(AU261749) Dictyostelium discoideum vegetative cDNA clone:VS...    30   6.1    3
(C94004) Dictyostelium discoideum slug cDNA, clone SSK688.         30   6.5    3
(C93998) Dictyostelium discoideum slug cDNA, clone SSK680.         30   6.5    3
(C89624) Dictyostelium discoideum slug cDNA, clone SSA372.         30   6.5    3
(AU284421) Dictyostelium discoideum gamete cDNA clone:FC-AU0...    30   7.0    3
(AU262054) Dictyostelium discoideum vegetative cDNA clone:VS...    30   7.8    3
(CK242210) rx07b04.y1 Meloidogyne paranaensis egg SMART pGEM...    32   7.9    3
(CD647476) AUF_108_B05_T7 Crassostrea virginica Gonad Crasso...    30   8.7    3
(AY695844) Streptococcus thermophilus strain CNRZ368 cse gen...    40   9.3    2
(AM494950) Leishmania braziliensis chromosome 13.                  32   9.7    2

>(AU061548) Dictyostelium discoideum slug cDNA, clone SLE608.
          Length = 631

 Score =  716 bits (361), Expect(2) = 0.0
 Identities = 361/361 (100%)
 Strand = Plus / Plus


Query: 1   gtagaatcaactgaagctccagctcaatcatcagctgccgaacaacaagcaccagcagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtagaatcaactgaagctccagctcaatcatcagctgccgaacaacaagcaccagcagaa 60


Query: 61  tcaactgaagccccagctcaatcatcagctgctgaacaacaagcaccagcagaatcaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcaactgaagccccagctcaatcatcagctgctgaacaacaagcaccagcagaatcaaat 120


Query: 121 gaagcaccagctcaatcatcagctgccgaacaatcagcagaatcaaatgaagcaccagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaagcaccagctcaatcatcagctgccgaacaatcagcagaatcaaatgaagcaccagct 180


Query: 181 caatcatcagctgctgaacaacaagcaccagcagaatcaaatgaagctccagctcaatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caatcatcagctgctgaacaacaagcaccagcagaatcaaatgaagctccagctcaatca 240


Query: 241 tcagctgccgaacaaccagcagaatcaaatgaagcaccagctcaatcatcctcaactgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcagctgccgaacaaccagcagaatcaaatgaagcaccagctcaatcatcctcaactgta 300


Query: 301 gaacaaccaccagctgaatcatcagctgcaccagaagcaacagaagttccagctgaatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaacaaccaccagctgaatcatcagctgcaccagaagcaacagaagttccagctgaatct 360


Query: 361 g 361
           |
Sbjct: 361 g 361

 Score =  127 bits (64), Expect(2) = 0.0
 Identities = 64/64 (100%)
 Strand = Plus / Plus


Query: 567 cgaatcatcaaatgctgaacaaccaactgattcacaacaaccaccagcagaatcatcatc 626
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cgaatcatcaaatgctgaacaaccaactgattcacaacaaccaccagcagaatcatcatc 626


Query: 627 agcc 630
           ||||
Sbjct: 627 agcc 630

 Score =  153 bits (77), Expect(7) = 3e-98
 Identities = 92/97 (94%)
 Strand = Plus / Plus


Query: 3   agaatcaactgaagctccagctcaatcatcagctgccgaacaacaagcaccagcagaatc 62
           ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 57  agaatcaactgaagccccagctcaatcatcagctgctgaacaacaagcaccagcagaatc 116


Query: 63  aactgaagccccagctcaatcatcagctgctgaacaa 99
           || |||||| |||||||||||||||||||| ||||||
Sbjct: 117 aaatgaagcaccagctcaatcatcagctgccgaacaa 153

 Score = 85.7 bits (43), Expect(7) = 3e-98
 Identities = 46/47 (97%)
 Strand = Plus / Plus


Query: 107 cagcagaatcaaatgaagcaccagctcaatcatcagctgccgaacaa 153
           |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 155 cagcagaatcaaatgaagcaccagctcaatcatcagctgctgaacaa 201

 Score = 81.8 bits (41), Expect(7) = 3e-98
 Identities = 50/53 (94%)
 Strand = Plus / Plus


Query: 155 cagcagaatcaaatgaagcaccagctcaatcatcagctgctgaacaacaagca 207
           ||||||||||||||||||| |||||||||||||||||||| ||||||| ||||
Sbjct: 209 cagcagaatcaaatgaagctccagctcaatcatcagctgccgaacaaccagca 261

 Score = 63.9 bits (32), Expect(7) = 3e-98
 Identities = 35/36 (97%)
 Strand = Plus / Plus


Query: 207 accagcagaatcaaatgaagctccagctcaatcatc 242
           ||||||||||||||||||||| ||||||||||||||
Sbjct: 255 accagcagaatcaaatgaagcaccagctcaatcatc 290

 Score = 48.1 bits (24), Expect(7) = 3e-98
 Identities = 24/24 (100%)
 Strand = Plus / Plus


Query: 584 aacaaccaactgattcacaacaac 607
           ||||||||||||||||||||||||
Sbjct: 467 aacaaccaactgattcacaacaac 490

 Score = 44.1 bits (22), Expect(7) = 3e-98
 Identities = 22/22 (100%)
 Strand = Plus / Plus


Query: 568 gaatcatcaaatgctgaacaac 589
           ||||||||||||||||||||||
Sbjct: 376 gaatcatcaaatgctgaacaac 397

 Score = 26.3 bits (13), Expect(7) = 3e-98
 Identities = 22/25 (88%)
 Strand = Plus / Plus


Query: 600 acaacaaccaccagcagaatcatca 624
           |||||||| | || |||||||||||
Sbjct: 507 acaacaacaaacatcagaatcatca 531

 Score =  153 bits (77), Expect(5) = 1e-89
 Identities = 92/97 (94%)
 Strand = Plus / Plus


Query: 57  agaatcaactgaagccccagctcaatcatcagctgctgaacaacaagcaccagcagaatc 116
           ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3   agaatcaactgaagctccagctcaatcatcagctgccgaacaacaagcaccagcagaatc 62


Query: 117 aaatgaagcaccagctcaatcatcagctgccgaacaa 153
           || |||||| |||||||||||||||||||| ||||||
Sbjct: 63  aactgaagccccagctcaatcatcagctgctgaacaa 99

 Score = 85.7 bits (43), Expect(5) = 1e-89
 Identities = 46/47 (97%)
 Strand = Plus / Plus


Query: 155 cagcagaatcaaatgaagcaccagctcaatcatcagctgctgaacaa 201
           |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 107 cagcagaatcaaatgaagcaccagctcaatcatcagctgccgaacaa 153

 Score = 81.8 bits (41), Expect(5) = 1e-89
 Identities = 50/53 (94%)
 Strand = Plus / Plus


Query: 209 cagcagaatcaaatgaagctccagctcaatcatcagctgccgaacaaccagca 261
           ||||||||||||||||||| |||||||||||||||||||| ||||||| ||||
Sbjct: 155 cagcagaatcaaatgaagcaccagctcaatcatcagctgctgaacaacaagca 207

 Score = 63.9 bits (32), Expect(5) = 1e-89
 Identities = 35/36 (97%)
 Strand = Plus / Plus


Query: 255 accagcagaatcaaatgaagcaccagctcaatcatc 290
           ||||||||||||||||||||| ||||||||||||||
Sbjct: 207 accagcagaatcaaatgaagctccagctcaatcatc 242

 Score = 50.1 bits (25), Expect(5) = 1e-89
 Identities = 28/29 (96%)
 Strand = Plus / Plus


Query: 584 aacaaccaactgattcacaacaaccacca 612
           |||||||||||||||||||||||| ||||
Sbjct: 446 aacaaccaactgattcacaacaacaacca 474

 Score =  238 bits (120), Expect(4) = 7e-80
 Identities = 132/136 (97%)
 Strand = Plus / Plus


Query: 53  cagcagaatcaactgaagccccagctcaatcatcagctgctgaacaacaagcaccagcag 112
           |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 cagcagaatcaaatgaagcaccagctcaatcatcagctgctgaacaacaagcaccagcag 214


Query: 113 aatcaaatgaagcaccagctcaatcatcagctgccgaacaatcagcagaatcaaatgaag 172
           ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 215 aatcaaatgaagctccagctcaatcatcagctgccgaacaaccagcagaatcaaatgaag 274


Query: 173 caccagctcaatcatc 188
           ||||||||||||||||
Sbjct: 275 caccagctcaatcatc 290

 Score = 69.9 bits (35), Expect(4) = 7e-80
 Identities = 41/43 (95%)
 Strand = Plus / Plus


Query: 3   agaatcaactgaagctccagctcaatcatcagctgccgaacaa 45
           |||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 111 agaatcaaatgaagcaccagctcaatcatcagctgccgaacaa 153

 Score = 40.1 bits (20), Expect(4) = 7e-80
 Identities = 23/24 (95%)
 Strand = Plus / Plus


Query: 584 aacaaccaactgattcacaacaac 607
           ||||| ||||||||||||||||||
Sbjct: 488 aacaaacaactgattcacaacaac 511

 Score = 32.2 bits (16), Expect(4) = 7e-80
 Identities = 19/20 (95%)
 Strand = Plus / Plus


Query: 229 ccagctcaatcatcagctgc 248
           |||||| |||||||||||||
Sbjct: 310 ccagctgaatcatcagctgc 329

 Score =  238 bits (120), Expect(4) = 3e-79
 Identities = 132/136 (97%)
 Strand = Plus / Plus


Query: 155 cagcagaatcaaatgaagcaccagctcaatcatcagctgctgaacaacaagcaccagcag 214
           |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  cagcagaatcaactgaagccccagctcaatcatcagctgctgaacaacaagcaccagcag 112


Query: 215 aatcaaatgaagctccagctcaatcatcagctgccgaacaaccagcagaatcaaatgaag 274
           ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 113 aatcaaatgaagcaccagctcaatcatcagctgccgaacaatcagcagaatcaaatgaag 172


Query: 275 caccagctcaatcatc 290
           ||||||||||||||||
Sbjct: 173 caccagctcaatcatc 188

 Score = 69.9 bits (35), Expect(4) = 3e-79
 Identities = 41/43 (95%)
 Strand = Plus / Plus


Query: 111 agaatcaaatgaagcaccagctcaatcatcagctgccgaacaa 153
           |||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 3   agaatcaactgaagctccagctcaatcatcagctgccgaacaa 45

 Score = 38.2 bits (19), Expect(4) = 3e-79
 Identities = 22/23 (95%)
 Strand = Plus / Plus


Query: 602 aacaaccaccagcagaatcatca 624
           ||||||||||||| |||||||||
Sbjct: 302 aacaaccaccagctgaatcatca 324

 Score = 32.2 bits (16), Expect(4) = 3e-79
 Identities = 19/20 (95%)
 Strand = Plus / Plus


Query: 310 ccagctgaatcatcagctgc 329
           |||||| |||||||||||||
Sbjct: 229 ccagctcaatcatcagctgc 248

 Score =  149 bits (75), Expect(4) = 1e-54
 Identities = 96/103 (93%)
 Strand = Plus / Plus


Query: 3   agaatcaactgaagctccagctcaatcatcagctgccgaacaacaagcaccagcagaatc 62
           |||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 159 agaatcaaatgaagcaccagctcaatcatcagctgctgaacaacaagcaccagcagaatc 218


Query: 63  aactgaagccccagctcaatcatcagctgctgaacaacaagca 105
           || |||||| |||||||||||||||||||| ||||||| ||||
Sbjct: 219 aaatgaagctccagctcaatcatcagctgccgaacaaccagca 261

 Score = 71.9 bits (36), Expect(4) = 1e-54
 Identities = 36/36 (100%)
 Strand = Plus / Plus


Query: 105 accagcagaatcaaatgaagcaccagctcaatcatc 140
           ||||||||||||||||||||||||||||||||||||
Sbjct: 255 accagcagaatcaaatgaagcaccagctcaatcatc 290

 Score = 38.2 bits (19), Expect(4) = 1e-54
 Identities = 22/23 (95%)
 Strand = Plus / Plus


Query: 302 aacaaccaccagctgaatcatca 324
           ||||||||||||| |||||||||
Sbjct: 602 aacaaccaccagcagaatcatca 624

 Score = 36.2 bits (18), Expect(4) = 1e-54
 Identities = 21/22 (95%)
 Strand = Plus / Plus


Query: 173 caccagctcaatcatcagctgc 194
           |||||||| |||||||||||||
Sbjct: 308 caccagctgaatcatcagctgc 329

 Score =  149 bits (75), Expect(4) = 5e-54
 Identities = 96/103 (93%)
 Strand = Plus / Plus


Query: 159 agaatcaaatgaagcaccagctcaatcatcagctgctgaacaacaagcaccagcagaatc 218
           |||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3   agaatcaactgaagctccagctcaatcatcagctgccgaacaacaagcaccagcagaatc 62


Query: 219 aaatgaagctccagctcaatcatcagctgccgaacaaccagca 261
           || |||||| |||||||||||||||||||| ||||||| ||||
Sbjct: 63  aactgaagccccagctcaatcatcagctgctgaacaacaagca 105

 Score = 71.9 bits (36), Expect(4) = 5e-54
 Identities = 36/36 (100%)
 Strand = Plus / Plus


Query: 255 accagcagaatcaaatgaagcaccagctcaatcatc 290
           ||||||||||||||||||||||||||||||||||||
Sbjct: 105 accagcagaatcaaatgaagcaccagctcaatcatc 140

 Score = 36.2 bits (18), Expect(4) = 5e-54
 Identities = 21/22 (95%)
 Strand = Plus / Plus


Query: 308 caccagctgaatcatcagctgc 329
           |||||||| |||||||||||||
Sbjct: 173 caccagctcaatcatcagctgc 194

 Score = 36.2 bits (18), Expect(4) = 5e-54
 Identities = 18/18 (100%)
 Strand = Plus / Plus


Query: 579 tgctgaacaaccaactga 596
           ||||||||||||||||||
Sbjct: 360 tgctgaacaaccaactga 377

 Score = 81.8 bits (41), Expect(6) = 6e-32
 Identities = 47/49 (95%)
 Strand = Plus / Plus


Query: 3   agaatcaactgaagctccagctcaatcatcagctgccgaacaacaagca 51
           |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 213 agaatcaaatgaagctccagctcaatcatcagctgccgaacaaccagca 261

 Score = 56.0 bits (28), Expect(6) = 6e-32
 Identities = 34/36 (94%)
 Strand = Plus / Plus


Query: 51  accagcagaatcaactgaagccccagctcaatcatc 86
           |||||||||||||| |||||| ||||||||||||||
Sbjct: 255 accagcagaatcaaatgaagcaccagctcaatcatc 290

 Score = 36.2 bits (18), Expect(6) = 6e-32
 Identities = 21/22 (95%)
 Strand = Plus / Plus


Query: 198 acaacaagcaccagcagaatca 219
           ||||||| ||||||||||||||
Sbjct: 600 acaacaaccaccagcagaatca 621

 Score = 30.2 bits (15), Expect(6) = 6e-32
 Identities = 21/23 (91%)
 Strand = Plus / Plus


Query: 80  aatcatcagctgctgaacaacaa 102
           ||||||||  |||||||||||||
Sbjct: 377 aatcatcaaatgctgaacaacaa 399

 Score = 26.3 bits (13), Expect(6) = 6e-32
 Identities = 16/17 (94%)
 Strand = Plus / Plus


Query: 126 accagctcaatcatcag 142
           |||| ||||||||||||
Sbjct: 417 accaactcaatcatcag 433

 Score = 26.3 bits (13), Expect(6) = 6e-32
 Identities = 19/21 (90%)
 Strand = Plus / Plus


Query: 182 aatcatcagctgctgaacaac 202
           ||||||||  |||||||||||
Sbjct: 569 aatcatcaaatgctgaacaac 589

 Score = 81.8 bits (41), Expect(5) = 2e-31
 Identities = 47/49 (95%)
 Strand = Plus / Plus


Query: 213 agaatcaaatgaagctccagctcaatcatcagctgccgaacaaccagca 261
           |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3   agaatcaactgaagctccagctcaatcatcagctgccgaacaacaagca 51

 Score = 56.0 bits (28), Expect(5) = 2e-31
 Identities = 34/36 (94%)
 Strand = Plus / Plus


Query: 255 accagcagaatcaaatgaagcaccagctcaatcatc 290
           |||||||||||||| |||||| ||||||||||||||
Sbjct: 51  accagcagaatcaactgaagccccagctcaatcatc 86

 Score = 36.2 bits (18), Expect(5) = 2e-31
 Identities = 21/22 (95%)
 Strand = Plus / Plus


Query: 308 caccagctgaatcatcagctgc 329
           |||||||| |||||||||||||
Sbjct: 125 caccagctcaatcatcagctgc 146

 Score = 36.2 bits (18), Expect(5) = 2e-31
 Identities = 24/26 (92%)
 Strand = Plus / Plus


Query: 584 aacaaccaactgattcacaacaacca 609
           |||||| |||||| ||||||||||||
Sbjct: 395 aacaacaaactgactcacaacaacca 420

 Score = 26.3 bits (13), Expect(5) = 2e-31
 Identities = 19/21 (90%)
 Strand = Plus / Plus


Query: 569 aatcatcaaatgctgaacaac 589
           ||||||||  |||||||||||
Sbjct: 182 aatcatcagctgctgaacaac 202

 Score = 44.1 bits (22), Expect(4) = 2e-08
 Identities = 28/30 (93%)
 Strand = Plus / Plus


Query: 3   agaatcaactgaagctccagctcaatcatc 32
           |||||||| |||||| ||||||||||||||
Sbjct: 261 agaatcaaatgaagcaccagctcaatcatc 290

 Score = 36.2 bits (18), Expect(4) = 2e-08
 Identities = 21/22 (95%)
 Strand = Plus / Plus


Query: 125 caccagctcaatcatcagctgc 146
           |||||||| |||||||||||||
Sbjct: 308 caccagctgaatcatcagctgc 329

 Score = 30.2 bits (15), Expect(4) = 2e-08
 Identities = 27/31 (87%)
 Strand = Plus / Plus


Query: 174 accagctcaatcatcagctgctgaacaacaa 204
           |||| |||||||||||| ||  |||||||||
Sbjct: 417 accaactcaatcatcaggtgaagaacaacaa 447

 Score = 26.3 bits (13), Expect(4) = 2e-08
 Identities = 13/13 (100%)
 Strand = Plus / Plus


Query: 255 accagcagaatca 267
           |||||||||||||
Sbjct: 609 accagcagaatca 621

 Score = 44.1 bits (22), Expect(3) = 4e-07
 Identities = 28/30 (93%)
 Strand = Plus / Plus


Query: 261 agaatcaaatgaagcaccagctcaatcatc 290
           |||||||| |||||| ||||||||||||||
Sbjct: 3   agaatcaactgaagctccagctcaatcatc 32

 Score = 36.2 bits (18), Expect(3) = 4e-07
 Identities = 21/22 (95%)
 Strand = Plus / Plus


Query: 600 acaacaaccaccagcagaatca 621
           ||||||| ||||||||||||||
Sbjct: 96  acaacaagcaccagcagaatca 117

 Score = 32.2 bits (16), Expect(3) = 4e-07
 Identities = 19/20 (95%)
 Strand = Plus / Plus


Query: 310 ccagctgaatcatcagctgc 329
           |||||| |||||||||||||
Sbjct: 73  ccagctcaatcatcagctgc 92

 Score = 36.2 bits (18), Expect(3) = 0.013
 Identities = 21/22 (95%)
 Strand = Plus / Plus


Query: 96  acaacaagcaccagcagaatca 117
           ||||||| ||||||||||||||
Sbjct: 600 acaacaaccaccagcagaatca 621

 Score = 32.2 bits (16), Expect(3) = 0.013
 Identities = 19/20 (95%)
 Strand = Plus / Plus


Query: 19  ccagctcaatcatcagctgc 38
           |||||| |||||||||||||
Sbjct: 310 ccagctgaatcatcagctgc 329

 Score = 28.2 bits (14), Expect(3) = 0.013
 Identities = 23/26 (88%)
 Strand = Plus / Plus


Query: 77  ctcaatcatcagctgctgaacaacaa 102
           |||||||||||| ||  |||||||||
Sbjct: 422 ctcaatcatcaggtgaagaacaacaa 447

 Score = 36.2 bits (18), Expect(3) = 0.046
 Identities = 21/22 (95%)
 Strand = Plus / Plus


Query: 600 acaacaaccaccagcagaatca 621
           ||||||| ||||||||||||||
Sbjct: 198 acaacaagcaccagcagaatca 219

 Score = 32.2 bits (16), Expect(3) = 0.046
 Identities = 19/20 (95%)
 Strand = Plus / Plus


Query: 310 ccagctgaatcatcagctgc 329
           |||||| |||||||||||||
Sbjct: 19  ccagctcaatcatcagctgc 38

 Score = 26.3 bits (13), Expect(3) = 0.046
 Identities = 19/21 (90%)
 Strand = Plus / Plus


Query: 569 aatcatcaaatgctgaacaac 589
           ||||||||  |||||||||||
Sbjct: 80  aatcatcagctgctgaacaac 100

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 483,134,597
Number of extensions: 26865006
Number of successful extensions: 2024694
Number of sequences better than 10.0: 56
Length of query: 630
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 607
Effective length of database: 93,106,754,628
Effective search space: 56515800059196
Effective search space used: 56515800059196
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U13336-1 (Contig-U13336-1Q) /CSM_Contig/Contig-U13336-1Q.Seq.d
         (630 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE016830_1063(AE016830|pid:none) Enterococcus faecalis V583, com...    35   1.8
AJ302065_2(AJ302065|pid:none) Enterococcus faecalis prfA gene fo...    35   1.8

>AE016830_1063(AE016830|pid:none) Enterococcus faecalis V583,
           complete genome.
          Length = 778

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = +1

Query: 556 QQPTESSNAEQPTDSQQPPAESSSA 630
           +QP  SS+AEQP  S+QPP  SSS+
Sbjct: 734 EQPASSSSAEQPATSEQPPEPSSSS 758

Lambda     K      H
   0.278   0.0979    0.239

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 203,481,347
Number of extensions: 1966000
Number of successful extensions: 6484
Number of sequences better than 10.0: 2
Number of HSP's gapped: 6472
Number of HSP's successfully gapped: 2
Length of query: 210
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 87
Effective length of database: 653,084,107
Effective search space: 56818317309
Effective search space used: 56818317309
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 6.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (19.8 bits)
S2: 31 (16.5 bits)

 psg: 0.75  gvh: 0.34  alm: 0.65  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	 16.0 %: mitochondrial

>> prediction for Contig-U13336-1 is nuc