Contig-U13331-1 |
Contig ID |
Contig-U13331-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
775 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
4190142 |
End point |
4189421 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
9 |
Number of EST |
9 |
Link to clone list |
U13331 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12. 7 |
Homology vs DNA |
Query= Contig-U13331-1 (Contig-U13331-1Q) /CSM_Contig/Contig-U13331-1Q.Seq.d (775 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(C24642) Dictyostelium discoideum slug cDNA, clone SL-X042. 486 0.0 3 (C89630) Dictyostelium discoideum slug cDNA, clone SSA392. 456 0.0 3 (AU038893) Dictyostelium discoideum slug cDNA, clone SSM110. 456 0.0 3 (C93939) Dictyostelium discoideum slug cDNA, clone SSL885. 432 0.0 4 (C89942) Dictyostelium discoideum slug cDNA, clone SSG648. 456 0.0 3 (C90174) Dictyostelium discoideum slug cDNA, clone SSI181. 456 0.0 3 (AU038052) Dictyostelium discoideum slug cDNA, clone SSH207. 456 e-153 3 (AU074801) Dictyostelium discoideum slug cDNA, clone SSM110. 400 e-116 2 (AU061348) Dictyostelium discoideum slug cDNA, clone SLD807. 329 9e-86 1 (AU038407) Dictyostelium discoideum slug cDNA, clone SSH673. 176 8e-40 1 (AU052706) Dictyostelium discoideum slug cDNA, clone SLD807. 157 7e-34 1 (AU073749) Dictyostelium discoideum slug cDNA, clone SSI267. 94 1e-18 2 (CP000685) Flavobacterium johnsoniae UW101, complete genome. 82 4e-11 1 (BH388415) AG-ND-144N13.TF ND-TAM Anopheles gambiae genomic ... 42 5e-04 2 (AC205928) Pongo abelii BAC clone CH276-262B5 from chromosom... 50 0.13 1 (DH417725) Oryzias latipes Fosmid clone:GOLWFno828_c14, reve... 48 0.49 1 (AC181571) Strongylocentrotus purpuratus clone R3-1109H4, WO... 40 0.69 2 (CU655894) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.0 1 (CU582777) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.0 1 (AC214102) Pongo abelii chromosome 1 clone CH276-16C1, WORKI... 46 2.0 1 (AC203527) Dasypus novemcinctus clone VMRC5-283G11, WORKING ... 46 2.0 1 (DU184985) 1098553704875 CHORI-243 Ovis aries genomic clone ... 46 2.0 1 (CZ933002) 250159 Tomato EcoRI BAC Library Solanum lycopersi... 46 2.0 1 (DN783588) 92317449 Sea Urchin primary mesenchyme cell cDNA ... 46 2.0 1 (BW686350) Solanum lycopersicum cDNA, clone: FC05DD02, 5' en... 46 2.0 1 (CP000033) Lactobacillus acidophilus NCFM, complete genome. 46 2.0 1 (AM286415) Yersinia enterocolitica subsp. enterocolitica 808... 46 2.0 1 (EL365018) CCEM9537.b1_B10.ab1 CCE(LMS) endive Cichorium end... 38 4.4 2 (EJ864892) 1093018268807 Global-Ocean-Sampling_GS-30-02-01-1... 36 5.0 2 (AY192161) Homo sapiens plasminogen (PLG) gene, complete cds. 34 5.2 3 (AY644518) Bos taurus T cell receptor gamma cluster 2 (TCRG2... 38 5.4 4 (CC281358) CH261-167E17_RM1.1 CH261 Gallus gallus genomic cl... 38 5.6 2 (EA333158) Sequence 5650 from patent US 7306913. 34 6.6 3 (AF114449) Tapinella panuoides ATP synthase subunit 6 (atp6)... 44 7.7 1 (CQ436567) Sequence 2327 from Patent WO0192523. 44 7.7 1 (AX145255) Sequence 3977 from Patent WO0134809. 44 7.7 1 (AX144817) Sequence 3539 from Patent WO0134809. 44 7.7 1 (AR921732) Sequence 2369 from patent US 7090973. 44 7.7 1 (AR485891) Sequence 3977 from patent US 6703492. 44 7.7 1 (AR485453) Sequence 3539 from patent US 6703492. 44 7.7 1 (AP006543) Homo sapiens genomic DNA, chromosome 8p12, clone:... 44 7.7 1 (AC145110) Homo sapiens chromosome 8, clone WI2-80720H9, com... 44 7.7 1 (AC024563) Homo sapiens chromosome 19 clone CTC-451A6, compl... 44 7.7 1 (AC008626) Homo sapiens chromosome 19 clone CTB-159G17, comp... 44 7.7 1 (AC145111) Homo sapiens chromosome 8 clone XXfos-801968A2 ma... 44 7.7 1 (AC103493) Rattus norvegicus clone CH230-31C2, WORKING DRAFT... 44 7.7 1 (AC231608) Homo sapiens chromosome 8 clone ABC8-5694649G24, ... 44 7.7 1 (AC010318) Homo sapiens chromosome 19 clone CTB-93M21, WORKI... 44 7.7 1 (BH178860) 012_L_08-rev SmBAC1 Schistosoma mansoni genomic c... 44 7.7 1 (ER363926) 1093018939267 Global-Ocean-Sampling_GS-34-01-01-1... 44 7.7 1 (EK390400) 1095469500173 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.7 1 (EK062491) 1092960097275 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.7 1 (AL615816) T3 end of clone 012DF04 of library SmBAC1 from st... 44 7.7 1 (EJ546252) 1092956091697 Global-Ocean-Sampling_GS-29-01-01-1... 44 7.7 1 (EJ056714) 1095456032575 Global-Ocean-Sampling_GS-26-01-01-1... 44 7.7 1 (EI732049) CHORI51415M14TR BAC library from the primary brea... 44 7.7 1 (DU997832) OG_ABa0129B10.r OG_ABa Oryza granulata genomic cl... 44 7.7 1 (DU894240) 396868 Tomato HindIII BAC Library Solanum lycoper... 44 7.7 1 (DH622939) Rattus norvegicus DNA, BAC clone: RNB1-156G05, 3'... 44 7.7 1 (CC149914) NDL.40P4.SP6 Notre Dame Liverpool Aedes aegypti g... 44 7.7 1 (CC127890) NDL.31O6.T7 Notre Dame Liverpool Aedes aegypti ge... 44 7.7 1 (CC126588) NDL.92P8.T7 Notre Dame Liverpool Aedes aegypti ge... 44 7.7 1 (CC113973) NDL.7I23.T7 Notre Dame Liverpool Aedes aegypti ge... 44 7.7 1 (CC101589) CSU-K34.114C2.T7 CSU-K34 Aedes aegypti genomic cl... 44 7.7 1 (BZ029698) oef79b11.b1 B.oleracea002 Brassica oleracea genom... 44 7.7 1 (BX245325) Danio rerio genomic clone DKEY-234B3, genomic sur... 44 7.7 1 (EY804842) CR05-C3-702-053-H01-CT.F Mandarin fruit, developm... 44 7.7 1 (AP006841) Bacteroides fragilis YCH46 DNA, complete genome. 44 7.7 1 (AF269937) Staphylococcus epidermidis strain SR1 clone step.... 44 7.7 1 (AF269497) Staphylococcus epidermidis strain SR1 clone step.... 44 7.7 1 (BC077799) Xenopus laevis MGC80409 protein, mRNA (cDNA clone... 42 9.9 2
>(C24642) Dictyostelium discoideum slug cDNA, clone SL-X042. Length = 581
Score = 486 bits (245), Expect(3) = 0.0 Identities = 245/245 (100%) Strand = Plus / Plus
Query: 39 taatggaaattttaattggagcaacaattttaggtggtgttacttatgcctataattcat 98 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37 taatggaaattttaattggagcaacaattttaggtggtgttacttatgcctataattcat 96
Query: 99 tcaaaagatatattccagaaggagttcatgccgttaaaccattttatccagaaaagtatg 158 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97 tcaaaagatatattccagaaggagttcatgccgttaaaccattttatccagaaaagtatg 156
Query: 159 tgggtaaatggtatgaaattgcacgtttatacacatattttgaaaaggatttggataaaa 218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 157 tgggtaaatggtatgaaattgcacgtttatacacatattttgaaaaggatttggataaaa 216
Query: 219 ttacagcagaatattcaattaataaagatggttcaataacagtggttaatagtggataca 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 217 ttacagcagaatattcaattaataaagatggttcaataacagtggttaatagtggataca 276
Query: 279 attat 283 ||||| Sbjct: 277 attat 281
Score = 456 bits (230), Expect(3) = 0.0 Identities = 230/230 (100%) Strand = Plus / Plus
Query: 311 ggtattgcttattttgtaaatggctcggacgaaggaatgctaaaagtctctttctttggt 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 309 ggtattgcttattttgtaaatggctcggacgaaggaatgctaaaagtctctttctttggt 368
Query: 371 ccattttattctggctacaatgtaattgcaattgatcctgactataaatatgctttaatt 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 369 ccattttattctggctacaatgtaattgcaattgatcctgactataaatatgctttaatt 428
Query: 431 gctggtcaaagttttgattacatgtggatcctttcaaaagaaccaacaattccagagaaa 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 429 gctggtcaaagttttgattacatgtggatcctttcaaaagaaccaacaattccagagaaa 488
Query: 491 attaaaaattcttatttagaattagcaaaatcagttggttatgatattac 540 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 489 attaaaaattcttatttagaattagcaaaatcagttggttatgatattac 538
Score = 48.1 bits (24), Expect(3) = 0.0 Identities = 24/24 (100%) Strand = Plus / Plus
Query: 3 aaaattcatcaataaataacaaat 26 |||||||||||||||||||||||| Sbjct: 1 aaaattcatcaataaataacaaat 24
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 694,522,930 Number of extensions: 42860046 Number of successful extensions: 3527310 Number of sequences better than 10.0: 72 Length of query: 775 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 751 Effective length of database: 97,308,875,965 Effective search space: 73078965849715 Effective search space used: 73078965849715 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 6 |
Homology vs Protein |
Query= Contig-U13331-1 (Contig-U13331-1Q) /CSM_Contig/Contig-U13331-1Q.Seq.d (775 letters)
Database: nrp_B 3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
CP000685_2124(CP000685|pid:none) Flavobacterium johnsoniae UW101... 192 1e-47 CP000964_4805(CP000964|pid:none) Klebsiella pneumoniae 342, comp... 169 1e-40 AP006725_609(AP006725|pid:none) Klebsiella pneumoniae NTUH-K2044... 169 1e-40 CP000937_646(CP000937|pid:none) Francisella philomiragia subsp. ... 165 1e-39 CP000653_65(CP000653|pid:none) Enterobacter sp. 638, complete ge... 165 1e-39 AE014613_4097(AE014613|pid:none) Salmonella enterica subsp. ente... 164 2e-39 AE006468_4199(AE006468|pid:none) Salmonella enterica subsp. ente... 164 3e-39 CP000880_3173(CP000880|pid:none) Salmonella enterica subsp. ariz... 163 7e-39 AM933172_4078(AM933172|pid:none) Salmonella enterica subsp. ente... 163 7e-39 AB365867_2(AB365867|pid:none) Salmonella enterica subsp. enteric... 162 1e-38 (Q46036) RecName: Full=Outer membrane lipoprotein blc; Flags: Pr... 161 2e-38 CP000857_4346(CP000857|pid:none) Salmonella enterica subsp. ente... 160 3e-38 AM933173_4038(AM933173|pid:none) Salmonella enterica subsp. ente... 160 3e-38 DQ995355_3(DQ995355|pid:none) Escherichia coli plasmid pMG828-5,... 160 3e-38 FP236842_483(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/96... 160 3e-38 CP000653_336(CP000653|pid:none) Enterobacter sp. 638, complete g... 160 6e-38 CP000034_4045(CP000034|pid:none) Shigella dysenteriae Sd197, com... 159 7e-38 CP000247_4349(CP000247|pid:none) Escherichia coli 536, complete ... 159 9e-38 AE014075_5128(AE014075|pid:none) Escherichia coli CFT073, comple... 159 1e-37 AY339625_5(AY339625|pid:none) Escherichia coli plasmid p541, ins... 159 1e-37 CU468135_2978(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 158 2e-37 (P0A901) RecName: Full=Outer membrane lipoprotein blc; Flags: Pr... 157 3e-37 AE005674_4309(AE005674|pid:none) Shigella flexneri 2a str. 301, ... 157 3e-37 AM286415_345(AM286415|pid:none) Yersinia enterocolitica subsp. e... 156 6e-37 DQ017661_13(DQ017661|pid:none) Salmonella enterica plasmid pNF13... 155 1e-36 CP000915_1326(CP000915|pid:none) Francisella tularensis subsp. m... 155 2e-36 CP000891_1528(CP000891|pid:none) Shewanella baltica OS195, compl... 155 2e-36 CP000446_2574(CP000446|pid:none) Shewanella sp. MR-4, complete g... 154 2e-36 CP000681_1400(CP000681|pid:none) Shewanella putrefaciens CN-32, ... 154 4e-36 CP000563_1488(CP000563|pid:none) Shewanella baltica OS155, compl... 153 7e-36 AF025662_6(AF025662|pid:none) Vibrio cholerae lipoprotein (vlpA)... 153 7e-36 CP000783_156(CP000783|pid:none) Enterobacter sakazakii ATCC BAA-... 152 1e-35 AE003853_344(AE003853|pid:none) Vibrio cholerae O1 biovar eltor ... 152 1e-35 CR954247_44(CR954247|pid:none) Pseudoalteromonas haloplanktis st... 152 1e-35 (Q08790) RecName: Full=Outer membrane lipoprotein blc; AltName: ... 152 2e-35 AE003853_311(AE003853|pid:none) Vibrio cholerae O1 biovar eltor ... 152 2e-35 CP000626_863(CP000626|pid:none) Vibrio cholerae O395 chromosome ... 151 2e-35 CP000753_1478(CP000753|pid:none) Shewanella baltica OS185, compl... 151 3e-35 AE003853_435(AE003853|pid:none) Vibrio cholerae O1 biovar eltor ... 150 4e-35 BA000038_318(BA000038|pid:none) Vibrio vulnificus YJ016 DNA, chr... 149 1e-34 CP000647_4479(CP000647|pid:none) Klebsiella pneumoniae subsp. pn... 149 1e-34 CP001103_679(CP001103|pid:none) Alteromonas macleodii 'Deep ecot... 146 6e-34 FM954972_2002(FM954972|pid:none) Vibrio splendidus LGP32 chromos... 145 1e-33 CP000252_2075(CP000252|pid:none) Syntrophus aciditrophicus SB, c... 145 2e-33 CP000644_207(CP000644|pid:none) Aeromonas salmonicida subsp. sal... 144 2e-33 CP000759_80(CP000759|pid:none) Ochrobactrum anthropi ATCC 49188 ... 144 4e-33 CP000388_576(CP000388|pid:none) Pseudoalteromonas atlantica T6c,... 144 4e-33 CP001616_1064(CP001616|pid:none) Tolumonas auensis DSM 9187, com... 143 5e-33 CP000083_2116(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 143 5e-33 CP001133_964(CP001133|pid:none) Vibrio fischeri MJ11 chromosome ... 141 2e-32 CP000514_21(CP000514|pid:none) Marinobacter aquaeolei VT8, compl... 141 3e-32 BA000032_1018(BA000032|pid:none) Vibrio parahaemolyticus RIMD 22... 139 1e-31 AE006470_1798(AE006470|pid:none) Chlorobium tepidum TLS, complet... 139 1e-31 AE016825_3230(AE016825|pid:none) Chromobacterium violaceum ATCC ... 138 2e-31 CP000109_1988(CP000109|pid:none) Thiomicrospira crunogena XCL-2,... 137 3e-31 CP000472_3793(CP000472|pid:none) Shewanella piezotolerans WP3, c... 134 3e-30 AM167904_353(AM167904|pid:none) Bordetella avium 197N complete g... 134 4e-30 CP000510_3368(CP000510|pid:none) Psychromonas ingrahamii 37, com... 133 7e-30 CP001097_618(CP001097|pid:none) Chlorobium limicola DSM 245, com... 132 2e-29 CP000884_2968(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 132 2e-29 CP001099_1638(CP001099|pid:none) Chlorobaculum parvum NCIB 8327,... 132 2e-29 CP000607_509(CP000607|pid:none) Chlorobium phaeovibrioides DSM 2... 131 2e-29 CR522870_2154(CR522870|pid:none) Desulfotalea psychrophila LSv54... 131 3e-29 CP001101_1717(CP001101|pid:none) Chlorobium phaeobacteroides BS1... 130 4e-29 CP001392_2348(CP001392|pid:none) Diaphorobacter sp. TPSY, comple... 130 5e-29 CP001108_1619(CP001108|pid:none) Prosthecochloris aestuarii DSM ... 128 2e-28 CP000492_672(CP000492|pid:none) Chlorobium phaeobacteroides DSM ... 127 5e-28 CP000096_465(CP000096|pid:none) Pelodictyon luteolum DSM 273, co... 126 9e-28 CR626927_2849(CR626927|pid:none) Bacteroides fragilis NCTC 9343,... 125 2e-27 AP006841_3093(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 124 3e-27 CP000103_1774(CP000103|pid:none) Nitrosospira multiformis ATCC 2... 121 3e-26 CP000361_805(CP000361|pid:none) Arcobacter butzleri RM4018, comp... 117 4e-25 CP000482_2177(CP000482|pid:none) Pelobacter propionicus DSM 2379... 111 3e-23 CP000140_118(CP000140|pid:none) Parabacteroides distasonis ATCC ... 109 9e-23 CP001172_1212(CP001172|pid:none) Acinetobacter baumannii AB307-0... 108 2e-22 AE017340_1978(AE017340|pid:none) Idiomarina loihiensis L2TR, com... 107 3e-22 CR543861_1485(CR543861|pid:none) Acinetobacter sp. ADP1 complete... 107 3e-22 AE015928_4491(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 107 3e-22 CP001071_1155(CP001071|pid:none) Akkermansia muciniphila ATCC BA... 106 9e-22 CP000140_2109(CP000140|pid:none) Parabacteroides distasonis ATCC... 105 2e-21 AC151459_11(AC151459|pid:none) Medicago truncatula clone mth2-6e... 103 5e-21 CP000271_1640(CP000271|pid:none) Burkholderia xenovorans LB400 c... 101 2e-20 BT071419_1(BT071419|pid:none) Picea sitchensis clone WS0289_J21 ... 100 4e-20 EU284955_1(EU284955|pid:none) TSA: Elaeis guineensis EgEfMPOB001... 99 1e-19 AY568589_1(AY568589|pid:none) Capsicum annuum lipocalin protein ... 98 3e-19 BX640435_237(BX640435|pid:none) Bordetella parapertussis strain ... 97 4e-19 DQ222997_1(DQ222997|pid:none) Prunus persica temperature-induced... 96 1e-18 EF083095_1(EF083095|pid:none) Picea sitchensis clone WS02719_O07... 96 1e-18 DQ222986_1(DQ222986|pid:none) Gossypium arboreum temperature-ind... 95 2e-18 CP001089_148(CP001089|pid:none) Geobacter lovleyi SZ, complete g... 95 2e-18 CR382138_4(CR382138|pid:none) Debaryomyces hansenii strain CBS76... 95 2e-18 DQ222988_1(DQ222988|pid:none) Lycopersicon esculentum temperatur... 95 3e-18 DQ222990_1(DQ222990|pid:none) Glycine max temperature-induced li... 94 5e-18 DQ222992_1(DQ222992|pid:none) Pinus taeda temperature-induced li... 93 1e-17 EF148421_1(EF148421|pid:none) Populus trichocarpa x Populus delt... 92 1e-17 EF148398_1(EF148398|pid:none) Populus trichocarpa x Populus delt... 92 2e-17 AC151459_12(AC151459|pid:none) Medicago truncatula clone mth2-6e... 92 2e-17 DQ222987_1(DQ222987|pid:none) Populus balsamifera temperature-in... 92 2e-17 DQ222982_1(DQ222982|pid:none) Glycine max temperature-induced li... 91 3e-17 CP000116_1196(CP000116|pid:none) Thiobacillus denitrificans ATCC... 91 4e-17 CP000521_2756(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 91 4e-17 BT040799_1(BT040799|pid:none) Zea mays full-length cDNA clone ZM... 91 4e-17 DQ223001_1(DQ223001|pid:none) Citrus sinensis temperature-induce... 91 5e-17 CP001340_3590(CP001340|pid:none) Caulobacter crescentus NA1000, ... 91 5e-17 AE005673_3452(AE005673|pid:none) Caulobacter crescentus CB15, co... 91 5e-17 AY085685_1(AY085685|pid:none) Arabidopsis thaliana clone 17098 m... 90 7e-17 AB024029_6(AB024029|pid:none) Arabidopsis thaliana genomic DNA, ... 90 7e-17 DQ222985_1(DQ222985|pid:none) Mesembryanthemum crystallinum temp... 89 2e-16 DQ223000_1(DQ223000|pid:none) Gossypium arboreum temperature-ind... 89 2e-16 CU468230_907(CU468230|pid:none) Acinetobacter baumannii str. SDF... 89 2e-16 DQ222999_1(DQ222999|pid:none) Mesembryanthemum crystallinum temp... 89 2e-16 CP000158_2360(CP000158|pid:none) Hyphomonas neptunium ATCC 15444... 88 3e-16 AK068551_1(AK068551|pid:none) Oryza sativa Japonica Group cDNA c... 87 5e-16 EU963959_1(EU963959|pid:none) Zea mays clone 274570 unknown mRNA. 87 6e-16 BT039468_1(BT039468|pid:none) Zea mays full-length cDNA clone ZM... 87 8e-16 CP000142_2174(CP000142|pid:none) Pelobacter carbinolicus DSM 238... 86 1e-15 CP000616_443(CP000616|pid:none) Burkholderia vietnamiensis G4 ch... 86 1e-15 CP000712_1782(CP000712|pid:none) Pseudomonas putida F1, complete... 86 2e-15 AP009387_336(AP009387|pid:none) Burkholderia multivorans ATCC 17... 85 2e-15 BX842650_234(BX842650|pid:none) Bdellovibrio bacteriovorus compl... 85 3e-15 DQ222980_1(DQ222980|pid:none) Sorghum bicolor temperature-induce... 84 5e-15 AY077702_1(AY077702|pid:none) Triticum aestivum temperature stre... 84 7e-15 CP000094_356(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, c... 84 7e-15 AM459918_1(AM459918|pid:none) Vitis vinifera contig VV78X056834.... 84 7e-15 AK071108_1(AK071108|pid:none) Oryza sativa Japonica Group cDNA c... 82 1e-14 CP001111_2770(CP001111|pid:none) Stenotrophomonas maltophilia R5... 82 1e-14 CP000626_873(CP000626|pid:none) Vibrio cholerae O395 chromosome ... 82 2e-14 CP000269_3637(CP000269|pid:none) Janthinobacterium sp. Marseille... 82 2e-14 BA000012_3628(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 81 3e-14 EU219534_110(EU219534|pid:none) Salmonella enterica subsp. enter... 81 4e-14 BA000012_4460(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 80 6e-14 AM286690_869(AM286690|pid:none) Alcanivorax borkumensis SK2, com... 80 6e-14 AM039952_4048(AM039952|pid:none) Xanthomonas campestris pv. vesi... 80 7e-14 CU207211_3241(CU207211|pid:none) Herminiimonas arsenicoxydans ch... 80 9e-14 CP000438_5422(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 80 9e-14 AE008923_3901(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 79 1e-13 CP000492_1267(CP000492|pid:none) Chlorobium phaeobacteroides DSM... 79 2e-13 FM209186_5497(FM209186|pid:none) Pseudomonas aeruginosa LESB58 c... 78 4e-13 CP001281_2282(CP001281|pid:none) Thauera sp. MZ1T, complete geno... 77 6e-13 AE008922_2388(AE008922|pid:none) Xanthomonas campestris pv. camp... 77 6e-13 CP001097_1197(CP001097|pid:none) Chlorobium limicola DSM 245, co... 76 1e-12 CP000744_5763(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 75 2e-12 DQ222991_1(DQ222991|pid:none) Physcomitrella patens temperature-... 75 2e-12 CP001101_1285(CP001101|pid:none) Chlorobium phaeobacteroides BS1... 75 2e-12 AP008229_3003(AP008229|pid:none) Xanthomonas oryzae pv. oryzae M... 74 4e-12 AE008923_2519(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 74 4e-12 AM039952_2760(AM039952|pid:none) Xanthomonas campestris pv. vesi... 74 5e-12 CP000580_1175(CP000580|pid:none) Mycobacterium sp. JLS, complete... 74 5e-12 CP001111_3754(CP001111|pid:none) Stenotrophomonas maltophilia R5... 74 7e-12 AE015451_4968(AE015451|pid:none) Pseudomonas putida KT2440 compl... 73 9e-12 CP000323_1678(CP000323|pid:none) Psychrobacter cryohalolentis K5... 73 9e-12 AM743169_4117(AM743169|pid:none) Stenotrophomonas maltophilia K2... 72 2e-11 CP000932_334(CP000932|pid:none) Campylobacter lari RM2100, compl... 72 2e-11 CP000384_1148(CP000384|pid:none) Mycobacterium sp. MCS, complete... 72 2e-11 CP001157_4406(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 71 3e-11 CP001053_2994(CP001053|pid:none) Burkholderia phytofirmans PsJN ... 71 4e-11 CP000949_426(CP000949|pid:none) Pseudomonas putida W619, complet... 69 1e-10 CP000511_1479(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 69 2e-10 DQ465391_1(DQ465391|pid:none) Oreochromis mossambicus clone SSH ... 67 5e-10 CP001013_41(CP001013|pid:none) Leptothrix cholodnii SP-6, comple... 67 5e-10 CP000271_2778(CP000271|pid:none) Burkholderia xenovorans LB400 c... 67 6e-10 CP000926_5055(CP000926|pid:none) Pseudomonas putida GB-1, comple... 67 8e-10 CP000870_497(CP000870|pid:none) Burkholderia multivorans ATCC 17... 65 2e-09 AP009387_333(AP009387|pid:none) Burkholderia multivorans ATCC 17... 65 2e-09 AE006470_1086(AE006470|pid:none) Chlorobium tepidum TLS, complet... 65 2e-09 DQ223011_1(DQ223011|pid:none) Tortula ruralis temperature-induce... 65 2e-09 CP001504_820(CP001504|pid:none) Burkholderia glumae BGR1 chromos... 65 2e-09 CT573326_4735(CT573326|pid:none) Pseudomonas entomophila str. L4... 65 3e-09 AM902716_395(AM902716|pid:none) Bordetella petrii strain DSM 128... 63 1e-08 CP000555_3776(CP000555|pid:none) Methylibium petroleiphilum PM1,... 63 1e-08 CP000814_1443(CP000814|pid:none) Campylobacter jejuni subsp. jej... 62 2e-08 CP000529_1444(CP000529|pid:none) Polaromonas naphthalenivorans C... 61 3e-08 CP000150_60(CP000150|pid:none) Burkholderia sp. 383 chromosome 3... 60 1e-07 S49581(S49581) apolipoprotein D - mouse &X82648_1(X82648|pid:no... 60 1e-07 CP000377_2186(CP000377|pid:none) Silicibacter sp. TM1040, comple... 59 1e-07 AM039952_4365(AM039952|pid:none) Xanthomonas campestris pv. vesi... 57 5e-07 CP000264_3826(CP000264|pid:none) Jannaschia sp. CCS1, complete g... 57 7e-07 CP000361_1182(CP000361|pid:none) Arcobacter butzleri RM4018, com... 56 1e-06 (P23593) RecName: Full=Apolipoprotein D; Short=Apo-D; ... 55 2e-06 NRL(2APD) apolipoprotein D (theoretical model) - human 55 3e-06 AY893842_1(AY893842|pid:none) Synthetic construct Homo sapiens c... 55 3e-06 CP000270_2533(CP000270|pid:none) Burkholderia xenovorans LB400 c... 54 4e-06 AP008229_248(AP008229|pid:none) Xanthomonas oryzae pv. oryzae MA... 54 6e-06 (Q32KY0) RecName: Full=Apolipoprotein D; Short=Apo-D; ... 54 6e-06 CP000967_4854(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P... 54 6e-06 AE013598_266(AE013598|pid:none) Xanthomonas oryzae pv. oryzae KA... 54 6e-06 CU633870_111(CU633870|pid:none) Podospora anserina genomic DNA c... 54 6e-06 AE008922_4067(AE008922|pid:none) Xanthomonas campestris pv. camp... 53 1e-05 DQ239921_1(DQ239921|pid:none) Cervus elaphus apolipoprotein D (A... 53 1e-05 CP001053_1523(CP001053|pid:none) Burkholderia phytofirmans PsJN ... 52 2e-05 CP001504_1718(CP001504|pid:none) Burkholderia glumae BGR1 chromo... 52 2e-05 AY264809_1(AY264809|pid:none) Branchiostoma belcheri tsingtauens... 51 4e-05 AX742858_1(AX742858|pid:none) Sequence 12 from Patent WO03029471... 50 8e-05 (P37153) RecName: Full=Apolipoprotein D; Short=Apo-D; ... 48 3e-04 CP000927_140(CP000927|pid:none) Caulobacter sp. K31, complete ge... 48 3e-04 CP000532_127(CP000532|pid:none) Polaromonas naphthalenivorans CJ... 47 9e-04 CP000768_1567(CP000768|pid:none) Campylobacter jejuni subsp. doy... 46 0.001 BC122342_1(BC122342|pid:none) Danio rerio zgc:153593, mRNA (cDNA... 46 0.002 (P49291) RecName: Full=Lazarillo protein; Flags: Precursor; &U1... 45 0.003 BA000036_628(BA000036|pid:none) Corynebacterium glutamicum ATCC ... 45 0.003 CP000577_2231(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17... 44 0.008 CP001150_1936(CP001150|pid:none) Rhodobacter sphaeroides KD131 c... 44 0.008 AE014134_251(AE014134|pid:none) Drosophila melanogaster chromoso... 44 0.008 AE008922_3459(AE008922|pid:none) Xanthomonas campestris pv. camp... 44 0.008 AM039952_683(AM039952|pid:none) Xanthomonas campestris pv. vesic... 42 0.017 AE008923_623(AE008923|pid:none) Xanthomonas axonopodis pv. citri... 42 0.022 AX742867_1(AX742867|pid:none) Sequence 21 from Patent WO03029471. 42 0.029 CP000697_52(CP000697|pid:none) Acidiphilium cryptum JF-5, comple... 41 0.049 CP000431_2523(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 40 0.11 BA000035_645(BA000035|pid:none) Corynebacterium efficiens YS-314... 39 0.14 AP008229_3775(AP008229|pid:none) Xanthomonas oryzae pv. oryzae M... 39 0.19 CP000685_4632(CP000685|pid:none) Flavobacterium johnsoniae UW101... 39 0.19 CP000967_851(CP000967|pid:none) Xanthomonas oryzae pv. oryzae PX... 39 0.19 AE013598_3913(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K... 39 0.19 AK294523_1(AK294523|pid:none) Homo sapiens cDNA FLJ57921 complet... 38 0.32 BT046944_1(BT046944|pid:none) Salmo salar clone ssal-eve-502-044... 38 0.41 BT050326_1(BT050326|pid:none) Salmo salar clone ssal-rgb2-562-20... 37 0.54 AP011115_2281(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 37 0.70 DQ126070_1(DQ126070|pid:none) Triatoma infestans triatin mRNA, c... 37 0.92 AY197704_1(AY197704|pid:none) Schistocerca americana Lazarillo g... 37 0.92 FJ411293_1(FJ411293|pid:none) Periplaneta americana Per a 4 alle... 37 0.92 AY766386_1(AY766386|pid:none) Protoceratium reticulatum lucifera... 36 1.2 CU207366_1941(CU207366|pid:none) Gramella forsetii KT0803 comple... 36 1.6 AM236086_568(AM236086|pid:none) Rhizobium leguminosarum bv. vici... 35 2.0 CS038855_1(CS038855|pid:none) Sequence 34 from Patent WO20050192... 35 2.7 BC152209_1(BC152209|pid:none) Danio rerio retinol binding protei... 35 2.7 AB111522_1(AB111522|pid:none) Carassius auratus mRNA for purpuri... 35 2.7 CS038840_1(CS038840|pid:none) Sequence 19 from Patent WO20050192... 35 3.5 EF134127_1(EF134127|pid:none) Karlodinium micrum strain CCMP1975... 35 3.5 EU325561_1(EU325561|pid:none) Helicoverpa armigera clone HaC5S00... 34 4.6 BT048970_1(BT048970|pid:none) Salmo salar clone ssal-eve-540-371... 34 4.6 AY766382_1(AY766382|pid:none) Alexandrium affine luciferase gene... 34 4.6 EU325855_1(EU325855|pid:none) Oncorhynchus masou formosanus reti... 34 4.6 BC068619_1(BC068619|pid:none) Xenopus laevis serum retinol bindi... 34 4.6 EF600047_1(EF600047|pid:none) Helicoverpa armigera multi-domain ... 34 6.0 CR931716_11(CR931716|pid:none) Streptococcus pneumoniae strain 2... 34 6.0 (P09464) RecName: Full=Bilin-binding protein; Short=BBP... 34 6.0 (P24775) RecName: Full=Plasma retinol-binding protein 2; AltName... 34 6.0 NRL(1BBPA) insecticyanin (bilin binding protein), chain A - cabb... 34 6.0 AY113374_1(AY113374|pid:none) Drosophila melanogaster LP06948 fu... 33 7.8 (Q9VGW1) RecName: Full=Cadherin-86C; Flags: Precursor; &AE01429... 33 7.8 AE001437_39(AE001437|pid:none) Clostridium acetobutylicum ATCC 8... 33 7.8 (P24774) RecName: Full=Plasma retinol-binding protein 1; ... 33 7.8 EU325566_1(EU325566|pid:none) Helicoverpa armigera clone CA707 p... 33 7.8
>CP000685_2124(CP000685|pid:none) Flavobacterium johnsoniae UW101, complete genome. Length = 180
Score = 192 bits (487), Expect = 1e-47 Identities = 98/174 (56%), Positives = 122/174 (70%) Frame = +2
Query: 47 ILIGATILGGVTYAYNSFKRYIPEGVHAVKPFYPEKYVGKWYEIARLYTYFEKDLDKITA 226 +LIGA G+ A S IPE AV F KY+GKWYEIARL +E+DL+ +TA Sbjct: 9 VLIGA----GIGLALYSCGGGIPEKAKAVTNFDSAKYLGKWYEIARLDYKWERDLNNVTA 64
Query: 227 EYSINKDGSITVVNSGYNYKKKKRENAKGIAYFVNGSDEGMLKVSFFGPFYSGYNVIAID 406 EYS+N+D +I V N GYN KK K E + G A FV + GMLKVSFFGPFYSGYNV+AID Sbjct: 65 EYSLNEDKTIKVDNKGYNVKKDKWEQSVGKAKFVKKDNIGMLKVSFFGPFYSGYNVVAID 124
Query: 407 PDYKYALIAGQSFDYMWILSKEPTIPEKIKNSYLELAKSVGYDITKLIWSKQNE 568 PDYKYAL+AG+S YMWILS+E TIPE +K +L A+ +GY +T L+W K ++ Sbjct: 125 PDYKYALVAGESLKYMWILSREKTIPESVKADFLIKAQEIGYKVTDLVWVKHDK 178
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3236559 Number of Hits to DB: 941,791,412 Number of extensions: 17350857 Number of successful extensions: 61806 Number of sequences better than 10.0: 244 Number of HSP's gapped: 61614 Number of HSP's successfully gapped: 245 Length of query: 258 Length of database: 1,051,180,864 Length adjustment: 126 Effective length of query: 132 Effective length of database: 643,374,430 Effective search space: 84925424760 Effective search space used: 84925424760 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 31 (16.5 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
8 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |