| Contig-U13324-1 |
| Contig ID |
Contig-U13324-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
189 |
| Chromosome number (1..6, M) |
4 |
| Chromosome length |
5430582 |
| Start point |
5031005 |
| End point |
5031155 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
1 |
| Number of EST |
1 |
| Link to clone list |
U13324 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.12. 7 |
| Homology vs DNA |
Query= Contig-U13324-1 (Contig-U13324-1Q) /CSM_Contig/Contig-U13324-1Q.Seq.d
(189 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU034373) Dictyostelium discoideum slug cDNA, clone SLC768. 210 1e-50 1
(AC116925) Dictyostelium discoideum chromosome 2 map 4189423... 82 8e-12 1
(EJ122610) 1092343379898 Global-Ocean-Sampling_GS-27-01-01-1... 42 0.001 2
(EK583739) 1095522019074 Global-Ocean-Sampling_GS-32-01-01-1... 40 0.003 2
(BH996176) oef89a05.b1 B.oleracea002 Brassica oleracea genom... 48 0.11 1
(CU856418) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.42 1
(CR394559) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 0.42 1
(EJ909424) 1093018530975 Global-Ocean-Sampling_GS-30-02-01-1... 46 0.42 1
(EJ902081) 1093018494495 Global-Ocean-Sampling_GS-30-02-01-1... 46 0.42 1
(ED765403) GM_WBb0138A16.f GM_WBb Glycine max genomic clone ... 46 0.42 1
(CP000396) Borrelia afzelii PKo plasmid lp60, complete seque... 46 0.42 1
(AE001584) Borrelia burgdorferi B31 plasmid lp56, complete s... 46 0.42 1
(AE000787) Borrelia burgdorferi B31 plasmid lp38, complete s... 46 0.42 1
(AE000785) Borrelia burgdorferi B31 plasmid lp25, complete s... 46 0.42 1
(AC025148) Homo sapiens chromosome 3 clone RP11-265F19 map 3... 42 0.61 2
(CX539912) s13dNF0FF04GS031_463096 Germinating Seed Medicago... 40 0.65 2
(CX527641) s13dNF45G07AT056_515794 Aphid-Infected Shoots Med... 40 0.70 2
(CX530808) s13dNF33D10MJ079_247631 Methyl Jasmonate-Elicited... 40 0.78 2
(BI265627) NF096B11IN1F1093 Insect herbivory Medicago trunca... 40 0.78 2
(BE322245) NF022D04IN1F1031 Insect herbivory Medicago trunca... 40 0.82 2
(AC185357) Populus trichocarpa clone Pop1-29F24, complete se... 36 0.87 2
(AC214098) Populus trichocarpa clone POP027-N14, complete se... 36 0.88 2
(DW016147) EST1225108 MTY Medicago truncatula cDNA clone MTY... 40 0.93 2
(EJ561715) 1092959660633 Global-Ocean-Sampling_GS-29-01-01-1... 42 0.95 2
(EY477958) METB862TF JCVI-MT3 Medicago truncatula cDNA 5', m... 40 0.96 2
(ER387521) 1094428705039 Global-Ocean-Sampling_GS-34-01-01-1... 42 0.99 2
(EK365049) 1095469393221 Global-Ocean-Sampling_GS-31-01-01-1... 34 1.0 2
(AM607845) Entamoeba invadens IP1 GSS, clone inv083f10.p1k. 36 1.1 2
(EJ023677) 1095454012070 Global-Ocean-Sampling_GS-26-01-01-1... 36 1.2 2
(CR932966) Medicago truncatula chromosome 5 clone mth2-45l22... 44 1.6 1
(AC216691) Populus trichocarpa clone POP102-M12, complete se... 44 1.6 1
(AC090451) Homo sapiens chromosome 8, clone RP11-318N11, com... 44 1.6 1
(AC087856) Homo sapiens chromosome 8, clone RP11-4K16, compl... 44 1.6 1
(AC009514) Homo sapiens chromosome 8 clone RP11-4K16, comple... 44 1.6 1
(AC104486) Sus scrofa clone RP44-82G22, WORKING DRAFT SEQUEN... 44 1.6 1
(AC104485) Sus scrofa clone RP44-73K12, WORKING DRAFT SEQUEN... 44 1.6 1
(AC104480) Sus scrofa clone RP44-327E13, WORKING DRAFT SEQUE... 44 1.6 1
(CU914741) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.6 1
(CU469060) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.6 1
(AC169838) Macaca mulatta clone CH250-104B14, WORKING DRAFT ... 44 1.6 1
(AZ193559) SP_1023_B1_E08_T7A Strongylocentrotus purpuratus,... 44 1.6 1
(AQ855068) CpG1948A CpIOWAgDNA1 Cryptosporidium parvum genom... 44 1.6 1
(EK220396) 1095460138990 Global-Ocean-Sampling_GS-31-01-01-1... 44 1.6 1
(EJ785570) 1093017313992 Global-Ocean-Sampling_GS-30-02-01-1... 44 1.6 1
(EJ704688) 1092956049099 Global-Ocean-Sampling_GS-30-02-01-1... 44 1.6 1
(CT146344) Sus scrofa genomic clone CH242-239N2, genomic sur... 44 1.6 1
(AG231752) Lotus japonicus DNA, clone:LjB22e05_r. 44 1.6 1
(EL367833) CCES3994.b1_D15.ab1 CCE(LMS) endive Cichorium end... 44 1.6 1
(EL366385) CCES2478.b1_L19.ab1 CCE(LMS) endive Cichorium end... 44 1.6 1
(EH701438) CCIS1353.b1_A04.ab1 CCI(LMS) chicory Cichorium in... 44 1.6 1
(EH699992) CCIS12197.b1_J02.ab1 CCI(LMS) chicory Cichorium i... 44 1.6 1
(EH691938) CCIM4093.b1_I16.ab1 CCI(LMS) chicory Cichorium in... 44 1.6 1
(AV763289) Homo sapiens cDNA clone:MDSBPE06, 5'end, expresse... 44 1.6 1
(BB700863) Mus musculus in vitro fertilized eggs cDNA, RIKEN... 44 1.6 1
(AL929072) Zebrafish DNA sequence from clone CH211-140B8. 36 1.8 3
(BX322662) Zebrafish DNA sequence from clone CH211-222C18 in... 42 2.8 3
(BX323799) Zebrafish DNA sequence from clone CH211-159B19 in... 34 3.2 2
(BX004781) Zebrafish DNA sequence from clone CH211-149G8 in ... 34 3.2 2
(CR376794) Zebrafish DNA sequence from clone CH211-188F17 in... 34 3.2 2
(ER523476) 1093015607485 Global-Ocean-Sampling_GS-35-01-01-1... 34 3.4 2
(EJ327920) 1092963405164 Global-Ocean-Sampling_GS-28-01-01-1... 38 4.2 2
(ER551369) 1093016235325 Global-Ocean-Sampling_GS-35-01-01-1... 34 4.2 2
(BZ387733) EINBU83TF EI_10_12_KB Entamoeba invadens genomic ... 34 4.2 2
(BX134226) Danio rerio genomic clone DKEY-86K4, genomic surv... 34 4.3 2
(EJ679361) 1092955117498 Global-Ocean-Sampling_GS-30-02-01-1... 34 4.4 2
(EK358605) 1095468840641 Global-Ocean-Sampling_GS-31-01-01-1... 32 4.7 3
(AL845435) Zebrafish DNA sequence from clone CH211-176G13 in... 38 5.0 3
(AM459071) Vitis vinifera contig VV78X222835.4, whole genome... 38 5.8 2
(BX649477) Zebrafish DNA sequence from clone CH211-265K4 in ... 38 6.0 4
(CU694478) Zebrafish DNA sequence from clone DKEY-172M5 in l... 42 6.5 1
(BX901876) Zebrafish DNA sequence from clone CH211-140G2 in ... 42 6.5 1
(BX548042) Zebrafish DNA sequence from clone DKEY-146L4 in l... 42 6.5 1
(BX537323) Zebrafish DNA sequence from clone DKEYP-122E2 in ... 42 6.5 1
(DQ127555) Emiliania huxleyi virus 163 clone combi64+65+66.s... 42 6.5 1
(AJ890364) Emiliania huxleyi virus 86 isolate EhV86. 42 6.5 1
(AC099601) Mus musculus chromosome 7, clone RP23-240K1, comp... 42 6.5 1
(AC193618) Pan troglodytes BAC clone CH251-276J6 from chromo... 42 6.5 1
(AC145839) Microcebus murinus clone CH257-408H17, complete s... 42 6.5 1
(EF513093) Lecanicillium lecanii isolate IMI 331550R NADH de... 42 6.5 1
(EF513092) Lecanicillium lecanii isolate IMI 317425R NADH de... 42 6.5 1
(AM486803) Vitis vinifera contig VV78X146787.1, whole genome... 42 6.5 1
(AF383683) Lasianthaea macrocephala NADH dehydrogenase subun... 42 6.5 1
(AF083031) Guillardia theta nucleomorph chromosome 3, comple... 42 6.5 1
(AC216769) Populus trichocarpa clone POP038-H04, complete se... 42 6.5 1
(AC146861) Medicago truncatula clone mth2-31p22, complete se... 42 6.5 1
(AC141108) Medicago truncatula clone mth2-22g6, complete seq... 42 6.5 1
(EF623241) Agnetina capitata 16S ribosomal RNA gene, partial... 42 6.5 1
(AL136504) Homo sapiens chromosome 3 sequence from BAC 139I2... 42 6.5 1
(AC055733) Homo sapiens 3 BAC RP11-39E3 (Roswell Park Cancer... 42 6.5 1
(AC003684) Homo sapiens X BAC GS1-519E5 (Genome Systems Huma... 42 6.5 1
(AC129704) Rattus norvegicus clone CH230-9I1, *** SEQUENCING... 42 6.5 1
(AC128043) Rattus norvegicus clone CH230-505K5, *** SEQUENCI... 42 6.5 1
(AC097078) Rattus norvegicus clone CH230-83E5, *** SEQUENCIN... 42 6.5 1
(CU928089) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 6.5 1
(CU856671) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 6.5 1
(CU582865) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 6.5 1
(CU424441) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 6.5 1
(CR385051) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 42 6.5 1
(AC213101) Pongo abelii chromosome UNKNOWN clone CH276-498K2... 42 6.5 1
(AC199075) Zea mays chromosome 7 clone CH201-81E24; ZMMBBc00... 42 6.5 1
>(AU034373) Dictyostelium discoideum slug cDNA, clone SLC768.
Length = 190
Score = 210 bits (106), Expect = 1e-50
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 84 ctacatttacagttgaagttgtaggagtagcagttgcagattgaattgaaagattattga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 ctacatttacagttgaagttgtaggagtagcagttgcagattgaattgaaagattattga 143
Query: 144 tgatttaaaaaatttaataataataccagttttgataaagcagttg 189
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 tgatttaaaaaatttaataataataccagttttgataaagcagttg 189
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 165,111,785
Number of extensions: 15486090
Number of successful extensions: 3936439
Number of sequences better than 10.0: 161
Length of query: 189
Length of database: 95,242,211,685
Length adjustment: 22
Effective length of query: 167
Effective length of database: 93,199,600,587
Effective search space: 15564333298029
Effective search space used: 15564333298029
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
|
| protein update |
2009. 7. 6 |
| Homology vs Protein |
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
1 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |