Contig-U02156-1
Contig ID Contig-U02156-1
Contig update 2001. 8.29
Contig sequence
>Contig-U02156-1 (Contig-U02156-1Q) /CSM_Contig/Contig-U02156-1Q.Seq.d
ANACNATTGCNATTNCNCAACCATNATNATNATCNCAAAATCNAATTNTT
TTAATTGNATNTTCNAGANATCNAATTAANATTTGGCNATTAGGGTCNAC
TAATGATAANAATGANAATTTAGATTTACCNAATGGGACCCNTTTNAATT
TATCNAAAAAAACTAAAAAATTATTNCNATTTGNATCNAANAATTCNGAA
AANATTGANAANGNTGANATTTCNAANAANGGNGAANANTTTTGNTTTTC
NACTAGATTANNAACNAAATTATATTCCATTCNAAANAAACNAGAAAANA
GNGNTAATATTATAATTAAAAAGGNTGNATTA

Gap no gap
Contig length 332
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U02156
List of clone(s)

est1=VFF822Z,1,333
Translated Amino Acid sequence
TIAIXQPXXXSQNXIXLIXXSRXXIXIWXLGSTNDXNXNLDLPNGTXXNLSKKTKKLXXF
XSXNSEXIXXXXISXXGEXFXFSTRLXTKLYSIXXKXEXXXNIIIKKXXL


Translated Amino Acid sequence (All Frames)
Frame A:
xxlxxxnhxxxxkixxf*lxxxxixlxfgx*gxlmixmxi*iyxmgpxxiyxkklknyxx
lxxxixkxlxxxxfxxxxxxfxfxldxxxnyipfxxnxkxxxil*lkrxx


Frame B:
xxcxxxtxxxixksnxfnxxfxxsn*xlairvx***x*xfrftxwdpfxfixkn*kiixi
xixxfxkx*xx*xfxxxxxxlxfx*ixnxiifhskxtrkxx*yyn*kgxi


Frame C:
TIAIXQPXXXSQNXIXLIXXSRXXIXIWXLGSTNDXNXNLDLPNGTXXNLSKKTKKLXXF
XSXNSEXIXXXXISXXGEXFXFSTRLXTKLYSIXXKXEXXXNIIIKKXXL


own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U02156-1 (Contig-U02156-1Q)
/CSM_Contig/Contig-U02156-1Q.Seq.d
(332 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U02156-1 (Contig-U02156-1Q) /CSM_Contig/Conti... 143 1e-34
Contig-U13961-1 (Contig-U13961-1Q) /CSM_Contig/Conti... 34 0.090
Contig-U11327-1 (Contig-U11327-1Q) /CSM_Contig/Conti... 34 0.090
Contig-U11292-1 (Contig-U11292-1Q) /CSM_Contig/Conti... 32 0.36
Contig-U13461-1 (Contig-U13461-1Q) /CSM_Contig/Conti... 30 1.4
Contig-U13114-1 (Contig-U13114-1Q) /CSM_Contig/Conti... 30 1.4
Contig-U12061-1 (Contig-U12061-1Q) /CSM_Contig/Conti... 30 1.4
Contig-U11704-1 (Contig-U11704-1Q) /CSM_Contig/Conti... 30 1.4
Contig-U11466-1 (Contig-U11466-1Q) /CSM_Contig/Conti... 30 1.4
Contig-U09327-1 (Contig-U09327-1Q) /CSM_Contig/Conti... 30 1.4

>Contig-U02156-1 (Contig-U02156-1Q) /CSM_Contig/Contig-U02156-1Q.Seq.d
Length = 332

Score = 143 bits (72), Expect = 1e-34
Identities = 162/162 (100%)
Strand = Plus / Plus


Query: 171 ttattncnatttgnatcnaanaattcngaaaanattganaangntganatttcnaanaan 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 ttattncnatttgnatcnaanaattcngaaaanattganaangntganatttcnaanaan 230


Query: 231 ggngaananttttgnttttcnactagattannaacnaaattatattccattcnaaanaaa 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ggngaananttttgnttttcnactagattannaacnaaattatattccattcnaaanaaa 290


Query: 291 cnagaaaanagngntaatattataattaaaaaggntgnatta 332
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cnagaaaanagngntaatattataattaaaaaggntgnatta 332


Score = 129 bits (65), Expect = 2e-30
Identities = 143/149 (95%)
Strand = Plus / Plus


Query: 6 attgcnattncncaaccatnatnatnatcncaaaatcnaannnnnnnaattgnatnttcn 65
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 6 attgcnattncncaaccatnatnatnatcncaaaatcnaattnttttaattgnatnttcn 65


Query: 66 aganatcnaattaanatttggcnattagggtcnactaatgataanaatganaatttagat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aganatcnaattaanatttggcnattagggtcnactaatgataanaatganaatttagat 125


Query: 126 ttaccnaatgggacccntttnaatttatc 154
|||||||||||||||||||||||||||||
Sbjct: 126 ttaccnaatgggacccntttnaatttatc 154


>Contig-U13961-1 (Contig-U13961-1Q) /CSM_Contig/Contig-U13961-1Q.Seq.d
Length = 380

Score = 34.2 bits (17), Expect = 0.090
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 305 taatattataattaaaa 321
|||||||||||||||||
Sbjct: 171 taatattataattaaaa 187


>Contig-U11327-1 (Contig-U11327-1Q) /CSM_Contig/Contig-U11327-1Q.Seq.d
Length = 1482

Score = 34.2 bits (17), Expect = 0.090
Identities = 17/17 (100%)
Strand = Plus / Minus


Query: 305 taatattataattaaaa 321
|||||||||||||||||
Sbjct: 1467 taatattataattaaaa 1451


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1187
Number of Sequences: 6905
Number of extensions: 1187
Number of successful extensions: 105
Number of sequences better than 10.0: 41
length of query: 332
length of database: 5,674,871
effective HSP length: 15
effective length of query: 317
effective length of database: 5,571,296
effective search space: 1766100832
effective search space used: 1766100832
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5.15
Homology vs DNA
Query= Contig-U02156-1 (Contig-U02156-1Q) /CSM_Contig/Contig-U02156-1Q.Seq.d
(332 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ428494) Dictyostelium discoideum cDNA clone:ddv12l06, 3' ... 165 2e-73 2

>(BJ428494) Dictyostelium discoideum cDNA clone:ddv12l06, 3' end,
single read.
Length = 333

Score = 165 bits (83), Expect(2) = 2e-73
Identities = 149/149 (100%)
Strand = Plus / Minus


Query: 6 attgcnattncncaaccatnatnatnatcncaaaatcnaattnttttaattgnatnttcn 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 attgcnattncncaaccatnatnatnatcncaaaatcnaattnttttaattgnatnttcn 269


Query: 66 aganatcnaattaanatttggcnattagggtcnactaatgataanaatganaatttagat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aganatcnaattaanatttggcnattagggtcnactaatgataanaatganaatttagat 209


Query: 126 ttaccnaatgggacccntttnaatttatc 154
|||||||||||||||||||||||||||||
Sbjct: 208 ttaccnaatgggacccntttnaatttatc 180

Score = 143 bits (72), Expect(2) = 2e-73
Identities = 162/162 (100%)
Strand = Plus / Minus


Query: 171 ttattncnatttgnatcnaanaattcngaaaanattganaangntganatttcnaanaan 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 ttattncnatttgnatcnaanaattcngaaaanattganaangntganatttcnaanaan 104


Query: 231 ggngaananttttgnttttcnactagattannaacnaaattatattccattcnaaanaaa 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 ggngaananttttgnttttcnactagattannaacnaaattatattccattcnaaanaaa 44


Query: 291 cnagaaaanagngntaatattataattaaaaaggntgnatta 332
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 cnagaaaanagngntaatattataattaaaaaggntgnatta 2

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 78,240,592
Number of extensions: 5068830
Number of successful extensions: 269808
Number of sequences better than 10.0: 1
Length of query: 332
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 309
Effective length of database: 99,442,330,388
Effective search space: 30727680089892
Effective search space used: 30727680089892
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.19
Homology vs Protein
Query= Contig-U02156-1 (Contig-U02156-1Q) /CSM_Contig/Contig-U02156-1Q.Seq.d
(332 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 152,808,810
Number of extensions: 6875022
Number of successful extensions: 155
Number of sequences better than 10.0: 0
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 0
Length of query: 110
Length of database: 1,051,180,864
Length adjustment: 77
Effective length of query: 33
Effective length of database: 801,965,821
Effective search space: 26464872093
Effective search space used: 26464872093
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 28 (15.4 bits)

PSORT

psg: 0.85 gvh: 0.53 alm: 0.46 top: 0.47 tms: 0.00 mit: 0.32 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: mitochondrial
24.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: vacuolar
4.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for Contig-U02156-1 is mit

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0