>Contig-U13291-1 (Contig-U13291-1Q) /CSM_Contig/Contig-U13291-1Q.Seq.d
NNNNNNNNNNAANCAACNTTNGNNCCNACTATNAAACCAACTGAAAAACC
NACTGAAAAACCNACTGAAAAACCNACNGACATTTCCNANANANAAACCC
NTTGAAAAAAGNTTTTNTAAA

est1=SHK219Z,1,112

XXXXQXXXXLXNQLKNXLKNXLKNXXTFPXXKPXEKXFXK

Frame A:
xxxxxtxxptxkptekptekptekptdisxxxtx*kkxx*


Frame B:
XXXXQXXXXLXNQLKNXLKNXLKNXXTFPXXKPXEKXFXK


Frame C:
xxxxnxxxxyxtn*ktx*ktx*ktxxhfxxxnplkkxfx

Query= Contig-U13291-1 (Contig-U13291-1Q)
/CSM_Contig/Contig-U13291-1Q.Seq.d
         (121 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13291-1 (Contig-U13291-1Q) /CSM_Contig/Conti...   115  1e-26
Contig-U13263-1 (Contig-U13263-1Q) /CSM_Contig/Conti...    74  4e-14
Contig-U12827-1 (Contig-U12827-1Q) /CSM_Contig/Conti...    70  6e-13
Contig-U11305-1 (Contig-U11305-1Q) /CSM_Contig/Conti...    30  0.47
Contig-U09095-1 (Contig-U09095-1Q) /CSM_Contig/Conti...    30  0.47
Contig-U02593-1 (Contig-U02593-1Q) /CSM_Contig/Conti...    30  0.47
Contig-U12282-1 (Contig-U12282-1Q) /CSM_Contig/Conti...    28  1.9
Contig-U11661-1 (Contig-U11661-1Q) /CSM_Contig/Conti...    28  1.9
Contig-U14715-1 (Contig-U14715-1Q) /CSM_Contig/Conti...    26  7.4
Contig-U14648-1 (Contig-U14648-1Q) /CSM_Contig/Conti...    26  7.4

>Contig-U13291-1 (Contig-U13291-1Q) /CSM_Contig/Contig-U13291-1Q.Seq.d
          Length = 121

 Score =  115 bits (58), Expect = 1e-26
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                       
Query: 28  actatnaaaccaactgaaaaaccnactgaaaaaccnactgaaaaaccnacngacatttcc 87
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28  actatnaaaccaactgaaaaaccnactgaaaaaccnactgaaaaaccnacngacatttcc 87

                                             
Query: 88  nanananaaacccnttgaaaaaagnttttntaaa 121
           ||||||||||||||||||||||||||||||||||
Sbjct: 88  nanananaaacccnttgaaaaaagnttttntaaa 121


>Contig-U13263-1 (Contig-U13263-1Q) /CSM_Contig/Contig-U13263-1Q.Seq.d
          Length = 135

 Score = 73.8 bits (37), Expect = 4e-14
 Identities = 80/88 (90%)
 Strand = Plus / Plus

                                                                       
Query: 34  aaaccaactgaaaaaccnactgaaaaaccnactgaaaaaccnacngacatttccnanana 93
           ||||| ||||||||||||| | ||||||||| |||||||||||||||||| |||||||||
Sbjct: 47  aaaccnactgaaaaaccnantnaaaaaccnantgaaaaaccnacngacatntccnanana 106

                                       
Query: 94  naaacccnttgaaaaaagnttttntaaa 121
           ||||||||||| |||||| |||| ||||
Sbjct: 107 naaacccnttgnaaaaagtttttttaaa 134


>Contig-U12827-1 (Contig-U12827-1Q) /CSM_Contig/Contig-U12827-1Q.Seq.d
          Length = 156

 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                          
Query: 28  actatnaaaccaactgaaaaaccnactgaaaaaccnactgaaaaacc 74
           ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 99  actatnaaaccnactgaaaaaccnactgaaaaaccnactgaaaaacc 145


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 178
Number of Sequences: 6905
Number of extensions: 178
Number of successful extensions: 69
Number of sequences better than 10.0: 18
length of query: 121
length of database: 5,674,871
effective HSP length: 14
effective length of query: 107
effective length of database: 5,578,201
effective search space: 596867507
effective search space used: 596867507
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)

Query= Contig-U13291-1 (Contig-U13291-1Q) /CSM_Contig/Contig-U13291-1Q.Seq.d
         (121 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ407911) Dictyostelium discoideum cDNA clone:dds44e06, 3' ...    44   0.98   1

>(BJ407911) Dictyostelium discoideum cDNA clone:dds44e06, 3' end,
           single read.
          Length = 112

 Score = 44.1 bits (22), Expect = 0.98
 Identities = 43/43 (100%)
 Strand = Plus / Minus


Query: 79  gacatttccnanananaaacccnttgaaaaaagnttttntaaa 121
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  gacatttccnanananaaacccnttgaaaaaagnttttntaaa 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 11,973,700
Number of extensions: 355105
Number of successful extensions: 2477
Number of sequences better than 10.0: 1
Length of query: 121
Length of database: 95,242,211,685
Length adjustment: 22
Effective length of query: 99
Effective length of database: 93,199,600,587
Effective search space: 9226760458113
Effective search space used: 9226760458113
X1: 11 (21.8 bits)
S2: 20 (40.1 bits)

Query= Contig-U13291-1 (Contig-U13291-1Q) /CSM_Contig/Contig-U13291-1Q.Seq.d
         (121 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 30,726,183
Number of extensions: 3415055
Number of sequences better than 10.0: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 40
Length of database: 1,051,180,864
Length adjustment: 14
Effective length of query: 26
Effective length of database: 1,005,869,038
Effective search space: 26152594988
Effective search space used: 26152594988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 24 (13.9 bits)

 psg: 0.53  gvh: 0.32  alm: 0.70  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 28.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for Contig-U13291-1 is cyt