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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U13271-1
Contig ID Contig-U13271-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13271-1 (Contig-U13271-1Q) /CSM_Contig/Contig-U13271-1Q.Seq.d
TTAGAAATNATCAAAGAGAGAAATGAGTAAACAATTGATTTCACTTTGGA
CTGCAGAGAATAAAGTTTGTCGTCAACTTTTGGATAGAATTTTCCCAAGA
GGTTTAGTTCAATTCTTGGATTCACAAGAGGAGGCACCAAAAGAACAATT
GTTAGAAAGTAAACAAGGTACAACCGGTCCAAAACATATTAAATTGGGTG
TGTTTGCCAATTGGAGAATGAAAAAGATCATTAAAACCAGAGAACTCATG
GCAAAGGCAACCACTCGTGTTAGAAAGGAAACTAAACCAATGAGACCTTA
CAATTGGGCAATGTTTTTCCATCAATTCAATCAAGATCATCGTGATGCAA
ATCTAATTTGGAATCATACAACTCGTGAAGAGTTGAGAGAATCAATGGAT
AATGAAATTCGTCTCTTCCAACAAGAGTTGGAAGCCGCTGGTAGAGAACC
AATCGCATGGAATGATGAAGATTTCGAGGTTCCTTATCCATCATTAAAGA
AGGAGATCTCTGTCGGTGGTTATTATATCTCTTTATTGGTTGATGGCACT
AGCAAAGGTATTAAACTCATTAATCCAGGTTTATTCTTTAACGAGTTATG
GCAAAACTTCCTCTTAAATGAATCAGCCGATCAAAAAGCTCTTTGTTTAC
GTGCAATGACATTGGTATTCACTCATTATCATACTCATCCATCAATGACT
CATCCATTCTCAAATCTTTCACATTTAATCGAATTACTAGAGAATACATT
CGATGTTATCCTTAGAGATCGTTTGTTATTGTTTATTCGTAGTTTACTTC
AAGTTAAATCAAATGCCAAGATTTTCATTGATAATCGTGGTATCTATAGA
TTATTGGATTTAATTACATTGATTCATACTCATTACACCTATGGTGAAGA
AGGTAAACTATTACCAGAATGGTATTATGCTGTCGATGTTCAACAA
Gap no gap
Contig length 946
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 4313877
End point 4312931
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U13271
List of clone(s) 

est1=VHO709F,1,703
est2=SHG323F,371,946
Translated Amino Acid sequence 
*KXSKREMSKQLISLWTAENKVCRQLLDRIFPRGLVQFLDSQEEAPKEQLLESKQGTTGP
KHIKLGVFANWRMKKIIKTRELMAKATTRVRKETKPMRPYNWAMFFHQFNQDHRDANLIW
NHTTREELRESMDNEIRLFQQELEAAGREPIAWNDEDFEVPYPSLKKEISVGGYYISLLV
DGTSKGIKLINPGLFFNELWQNFLLNESADQKALCLRAMTLVFTHYHTHPSMTHPFSNLS
HLIELLENTFDVILRDRLLLFIRSLLQVKSNAKIFIDNRGIYRLLDLITLIHTHYTYGEE
GKLLPEWYYAVDVQQ
Translated Amino Acid sequence (All Frames) 
Frame A:
lexikerne*tidftldcre*slsstfg*nfpkrfssilgftrggtkrtivrk*trynrs
kty*igcvcqlenekdh*nqrthgkgnhsc*kgn*tnetlqlgnvfpsiqsrss*cksnl
esyns*rvering**nsslptrvgsrw*rtnrme**rfrgslsiikegdlcrwllylfig
*wh*qry*th*srfil*rvmaklplk*isrsksslftcndigihslsyssindssilksf
tfnritreyircyp*rsfvivys*ftss*ikcqdfh**swyl*iigfnyidsyslhlw*r
r*titrmvlccrcst


Frame B:
*KXSKREMSKQLISLWTAENKVCRQLLDRIFPRGLVQFLDSQEEAPKEQLLESKQGTTGP
KHIKLGVFANWRMKKIIKTRELMAKATTRVRKETKPMRPYNWAMFFHQFNQDHRDANLIW
NHTTREELRESMDNEIRLFQQELEAAGREPIAWNDEDFEVPYPSLKKEISVGGYYISLLV
DGTSKGIKLINPGLFFNELWQNFLLNESADQKALCLRAMTLVFTHYHTHPSMTHPFSNLS
HLIELLENTFDVILRDRLLLFIRSLLQVKSNAKIFIDNRGIYRLLDLITLIHTHYTYGEE
GKLLPEWYYAVDVQQ


Frame C:
rnxqrek*vnn*fhfglqrikfvvnfwiefsqev*fnswihkrrhqknnc*kvnkvqpvq
nilnwvclpige*krslkpenswqrqplvlerklnq*dltigqcfsinsikiivmqi*fg
iiqlvks*enqwimkfvssnkswkplvenqshgmmkisrflihh*rrrslsvviislywl
malakvlnsliqvysltsygktss*mnqpikklfvyvq*hwysliiilihq*lihsqifh
i*sny*rihsmlsleivcyclfvvyfklnqmprfsliivvsidywi*lh*filitpmvkk
vnyyqngimlsmfn
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13271-1 (Contig-U13271-1Q)
/CSM_Contig/Contig-U13271-1Q.Seq.d
         (946 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13271-1 (Contig-U13271-1Q) /CSM_Contig/Conti...  1869  0.0
Contig-U12514-1 (Contig-U12514-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U14527-1 (Contig-U14527-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U09371-1 (Contig-U09371-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U12828-1 (Contig-U12828-1Q) /CSM_Contig/Conti...    34  0.26
Contig-U11875-1 (Contig-U11875-1Q) /CSM_Contig/Conti...    34  0.26
Contig-U11427-1 (Contig-U11427-1Q) /CSM_Contig/Conti...    34  0.26
Contig-U11140-1 (Contig-U11140-1Q) /CSM_Contig/Conti...    34  0.26
Contig-U10961-1 (Contig-U10961-1Q) /CSM_Contig/Conti...    34  0.26
Contig-U13958-1 (Contig-U13958-1Q) /CSM_Contig/Conti...    32  1.0

>Contig-U13271-1 (Contig-U13271-1Q) /CSM_Contig/Contig-U13271-1Q.Seq.d
          Length = 946

 Score = 1869 bits (943), Expect = 0.0
 Identities = 946/946 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagaaatnatcaaagagagaaatgagtaaacaattgatttcactttggactgcagagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttagaaatnatcaaagagagaaatgagtaaacaattgatttcactttggactgcagagaa 60

                                                                       
Query: 61  taaagtttgtcgtcaacttttggatagaattttcccaagaggtttagttcaattcttgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taaagtttgtcgtcaacttttggatagaattttcccaagaggtttagttcaattcttgga 120

                                                                       
Query: 121 ttcacaagaggaggcaccaaaagaacaattgttagaaagtaaacaaggtacaaccggtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcacaagaggaggcaccaaaagaacaattgttagaaagtaaacaaggtacaaccggtcc 180

                                                                       
Query: 181 aaaacatattaaattgggtgtgtttgccaattggagaatgaaaaagatcattaaaaccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaaacatattaaattgggtgtgtttgccaattggagaatgaaaaagatcattaaaaccag 240

                                                                       
Query: 241 agaactcatggcaaaggcaaccactcgtgttagaaaggaaactaaaccaatgagacctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agaactcatggcaaaggcaaccactcgtgttagaaaggaaactaaaccaatgagacctta 300

                                                                       
Query: 301 caattgggcaatgtttttccatcaattcaatcaagatcatcgtgatgcaaatctaatttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caattgggcaatgtttttccatcaattcaatcaagatcatcgtgatgcaaatctaatttg 360

                                                                       
Query: 361 gaatcatacaactcgtgaagagttgagagaatcaatggataatgaaattcgtctcttcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaatcatacaactcgtgaagagttgagagaatcaatggataatgaaattcgtctcttcca 420

                                                                       
Query: 421 acaagagttggaagccgctggtagagaaccaatcgcatggaatgatgaagatttcgaggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acaagagttggaagccgctggtagagaaccaatcgcatggaatgatgaagatttcgaggt 480

                                                                       
Query: 481 tccttatccatcattaaagaaggagatctctgtcggtggttattatatctctttattggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tccttatccatcattaaagaaggagatctctgtcggtggttattatatctctttattggt 540

                                                                       
Query: 541 tgatggcactagcaaaggtattaaactcattaatccaggtttattctttaacgagttatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgatggcactagcaaaggtattaaactcattaatccaggtttattctttaacgagttatg 600

                                                                       
Query: 601 gcaaaacttcctcttaaatgaatcagccgatcaaaaagctctttgtttacgtgcaatgac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gcaaaacttcctcttaaatgaatcagccgatcaaaaagctctttgtttacgtgcaatgac 660

                                                                       
Query: 661 attggtattcactcattatcatactcatccatcaatgactcatccattctcaaatctttc 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 attggtattcactcattatcatactcatccatcaatgactcatccattctcaaatctttc 720

                                                                       
Query: 721 acatttaatcgaattactagagaatacattcgatgttatccttagagatcgtttgttatt 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 acatttaatcgaattactagagaatacattcgatgttatccttagagatcgtttgttatt 780

                                                                       
Query: 781 gtttattcgtagtttacttcaagttaaatcaaatgccaagattttcattgataatcgtgg 840
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gtttattcgtagtttacttcaagttaaatcaaatgccaagattttcattgataatcgtgg 840

                                                                       
Query: 841 tatctatagattattggatttaattacattgattcatactcattacacctatggtgaaga 900
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tatctatagattattggatttaattacattgattcatactcattacacctatggtgaaga 900

                                                         
Query: 901 aggtaaactattaccagaatggtattatgctgtcgatgttcaacaa 946
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 aggtaaactattaccagaatggtattatgctgtcgatgttcaacaa 946


>Contig-U12514-1 (Contig-U12514-1Q) /CSM_Contig/Contig-U12514-1Q.Seq.d
          Length = 1323

 Score = 38.2 bits (19), Expect = 0.017
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 318  tccatcaattcaatcaaga 336
            |||||||||||||||||||
Sbjct: 1192 tccatcaattcaatcaaga 1210


>Contig-U14527-1 (Contig-U14527-1Q) /CSM_Contig/Contig-U14527-1Q.Seq.d
          Length = 2430

 Score = 36.2 bits (18), Expect = 0.067
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 180 caaaacatattaaattgg 197
           ||||||||||||||||||
Sbjct: 628 caaaacatattaaattgg 645


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8513
Number of Sequences: 6905
Number of extensions: 8513
Number of successful extensions: 756
Number of sequences better than 10.0: 78
length of query: 946
length of database: 5,674,871
effective HSP length: 16
effective length of query: 930
effective length of database: 5,564,391
effective search space: 5174883630
effective search space used: 5174883630
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 7
Homology vs DNA 
Query= Contig-U13271-1 (Contig-U13271-1Q) /CSM_Contig/Contig-U13271-1Q.Seq.d
         (946 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ426717) Dictyostelium discoideum cDNA clone:ddv60b03, 5' ...  1388   0.0    1
(BJ394703) Dictyostelium discoideum cDNA clone:dds36n05, 5' ...  1142   0.0    1
(ED460249) AUAC-aak86g06.b1 Ascaris suum whole genome shotgu...    50   0.15   1
(ET203675) HO-01G05 Hythe October 2005 metagenome 0-5cm mari...    48   0.61   1
(CT030185) Mouse DNA sequence from clone RP23-204L16 on chro...    46   2.4    1
(AC156572) Mus musculus BAC clone RP23-216C6 from chromosome...    46   2.4    1
(AC168211) Mus musculus chromosome 15 clone RP23-216E5 map 1...    46   2.4    1
(BX548074) Zebrafish DNA sequence from clone CH211-11F6 in l...    38   2.5    4
(CU695294) Brassica rapa subsp. pekinensis clone KBrH028G06,...    44   4.2    4
(AM430531) Vitis vinifera contig VV78X017125.5, whole genome...    34   5.1    2
(AM443714) Vitis vinifera contig VV78X039822.22, whole genom...    34   5.2    2
(AM437171) Vitis vinifera, whole genome shotgun sequence, co...    34   5.3    2
(AM427256) Vitis vinifera contig VV78X045480.2, whole genome...    34   5.3    2
(AL626764) Mouse DNA sequence from clone RP23-94L18 on chrom...    44   9.5    1
(AC220940) Pongo abelii BAC clone CH276-114C21 from chromoso...    44   9.5    1
(AC211346) Pongo abelii BAC clone CH276-340B19 from chromoso...    44   9.5    1
(AJ224559) Huperzia horizontalis chloroplast DNA, trnL intro...    44   9.5    1
(AJ224558) Huperzia phlegmaria chloroplast DNA, trnL intron ...    44   9.5    1
(AJ224557) Huperzia squarrosa chloroplast DNA, trnL intron a...    44   9.5    1
(AJ224555) Huperzia cf. phlegmaria chloroplast DNA, trnL int...    44   9.5    1
(AJ224554) Huperzia phlegmarioides chloroplast DNA, trnL int...    44   9.5    1
(AJ224552) Huperzia nummulariifolia chloroplast DNA, trnL in...    44   9.5    1
(AJ224550) Huperzia hippuris chloroplast DNA, trnL intron an...    44   9.5    1
(AJ224549) Huperzia sieboldii chloroplast DNA, trnL intron a...    44   9.5    1
(AJ224548) Huperzia fordii chloroplast DNA, trnL intron and ...    44   9.5    1
(AJ224547) Huperzia prolifera chloroplast DNA, trnL intron a...    44   9.5    1
(AC184812) Canis Familiaris chromosome 26, clone XX-52D2, co...    44   9.5    1
(AC069247) Homo sapiens chromosome 3 clone RP11-489O22 map 3...    44   9.5    1
(AC066585) Homo sapiens chromosome 3 clone RP11-24B16 map 3p...    44   9.5    1
(AC034194) Homo sapiens chromosome 3 clone RP11-669E3 map 3p...    44   9.5    1
(AC118536) Canis familiaris clone RP81-425G17, WORKING DRAFT...    44   9.5    1
(CU694600) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.5    1
(AZ808526) 2M0072B12F Mouse 10kb plasmid UUGC1M library Mus ...    44   9.5    1
(EJ502250) 1095403655013 Global-Ocean-Sampling_GS-28-01-01-1...    44   9.5    1
(EI840325) POTFR68TF Solanum tuberosum RHPOTKEY BAC ends Sol...    44   9.5    1
(CL362780) RPCI44_380P1.r RPCI-44 Sus scrofa genomic clone R...    44   9.5    1
(BH776318) fzmb013f005e12f0 fzmb filtered library Zea mays g...    44   9.5    1
(EH602546) FDR306-P00019-DEPE-R_E03 FDR306 Danio rerio cDNA ...    44   9.5    1
(EH585111) FDR306-P00019-DEPE-F_E03 FDR306 Danio rerio cDNA ...    44   9.5    1
(DT756160) EST1190009 Aquilegia cDNA library Aquilegia formo...    44   9.5    1
(DT730119) EST1163969 Aquilegia cDNA library Aquilegia formo...    44   9.5    1
(DR943180) EST1134719 Aquilegia cDNA library Aquilegia formo...    44   9.5    1

>(BJ426717) Dictyostelium discoideum cDNA clone:ddv60b03, 5' end,
           single read.
          Length = 703

 Score = 1388 bits (700), Expect = 0.0
 Identities = 703/703 (100%)
 Strand = Plus / Plus


Query: 1   ttagaaatnatcaaagagagaaatgagtaaacaattgatttcactttggactgcagagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttagaaatnatcaaagagagaaatgagtaaacaattgatttcactttggactgcagagaa 60


Query: 61  taaagtttgtcgtcaacttttggatagaattttcccaagaggtttagttcaattcttgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taaagtttgtcgtcaacttttggatagaattttcccaagaggtttagttcaattcttgga 120


Query: 121 ttcacaagaggaggcaccaaaagaacaattgttagaaagtaaacaaggtacaaccggtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcacaagaggaggcaccaaaagaacaattgttagaaagtaaacaaggtacaaccggtcc 180


Query: 181 aaaacatattaaattgggtgtgtttgccaattggagaatgaaaaagatcattaaaaccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaaacatattaaattgggtgtgtttgccaattggagaatgaaaaagatcattaaaaccag 240


Query: 241 agaactcatggcaaaggcaaccactcgtgttagaaaggaaactaaaccaatgagacctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agaactcatggcaaaggcaaccactcgtgttagaaaggaaactaaaccaatgagacctta 300


Query: 301 caattgggcaatgtttttccatcaattcaatcaagatcatcgtgatgcaaatctaatttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caattgggcaatgtttttccatcaattcaatcaagatcatcgtgatgcaaatctaatttg 360


Query: 361 gaatcatacaactcgtgaagagttgagagaatcaatggataatgaaattcgtctcttcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaatcatacaactcgtgaagagttgagagaatcaatggataatgaaattcgtctcttcca 420


Query: 421 acaagagttggaagccgctggtagagaaccaatcgcatggaatgatgaagatttcgaggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acaagagttggaagccgctggtagagaaccaatcgcatggaatgatgaagatttcgaggt 480


Query: 481 tccttatccatcattaaagaaggagatctctgtcggtggttattatatctctttattggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tccttatccatcattaaagaaggagatctctgtcggtggttattatatctctttattggt 540


Query: 541 tgatggcactagcaaaggtattaaactcattaatccaggtttattctttaacgagttatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgatggcactagcaaaggtattaaactcattaatccaggtttattctttaacgagttatg 600


Query: 601 gcaaaacttcctcttaaatgaatcagccgatcaaaaagctctttgtttacgtgcaatgac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gcaaaacttcctcttaaatgaatcagccgatcaaaaagctctttgtttacgtgcaatgac 660


Query: 661 attggtattcactcattatcatactcatccatcaatgactcat 703
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 attggtattcactcattatcatactcatccatcaatgactcat 703

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,014,135,824
Number of extensions: 55678372
Number of successful extensions: 4130635
Number of sequences better than 10.0: 42
Length of query: 946
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 922
Effective length of database: 97,308,875,965
Effective search space: 89718783639730
Effective search space used: 89718783639730
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 6
Homology vs Protein 
Query= Contig-U13271-1 (Contig-U13271-1Q) /CSM_Contig/Contig-U13271-1Q.Seq.d
         (946 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY779857_1(AY779857|pid:none) Homo sapiens DnaJ domain-containin...   184   5e-45
BC151246_1(BC151246|pid:none) Homo sapiens DnaJ (Hsp40) homolog,...   184   5e-45
AF372457_1(AF372457|pid:none) Caenorhabditis elegans endocytosis...   179   2e-43
Z75536_4(Z75536|pid:none) Caenorhabditis elegans Cosmid F18C12, ...   179   2e-43
AC074258_11(AC074258|pid:none) Trypanosoma brucei chromosome 6 c...   171   4e-41
CT005267_239(CT005267|pid:none) Leishmania major strain Friedlin...   169   1e-40
AM494967_216(AM494967|pid:none) Leishmania braziliensis chromoso...   167   4e-40
AY369172_1(AY369172|pid:none) Homo sapiens RME8 (RME8) mRNA, par...   160   5e-38
T21087(T21087)hypothetical protein F18C12.2b - Caenorhabditis el...   158   3e-37
T21086(T21086)hypothetical protein F18C12.2a - Caenorhabditis el...   158   3e-37
AC060755_25(AC060755|pid:none) Oryza sativa chromosome 10 BAC OS...    78   5e-13
AK125330_1(AK125330|pid:none) Homo sapiens cDNA FLJ43340 fis, cl...    64   6e-09
AK023168_1(AK023168|pid:none) Homo sapiens cDNA FLJ13106 fis, cl...    38   0.44
T00361(T00361)hypothetical protein KIAA0678 - human (fragment)         38   0.44
BC009630_1(BC009630|pid:none) Homo sapiens DnaJ (Hsp40) homolog,...    38   0.44
CP000916_1919(CP000916|pid:none) Thermotoga neapolitana DSM 4359...    37   0.76
CR382133_379(CR382133|pid:none) Debaryomyces hansenii strain CBS...    36   1.7
AE016879_4728(AE016879|pid:none) Bacillus anthracis str. Ames, c...    36   2.2
AJ428998_1(AJ428998|pid:none) Human immunodeficiency virus type ...    35   2.9
CP001186_4889(CP001186|pid:none) Bacillus cereus G9842, complete...    34   6.4
AB093258_1(AB093258|pid:none) Mus musculus mRNA for mKIAA0678 pr...    34   6.4
AK142362_1(AK142362|pid:none) Mus musculus 13 days embryo lung c...    34   6.4
CU179680_270(CU179680|pid:none) Mycoplasma agalactiae PG2 chromo...    34   8.4

>AY779857_1(AY779857|pid:none) Homo sapiens DnaJ domain-containing
            protein RME-8 mRNA, complete cds.
          Length = 2243

 Score =  184 bits (466), Expect = 5e-45
 Identities = 108/324 (33%), Positives = 169/324 (52%), Gaps = 33/324 (10%)
 Frame = +2

Query: 11   SKREMSKQLISLWTAENKVCRQLLDRIFPRGLVQFLDSQEEAPKE--------------- 145
            + R++S+ L+ LWTA+N     LL RI P GL+ +L+S +  P++
Sbjct: 629  TNRQLSRHLVGLWTADNATATNLLKRILPPGLLAYLESSDLVPEKDADRMHVRDNVKIAM 688

Query: 146  ------------QLLESKQGTTGPKHIKLGV---FANWRMKKIIKTRELMAKATTRVRKE 280
                        Q L  K      K  K  V     +WR +  I  +E + +    +RK
Sbjct: 689  DQYGKFNKVPEWQRLAGKAAKEVEKFAKEKVDLVLMHWRDRMGIAQKENINQKPVVLRKR 748

Query: 281  TKPMR-PYNWAMFFHQFNQDHRDANLIWNHTTREELRESMDNEIRLFQQELEAAGREPIA 457
             + ++   NW +F+++F QDH  +NLIWN  TREEL++++++E+R F  + E      I+
Sbjct: 749  RQRIKIEANWDLFYYRFGQDHARSNLIWNFKTREELKDTLESEMRAFNIDRELGSANVIS 808

Query: 458  WNDEDFEVPYPSLKKEISVGGYYISLLV--DGTSKGIKLINPGLFFNELWQNFLLNESAD 631
            WN  +FEV Y  L +EI +G YY+ LL+  D   +   +     FFNEL+  FLL    +
Sbjct: 809  WNHHEFEVKYECLAEEIKIGDYYLRLLLEEDENEESGSIKRSYEFFNELYHRFLLTPKVN 868

Query: 632  QKALCLRAMTLVFTHYHTHPSMTHPFSNLSHLIELLENTFDVILRDRLLLFIRSLLQVKS 811
             K LCL+A+ +V+   H       PF++  ++I +LE   D + RDRL+LF+  L+  K
Sbjct: 869  MKCLCLQALAIVYGRCHEE---IGPFTDTRYIIGMLERCTDKLERDRLILFLNKLILNKK 925

Query: 812  NAKIFIDNRGIYRLLDLITLIHTH 883
            N K  +D+ GI  L+DL+TL H H
Sbjct: 926  NVKDLMDSNGIRILVDLLTLAHLH 949

 Score = 38.1 bits (87), Expect = 0.44
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +2

Query: 320  HQFNQDHRDANLIWNHTTREEL----RESMDNEIRLFQQELEAAGREPIAWNDEDFEVPY 487
            H F   H +  LIWN  +R+++    RE M    +  Q   EA  + P     EDF V +
Sbjct: 1917 HIFEGTHENPELIWNDNSRDKVSTTVREMMLEHFKNQQDNPEANWKLP-----EDFAVVF 1971

Query: 488  PSLKKEISVGGYYISLLV 541
               + E++VGG ++ + +
Sbjct: 1972 GEAEGELAVGGVFLRIFI 1989

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,619,794,888
Number of extensions: 33588160
Number of successful extensions: 96470
Number of sequences better than 10.0: 23
Number of HSP's gapped: 96430
Number of HSP's successfully gapped: 29
Length of query: 315
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 187
Effective length of database: 636,901,312
Effective search space: 119100545344
Effective search space used: 119100545344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.86  gvh: 0.45  alm: 0.40  top: 0.47  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for Contig-U13271-1 is mit
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0