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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U00572-1
Contig ID Contig-U00572-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U00572-1 (Contig-U00572-1Q) /CSM_Contig/Contig-U00572-1Q.Seq.d
TGGATAAATATTTTTTTCATTTAATTTTTTAAATCTTGTGTTTAAAAATA
AATAAATATATATTTATACATTATTGAAAACAGTGTTTTGAAATTATATT
TTAATTATAAAAAAATATAAAAATAGAATGAATAAATGTAATATATTATT
ATTATTTTTATTTATATTTTATCAATTTATAAAAATAATAAAATCAAGTT
ATGAATGTGAATTATTAAATACAGATTTATGTTTATCAGCATATCCAAAT
TGTTTACCATTATTTTTAAATAGCTGTTGCCCTGGTCAAATGGGTATTTG
TTCAACAATGGATAGTGCAGTTAAATATGGAGATGAAAAATCAAAAAATG
TAACAGGTTGTCTTAGACACATTCAATCAGGTGTTGTTTATGAATTATAT
GGTCCAATAGATAGTATGGTTGGTTTTGAATTTTTTCCAACTCCAAATAA
AACTTGCGAAGATTTAGGATGTAAAAATAAAGGATTAGGAATGTTTAATT
GAACCAATTGAAAAATGTGAAACAATTTTAAAATCACCATGTTGGTGTTT
CTGAACCAAAGTGTAATCAAAATAGTAAGCT----------TACCTATGG
TAATGGTAATTGTGATTCATCATGTCCACCAGAATTTAATTGTAGATTCA
TTGGAGATGTACAACAATGTTTACCGTCGAGATGTGGTTTAGTTGAATGT
CCACAAGGTACAGAGTGTAAACCATTGGATGGATTAGATATTGTATCATG
TTTTAAAACAATTTTACCAGTACCAAGTAATCAGAGTGTAACATGTGACC
AAATCAAATGCCCAGATCAATTCTATTGTGGCAAAGGTATTTTCTCAGAT
GCAGATTGTATACCATTGAATATTGACTTAATAGGTCGTGAATTTGATTG
TAATCTTTGTCCCACCGATTGGAAATGTGATAAATTTGGGTGGGGTGGTT
TATGTATTGAATGGAAACCATTTAGTCCTGGTGATGGTGAGCCTTGTTTA
GGTGGGGTATGTTTATTCAATCAATATTGTAATACTACAAGTCAACAATG
TGAATTTCCAAAATGTGATGACGCAACTTGCCATAAAGGAATGAGTTGTA
TTCAATATCAAGTATCTCATCCAAGAGTTTGTGCAACTACAAATGTAATA
CCTTTTACTTCATTACCTGATTCATTAGTACCATATACAAAATAATAAAA
AAAAATAATAAAAAATAAATAAAAAAAAAACTATAATTATTTATTATATT
AAAAAAAAAAAAAAAAAAAAAA
Gap gap included
Contig length 1262
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5365290
End point 5366551
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 4
Link to clone list U00572
List of clone(s) 

est1=AFK717F,1,582
est2=SSM152F,166,375
est3=AFK717Z,583,1226
est4=SSM152Z,638,1264
Translated Amino Acid sequence 
g*iffsfnflnlvfknk*iyiytllktvf*nyiliikkyknrmnkcnilllflfifyqfi
kiikssyecellntdlclsaypnclplflnsccpgqmgicstmdsavkygdeksknvtgc
lrhiqsgvvyelygpidsmvgfeffptpnktcedlgcknkglgmfn*tn*km*NNFKITM
LVFLNQSVIKIVS---

---TYGNGNCDSSCPPEFNCRFIGDVQQCLPSRCGLVECPQGTECKPLDGLDIVSCFKTI
LPVPSNQSVTCDQIKCPDQFYCGKGIFSDADCIPLNIDLIGREFDCNLCPTDWKCDKFGW
GGLCIEWKPFSPGDGEPCLGGVCLFNQYCNTTSQQCEFPKCDDATCHKGMSCIQYQVSHP
RVCATTNVIPFTSLPDSLVPYTK**kkiiknk*kknynylly*kkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
winiffi*ffkscv*k*iniylyiiensvlklyfnykki*k*ne*m*yiiiifiyilsiy
knnkikl*m*iikyrfmfisisklftiifk*llpwsngylfnng*cs*iwr*kikkcnrl
s*thsirccl*iiwsnr*ygwf*ifsnsk*nlrrfrm*k*rirnv*lnqlknvkqf*nhh
vgvsepkcnqnsk---

---ylw*w*l*fimstri*l*ihwrcttmftvemwfs*mstryrv*tigwirycimf*nn
ftstk*secnm*pnqmprsillwqryflrcrlytiey*lnrs*i*l*slshrlem**iwv
gwfmy*meti*sw*w*alfrwgmfiqsil*yykstm*iskm**rnlp*rnelysississ
kslcnykcntfyfit*fistiykiikknnkk*ikkkl*lfiilkkkkkkk

Frame B:
g*iffsfnflnlvfknk*iyiytllktvf*nyiliikkyknrmnkcnilllflfifyqfi
kiikssyecellntdlclsaypnclplflnsccpgqmgicstmdsavkygdeksknvtgc
lrhiqsgvvyelygpidsmvgfeffptpnktcedlgcknkglgmfn*tn*km*NNFKITM
LVFLNQSVIKIVS---

---TYGNGNCDSSCPPEFNCRFIGDVQQCLPSRCGLVECPQGTECKPLDGLDIVSCFKTI
LPVPSNQSVTCDQIKCPDQFYCGKGIFSDADCIPLNIDLIGREFDCNLCPTDWKCDKFGW
GGLCIEWKPFSPGDGEPCLGGVCLFNQYCNTTSQQCEFPKCDDATCHKGMSCIQYQVSHP
RVCATTNVIPFTSLPDSLVPYTK**kkiiknk*kknynylly*kkkkkk

Frame C:
dkyffhlif*ilclkinkyifihy*kqcfeiif*l*knikie*inviyyyyfylyfinl*
k**nqvmnvny*iqiyvyqhiqivyhyf*iavalvkwvfvqqwivqlnmemknqkm*qvv
ldtfnqvlfmnymvq*ivwlvlnffqlqiklaki*dvkikd*ecliepiekcetilkspc
wcf*tkv*sk**a---

---pmvmvivihhvhqnlivdslemynnvyrrdvv*lnvhkvqsvnhwmd*ilyhvlkqf
yqyqvirv*hvtksnaqinsivakvfsqmqivyh*ilt**vvnlivifvppignvinlgg
vvyvlngnhlvlvmvslv*vgyvysinivilqvnnvnfqnvmtqlaike*vvfnikyliq
efvqlqm*ylllhylih*yhiqnnkkk**kinkkktiiiyyikkkkkkk
own update 2004. 6.21
Homology vs CSM-cDNA 
Query= Contig-U00572-1 (Contig-U00572-1Q)
/CSM_Contig/Contig-U00572-1Q.Seq.d
         (1272 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U00572-1 (Contig-U00572-1Q) /CSM_Contig/Conti...  1606  0.0
Contig-U16351-1 (Contig-U16351-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U14618-1 (Contig-U14618-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U06612-1 (Contig-U06612-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U06283-1 (Contig-U06283-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U05217-1 (Contig-U05217-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U02087-1 (Contig-U02087-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U16509-1 (Contig-U16509-1Q) /CSM_Contig/Conti...    38  0.033
Contig-U16275-1 (Contig-U16275-1Q) /CSM_Contig/Conti...    38  0.033
Contig-U15698-1 (Contig-U15698-1Q) /CSM_Contig/Conti...    38  0.033

>Contig-U00572-1 (Contig-U00572-1Q) /CSM_Contig/Contig-U00572-1Q.Seq.d
          Length = 1272

 Score = 1606 bits (810), Expect = 0.0
 Identities = 840/840 (100%)
 Strand = Plus / Plus

                                                                        
Query: 349  tgtaacaggttgtcttagacacattcaatcaggtgttgtttatgaattatatggtccaat 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349  tgtaacaggttgtcttagacacattcaatcaggtgttgtttatgaattatatggtccaat 408

                                                                        
Query: 409  agatagtatggttggttttgaattttttccaactccaaataaaacttgcgaagatttagg 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409  agatagtatggttggttttgaattttttccaactccaaataaaacttgcgaagatttagg 468

                                                                        
Query: 469  atgtaaaaataaaggattaggaatgtttaattgaaccaattgaaaaatgtgaaacaattt 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469  atgtaaaaataaaggattaggaatgtttaattgaaccaattgaaaaatgtgaaacaattt 528

                                                                        
Query: 529  taaaatcaccatgttggtgtttctgaaccaaagtgtaatcaaaatagtaagctnnnnnnn 588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529  taaaatcaccatgttggtgtttctgaaccaaagtgtaatcaaaatagtaagctnnnnnnn 588

                                                                        
Query: 589  nnntacctatggtaatggtaattgtgattcatcatgtccaccagaatttaattgtagatt 648
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589  nnntacctatggtaatggtaattgtgattcatcatgtccaccagaatttaattgtagatt 648

                                                                        
Query: 649  cattggagatgtacaacaatgtttaccgtcgagatgtggtttagttgaatgtccacaagg 708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649  cattggagatgtacaacaatgtttaccgtcgagatgtggtttagttgaatgtccacaagg 708

                                                                        
Query: 709  tacagagtgtaaaccattggatggattagatattgtatcatgttttaaaacaattttacc 768
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709  tacagagtgtaaaccattggatggattagatattgtatcatgttttaaaacaattttacc 768

                                                                        
Query: 769  agtaccaagtaatcagagtgtaacatgtgaccaaatcaaatgcccagatcaattctattg 828
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769  agtaccaagtaatcagagtgtaacatgtgaccaaatcaaatgcccagatcaattctattg 828

                                                                        
Query: 829  tggcaaaggtattttctcagatgcagattgtataccattgaatattgacttaataggtcg 888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829  tggcaaaggtattttctcagatgcagattgtataccattgaatattgacttaataggtcg 888

                                                                        
Query: 889  tgaatttgattgtaatctttgtcccaccgattggaaatgtgataaatttgggtggggtgg 948
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889  tgaatttgattgtaatctttgtcccaccgattggaaatgtgataaatttgggtggggtgg 948

                                                                        
Query: 949  tttatgtattgaatggaaaccatttagtcctggtgatggtgagccttgtttaggtggggt 1008
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949  tttatgtattgaatggaaaccatttagtcctggtgatggtgagccttgtttaggtggggt 1008

                                                                        
Query: 1009 atgtttattcaatcaatattgtaatactacaagtcaacaatgtgaatttccaaaatgtga 1068
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 atgtttattcaatcaatattgtaatactacaagtcaacaatgtgaatttccaaaatgtga 1068

                                                                        
Query: 1069 tgacgcaacttgccataaaggaatgagttgtattcaatatcaagtatctcatccaagagt 1128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 tgacgcaacttgccataaaggaatgagttgtattcaatatcaagtatctcatccaagagt 1128

                                                                        
Query: 1129 ttgtgcaactacaaatgtaataccttttacttcattacctgattcattagtaccatatac 1188
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1129 ttgtgcaactacaaatgtaataccttttacttcattacctgattcattagtaccatatac 1188


 Score =  307 bits (155), Expect = 2e-83
 Identities = 155/155 (100%)
 Strand = Plus / Plus

                                                                       
Query: 181 aaaaataataaaatcaagttatgaatgtgaattattaaatacagatttatgtttatcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaaaataataaaatcaagttatgaatgtgaattattaaatacagatttatgtttatcagc 240

                                                                       
Query: 241 atatccaaattgtttaccattatttttaaatagctgttgccctggtcaaatgggtatttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atatccaaattgtttaccattatttttaaatagctgttgccctggtcaaatgggtatttg 300

                                              
Query: 301 ttcaacaatggatagtgcagttaaatatggagatg 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 301 ttcaacaatggatagtgcagttaaatatggagatg 335


 Score =  125 bits (63), Expect = 2e-28
 Identities = 63/63 (100%)
 Strand = Plus / Plus

                                                                      
Query: 31 aaatcttgtgtttaaaaataaataaatatatatttatacattattgaaaacagtgttttg 90
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31 aaatcttgtgtttaaaaataaataaatatatatttatacattattgaaaacagtgttttg 90

             
Query: 91 aaa 93
          |||
Sbjct: 91 aaa 93


 Score = 40.1 bits (20), Expect = 0.008
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1231 ctataattatttattatatt 1250
            ||||||||||||||||||||
Sbjct: 1231 ctataattatttattatatt 1250


 Score = 32.2 bits (16), Expect = 2.0
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                          
Query: 52 ataaatatatatttat 67
          ||||||||||||||||
Sbjct: 67 ataaatatatatttat 52


>Contig-U16351-1 (Contig-U16351-1Q) /CSM_Contig/Contig-U16351-1Q.Seq.d
          Length = 2623

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 36  ttgtgtttaaaaataaataaata 58
           |||||||||||||||||||||||
Sbjct: 579 ttgtgtttaaaaataaataaata 557


>Contig-U14618-1 (Contig-U14618-1Q) /CSM_Contig/Contig-U14618-1Q.Seq.d
          Length = 215

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 48 ataaataaatatatatttata 68
          |||||||||||||||||||||
Sbjct: 54 ataaataaatatatatttata 34


 Score = 32.2 bits (16), Expect = 2.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                          
Query: 52 ataaatatatatttat 67
          ||||||||||||||||
Sbjct: 35 ataaatatatatttat 50


  Database: CSM
    Posted date:  Jun 21, 2004 12:56 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 32,771
Number of Sequences: 8402
Number of extensions: 32771
Number of successful extensions: 6322
Number of sequences better than 10.0: 706
length of query: 1272
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1256
effective length of database: 7,941,110
effective search space: 9974034160
effective search space used: 9974034160
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.17
Homology vs DNA 
Query= Contig-U00572-1 (Contig-U00572-1Q) /CSM_Contig/Contig-U00572-1Q.Seq.d
         (1272 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ343088) Dictyostelium discoideum cDNA clone:dda22b05, 3' ...  1134   0.0    1
(AU038927) Dictyostelium discoideum slug cDNA, clone SSM152.     1074   0.0    1
(BJ327852) Dictyostelium discoideum cDNA clone:dda22b05, 5' ...   462   0.0    2
(AU074814) Dictyostelium discoideum slug cDNA, clone SSM152.      307   7e-89  2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    82   6e-11  1
(AC129158) Rattus norvegicus clone CH230-220P5, *** SEQUENCI...    52   0.054  1
(AC108325) Rattus norvegicus clone CH230-302G14, *** SEQUENC...    52   0.054  1
(AU060768) Dictyostelium discoideum slug cDNA, clone SLB419.       36   0.089  3
(CS374610) Sequence 713 from Patent WO2006034879.                  40   0.45   2
(U29537) Caenorhabditis elegans cosmid F28B12, complete sequ...    46   0.45   2
(EY873508) CL06-C4-501-015-F04-CT.F Rangpur lime root, plant...    48   0.84   1
(EY873100) CL06-C4-501-005-H08-CT.F Rangpur lime root, plant...    48   0.84   1
(DD209286) test.                                                   38   1.6    2
(AX826123) Sequence 375 from Patent WO03072821.                    38   1.6    2
(AX822483) Sequence 375 from Patent EP1340818.                     38   1.6    2
(CS468856) Sequence 47 from Patent EP1748080.                      40   1.7    3
(CS419333) Sequence 47 from Patent WO2006094836.                   40   1.7    3
(AC135021) Rattus norvegicus clone CH230-520D1, *** SEQUENCI...    42   2.9    2
(CU861899) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.2    4
(AL844887) Zebrafish DNA sequence from clone DKEY-66C10.           46   3.3    1
(AF283982) Caenorhabditis elegans transcription enhancer fac...    46   3.3    1
(AC114496) Homo sapiens chromosome 1 clone RP11-504B1, compl...    46   3.3    1
(AC109020) Rattus norvegicus clone CH230-244E14, WORKING DRA...    46   3.3    1
(CU928890) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.3    1
(CU571348) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.3    1
(CU487210) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.3    1
(CU104751) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   3.3    1
(AC172088) Bos taurus clone CH240-232I22, WORKING DRAFT SEQU...    46   3.3    1
(AC165881) Bos taurus clone CH240-173D17, WORKING DRAFT SEQU...    46   3.3    1
(DH170626) Oryzias latipes Fosmid clone:GOLWFno445_l17, reve...    46   3.3    1
(CT908760) Phaeodactylum tricornutum 5-PRIME EST from clone ...    40   3.7    2
(CT920853) Phaeodactylum tricornutum 3-PRIME EST from clone ...    40   4.1    2
(AX344819) Sequence 244 from Patent WO0200927.                     36   4.2    4
(FB744742) Sequence 65 from Patent WO2008011620.                   38   5.6    7
(FB332203) Sequence 10 from Patent WO2007115213.                   38   5.6    7
(CS448326) Sequence 10 from Patent WO2006117381.                   38   5.6    7
(GM987246) Sequence 10 from Patent EP2009115.                      38   5.6    7
(GM841799) Sequence 122 from Patent WO2008122447.                  38   5.6    7
(FB676006) Sequence 9 from Patent WO2007118704.                    38   5.8    7
(AC021732) Homo sapiens chromosome 11 clone RP11-719A18 map ...    34   6.2    2
(AC180857) Strongylocentrotus purpuratus clone R3-3069E16, W...    32   6.2    2
(AC176887) Strongylocentrotus purpuratus clone R3-31J10, WOR...    32   6.2    2
(AP001988) Homo sapiens genomic DNA, chromosome 11 clone:RP1...    34   6.3    2
(AQ886821) HS_5545_B1_A01_SP6E RPCI-11 Human Male BAC Librar...    34   8.5    2
(DJ357786) METHODS AND NUCLEIC ACIDS FOR THE ANALYSIS OF GEN...    38   9.4    2
(CS113505) Sequence 263 from Patent WO2005054517.                  38   9.4    2

>(BJ343088) Dictyostelium discoideum cDNA clone:dda22b05, 3' end,
            single read.
          Length = 644

 Score = 1134 bits (572), Expect = 0.0
 Identities = 589/597 (98%)
 Strand = Plus / Minus


Query: 592  tacctatggtaatggtaattgtgattcatcatgtccaccagaatttaattgtagattcat 651
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644  tacctatggtaatggtaattgtgattcatcatgtccaccagaatttaattgtagattcat 585


Query: 652  tggagatgtacaacaatgtttaccgtcgagatgtggtttagttgaatgtccacaaggtac 711
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 584  tggagatgtacaacaatgtttaccgtcganatgtggtttagttgaatgtccacaaggtac 525


Query: 712  agagtgtaaaccattggatggattagatattgtatcatgttttaaaacaattttaccagt 771
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524  anagtgtaaaccattggatggattagatattgtatcatgttttaaaacaattttaccagt 465


Query: 772  accaagtaatcagagtgtaacatgtgaccaaatcaaatgcccagatcaattctattgtgg 831
            |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 464  accaagtaatcanagtgtaacatgtgaccaaatcaaatgcccagatcaattntattgtgg 405


Query: 832  caaaggtattttctcagatgcagattgtataccattgaatattgacttaataggtcgtga 891
            |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404  caaaggtattttntcanatgcagattgtataccattgaatattgacttaataggtcgtga 345


Query: 892  atttgattgtaatctttgtcccaccgattggaaatgtgataaatttgggtggggtggttt 951
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344  atttgattgtaatctttgtcccaccgattggaaatgtgataaatttgggtggggtggttt 285


Query: 952  atgtattgaatggaaaccatttagtcctggtgatggtgagccttgtttaggtggggtatg 1011
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 284  atgtattgaatggaaaccatttagtcctggtgatggtgagccttgtttaggtggtgtatg 225


Query: 1012 tttattcaatcaatattgtaatactacaagtcaacaatgtgaatttccaaaatgtgatga 1071
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224  tttattcaatcaatattgtaatactacaagtcaacaatgtgaatttccaaaatgtgatga 165


Query: 1072 cgcaacttgccataaaggaatgagttgtattcaatatcaagtatctcatccaagagtttg 1131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164  cgcaacttgccataaaggaatgagttgtattcaatatcaagtatctcatccaagagtttg 105


Query: 1132 tgcaactacaaatgtaataccttttacttcattacctgattcattagtaccatatac 1188
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 104  tgcaactacaaatgtaataccttttacttcattacctgattcattagnaccatatac 48

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,260,169,109
Number of extensions: 76987818
Number of successful extensions: 6213602
Number of sequences better than 10.0: 46
Length of query: 1272
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1248
Effective length of database: 99,340,224,878
Effective search space: 123976600647744
Effective search space used: 123976600647744
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.13
Homology vs Protein 
Query= Contig-U00572-1 (Contig-U00572-1Q) /CSM_Contig/Contig-U00572-1Q.Seq.d
         (1272 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117076_50(AC117076|pid:none) Dictyostelium discoideum chromoso...   277   7e-73
AC117076_49(AC117076|pid:none) Dictyostelium discoideum chromoso...   269   1e-70
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa...    51   8e-05
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    50   1e-04
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    50   2e-04
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    49   5e-04
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    47   0.001
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        47   0.001
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    47   0.001
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso...    47   0.002
A55035(A55035;S45034) cysteine-rich protein CRP1 - earthworm (En...    46   0.003
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    44   0.012
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg...    44   0.016
JS0209(JS0209) antistasin precursor - Mexican leech  &M24423_1(M...    41   0.080
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...    41   0.080
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...    41   0.080
S13904(S13904)antistasin - Mexican leech                               40   0.14
CP001131_1246(CP001131|pid:none) Anaeromyxobacter sp. K, complet...    40   0.18
(P15358) RecName: Full=Antistasin;          Short=ATS; AltName: ...    40   0.18
A28806(A28806)antistasin A - Mexican leech                             40   0.23
CP000251_2584(CP000251|pid:none) Anaeromyxobacter dehalogenans 2...    40   0.23
AY497019_5(AY497019|pid:none) Mus musculus strain C57BL/6J chrom...    39   0.40
(Q61483) RecName: Full=Delta-like protein 1; AltName: Full=Droso...    39   0.40
AF375477_1(AF375477|pid:none) Danio rerio granulin-A precursor, ...    38   0.89
B28806(B28806)antistasin B - Mexican leech                             37   1.2
AM055943_18(AM055943|pid:none) Toxoplasma gondii RH, genomic DNA...    37   1.2
(P15312) RecName: Full=Root-specific lectin; Flags: Precursor;  ...    37   1.2
U20787_1(U20787|pid:none) Haementeria ghilianii anticoagulant-an...    37   1.5
(P97677) RecName: Full=Delta-like protein 1; AltName: Full=Droso...    37   1.5
CP000113_6723(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    37   1.5
(P16242) RecName: Full=Ghilanten;  &A34816(A34816;A60500;A60953)       37   1.5
AB209157_1(AB209157|pid:none) Homo sapiens mRNA for ADAM15 isofo...    37   2.0
AL451085_35(AL451085|pid:none) Human DNA sequence from clone RP1...    37   2.0
AF314227_11(AF314227|pid:none) Homo sapiens FLJ32785 (FLJ32785) ...    37   2.0
AY518542_1(AY518542|pid:none) Homo sapiens ADAM-15 precursor mRN...    37   2.0
AF314227_10(AF314227|pid:none) Homo sapiens FLJ32785 (FLJ32785) ...    37   2.0
G02390(G02390;PC4263) disintegrin-like metalloproteinase MDC15 (...    37   2.0
AF314227_8(AF314227|pid:none) Homo sapiens FLJ32785 (FLJ32785) g...    37   2.0
AX235004_1(AX235004|pid:none) Sequence 7 from Patent WO0162905. ...    37   2.0
AF314227_9(AF314227|pid:none) Homo sapiens FLJ32785 (FLJ32785) g...    37   2.0
U41767_1(U41767|pid:none) Human metargidin precursor mRNA, compl...    37   2.0
EU176173_1(EU176173|pid:none) Synthetic construct Homo sapiens c...    37   2.0
AF314227_4(AF314227|pid:none) Homo sapiens FLJ32785 (FLJ32785) g...    37   2.0
AF314227_2(AF314227|pid:none) Homo sapiens FLJ32785 (FLJ32785) g...    37   2.0
AY892644_1(AY892644|pid:none) Synthetic construct Homo sapiens c...    37   2.0
AL451085_36(AL451085|pid:none) Human DNA sequence from clone RP1...    37   2.0
AF314227_7(AF314227|pid:none) Homo sapiens FLJ32785 (FLJ32785) g...    37   2.0
(Q9AYP9) RecName: Full=Lectin-C; AltName: Full=PL-C; Flags: Prec...    36   2.6
U57753_1(U57753|pid:none) Strongylocentrotus purpuratus SFE1 mRN...    36   2.6
(Q01MB6) RecName: Full=Lectin; AltName: Full=Agglutinin; Contain...    36   3.4
AL662990_8(AL662990|pid:none) Oryza sativa genomic DNA, chromoso...    36   3.4
Z69717_3(Z69717|pid:none) Caenorhabditis elegans Cosmid E01G6, c...    36   3.4
T20406(T20406)hypothetical protein E01G6.1 - Caenorhabditis eleg...    36   3.4
Z83743_1(Z83743|pid:none) G.duodenalis gene encoding variant-spe...    36   3.4
AB121210_1(AB121210|pid:none) Marsupenaeus japonicus mjTSPb mRNA...    36   3.4
AB121211_1(AB121211|pid:none) Marsupenaeus japonicus mjTSPc mRNA...    36   3.4
(Q0JF21) RecName: Full=Lectin; AltName: Full=Agglutinin; Contain...    36   3.4
CR855052_1(CR855052|pid:none) Oryza sativa genomic DNA, chromoso...    36   3.4
AF091889_1(AF091889|pid:none) Homo sapiens Usher syndrome type I...    35   4.4
AB177798_1(AB177798|pid:none) Homo sapiens FBN3 gene for fibrill...    35   4.4
AB177799_1(AB177799|pid:none) Homo sapiens FBN3 gene for fibrill...    35   4.4
CT025750_1(CT025750|pid:none) Zebrafish DNA sequence from clone ...    35   4.4
(Q75N90) RecName: Full=Fibrillin-3; Flags: Precursor;  &AY165863...    35   4.4
AL590997_33(AL590997|pid:none) Mouse DNA sequence from clone RP2...    35   4.4
CP001576_260(CP001576|pid:none) Micromonas sp. RCC299 chromosome...    35   4.4
AF378038_1(AF378038|pid:none) Gossypium hirsutum isolate Cotton8...    35   5.8
AB384635_1(AB384635|pid:none) Synthetic construct DNA, clone: pF...    35   5.8
CP001336_1355(CP001336|pid:none) Desulfitobacterium hafniense DC...    35   5.8
T25768(T25768)hypothetical protein F46F11.7 - Caenorhabditis ele...    35   5.8
U88173_9(U88173|pid:none) Caenorhabditis elegans cosmid F46F11, ...    35   5.8
BT057624_1(BT057624|pid:none) Salmo salar clone ssal-eve-538-202...    35   5.8
(P83790) RecName: Full=Lectin-D2; AltName: Full=PL-D2;                 35   7.5
AL022270_3(AL022270|pid:none) Caenorhabditis elegans Cosmid C26G...    35   7.5
(Q96CW9) RecName: Full=Netrin-G2; AltName: Full=Laminet-2; Flags...    35   7.5
AB058760_1(AB058760|pid:none) Homo sapiens mRNA for KIAA1857 pro...    35   7.5
AL159997_2(AL159997|pid:none) Human DNA sequence from clone RP11...    35   7.5
AF140681_1(AF140681|pid:none) Oryza sativa subsp. indica lectin ...    35   7.5
AL159997_1(AL159997|pid:none) Human DNA sequence from clone RP11...    35   7.5
BC131611_1(BC131611|pid:none) Homo sapiens keratin associated pr...    34   9.8
BC047187_1(BC047187|pid:none) Danio rerio very low density lipop...    34   9.8
BC142500_1(BC142500|pid:none) Bos taurus netrin G2, mRNA (cDNA c...    34   9.8
(P98158) RecName: Full=Low-density lipoprotein receptor-related ...    34   9.8
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                 34   9.8

>AC117076_50(AC117076|pid:none) Dictyostelium discoideum chromosome 2
            map 3323568-3470138 strain AX4, complete sequence.
          Length = 323

 Score =  277 bits (708), Expect = 7e-73
 Identities = 131/311 (42%), Positives = 175/311 (56%), Gaps = 2/311 (0%)
 Frame = +2

Query: 251  CLPLFLNSCCPGQMGICSTMDSAVKYGDEKSKNVTGCLRHIQSGVVYELYGPIDSMVGFE 430
            C+ L L SCCPGQ+ +C  +D+ +KY   K   +  CLR++ SGV+YEL+G +D + GFE
Sbjct: 2    CMSLILTSCCPGQISLCLDIDTVIKYLTNKELFLKACLRNLNSGVLYELWGDMDPIPGFE 61

Query: 431  FFPTPNKTCEDLGCKNKGLG--MFN*TN*KM*NNFKITMLVFLNQSVIKIVSXXXXTYGN 604
              P PNKTC DLGC+NKGL   +   TN    +            +   I++     YGN
Sbjct: 62   IIPIPNKTCLDLGCENKGLDCVLKPVTNCISPHQSSCCASEPTCSNFSNIINLNEHVYGN 121

Query: 605  GNCDSSCPPEFNCRFIGDVQQCLPSRCGLVECPQGTECKPLDGLDIVSCFKTILPVPSNQ 784
             NC + CP  + CRF+ +   CLPS C  + CP GTECK L GLD+VSCFK I
Sbjct: 122  ENCANECPDGYLCRFVNNSNSCLPSSCDYLNCPIGTECKLLKGLDVVSCFKIIEIDKGID 181

Query: 785  SVTCDQIKCPDQFYCGKGIFSDADCIPLNIDLIGREFDCNLCPTDWKCDKFGWGGLCIEW 964
            +  C  + CPD F CG    ++  C+P     I   FDC++CP +W C K+GW G C+E+
Sbjct: 182  NKDCSNVVCPDGFVCGSASPTNFSCVPPIDSFILDLFDCSICPKNWVCHKYGWSGFCVEF 241

Query: 965  KPFSPGDGEPCLGGVCLFNQYCNTTSQQCEFPKCDDATCHKGMSCIQYQVSHPRVCATTN 1144
               +P    PC+ G CL  Q+CN TSQ+CEF +C   TCH  M C QY  S PRVC  +
Sbjct: 242  NKDTPMIENPCIDGSCLDFQFCNKTSQRCEFERCSPTTCHPQMICFQYHPSSPRVCTGSE 301

Query: 1145 VIPFTSLPDSL 1177
            +I     P +L
Sbjct: 302  IISQIYAPITL 312

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,893,379,007
Number of extensions: 39166199
Number of successful extensions: 135516
Number of sequences better than 10.0: 83
Number of HSP's gapped: 135264
Number of HSP's successfully gapped: 99
Length of query: 424
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 293
Effective length of database: 627,191,635
Effective search space: 183767149055
Effective search space used: 183767149055
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.91  gvh: 0.50  alm: 0.37  top: 0.40  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  8.0 %: vesicles of secretory system
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U00572-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0