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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13254-1
Contig ID Contig-U13254-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13254-1 (Contig-U13254-1Q) /CSM_Contig/Contig-U13254-1Q.Seq.d
AAATAATTTATTTAATTTTAAAATTAATAGATAAAAAGATGGAAATGATA
ACTTTAATTTAATTAAATGTCCAGATGAAATTCCAAATTTAAAAAAATGG
TCAAATTATAAAAGTTGGAAAAAATTGAAATTACCAATTAAAGGAGAATC
AATTAATATTACAACACCGATTTTAATGGATATTAAACCACCAGATTTAG
ATGTTATTAGGATTTTTGATAAAGGAATGTTAGTATGGAAGCATATAAAT
AATTTAGAATTGAGAGTAAAAGCAATACTTATTTATGATGGTGGTCAACT
AATTATTGGAAGTGAACAATGTAAATTCAAATATAAAGCAACAATAACTC
TAATTGGTGATTCAATTTATACTGAAATAAATCAAACAATTAATGGTAAT
GAATATGGTCAAAAAGTAATTGGTATTGATAATGGTGGTACAATTGAACT
TCATAGTGAAGTGACTAAAACAACTTGGACAAAATTAATCTCTACAATTT
CACCATCAACTTTTAATTCAAATAAAAACATTTTAACATTATTGGATAAT
GTCAATGATTGGCCAANNNNNNNNN
Gap no gap
Contig length 575
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 203798
End point 203233
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U13254
List of clone(s) 

est1=SHE485F,1,566
Translated Amino Acid sequence 
nnlfnfkinr*KDGNDNFNLIKCPDEIPNLKKWSNYKSWKKLKLPIKGESINITTPILMD
IKPPDLDVIRIFDKGMLVWKHINNLELRVKAILIYDGGQLIIGSEQCKFKYKATITLIGD
SIYTEINQTINGNEYGQKVIGIDNGGTIELHSEVTKTTWTKLISTISPSTFNSNKNILTL
LDNVNDWPXXX
Translated Amino Acid sequence (All Frames) 
Frame A:
k*fi*f*n**ikrwk**l*fn*msr*nskfkkmvkl*klekieitn*rrin*yyntdfng
y*ttrfrcy*df**rnvsmeayk*friesksntyl*wwstnywk*tm*iqi*snnnsnw*
fnly*nksnn*w**iwsksnwy**wwyn*ts**sd*nnldkinlynftinf*fk*khfni
ig*cq*laxxx


Frame B:
nnlfnfkinr*KDGNDNFNLIKCPDEIPNLKKWSNYKSWKKLKLPIKGESINITTPILMD
IKPPDLDVIRIFDKGMLVWKHINNLELRVKAILIYDGGQLIIGSEQCKFKYKATITLIGD
SIYTEINQTINGNEYGQKVIGIDNGGTIELHSEVTKTTWTKLISTISPSTFNSNKNILTL
LDNVNDWPXXX


Frame C:
iiylilklidkkmemitli*lnvqmkfqi*kngqiikvgkn*nyqlkenqlilqhrf*wi
lnhqi*mllgflikec*ygsi*ii*n*e*kqylfmmvvn*llevnnvnsnikqq*l*lvi
qfilk*ikqlmvmnmvkk*lvlimvvqlnfivk*lkqlgqn*slqfhhqlliqiktf*hy
wimsmigqxxx
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13254-1 (Contig-U13254-1Q)
/CSM_Contig/Contig-U13254-1Q.Seq.d
         (575 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13254-1 (Contig-U13254-1Q) /CSM_Contig/Conti...   955  0.0
Contig-U10054-1 (Contig-U10054-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U14183-1 (Contig-U14183-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U13781-1 (Contig-U13781-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U12450-1 (Contig-U12450-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U11891-1 (Contig-U11891-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U09156-1 (Contig-U09156-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U14667-1 (Contig-U14667-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U12559-1 (Contig-U12559-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U12535-1 (Contig-U12535-1Q) /CSM_Contig/Conti...    34  0.16

>Contig-U13254-1 (Contig-U13254-1Q) /CSM_Contig/Contig-U13254-1Q.Seq.d
          Length = 575

 Score =  955 bits (482), Expect = 0.0
 Identities = 496/503 (98%)
 Strand = Plus / Plus

                                                                       
Query: 64  taaatgtccagatgaaattccaaatttnnnnnnntggtcaaattataaaagttggaaaaa 123
           |||||||||||||||||||||||||||       ||||||||||||||||||||||||||
Sbjct: 64  taaatgtccagatgaaattccaaatttaaaaaaatggtcaaattataaaagttggaaaaa 123

                                                                       
Query: 124 attgaaattaccaattaaaggagaatcaattaatattacaacaccgattttaatggatat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 attgaaattaccaattaaaggagaatcaattaatattacaacaccgattttaatggatat 183

                                                                       
Query: 184 taaaccaccagatttagatgttattaggatttttgataaaggaatgttagtatggaagca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 taaaccaccagatttagatgttattaggatttttgataaaggaatgttagtatggaagca 243

                                                                       
Query: 244 tataaataatttagaattgagagtaaaagcaatacttatttatgatggtggtcaactaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tataaataatttagaattgagagtaaaagcaatacttatttatgatggtggtcaactaat 303

                                                                       
Query: 304 tattggaagtgaacaatgtaaattcaaatataaagcaacaataactctaattggtgattc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tattggaagtgaacaatgtaaattcaaatataaagcaacaataactctaattggtgattc 363

                                                                       
Query: 364 aatttatactgaaataaatcaaacaattaatggtaatgaatatggtcaaaaagtaattgg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aatttatactgaaataaatcaaacaattaatggtaatgaatatggtcaaaaagtaattgg 423

                                                                       
Query: 424 tattgataatggtggtacaattgaacttcatagtgaagtgactaaaacaacttggacaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tattgataatggtggtacaattgaacttcatagtgaagtgactaaaacaacttggacaaa 483

                                                                       
Query: 484 attaatctctacaatttcaccatcaacttttaattcaaataaaaacattttaacattatt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 attaatctctacaatttcaccatcaacttttaattcaaataaaaacattttaacattatt 543

                                  
Query: 544 ggataatgtcaatgattggccaa 566
           |||||||||||||||||||||||
Sbjct: 544 ggataatgtcaatgattggccaa 566


>Contig-U10054-1 (Contig-U10054-1Q) /CSM_Contig/Contig-U10054-1Q.Seq.d
          Length = 1186

 Score = 42.1 bits (21), Expect = 6e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 419 attggtattgataatggtggtacaa 443
           ||||||||||||| |||||||||||
Sbjct: 111 attggtattgatattggtggtacaa 135


>Contig-U14183-1 (Contig-U14183-1Q) /CSM_Contig/Contig-U14183-1Q.Seq.d
          Length = 1097

 Score = 36.2 bits (18), Expect = 0.040
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 182  attaaaccaccagattta 199
            ||||||||||||||||||
Sbjct: 1052 attaaaccaccagattta 1069


 Score = 28.2 bits (14), Expect = 9.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 119 aaaaaattgaaatt 132
           ||||||||||||||
Sbjct: 64  aaaaaattgaaatt 77


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,870
Number of Sequences: 6905
Number of extensions: 10870
Number of successful extensions: 1200
Number of sequences better than 10.0: 374
length of query: 575
length of database: 5,674,871
effective HSP length: 16
effective length of query: 559
effective length of database: 5,564,391
effective search space: 3110494569
effective search space used: 3110494569
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12. 7
Homology vs DNA 
Query= Contig-U13254-1 (Contig-U13254-1Q) /CSM_Contig/Contig-U13254-1Q.Seq.d
         (575 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ393854) Dictyostelium discoideum cDNA clone:dds32j22, 5' ...   841   0.0    1
(AC024424) Homo sapiens chromosome 1 clone RP11-63B18 map 1,...    50   0.035  2
(AC073066) Homo sapiens BAC clone RP11-149P12 from 2, comple...    50   0.088  1
(AC105291) Homo sapiens chromosome 2 clone RP11-792P12, WORK...    50   0.088  1
(CW530407) OP__Ba0041D09.r OP__Ba Oryza punctata genomic clo...    50   0.088  1
(AM450144) Vitis vinifera contig VV78X215430.1, whole genome...    46   0.31   2
(EV829007) TT1D157TV Tetrahymena thermophila SB210 cDNA libr...    48   0.35   1
(DV189206) BCT038_A06_BCT038_3700_91.ab1 C. tentans, embryo ...    32   0.55   3
(AC197224) Zea mays chromosome 9 clone ZMMBBb-565P1; ZMMBBb0...    42   0.71   3
(DV183796) CT027_B12_CT027_3700_90.ab1 C. tentans tissue cul...    32   0.81   3
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome.      38   1.0    11
(AL133548) Human DNA sequence from clone RP11-235O14 on chro...    46   1.4    1
(AC125433) Homo sapiens chromosome 11 clone RP11-322L8 map 1...    46   1.4    1
(AC185549) Microcebus murinus clone CH257-414I16, WORKING DR...    46   1.4    1
(CE315559) tigr-gss-dog-17000361045205 Dog Library Canis lup...    46   1.4    1
(AU286917) Zinnia elegans cDNA, clone:Z1518, primer:M13 forw...    42   1.8    2
(BD460490) Diagnosis of Diseases Associated with Cell Cycle.       36   2.0    3
(BD452412) Diagnosis of Diseases Associated with Cell Cycle.       36   2.0    3
(AX349031) Sequence 489 from Patent WO0202807.                     36   2.0    3
(AX344398) Sequence 245 from Patent WO0200926.                     36   2.0    3
(AX252026) Sequence 287 from Patent WO0168911.                     36   2.0    3
(AC096077) Rattus norvegicus clone CH230-33M1, WORKING DRAFT...    36   2.1    3
(ER356932) 1092351152105 Global-Ocean-Sampling_GS-34-01-01-1...    42   2.7    2
(CS809742) Sequence 389 from Patent WO2006070227.                  32   3.5    2
(AX488878) Sequence 6178 from Patent WO02053728.                   32   3.5    2
(AF272028) Candida albicans putative RNA splicing factor mRN...    32   3.5    2
(AC025393) Homo sapiens chromosome 1 clone RP11-292P10 map 1...    40   3.8    4
(CR847528) Zebrafish DNA sequence from clone CH211-275N24.         42   4.0    2
(CR792439) Zebrafish DNA sequence from clone DKEYP-100A1 in ...    36   4.2    3
(AL583804) Human DNA sequence from clone RP11-276E17 on chro...    40   4.4    4
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    32   4.5    10
(BX293991) Zebrafish DNA sequence from clone CH211-261I24 in...    44   5.4    1
(BX004817) Zebrafish DNA sequence from clone DKEY-169B7 in l...    44   5.4    1
(AL954184) Zebrafish DNA sequence from clone CH211-259A21 in...    44   5.4    1
(AC215440) Solanum lycopersicum chromosome 2 clone C02HBa032...    44   5.4    1
(AC104302) Homo sapiens chromosome 3 clone RP11-379L20, comp...    44   5.4    1
(AC087761) Homo sapiens chromosome 15, clone RP11-2E17, comp...    44   5.4    1
(AC012337) Homo sapiens chromosome , clone RP11-119O22, comp...    44   5.4    1
(AC128802) Rattus norvegicus clone CH230-146B17, *** SEQUENC...    44   5.4    1
(AC111519) Rattus norvegicus clone CH230-142N8, *** SEQUENCI...    44   5.4    1
(AC010074) Homo sapiens chromosome 15 clone RP11-2E17, WORKI...    44   5.4    1
(AQ621182) HS_2238_A2_H10_MR CIT Approved Human Genomic Sper...    44   5.4    1
(ED237383) AUAC-aav08f12.g1 Ascaris suum whole genome shotgu...    44   5.4    1
(CZ981197) 194829 Tomato MboI BAC Library Solanum lycopersic...    44   5.4    1
(CL061690) CH216-96I11_Sp6.1 CH216 Xenopus (Silurana) tropic...    44   5.4    1
(EY100141) CAZI24609.rev CAZI Artemisia annua normalized lea...    44   5.4    1
(CQ903142) Sequence 20 from Patent EP1475388.                      36   5.9    3
(BD357422) NOVEL HUMAN CALCIUM SENSITIVE POTASSIUM CHANNEL S...    36   5.9    3
(AC232094) Solanum tuberosum strain Diploid genotype RH89-03...    36   6.7    4
(AF302466) Pasteurella multocida P1234 region 2 capsule bios...    40   7.9    2
(AC140107) Homo sapiens chromosome 17 clone RP11-1201C10 map...    42   8.0    2
(BJ445745) Dictyostelium discoideum cDNA clone:ddv60c13, 3' ...    36   8.4    2
(CP000551) Prochlorococcus marinus str. AS9601, complete gen...    34   8.9    14
(ED318449) AUAC-aau85d12.g1 Ascaris suum whole genome shotgu...    36   9.0    2
(AC179439) Strongylocentrotus purpuratus clone R3-1040I7, WO...    34   9.0    5
(EI879979) CAH1-66I18TR CAA1Ba Cicer arietinum genomic clone...    40   9.4    2

>(BJ393854) Dictyostelium discoideum cDNA clone:dds32j22, 5' end,
           single read.
          Length = 566

 Score =  841 bits (424), Expect = 0.0
 Identities = 424/424 (100%)
 Strand = Plus / Plus


Query: 143 ggagaatcaattaatattacaacaccgattttaatggatattaaaccaccagatttagat 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 ggagaatcaattaatattacaacaccgattttaatggatattaaaccaccagatttagat 202


Query: 203 gttattaggatttttgataaaggaatgttagtatggaagcatataaataatttagaattg 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gttattaggatttttgataaaggaatgttagtatggaagcatataaataatttagaattg 262


Query: 263 agagtaaaagcaatacttatttatgatggtggtcaactaattattggaagtgaacaatgt 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agagtaaaagcaatacttatttatgatggtggtcaactaattattggaagtgaacaatgt 322


Query: 323 aaattcaaatataaagcaacaataactctaattggtgattcaatttatactgaaataaat 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaattcaaatataaagcaacaataactctaattggtgattcaatttatactgaaataaat 382


Query: 383 caaacaattaatggtaatgaatatggtcaaaaagtaattggtattgataatggtggtaca 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 caaacaattaatggtaatgaatatggtcaaaaagtaattggtattgataatggtggtaca 442


Query: 443 attgaacttcatagtgaagtgactaaaacaacttggacaaaattaatctctacaatttca 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 attgaacttcatagtgaagtgactaaaacaacttggacaaaattaatctctacaatttca 502


Query: 503 ccatcaacttttaattcaaataaaaacattttaacattattggataatgtcaatgattgg 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ccatcaacttttaattcaaataaaaacattttaacattattggataatgtcaatgattgg 562


Query: 563 ccaa 566
           ||||
Sbjct: 563 ccaa 566

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 566,893,380
Number of extensions: 34566560
Number of successful extensions: 2889081
Number of sequences better than 10.0: 57
Length of query: 575
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 552
Effective length of database: 93,106,754,628
Effective search space: 51394928554656
Effective search space used: 51394928554656
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 6
Homology vs Protein 
Query= Contig-U13254-1 (Contig-U13254-1Q) /CSM_Contig/Contig-U13254-1Q.Seq.d
         (575 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC140773_1(BC140773|pid:none) Homo sapiens transmembrane protein...    84   2e-15
(Q9UHN6) RecName: Full=Transmembrane protein 2;  &AB384202_1(AB3...    84   2e-15
(Q5FWI3) RecName: Full=Transmembrane protein 2;  &BC089353_1(BC0...    84   4e-15
AK149803_1(AK149803|pid:none) Mus musculus bone marrow macrophag...    75   1e-12
FN357448_23(FN357448|pid:none) Schistosoma mansoni genome sequen...    71   2e-11
AF480064_1(AF480064|pid:none) Homo sapiens polycystic kidney and...    69   9e-11
AY092083_1(AY092083|pid:none) Homo sapiens TIG multiple domains-...    69   9e-11
(Q8TCZ9) RecName: Full=Fibrocystin; AltName: Full=Polycystic kid...    69   9e-11
AY130764_1(AY130764|pid:none) Mus musculus polyductin (Pkhd1) mR...    67   5e-10
AY438374_1(AY438374|pid:none) Mus musculus PKHD1 (Pkhd1) mRNA, c...    67   5e-10
EU643473_4(EU643473|pid:none) Adineta vaga clone Av240_A TPR rep...    67   5e-10
AB103331_1(AB103331|pid:none) Mus musculus mRNA for KIAA1199 pro...    66   8e-10
(Q8BI06) RecName: Full=Protein KIAA1199 homolog; AltName: Full=P...    66   8e-10
BX649562_2(BX649562|pid:none) Zebrafish DNA sequence from clone ...    65   1e-09
(Q80ZA4) RecName: Full=Fibrocystin-L; AltName: Full=Polycystic k...    61   2e-08
(Q86WI1) RecName: Full=Fibrocystin-L; AltName: Full=Polycystic k...    61   2e-08
BC020256_1(BC020256|pid:none) Homo sapiens KIAA1199, mRNA (cDNA ...    60   6e-08
AY449458_4(AY449458|pid:none) Oikopleura dioica clone BACOIKO002...    52   9e-06
CP000909_1416(CP000909|pid:none) Chloroflexus aurantiacus J-10-f...    50   6e-05
AK149667_1(AK149667|pid:none) Mus musculus bone marrow macrophag...    45   0.002
AC116984_193(AC116984|pid:none) Dictyostelium discoideum chromos...    44   0.002
AP007255_3422(AP007255|pid:none) Magnetospirillum magneticum AMB...    37   0.50
CP001576_63(CP001576|pid:none) Micromonas sp. RCC299 chromosome ...    37   0.50
(Q6EVZ2) RecName: Full=Putative membrane protein ycf1;  &AJ62725...    37   0.50
U52250_1(U52250|pid:none) Human immunodeficiency virus type 1 pa...    35   1.1
AE014188_70(AE014188|pid:none) Plasmodium falciparum 3D7 chromos...    34   3.2
AM747722_321(AM747722|pid:none) Burkholderia cenocepacia J2315 c...    34   3.2
AM180355_2015(AM180355|pid:none) Clostridium difficile 630 compl...    33   4.2
CR940352_343(CR940352|pid:none) Theileria annulata strain Ankara...    33   5.5
CP000485_2837(CP000485|pid:none) Bacillus thuringiensis str. Al ...    33   5.5
AM910995_163(AM910995|pid:none) Plasmodium knowlesi strain H chr...    33   5.5
AF063866_141(AF063866|pid:none) Melanoplus sanguinipes entomopox...    32   9.4
CP000863_3036(CP000863|pid:none) Acinetobacter baumannii ACICU, ...    32   9.4
CT573072_951(CT573072|pid:none) Kuenenia stuttgartiensis genome ...    32   9.4

>BC140773_1(BC140773|pid:none) Homo sapiens transmembrane protein 2,
           mRNA (cDNA clone MGC:176450 IMAGE:9021641), complete
           cds.
          Length = 1320

 Score = 84.3 bits (207), Expect = 2e-15
 Identities = 56/151 (37%), Positives = 81/151 (53%), Gaps = 4/151 (2%)
 Frame = +2

Query: 68  CPDEIPNLKKWSNYKSWKKLKLPIKGESINITTPILMDIKPPDLDVIRIFDKGMLVWKH- 244
           CPD+ P L+ W   +   K  +  +G+ + +T+   +         I I D G+LV+
Sbjct: 113 CPDQNPRLRNWDPGQDSAKQVVIKEGDMLRLTSDATVHS-------IVIQDGGLLVFGDN 165

Query: 245 ---INNLELRVKAILIYDGGQLIIGSEQCKFKYKATITLIGDSIYTEINQTINGNEYGQK 415
                N+ LR   ILI DGG L IG+E+C++K KATITL G S   E   T     +G+K
Sbjct: 166 KDGSRNITLRTHYILIQDGGALHIGAEKCRYKSKATITLYGKSDEGESMPT-----FGKK 220

Query: 416 VIGIDNGGTIELHSEVTKTTWTKLISTISPS 508
            IG++ GGT+ELH    K +WT L  T++ S
Sbjct: 221 FIGVEAGGTLELHG-ARKASWTLLARTLNSS 250

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 776,730,790
Number of extensions: 15321343
Number of successful extensions: 48164
Number of sequences better than 10.0: 34
Number of HSP's gapped: 48117
Number of HSP's successfully gapped: 35
Length of query: 191
Length of database: 1,051,180,864
Length adjustment: 121
Effective length of query: 70
Effective length of database: 659,557,225
Effective search space: 46169005750
Effective search space used: 46169005750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.60  gvh: 0.25  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for Contig-U13254-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0