>Contig-U13253-1 (Contig-U13253-1Q) /CSM_Contig/Contig-U13253-1Q.Seq.d
AAAAAAAANCCCAAAAAAANNNNTTTTTTTTTTTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTN
NNNNTTTTTNAAAAAAAAAAAAANNNTTNNNNNAAAAANNNNNNNNN

est1=SHE468F,1,138

KKXPKKXXFFFLKKKKKKKKKKKKKKKKKKKKFXXFXKKKKXXXXKXXX

Frame A:
KKXPKKXXFFFLKKKKKKKKKKKKKKKKKKKKFXXFXKKKKXXXXKXXX


Frame B:
kkxpkkxxfff*kkkkkkkkkkkkkkkkkkknxxxfxkkkxxxxkxxx


Frame C:
kkxqkxxffffkkkkkkkkkkkkkkkkkkkkixxfxkkkkxxxxkxxx

Query= Contig-U13253-1 (Contig-U13253-1Q)
/CSM_Contig/Contig-U13253-1Q.Seq.d
         (147 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13253-1 (Contig-U13253-1Q) /CSM_Contig/Conti...    40  6e-04
Contig-U14406-1 (Contig-U14406-1Q) /CSM_Contig/Conti...    38  0.002
Contig-U14614-1 (Contig-U14614-1Q) /CSM_Contig/Conti...    28  2.3
Contig-U14606-1 (Contig-U14606-1Q) /CSM_Contig/Conti...    28  2.3
Contig-U14582-1 (Contig-U14582-1Q) /CSM_Contig/Conti...    28  2.3
Contig-U14565-1 (Contig-U14565-1Q) /CSM_Contig/Conti...    28  2.3
Contig-U14311-1 (Contig-U14311-1Q) /CSM_Contig/Conti...    28  2.3
Contig-U13147-1 (Contig-U13147-1Q) /CSM_Contig/Conti...    28  2.3
Contig-U14424-1 (Contig-U14424-1Q) /CSM_Contig/Conti...    26  9.1

>Contig-U13253-1 (Contig-U13253-1Q) /CSM_Contig/Contig-U13253-1Q.Seq.d
          Length = 147

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 1  aaaaaaaancccaaaaaaannnntttttttttttt 35
          |||||||||||||||||||||||||||||||||||
Sbjct: 1  aaaaaaaancccaaaaaaannnntttttttttttt 35


>Contig-U14406-1 (Contig-U14406-1Q) /CSM_Contig/Contig-U14406-1Q.Seq.d
          Length = 148

 Score = 38.2 bits (19), Expect = 0.002
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 2  aaaaaaancccaaaaaaannnntttttttttttt 35
          |||||||||||||||||| |||||||||||||||
Sbjct: 1  aaaaaaancccaaaaaaaannntttttttttttt 34


>Contig-U14614-1 (Contig-U14614-1Q) /CSM_Contig/Contig-U14614-1Q.Seq.d
          Length = 129

 Score = 28.2 bits (14), Expect = 2.3
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                    
Query: 10 cccaaaaaaannnntttttttttttt 35
          |||||||||| |  ||||||||||||
Sbjct: 12 cccaaaaaaaancatttttttttttt 37


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 71,977
Number of Sequences: 6905
Number of extensions: 71977
Number of successful extensions: 56579
Number of sequences better than 10.0: 21
length of query: 147
length of database: 5,674,871
effective HSP length: 15
effective length of query: 132
effective length of database: 5,571,296
effective search space: 735411072
effective search space used: 735411072
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)

Query= Contig-U13253-1 (Contig-U13253-1Q) /CSM_Contig/Contig-U13253-1Q.Seq.d
         (147 letters)

Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum22.seq; ddbjhum3.seq;
ddbjhum4.seq; ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq;
ddbjhum9.seq; /db/DDBJNEW.DATA/a/new_ddbjhum.seq; ddbjpri.seq;
/db/DDBJNEW.DATA/a/new_ddbjpri.seq; ddbjrod1.seq; ddbjrod10.seq;
ddbjrod11.seq; ddbjrod12.seq; ddbjrod13.seq; ddbjrod2.seq;
ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq; ddbjrod7.seq;
ddbjrod8.seq; ddbjrod9.seq; /db/DDBJNEW.DATA/a/new_ddbjrod.seq;
ddbjmam.seq; /db/DDBJNEW.DATA/a/new_ddbjmam.seq; ddbjvrt1.seq;
ddbjvrt2.seq; ddbjvrt3.seq; ddbjvrt4.seq; ddbjvrt5.seq; ddbjvrt6.seq;
/db/DDBJNEW.DATA/a/new_ddbjvrt.seq; ddbjinv1.seq; ddbjinv2.seq;
ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq; ddbjinv6.seq;
/db/DDBJNEW.DATA/a/new_ddbjinv.seq; ddbjpln1.seq; ddbjpln10.seq;
ddbjpln11.seq; ddbjpln2.seq; ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq;
ddbjpln6.seq; ddbjpln7.seq; ddbjpln8.seq; ddbjpln9.seq;
/db/DDBJNEW.DATA/a/new_ddbjpln.seq; ddbjbct1.seq; ddbjbct2.seq;
ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq; ddbjbct7.seq;
ddbjbct8.seq; ddbjbct9.seq; /db/DDBJNEW.DATA/a/new_ddbjbct.seq;
ddbjvrl1.seq; ddbjvrl2.seq; ddbjvrl3.seq; ddbjvrl4.seq;
/db/DDBJNEW.DATA/a/new_ddbjvrl.seq; ddbjphg.seq;
/db/DDBJNEW.DATA/a/new_ddbjphg.seq; ddbjuna.seq;
/db/DDBJNEW.DATA/a/new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq;
ddbjgss100.seq; ddbjgss101.seq; ddbjgss102.seq; ddbjgss103.seq;
ddbjgss104.seq; ddbjgss11.seq; ddbjgss12.seq; ddbjgss13.seq;
ddbjgss14.seq; ddbjgss15.seq; ddbjgss16.seq; ddbjgss17.seq;
ddbjgss18.seq; ddbjgss19.seq; ddbjgss2.seq; ddbjgss20.seq;
ddbjgss21.seq; ddbjgss22.seq; ddbjgss23.seq; ddbjgss24.seq;
ddbjgss25.seq; ddbjgss26.seq; ddbjgss27.seq; ddbjgss28.seq;
ddbjgss29.seq; ddbjgss3.seq; ddbjgss30.seq; ddbjgss31.seq;
ddbjgss32.seq; ddbjgss33.seq; ddbjgss34.seq; ddbjgss35.seq;
ddbjgss36.seq; ddbjgss37.seq; ddbjgss38.seq; ddbjgss39.seq;
ddbjgss40.seq; ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq;
ddbjgss44.seq; ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq;
ddbjgss48.seq; ddbjgss49.seq; ddbjgss50.seq; ddbjgss51.seq;
ddbjgss52.seq; ddbjgss53.seq; ddbjgss54.seq; ddbjgss55.seq;
ddbjgss56.seq; ddbjgss57.seq; ddbjgss58.seq; ddbjgss59.seq;
ddbjgss60.seq; ddbjgss61.seq; ddbjgss62.seq; ddbjgss63.seq;
ddbjgss64.seq; ddbjgss65.seq; ddbjgss66.seq; ddbjgss67.seq;
ddbjgss68.seq; ddbjgss69.seq; ddbjgss7.seq; ddbjgss70.seq;
ddbjgss71.seq; ddbjgss72.seq; ddbjgss73.seq; ddbjgss74.seq;
ddbjgss75.seq; ddbjgss76.seq; ddbjgss77.seq; ddbjgss78.seq;
ddbjgss79.seq; ddbjgss8.seq; ddbjgss80.seq; ddbjgss81.seq;
ddbjgss82.seq; ddbjgss83.seq; ddbjgss84.seq; ddbjgss85.seq;
ddbjgss86.seq; ddbjgss87.seq; ddbjgss88.seq; ddbjgss89.seq;
ddbjgss9.seq; ddbjgss90.seq; ddbjgss91.seq; ddbjgss92.seq;
ddbjgss93.seq; ddbjgss94.seq; ddbjgss95.seq; ddbjgss96.seq;
ddbjgss97.seq; ddbjgss98.seq; ddbjgss99.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss1.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss2.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss3.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg6.seq; ddbjhtg7.seq; ddbjhtg8.seq; ddbjhtg9.seq;
/db/DDBJNEW.DATA/a/new_ddbjhtg1.seq;
/db/DDBJNEW.DATA/a/new_ddbjhtg2.seq; ddbjpat1.seq; ddbjpat10.seq;
ddbjpat11.seq; ddbjpat12.seq; ddbjpat13.seq; ddbjpat14.seq;
ddbjpat15.seq; ddbjpat16.seq; ddbjpat2.seq; ddbjpat3.seq;
ddbjpat4.seq; ddbjpat5.seq; ddbjpat6.seq; ddbjpat7.seq; ddbjpat8.seq;
ddbjpat9.seq; /db/DDBJNEW.DATA/a/new_ddbjpat.seq; ddbjsts1.seq;
ddbjsts2.seq; ddbjsts3.seq; ddbjsts4.seq;
/db/DDBJNEW.DATA/a/new_ddbjsts.seq; ddbjsyn.seq;
/db/DDBJNEW.DATA/a/new_ddbjsyn.seq; est_atha1.seq;
/db/DDBJNEW.DATA/a/new_est_atha1.seq; est_cele1.seq; est_drer1.seq;
/db/DDBJNEW.DATA/a/new_est_drer1.seq; est_dmel1.seq;
/db/DDBJNEW.DATA/a/new_est_dmel1.seq; est_gmax1.seq;
/db/DDBJNEW.DATA/a/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; /db/DDBJNEW.DATA/a/new_est_hum1.seq;
est_lesc1.seq; /db/DDBJNEW.DATA/a/new_est_lesc1.seq; est_mous1.seq;
est_mous2.seq; est_mous3.seq; /db/DDBJNEW.DATA/a/new_est_mous1.seq;
est_osat1.seq; /db/DDBJNEW.DATA/a/new_est_osat1.seq; est_rnor1.seq;
/db/DDBJNEW.DATA/a/new_est_rnor1.seq; est_xlae1.seq;
/db/DDBJNEW.DATA/a/new_est_xlae1.seq; est_zmay1.seq;
/db/DDBJNEW.DATA/a/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq;
est_rest3.seq; est_rest4.seq; est_rest5.seq;
/db/DDBJNEW.DATA/a/new_est_rest1.seq
           39,496,834 sequences; \,895,407,339 total letters

Searching........................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ750311|AJ750311.1 Gerbera hybrid cv. 'Terra Regina' EST, c...    40   0.62   2
CK361244|CK361244.1 AGENCOURT_17114215 NIH_ZGC_4 Danio rerio...    40   0.92   2
CL485745|CL485745.1 SAIL_421_H05.v1 SAIL Collection Arabidop...    40   1.1    2
CL115906|CL115906.1 ISB1-62J20_T7.1 ISB1 Xenopus tropicalis ...    40   1.3    2
BQ583657|BQ583657.1 E011977-024-005-M07-SP6 MPIZ-ADIS-024-in...    38   1.6    2
CB094712|CB094712.1 hz74b11.b1 Gingko microsporophyll (NYBG)...    38   2.1    2
BZ039110|BZ039110.1 lka40e01.b1 B.oleracea002 Brassica olera...    38   3.2    2
CK231939|CK231939.1 ILLUMIGEN_MCQ_3121 Katze_MMPL2 Macaca mu...    38   5.0    2
CB080314|CB080314.1 hp84d12.b1 Hedyotis terminalis flower - ...    32   7.3    2
BF826461|BF826461.1 CM4-HN0020-221100-451-e06 HN0020 Homo sa...    40   9.2    1
CO087617|CO087617.1 GR__Ea06C19.r GR__Ea Gossypium raimondii...    40   9.2    1
CG755615|CG755615.1 P051-1-F10.zb Ppa EcoRI BAC Library Pris...    40   9.2    1
CN798622|CN798622.1 DI4P02112_08 4h-POST INFECTION Caenorhab...    40   9.2    1
BH157536|BH157536.1 ENTRL88TR Entamoeba histolytica Sheared ...    40   9.2    1
BP510163|BP510163.1 Hydra magnipapillata cDNA, clone:hmp_04006.    40   9.2    1

>AJ750311|AJ750311.1 Gerbera hybrid cv. 'Terra Regina' EST, clone
          G0000100005A07F1.
          Length = 492

 Score = 40.1 bits (20), Expect(2) = 0.62
 Identities = 30/35 (85%)
 Strand = Plus / Plus


Query: 1  aaaaaaaancccaaaaaaannnntttttttttttt 35
          |||||||| ||||||||||    ||||||||||||
Sbjct: 39 aaaaaaaaccccaaaaaaaggggtttttttttttt 73

 Score = 24.3 bits (12), Expect(2) = 0.62
 Identities = 12/12 (100%)
 Strand = Plus / Minus


Query: 24  tttttttttttt 35
           ||||||||||||
Sbjct: 234 tttttttttttt 223

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 80,055,067
Number of Sequences: 39496834
Number of extensions: 80055067
Number of successful extensions: 59217190
Number of sequences better than 10.0: 31
length of query: 147
length of database: \,895,407,339
effective HSP length: 21
effective length of query: 126
effective length of database: \,065,973,825
effective search space: 5552312701950
effective search space used: 5552312701950
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
[blastall] WARNING:  [000.000]  Reached max 400 HSPs in BlastSaveCurrentHsp, continuing with this limit

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.

Query= Contig-U13253-1 (Contig-U13253-1Q) /CSM_Contig/Contig-U13253-1Q.Seq.d
         (147 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.290    0.114    0.290

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 31,173,794
Number of extensions: 2942140
Number of sequences better than 10.0: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 49
Length of database: 1,051,180,864
Length adjustment: 22
Effective length of query: 27
Effective length of database: 979,976,566
Effective search space: 26459367282
Effective search space used: 26459367282
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 6.7 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.3 bits)
S2: 25 (14.2 bits)

 psg: 0.72  gvh: 0.15  alm: 0.78  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.00
 nuc: 2.29  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U13253-1 is nuc