Contig-U13249-1
Contig ID Contig-U13249-1
Contig update 2002.12.18
Contig sequence
>Contig-U13249-1 (Contig-U13249-1Q) /CSM_Contig/Contig-U13249-1Q.Seq.d
TACCNGAATGGTCAAGATTACCATTTGAAGAGTCTGGTGTAAAGAGTTTA
AATAGAGTTCAAAGTAAATTATTTGATTGTGCATTCAAGACTGATAATAA
TTTATTGTTGAGTGCACCAACGTCGAGTGGTAAGACTAATGTTGCAATGT
TAACTATTCTACATGAAATTGGAAAGAATCGTGATAGAGATAGTGGTAAG
ATCAGATTGGATGCCTTTAAGATTGTTTACATTGCACCAATGAAATCACT
CGTACAGGAGATGGTGGGTAATTTCAGTAAACGTTTGAAATCCTATGGCA
TCGTAGTGAATGAGCTCACTGGTGATCAATCATTAACTAATAAACAAATC
TCAGAGACTCAAATCATTGTGACAACACCAGAGAAATGGGATATTATCAC
TAGAAAGTCAGGTGACCGTGCATACACTCAATTGGTGAAGTTAATCATTA
TCGATGAGATTCATTTACTTCATGATGAAAGAGGACCTGTGTTGGAGTGC
ATCGTTGCAAGAACATTGCGTATGATTGAATCAACTCAACAAATGGTACG
TTTGGTTGGTTTATCAGCTACATTACCAAACTATGAAGATGTTGCAACCT
TTTTACGTGTTGAACCCGATGGTGTGTTCTACTTTGACTCATCCTANNNN
NNNNN

Gap no gap
Contig length 655
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4082841
End point 4082196
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U13249
List of clone(s)

est1=SHE154F,1,646
Translated Amino Acid sequence
PEWSRLPFEESGVKSLNRVQSKLFDCAFKTDNNLLLSAPTSSGKTNVAMLTILHEIGKNR
DRDSGKIRLDAFKIVYIAPMKSLVQEMVGNFSKRLKSYGIVVNELTGDQSLTNKQISETQ
IIVTTPEKWDIITRKSGDRAYTQLVKLIIIDEIHLLHDERGPVLECIVARTLRMIESTQQ
MVRLVGLSATLPNYEDVATFLRVEPDGVFYFDSSXXX


Translated Amino Acid sequence (All Frames)
Frame A:
yxngqdyhlkslv*rv*iefkvnylivhsrliiiyc*vhqrrvvrlmlqc*lfymkleri
vieivvrsdwmplrlftlhq*nhsyrrwwvisvnv*npmas**msslvinh*linksqrl
ksl*qhqrngilslesqvtvhtlnw*s*slsmrfiyfmmkedlcwsaslqehcv*lnqln
kwyvwlvyqlhyqtmkmlqpfyvlnpmvcstlthpxxx


Frame B:
txmvkiti*rvwckefk*ssk*ii*lciqd***fivectnvew*d*ccnvnyst*nwkes
**r*w*dqigcl*dclhctneitrtgdgg*fq*tfeilwhrse*ahw*siin**tnlrds
nhcdntremgyyh*kvr*pcihsigevnhyr*dsfts**krtcvgvhrckniayd*inst
ngtfgwfisyitkl*rccnlftc*trwcvll*lilxxx


Frame C:
PEWSRLPFEESGVKSLNRVQSKLFDCAFKTDNNLLLSAPTSSGKTNVAMLTILHEIGKNR
DRDSGKIRLDAFKIVYIAPMKSLVQEMVGNFSKRLKSYGIVVNELTGDQSLTNKQISETQ
IIVTTPEKWDIITRKSGDRAYTQLVKLIIIDEIHLLHDERGPVLECIVARTLRMIESTQQ
MVRLVGLSATLPNYEDVATFLRVEPDGVFYFDSSXXX


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U13249-1 (Contig-U13249-1Q)
/CSM_Contig/Contig-U13249-1Q.Seq.d
(655 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U13249-1 (Contig-U13249-1Q) /CSM_Contig/Conti... 1275 0.0
Contig-U13351-1 (Contig-U13351-1Q) /CSM_Contig/Conti... 34 0.18
Contig-U12805-1 (Contig-U12805-1Q) /CSM_Contig/Conti... 34 0.18
Contig-U09087-1 (Contig-U09087-1Q) /CSM_Contig/Conti... 34 0.18
Contig-U12894-1 (Contig-U12894-1Q) /CSM_Contig/Conti... 32 0.72
Contig-U12395-1 (Contig-U12395-1Q) /CSM_Contig/Conti... 32 0.72
Contig-U12053-1 (Contig-U12053-1Q) /CSM_Contig/Conti... 32 0.72
Contig-U11933-1 (Contig-U11933-1Q) /CSM_Contig/Conti... 32 0.72
Contig-U11914-1 (Contig-U11914-1Q) /CSM_Contig/Conti... 32 0.72
Contig-U11181-1 (Contig-U11181-1Q) /CSM_Contig/Conti... 32 0.72

>Contig-U13249-1 (Contig-U13249-1Q) /CSM_Contig/Contig-U13249-1Q.Seq.d
Length = 655

Score = 1275 bits (643), Expect = 0.0
Identities = 646/646 (100%)
Strand = Plus / Plus


Query: 1 taccngaatggtcaagattaccatttgaagagtctggtgtaaagagtttaaatagagttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taccngaatggtcaagattaccatttgaagagtctggtgtaaagagtttaaatagagttc 60


Query: 61 aaagtaaattatttgattgtgcattcaagactgataataatttattgttgagtgcaccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaagtaaattatttgattgtgcattcaagactgataataatttattgttgagtgcaccaa 120


Query: 121 cgtcgagtggtaagactaatgttgcaatgttaactattctacatgaaattggaaagaatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgtcgagtggtaagactaatgttgcaatgttaactattctacatgaaattggaaagaatc 180


Query: 181 gtgatagagatagtggtaagatcagattggatgcctttaagattgtttacattgcaccaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtgatagagatagtggtaagatcagattggatgcctttaagattgtttacattgcaccaa 240


Query: 241 tgaaatcactcgtacaggagatggtgggtaatttcagtaaacgtttgaaatcctatggca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgaaatcactcgtacaggagatggtgggtaatttcagtaaacgtttgaaatcctatggca 300


Query: 301 tcgtagtgaatgagctcactggtgatcaatcattaactaataaacaaatctcagagactc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcgtagtgaatgagctcactggtgatcaatcattaactaataaacaaatctcagagactc 360


Query: 361 aaatcattgtgacaacaccagagaaatgggatattatcactagaaagtcaggtgaccgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaatcattgtgacaacaccagagaaatgggatattatcactagaaagtcaggtgaccgtg 420


Query: 421 catacactcaattggtgaagttaatcattatcgatgagattcatttacttcatgatgaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 catacactcaattggtgaagttaatcattatcgatgagattcatttacttcatgatgaaa 480


Query: 481 gaggacctgtgttggagtgcatcgttgcaagaacattgcgtatgattgaatcaactcaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gaggacctgtgttggagtgcatcgttgcaagaacattgcgtatgattgaatcaactcaac 540


Query: 541 aaatggtacgtttggttggtttatcagctacattaccaaactatgaagatgttgcaacct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaatggtacgtttggttggtttatcagctacattaccaaactatgaagatgttgcaacct 600


Query: 601 ttttacgtgttgaacccgatggtgtgttctactttgactcatccta 646
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttttacgtgttgaacccgatggtgtgttctactttgactcatccta 646


>Contig-U13351-1 (Contig-U13351-1Q) /CSM_Contig/Contig-U13351-1Q.Seq.d
Length = 1208

Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 181 gtgatagagatagtggt 197
|||||||||||||||||
Sbjct: 852 gtgatagagatagtggt 868


>Contig-U12805-1 (Contig-U12805-1Q) /CSM_Contig/Contig-U12805-1Q.Seq.d
Length = 4737

Score = 34.2 bits (17), Expect = 0.18
Identities = 20/21 (95%)
Strand = Plus / Minus


Query: 83 attcaagactgataataattt 103
|||||| ||||||||||||||
Sbjct: 287 attcaatactgataataattt 267


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5965
Number of Sequences: 6905
Number of extensions: 5965
Number of successful extensions: 599
Number of sequences better than 10.0: 56
length of query: 655
length of database: 5,674,871
effective HSP length: 16
effective length of query: 639
effective length of database: 5,564,391
effective search space: 3555645849
effective search space used: 3555645849
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 7
Homology vs DNA
Query= Contig-U13249-1 (Contig-U13249-1Q) /CSM_Contig/Contig-U13249-1Q.Seq.d
(655 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ393791) Dictyostelium discoideum cDNA clone:dds32k13, 5' ... 1275 0.0 1
(ED734004) GM_WBb0092F19.r GM_WBb Glycine max genomic clone ... 84 1e-21 4
(AM476761) Vitis vinifera contig VV78X102785.4, whole genome... 58 9e-21 3
(FK529231) 454GmaGlobSeed263863 Soybean Seeds Containing Glo... 84 6e-17 2
(ED677653) GM_WBb0009E03.r GM_WBb Glycine max genomic clone ... 62 1e-16 3
(AC007369) Arabidopsis thaliana chromosome I BAC F9H16 genom... 76 5e-15 2
(AP007381) Lotus japonicus genomic DNA, chromosome 3, clone:... 80 2e-13 2
(AP006696) Lotus japonicus genomic DNA, chromosome 3, clone:... 80 2e-13 2
(EI867486) CAH1-36K15TV CAA1Ba Cicer arietinum genomic clone... 72 2e-13 2
(ER893157) TEBA3D05 FST of the ty1 copia retrotransposon Tos... 54 5e-11 3
(FH635004) CHO_OF4967xb17r1.ab1 CHO_OF4 Nicotiana tabacum ge... 78 4e-10 1
(FH519520) CHO_OF4716xb17r1.ab1 CHO_OF4 Nicotiana tabacum ge... 78 4e-10 1
(FH459304) CHO_OF4929xp18r1.ab1 CHO_OF4 Nicotiana tabacum ge... 78 4e-10 1
(FH395868) CHO_OF4804xi15f1.ab1 CHO_OF4 Nicotiana tabacum ge... 78 4e-10 1
(ET790612) CHO_OF645xf12f1.ab1 CHO_OF Nicotiana tabacum geno... 78 4e-10 1
(CV241339) WS02511.B21_O14 PT-MB-N-A-15 Populus trichocarpa ... 50 6e-10 2
(CL962930) OsIFCC008286 Oryza sativa Express Library Oryza s... 54 4e-09 3
(DY889400) CeleSEQ10929 Cunninghamella elegans pBluescript (... 46 4e-09 4
(AP008209) Oryza sativa (japonica cultivar-group) genomic DN... 54 7e-09 2
(CU329670) Schizosaccharomyces pombe chromosome I. 48 7e-09 2
(AC189448) Brassica rapa subsp. pekinensis clone KBrB071K22,... 54 8e-09 2
(AC092558) Oryza sativa chromosome 3 BAC OSJNBb0036F07 genom... 54 8e-09 2
(EA692500) Sequence 71379 from patent US 7365185. 54 8e-09 2
(CU323805) Flanking Sequence Tags of the ty1 copia retrotran... 54 9e-09 2
(EI024545) bb45d06.f Dekkera bruxellensis Random Genomic Lib... 40 5e-08 3
(EI160015) DH027A03_R1.ab1 Brachypodium distachyon Bd21 Hind... 46 3e-07 3
(CG919347) MBEDK16TRC mth2 Medicago truncatula genomic clone... 64 4e-07 2
(DX201406) OR_ABa0070L07.f OR_ABa Oryza ridleyi genomic clon... 50 5e-07 2
(CR478608) mth2-188I2FM1 BAC end, cultivar Jemalong A17 of M... 62 6e-07 2
(AC174366) Medicago truncatula clone mth2-46l7, complete seq... 66 2e-06 1
(AC202497) Medicago truncatula clone mth2-32f8, WORKING DRAF... 66 2e-06 1
(ET894838) CHO_OF153xd05r1.ab1 CHO_OF Nicotiana tabacum geno... 66 2e-06 1
(CZ536175) SRAA-aad01g09.b1 Strongyloides ratti whole genome... 48 6e-06 2
(CN394291) 17000531957926 GRN_EB Homo sapiens cDNA 5', mRNA ... 48 2e-05 3
(CN394330) 17000424335146 GRN_ES Homo sapiens cDNA 5', mRNA ... 48 2e-05 3
(CN394323) 17000532568215 GRN_EB Homo sapiens cDNA 5', mRNA ... 48 2e-05 3
(CD653876) AGENCOURT_14557052 NIA Human H1 Embryonic Stem Ce... 48 3e-05 3
(AU140773) Homo sapiens cDNA clone:PLACE4000205, 5' end, exp... 48 4e-05 3
(AL560734) human full-length cDNA 5-PRIME end of clone CS0DL... 48 5e-05 3
(BM478548) AGENCOURT_6457684 NIH_MGC_92 Homo sapiens cDNA cl... 48 6e-05 3
(BM451396) AGENCOURT_6390840 NIH_MGC_67 Homo sapiens cDNA cl... 48 6e-05 3
(DX176101) OR_ABa0036F22.r OR_ABa Oryza ridleyi genomic clon... 48 7e-05 2
(BU722697) SJMALA09 SJM Schistosoma japonicum cDNA similar t... 54 3e-04 2
(CG205746) PUFSV90TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 46 3e-04 2
(AM511934) Paracentrotus lividus EST, clone MPMGp1171A0355Q,... 46 3e-04 2
(CG205743) PUFSV90TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 46 4e-04 2
(AY811682) Schistosoma japonicum SJCHGC04277 protein mRNA, p... 54 4e-04 2
(AL831994) Homo sapiens mRNA; cDNA DKFZp451J103 (from clone ... 48 0.001 3
(BC065924) Homo sapiens activating signal cointegrator 1 com... 48 0.001 3
(BD160238) Primer for synthesizing full-length cDNA and use ... 48 0.001 3
(AX883291) Sequence 18196 from Patent EP1074617. 48 0.001 3
(AK023840) Homo sapiens cDNA FLJ13778 fis, clone PLACE400043... 48 0.001 3
(BD160654) Primer for synthesizing full-length cDNA and use ... 48 0.001 3
(AX883996) Sequence 18901 from Patent EP1074617. 48 0.001 3
(AK024391) Homo sapiens cDNA FLJ14329 fis, clone PLACE400025... 48 0.001 3
(DD386328) COMPOSITIONS AND METHODS FOR THE DIAGNOSIS AND TR... 48 0.001 3
(BC112891) Homo sapiens activating signal cointegrator 1 com... 48 0.001 3
(CZ445595) WG1E08:GG1E08 Brassica-WG Brassica oleracea genom... 44 0.001 2
(DQ049086) Pan troglodytes U5-200KD gene, VIRTUAL TRANSCRIPT... 48 0.002 3
(DQ049085) Homo sapiens U5-200KD gene, VIRTUAL TRANSCRIPT, p... 48 0.002 3
(CP000591) Ostreococcus lucimarinus CCE9901 chromosome 11, c... 56 0.002 1
(CQ726419) Sequence 12353 from Patent WO02068579. 48 0.002 3
(AB018331) Homo sapiens mRNA for KIAA0788 protein, partial cds. 48 0.002 3
(AY572488) Homo sapiens 200 kDa U5 snRNP-specific spliceosom... 48 0.002 3
(DD178469) NUCLEIC ACID-ASSOCIATED PROTEINS. 48 0.002 3
(CR858273) Pongo abelii mRNA; cDNA DKFZp469O1210 (from clone... 48 0.002 3
(AL041160) Homo sapiens mRNA; EST DKFZp434G1316_r1 (from cl... 48 0.002 2
(CF697677) CCAE792TR C.neoformans strain JEC21 Cryptococcus ... 40 0.002 3
(BF869422) IL3-ET0115-091000-286-A08 ET0115 Homo sapiens cDN... 48 0.002 2
(BQ335181) MR4-MT0255-140201-205-c02 MT0255 Homo sapiens cDN... 48 0.003 2
(CN394297) 17000532185019 GRN_EB Homo sapiens cDNA 5', mRNA ... 48 0.003 2
(DA804488) Homo sapiens cDNA clone OCBBF3019204, 5' end, mRN... 48 0.003 2
(DA852514) Homo sapiens cDNA clone PLACE7002485, 5' end, mRN... 48 0.003 2
(DA721339) Homo sapiens cDNA clone NT2RI3001746, 5' end, mRN... 48 0.003 2
(DA534499) Homo sapiens cDNA clone FEBRA2028759, 5' end, mRN... 48 0.003 2
(BP315881) Homo sapiens cDNA clone: OFR09622, Sugano cDNA li... 48 0.003 2
(CD359937) AGENCOURT_14276046 NIH_MGC_180 Homo sapiens cDNA ... 48 0.005 2
(BM477502) AGENCOURT_6485134 NIH_MGC_85 Homo sapiens cDNA cl... 48 0.006 2
(CZ742960) OC__Ba0089K24.f OC__Ba Oryza coarctata genomic cl... 54 0.006 1
(CL816799) OR_CBa0034C24.r OR_CBa Oryza rufipogon genomic cl... 54 0.006 1
(CV748377) SJL_35_003__5-2__44.T3_046.ab1 SJL Schistosoma ja... 54 0.006 1
(CR382139) Debaryomyces hansenii chromosome G of strain CBS7... 48 0.009 9
(W23506) zb46d04.r1 Soares_fetal_lung_NbHL19W Homo sapiens c... 48 0.009 2
(AE014296) Drosophila melanogaster chromosome 3L, complete s... 42 0.013 2
(CT023697) KBrH135C15 genomic clone, KBrH (HindIII) BAC libr... 42 0.013 2
(AC093499) Drosophila melanogaster 3L BAC RP98-18K24 (Roswel... 42 0.017 2
(AC014424) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 42 0.018 2
(CQ584825) Sequence 12583 from Patent WO0171042. 42 0.019 2
(BT016121) Drosophila melanogaster LD03265 full insert cDNA. 42 0.019 2
(CQ584826) Sequence 12584 from Patent WO0171042. 42 0.019 2
(AR507768) Sequence 12728 from patent US 6703491. 42 0.020 2
(AR523582) Sequence 28542 from patent US 6703491. 42 0.021 2
(CO341790) EP13146.3prime Exelixis FlyTag CK02 pCDNA-SK+ Dro... 42 0.021 2
(EC251481) 475619 CK02 Drosophila melanogaster cDNA clone 21... 42 0.021 2
(AP009859) Lotus japonicus genomic DNA, chromosome 5, clone:... 52 0.026 1
(AC195916) Zea mays chromosome 7 clone ZMMBBb-27P18; ZMMBBb0... 46 0.034 2
(AC092507) Homo sapiens chromosome RPCI-11 clone RP11-184I3,... 48 0.040 4
(AC021606) Homo sapiens clone RP11-226O6, WORKING DRAFT SEQU... 48 0.048 4
(AC206295) Zea mays chromosome 7 clone CH201-476N23; ZMMBBc0... 46 0.051 2
(EA709396) Sequence 88275 from patent US 7365185. 46 0.060 2

>(BJ393791) Dictyostelium discoideum cDNA clone:dds32k13, 5' end,
single read.
Length = 646

Score = 1275 bits (643), Expect = 0.0
Identities = 646/646 (100%)
Strand = Plus / Plus


Query: 1 taccngaatggtcaagattaccatttgaagagtctggtgtaaagagtttaaatagagttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taccngaatggtcaagattaccatttgaagagtctggtgtaaagagtttaaatagagttc 60


Query: 61 aaagtaaattatttgattgtgcattcaagactgataataatttattgttgagtgcaccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaagtaaattatttgattgtgcattcaagactgataataatttattgttgagtgcaccaa 120


Query: 121 cgtcgagtggtaagactaatgttgcaatgttaactattctacatgaaattggaaagaatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgtcgagtggtaagactaatgttgcaatgttaactattctacatgaaattggaaagaatc 180


Query: 181 gtgatagagatagtggtaagatcagattggatgcctttaagattgtttacattgcaccaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtgatagagatagtggtaagatcagattggatgcctttaagattgtttacattgcaccaa 240


Query: 241 tgaaatcactcgtacaggagatggtgggtaatttcagtaaacgtttgaaatcctatggca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgaaatcactcgtacaggagatggtgggtaatttcagtaaacgtttgaaatcctatggca 300


Query: 301 tcgtagtgaatgagctcactggtgatcaatcattaactaataaacaaatctcagagactc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcgtagtgaatgagctcactggtgatcaatcattaactaataaacaaatctcagagactc 360


Query: 361 aaatcattgtgacaacaccagagaaatgggatattatcactagaaagtcaggtgaccgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaatcattgtgacaacaccagagaaatgggatattatcactagaaagtcaggtgaccgtg 420


Query: 421 catacactcaattggtgaagttaatcattatcgatgagattcatttacttcatgatgaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 catacactcaattggtgaagttaatcattatcgatgagattcatttacttcatgatgaaa 480


Query: 481 gaggacctgtgttggagtgcatcgttgcaagaacattgcgtatgattgaatcaactcaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gaggacctgtgttggagtgcatcgttgcaagaacattgcgtatgattgaatcaactcaac 540


Query: 541 aaatggtacgtttggttggtttatcagctacattaccaaactatgaagatgttgcaacct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaatggtacgtttggttggtttatcagctacattaccaaactatgaagatgttgcaacct 600


Query: 601 ttttacgtgttgaacccgatggtgtgttctactttgactcatccta 646
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttttacgtgttgaacccgatggtgtgttctactttgactcatccta 646

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 628,306,900
Number of extensions: 33349214
Number of successful extensions: 2446521
Number of sequences better than 10.0: 184
Length of query: 655
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 632
Effective length of database: 93,106,754,628
Effective search space: 58843468924896
Effective search space used: 58843468924896
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 6
Homology vs Protein
Query= Contig-U13249-1 (Contig-U13249-1Q) /CSM_Contig/Contig-U13249-1Q.Seq.d
(655 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CP001577_153(CP001577|pid:none) Micromonas sp. RCC299 chromosome... 259 6e-68
BX842634_34(BX842634|pid:none) Neurospora crassa DNA linkage gro... 256 3e-67
CR858273_1(CR858273|pid:none) Pongo abelii mRNA; cDNA DKFZp469O1... 254 2e-66
(O75643) RecName: Full=U5 small nuclear ribonucleoprotein 200 kD... 254 2e-66
AL845368_1(AL845368|pid:none) Mouse DNA sequence from clone RP23... 254 2e-66
AK173025_1(AK173025|pid:none) Mus musculus mRNA for mKIAA0788 pr... 254 2e-66
BC065924_1(BC065924|pid:none) Homo sapiens small nuclear ribonuc... 254 2e-66
AM270376_37(AM270376|pid:none) Aspergillus niger contig An16c024... 253 5e-66
AK023840_1(AK023840|pid:none) Homo sapiens cDNA FLJ13778 fis, cl... 252 8e-66
AM920435_941(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 247 2e-64
AP007151_603(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 245 7e-64
(Q9U2G0) RecName: Full=Putative U5 small nuclear ribonucleoprote... 238 9e-62
(Q54G57) RecName: Full=Activating signal cointegrator 1 complex ... 238 2e-61
AY613856_35(AY613856|pid:none) Oikopleura dioica clone BACOIKO00... 237 3e-61
AE017346_423(AE017346|pid:none) Cryptococcus neoformans var. neo... 233 5e-60
AL121965_1(AL121965|pid:none) Human DNA sequence from clone RP1-... 221 2e-56
AK039567_1(AK039567|pid:none) Mus musculus adult male spinal cor... 219 6e-56
(P32639) RecName: Full=Pre-mRNA-splicing helicase BRR2; ... 219 6e-56
AB006696_13(AB006696|pid:none) Arabidopsis thaliana genomic DNA,... 217 3e-55
CU928171_598(CU928171|pid:none) Kluyveromyces thermotolerans str... 213 3e-54
CP001575_330(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 213 5e-54
CP000588_191(CP000588|pid:none) Ostreococcus lucimarinus CCE9901... 212 9e-54
CR382123_770(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 211 2e-53
AP007162_213(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 206 4e-52
AE016820_482(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 206 4e-52
AM920427_1401(AM920427|pid:none) Penicillium chrysogenum Wiscons... 205 8e-52
AM270320_30(AM270320|pid:none) Aspergillus niger contig An14c013... 202 9e-51
FN357487_21(FN357487|pid:none) Schistosoma mansoni genome sequen... 197 2e-49
AY449461_9(AY449461|pid:none) Oikopleura dioica clone BACOIKO005... 197 2e-49
T27149(T27149)hypothetical protein Y54E2A.6 - Caenorhabditis ele... 197 2e-49
FM992692_449(FM992692|pid:none) Candida dubliniensis CD36 chromo... 197 3e-49
AC092558_6(AC092558|pid:none) Oryza sativa chromosome 3 BAC OSJN... 196 5e-49
CU638744_229(CU638744|pid:none) Podospora anserina genomic DNA c... 194 2e-48
CR382139_871(CR382139|pid:none) Debaryomyces hansenii strain CBS... 194 2e-48
AM494954_94(AM494954|pid:none) Leishmania braziliensis chromosom... 193 3e-48
AY811682_1(AY811682|pid:none) Schistosoma japonicum SJCHGC04277 ... 193 3e-48
(P53327) RecName: Full=Antiviral helicase SLH1; EC=3.6.... 191 2e-47
CR380953_16(CR380953|pid:none) Candida glabrata strain CBS138 ch... 191 2e-47
CP000496_352(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 189 6e-47
AE016815_354(AE016815|pid:none) Ashbya gossypii (= Eremothecium ... 187 2e-46
CU928166_383(CU928166|pid:none) Kluyveromyces thermotolerans str... 187 2e-46
AE017349_148(AE017349|pid:none) Cryptococcus neoformans var. neo... 186 7e-46
(O60072) RecName: Full=Putative helicase mug81; EC=3.6.... 184 2e-45
FN392319_579(FN392319|pid:none) Pichia pastoris GS115 chromosome... 182 6e-45
CT005252_50(CT005252|pid:none) Leishmania major strain Friedlin,... 179 5e-44
AM494950_32(AM494950|pid:none) Leishmania braziliensis chromosom... 179 5e-44
AM910987_263(AM910987|pid:none) Plasmodium knowlesi strain H chr... 175 9e-43
CR954211_134(CR954211|pid:none) Ostreococcus tauri strain OTTH05... 158 2e-37
AL035477_19(AL035477|pid:none) Plasmodium falciparum MAL4P4. &A... 144 2e-33
AM494939_17(AM494939|pid:none) Leishmania braziliensis chromosom... 143 5e-33
AY051531_1(AY051531|pid:none) Drosophila melanogaster GH18520 fu... 140 3e-32
FN373858_1(FN373858|pid:none) Schistosoma mansoni genome sequenc... 140 3e-32
AL590447_83(AL590447|pid:none) chromosome VII of strain GB-M1 of... 135 1e-30
BC059917_1(BC059917|pid:none) Mus musculus activating signal coi... 128 2e-28
AP007155_372(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 127 4e-28
DQ158857_63(DQ158857|pid:none) Bigelowiella natans nucleomorph c... 124 3e-27
AP008209_720(AP008209|pid:none) Oryza sativa (japonica cultivar-... 123 4e-27
AM910994_671(AM910994|pid:none) Plasmodium knowlesi strain H chr... 122 1e-26
AY822649_1(AY822649|pid:none) Arabidopsis thaliana meiotic recom... 117 3e-25
AM920437_215(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 116 5e-25
AE014187_368(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 116 7e-25
CU633895_632(CU633895|pid:none) Podospora anserina genomic DNA c... 115 1e-24
FJ528581_1(FJ528581|pid:none) Sordaria macrospora meiotic helica... 114 3e-24
AK090671_1(AK090671|pid:none) Homo sapiens cDNA FLJ33352 fis, cl... 112 1e-23
FM992689_376(FM992689|pid:none) Candida dubliniensis CD36 chromo... 111 2e-23
AP008208_1864(AP008208|pid:none) Oryza sativa (japonica cultivar... 110 4e-23
CR954211_135(CR954211|pid:none) Ostreococcus tauri strain OTTH05... 110 4e-23
FJ008126_1(FJ008126|pid:none) Oryza sativa Japonica Group cultiv... 110 4e-23
DQ485348_1(DQ485348|pid:none) Trichomonas vaginalis strain NIH-C... 109 8e-23
AE017349_91(AE017349|pid:none) Cryptococcus neoformans var. neof... 105 9e-22
(P51979) RecName: Full=ATP-dependent DNA helicase MER3; ... 104 3e-21
(A2PYH4) RecName: Full=Probable ATP-dependent DNA helicase HFM1;... 103 3e-21
CP001324_473(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 102 1e-20
BC132823_1(BC132823|pid:none) Homo sapiens HFM1, ATP-dependent D... 101 2e-20
U22156_1(U22156|pid:none) Saccharomyces cerevisiae Hfm1p (HFM1) ... 101 2e-20
S61610(S61610;S59815;S64277) HFM1 protein - yeast (Saccharomyces... 101 2e-20
AY069270_1(AY069270|pid:none) Drosophila melanogaster GM09620 fu... 99 8e-20
AB180404_1(AB180404|pid:none) Coprinopsis cinerea mRNA for mer3,... 98 2e-19
AB018114_13(AB018114|pid:none) Arabidopsis thaliana genomic DNA,... 97 5e-19
CR382124_475(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 96 7e-19
CP000585_404(CP000585|pid:none) Ostreococcus lucimarinus CCE9901... 96 9e-19
(A2RUV5) RecName: Full=Probable ATP-dependent DNA helicase HFM1;... 94 3e-18
BC007577_1(BC007577|pid:none) Homo sapiens small nuclear ribonuc... 94 3e-18
AJ844618_1(AJ844618|pid:none) Homo sapiens partial mRNA for acti... 93 8e-18
CR936257_280(CR936257|pid:none) Natronomonas pharaonis DSM 2160 ... 89 1e-16
AF206248_1(AF206248|pid:none) Babesia microti strain MN1 serorea... 88 2e-16
CR382138_344(CR382138|pid:none) Debaryomyces hansenii strain CBS... 87 4e-16
CP001365_2475(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 86 1e-15
BC172050_1(BC172050|pid:none) Mus musculus HFM1, ATP-dependent D... 85 2e-15
DQ314493_11(DQ314493|pid:none) Haloquadratum walsbyi clone 2B08 ... 84 5e-15
CP001140_713(CP001140|pid:none) Desulfurococcus kamchatkensis 12... 84 5e-15
AK302582_1(AK302582|pid:none) Homo sapiens cDNA FLJ50297 complet... 83 8e-15
AM180088_47(AM180088|pid:none) Haloquadratum walsbyi DSM 16790 c... 82 1e-14
AM494969_156(AM494969|pid:none) Leishmania braziliensis chromoso... 76 8e-13
AK294754_1(AK294754|pid:none) Homo sapiens cDNA FLJ50147 complet... 75 2e-12
CP001402_267(CP001402|pid:none) Sulfolobus islandicus M.16.4, co... 75 2e-12
CP001400_249(CP001400|pid:none) Sulfolobus islandicus M.14.25, c... 73 6e-12
(Q97VY9) RecName: Full=Putative ski2-type helicase; EC=... 73 6e-12
(Q3IU46) RecName: Full=Putative ski2-type helicase; EC=... 73 8e-12
DQ372941_8(DQ372941|pid:none) Methanococcus voltae enolase (MVO1... 73 8e-12
(A6UN73) RecName: Full=Putative ski2-type helicase; EC=... 72 1e-11
CP001404_2561(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51... 70 4e-11
CR380954_328(CR380954|pid:none) Candida glabrata strain CBS138 c... 70 4e-11
(O73946) RecName: Full=Putative ski2-type helicase; EC=... 70 5e-11
(A7IB61) RecName: Full=Putative ski2-type helicase; EC=... 70 7e-11
CP000867_1750(CP000867|pid:none) Methanococcus maripaludis C6, c... 69 1e-10
CP000575_208(CP000575|pid:none) Staphylothermus marinus F1, comp... 69 1e-10
CP000254_2385(CP000254|pid:none) Methanospirillum hungatei JF-1,... 69 1e-10
(Q9YFQ8) RecName: Full=Putative ski2-type helicase; EC=... 69 2e-10
CP000816_1279(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, c... 69 2e-10
(B0R7Q2) RecName: Full=Putative ski2-type helicase; EC=... 69 2e-10
CP000609_691(CP000609|pid:none) Methanococcus maripaludis C5, co... 69 2e-10
CP000477_786(CP000477|pid:none) Methanosaeta thermophila PT, com... 68 2e-10
EU016599_11(EU016599|pid:none) Uncultured Group I marine crenarc... 68 2e-10
(Q9V0A9) RecName: Full=Putative ski2-type helicase; EC=... 68 2e-10
CP000820_6585(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 68 2e-10
EU016632_32(EU016632|pid:none) Uncultured Group I marine crenarc... 67 4e-10
CP000745_135(CP000745|pid:none) Methanococcus maripaludis C7, co... 67 5e-10
CP001398_871(CP001398|pid:none) Thermococcus gammatolerans EJ3, ... 66 8e-10
CP000855_1350(CP000855|pid:none) Thermococcus onnurineus NA1, co... 66 8e-10
CP000559_1734(CP000559|pid:none) Methanocorpusculum labreanum Z,... 66 1e-09
(Q4JC00) RecName: Full=Putative ski2-type helicase; EC=... 65 2e-09
(O59025) RecName: Full=Putative ski2-type helicase; EC=... 65 2e-09
CP000682_1355(CP000682|pid:none) Metallosphaera sedula DSM 5348,... 65 2e-09
E72775(E72775)probable helicase APE0191 - Aeropyrum pernix (stra... 65 2e-09
CP000033_448(CP000033|pid:none) Lactobacillus acidophilus NCFM, ... 65 2e-09
(Q5JGV6) RecName: Full=Putative ski2-type helicase; EC=... 64 4e-09
CP000102_99(CP000102|pid:none) Methanosphaera stadtmanae DSM 309... 63 7e-09
(Q0W6L1) RecName: Full=Putative ski2-type helicase; EC=... 63 9e-09
(Q58524) RecName: Full=Putative ski2-type helicase; EC=... 63 9e-09
BA000001_1370(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, ... 62 1e-08
(Q974S1) RecName: Full=Putative ski2-type helicase; EC=... 62 1e-08
AE009441_614(AE009441|pid:none) Pyrobaculum aerophilum str. IM2,... 62 2e-08
CP000562_2487(CP000562|pid:none) Methanoculleus marisnigri JR1, ... 62 2e-08
AE009439_111(AE009439|pid:none) Methanopyrus kandleri AV19, comp... 61 3e-08
AK096330_1(AK096330|pid:none) Homo sapiens cDNA FLJ39011 fis, cl... 60 6e-08
CP000319_1899(CP000319|pid:none) Nitrobacter hamburgensis X14, c... 60 6e-08
CP000492_2148(CP000492|pid:none) Chlorobium phaeobacteroides DSM... 60 6e-08
CP000031_3028(CP000031|pid:none) Ruegeria pomeroyi DSS-3, comple... 60 7e-08
CP001348_938(CP001348|pid:none) Clostridium cellulolyticum H10, ... 60 7e-08
CP000744_4384(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 60 7e-08
B97419(B97419)probable ATP-dependent helicase mj0294 [imported] ... 60 7e-08
AC2637(AC2637) large atp-dependant helicase-related protein [imp... 60 7e-08
AM180088_8(AM180088|pid:none) Haloquadratum walsbyi DSM 16790 co... 59 1e-07
CP001037_3083(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 59 1e-07
CP000412_1099(CP000412|pid:none) Lactobacillus delbrueckii subsp... 59 1e-07
BA000002_1431(BA000002|pid:none) Aeropyrum pernix K1 DNA, comple... 59 1e-07
CR954253_1315(CR954253|pid:none) Lactobacillus delbrueckii subsp... 59 1e-07
CP000117_3638(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 59 1e-07
AM087123_6(AM087123|pid:none) Acidianus filamentous virus 8, par... 59 2e-07
AM180088_650(AM180088|pid:none) Haloquadratum walsbyi DSM 16790 ... 58 2e-07
AP008230_672(AP008230|pid:none) Desulfitobacterium hafniense Y51... 57 4e-07
CP001404_706(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51,... 57 4e-07
AE007869_480(AE007869|pid:none) Agrobacterium tumefaciens str. C... 57 4e-07
AY714837_24(AY714837|pid:none) Uncultured archaeon GZfos24D9 clo... 57 5e-07
AE017282_1489(AE017282|pid:none) Methylococcus capsulatus str. B... 57 5e-07
CP001365_1195(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 57 5e-07
AM087122_4(AM087122|pid:none) Acidianus filamentous virus 7, par... 57 5e-07
AY714861_9(AY714861|pid:none) Uncultured archaeon GZfos34H10 clo... 57 6e-07
AD2222(AD2222) ATP-dependent helicase [imported] - Nostoc sp. (s... 56 8e-07
(P95949) RecName: Full=Uncharacterized ATP-dependent helicase SS... 56 8e-07
BX649197_32(BX649197|pid:none) uncultured archaeon clone 0418F12... 56 8e-07
CP000250_2535(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 56 1e-06
BX649525_3(BX649525|pid:none) Zebrafish DNA sequence from clone ... 56 1e-06
CP001400_1862(CP001400|pid:none) Sulfolobus islandicus M.14.25, ... 56 1e-06
CP001399_2011(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 56 1e-06
CP001016_367(CP001016|pid:none) Beijerinckia indica subsp. indic... 56 1e-06
CP001338_2002(CP001338|pid:none) Candidatus Methanosphaerula pal... 56 1e-06
CP001401_1929(CP001401|pid:none) Sulfolobus islandicus M.16.27, ... 56 1e-06
AM087121_9(AM087121|pid:none) Acidianus filamentous virus 6, par... 56 1e-06
CP000660_110(CP000660|pid:none) Pyrobaculum arsenaticum DSM 1351... 55 1e-06
(O26901) RecName: Full=Putative ski2-type helicase; EC=... 55 1e-06
BC082601_1(BC082601|pid:none) Mus musculus helicase, mus308-like... 55 2e-06
CT573326_1081(CT573326|pid:none) Pseudomonas entomophila str. L4... 55 2e-06
CP000464_34(CP000464|pid:none) Roseobacter denitrificans OCh 114... 55 2e-06
EU545650_10(EU545650|pid:none) Acidianus filamentous virus 9, co... 55 2e-06
CP000678_839(CP000678|pid:none) Methanobrevibacter smithii ATCC ... 55 2e-06
AK052427_1(AK052427|pid:none) Mus musculus 13 days embryo lung c... 55 2e-06
(Q2VPA6) RecName: Full=Helicase POLQ-like; EC=3.6.1.-; ... 55 2e-06
CP000884_5123(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 55 2e-06
AY338826_1(AY338826|pid:none) Homo sapiens DNA polymerase theta ... 55 2e-06
CP000562_1247(CP000562|pid:none) Methanoculleus marisnigri JR1, ... 54 3e-06
CP000816_191(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co... 54 3e-06
CP000413_1489(CP000413|pid:none) Lactobacillus gasseri ATCC 3332... 54 3e-06
CP001398_1575(CP001398|pid:none) Thermococcus gammatolerans EJ3,... 54 3e-06
AY074936_1(AY074936|pid:none) Mus musculus DNA polymerase theta ... 54 3e-06
CP000362_1970(CP000362|pid:none) Roseobacter denitrificans OCh 1... 54 4e-06
CP001400_1566(CP001400|pid:none) Sulfolobus islandicus M.14.25, ... 54 4e-06
CP001404_1008(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51... 54 5e-06
AP009384_109(AP009384|pid:none) Azorhizobium caulinodans ORS 571... 54 5e-06
(Q97AI2) RecName: Full=Putative ski2-type helicase; EC=... 54 5e-06
CP000254_571(CP000254|pid:none) Methanospirillum hungatei JF-1, ... 53 7e-06
AP006878_1016(AP006878|pid:none) Thermococcus kodakarensis KOD1 ... 53 9e-06
CP001404_1493(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51... 53 9e-06
A69140(A69140) ATP-dependent helicase - Methanobacterium thermoa... 53 9e-06
CP000682_54(CP000682|pid:none) Metallosphaera sedula DSM 5348, c... 53 9e-06
AM039952_2627(AM039952|pid:none) Xanthomonas campestris pv. vesi... 53 9e-06
CP001399_1200(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 53 9e-06
(Q8TDG4) RecName: Full=Helicase POLQ-like; EC=3.6.1.-; ... 52 1e-05
BC141524_1(BC141524|pid:none) Synthetic construct Homo sapiens c... 52 1e-05
CP001403_1788(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14... 52 1e-05
CP000561_1670(CP000561|pid:none) Pyrobaculum calidifontis JCM 11... 52 1e-05
AM236080_588(AM236080|pid:none) Rhizobium leguminosarum bv. vici... 52 1e-05
CP000912_747(CP000912|pid:none) Brucella suis ATCC 23445 chromos... 52 2e-05
CP000505_921(CP000505|pid:none) Thermofilum pendens Hrk 5, compl... 52 2e-05
CP000661_568(CP000661|pid:none) Rhodobacter sphaeroides ATCC 170... 52 2e-05
CP000504_1138(CP000504|pid:none) Pyrobaculum islandicum DSM 4184... 52 2e-05
CP000449_527(CP000449|pid:none) Maricaulis maris MCS10, complete... 52 2e-05
AE006641_357(AE006641|pid:none) Sulfolobus solfataricus P2, comp... 52 2e-05
CP001074_608(CP001074|pid:none) Rhizobium etli CIAT 652, complet... 52 2e-05
CP001034_1504(CP001034|pid:none) Natranaerobius thermophilus JW/... 52 2e-05
AE008918_463(AE008918|pid:none) Brucella melitensis 16M chromoso... 51 3e-05
CP000866_88(CP000866|pid:none) Nitrosopumilus maritimus SCM1, co... 51 3e-05
AE017224_382(AE017224|pid:none) Brucella abortus biovar 1 str. 9... 51 3e-05
AE008923_2409(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 51 3e-05
CP001140_1177(CP001140|pid:none) Desulfurococcus kamchatkensis 1... 51 3e-05
CP000908_3113(CP000908|pid:none) Methylobacterium extorquens PA1... 51 3e-05
CP001150_2015(CP001150|pid:none) Rhodobacter sphaeroides KD131 c... 51 3e-05
CP000394_902(CP000394|pid:none) Granulibacter bethesdensis CGDNI... 51 3e-05
CP000660_1502(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135... 51 3e-05
CP000264_986(CP000264|pid:none) Jannaschia sp. CCS1, complete ge... 50 4e-05
CP000319_238(CP000319|pid:none) Nitrobacter hamburgensis X14, co... 50 4e-05
CR378668_63(CR378668|pid:none) Photobacterium profundum SS9; seg... 50 4e-05
CP000559_507(CP000559|pid:none) Methanocorpusculum labreanum Z, ... 50 4e-05
CP000384_1257(CP000384|pid:none) Mycobacterium sp. MCS, complete... 50 4e-05
CP000301_3018(CP000301|pid:none) Rhodopseudomonas palustris BisB... 50 4e-05
AM180088_1816(AM180088|pid:none) Haloquadratum walsbyi DSM 16790... 50 4e-05
CP000701_87(CP000701|pid:none) Sphingomonas wittichii RW1 plasmi... 50 6e-05
BA000011_644(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA,... 50 6e-05
CP000270_2628(CP000270|pid:none) Burkholderia xenovorans LB400 c... 50 6e-05
CP000304_3381(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 50 6e-05
CP001398_577(CP001398|pid:none) Thermococcus gammatolerans EJ3, ... 50 6e-05
CP001359_1144(CP001359|pid:none) Anaeromyxobacter dehalogenans 2... 50 6e-05
CP000473_5766(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 50 6e-05
CP001398_648(CP001398|pid:none) Thermococcus gammatolerans EJ3, ... 50 8e-05
FN357476_26(FN357476|pid:none) Schistosoma mansoni genome sequen... 50 8e-05
CP000968_1294(CP000968|pid:none) Candidatus Korarchaeum cryptofi... 50 8e-05
CP000852_1842(CP000852|pid:none) Caldivirga maquilingensis IC-16... 50 8e-05
FN357328_24(FN357328|pid:none) Schistosoma mansoni genome sequen... 50 8e-05
CP000780_1672(CP000780|pid:none) Candidatus Methanoregula boonei... 50 8e-05
CP001365_264(CP001365|pid:none) Halorubrum lacusprofundi ATCC 49... 50 8e-05
CP000927_1446(CP000927|pid:none) Caulobacter sp. K31, complete g... 50 8e-05
CP001026_954(CP001026|pid:none) Burkholderia ambifaria MC40-6 ch... 50 8e-05
CP000505_1004(CP000505|pid:none) Thermofilum pendens Hrk 5, comp... 49 1e-04
CP000494_759(CP000494|pid:none) Bradyrhizobium sp. BTAi1, comple... 49 1e-04
CP000076_5452(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 49 1e-04
CP001131_3944(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 49 1e-04
CP000712_1086(CP000712|pid:none) Pseudomonas putida F1, complete... 49 1e-04
CP000271_2829(CP000271|pid:none) Burkholderia xenovorans LB400 c... 49 1e-04
CP001510_2394(CP001510|pid:none) Methylobacterium extorquens AM1... 49 1e-04
AM920689_1880(AM920689|pid:none) Xanthomonas campestris pv. camp... 49 1e-04
CP000504_612(CP000504|pid:none) Pyrobaculum islandicum DSM 4184,... 49 1e-04
CP001336_1554(CP001336|pid:none) Desulfitobacterium hafniense DC... 49 1e-04
AE015451_1052(AE015451|pid:none) Pseudomonas putida KT2440 compl... 49 1e-04
CP000284_1215(CP000284|pid:none) Methylobacillus flagellatus KT,... 49 1e-04
AE014296_1458(AE014296|pid:none) Drosophila melanogaster chromos... 49 1e-04
AP011115_6332(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 49 1e-04
EU900478_1(EU900478|pid:none) Escherichia coli strain TB182A pro... 49 2e-04
EU016623_11(EU016623|pid:none) Uncultured marine microorganism H... 49 2e-04
AL445064_259(AL445064|pid:none) Thermoplasma acidophilum complet... 49 2e-04
CU928145_1783(CU928145|pid:none) Escherichia coli 55989 chromoso... 49 2e-04
AP009240_1776(AP009240|pid:none) Escherichia coli SE11 DNA, comp... 49 2e-04
CP000800_1777(CP000800|pid:none) Escherichia coli E24377A, compl... 49 2e-04
CP000816_1339(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, c... 49 2e-04
AE005673_2027(AE005673|pid:none) Caulobacter crescentus CB15, co... 49 2e-04
CP000505_1339(CP000505|pid:none) Thermofilum pendens Hrk 5, comp... 49 2e-04
CP001196_223(CP001196|pid:none) Oligotropha carboxidovorans OM5 ... 49 2e-04
CP001014_1469(CP001014|pid:none) Thermoproteus neutrophilus V24S... 49 2e-04
CP000759_1283(CP000759|pid:none) Ochrobactrum anthropi ATCC 4918... 49 2e-04
AL591688_542(AL591688|pid:none) Sinorhizobium meliloti 1021 comp... 49 2e-04
CP000926_4323(CP000926|pid:none) Pseudomonas putida GB-1, comple... 49 2e-04
CU928160_1665(CU928160|pid:none) Escherichia coli IAI1 chromosom... 49 2e-04
BA000012_4344(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 48 2e-04
CP000680_3403(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 48 2e-04
CP000438_2307(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 48 2e-04
CP000489_410(CP000489|pid:none) Paracoccus denitrificans PD1222 ... 48 3e-04
AP007171_467(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 48 3e-04
BA000023_441(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA, ... 48 3e-04
CP000493_942(CP000493|pid:none) Hyperthermus butylicus DSM 5456,... 48 3e-04
CP001504_1383(CP001504|pid:none) Burkholderia glumae BGR1 chromo... 48 3e-04
CU458896_3622(CU458896|pid:none) Mycobacterium abscessus chromos... 47 4e-04
AY233333_19(AY233333|pid:none) Escherichia coli strain ECOR31 hi... 47 4e-04
AY280635_15(AY280635|pid:none) Uncultured bacterium clone pbiow ... 47 4e-04
AM747721_1310(AM747721|pid:none) Burkholderia cenocepacia J2315 ... 47 4e-04
CP001338_564(CP001338|pid:none) Candidatus Methanosphaerula palu... 47 4e-04
AE008923_1319(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 47 5e-04
BX248356_104(BX248356|pid:none) Corynebacterium diphtheriae grav... 47 5e-04
CP001359_3977(CP001359|pid:none) Anaeromyxobacter dehalogenans 2... 47 5e-04
EU900477_1(EU900477|pid:none) Escherichia coli strain 87-14 prob... 47 5e-04
CP001213_1308(CP001213|pid:none) Bifidobacterium animalis subsp.... 47 5e-04
CP001132_1962(CP001132|pid:none) Acidithiobacillus ferrooxidans ... 47 5e-04
CP000885_704(CP000885|pid:none) Clostridium phytofermentans ISDg... 47 5e-04
CP000959_152(CP000959|pid:none) Burkholderia cenocepacia MC0-3 c... 47 5e-04
AE008384_1917(AE008384|pid:none) Methanosarcina mazei strain Goe... 47 5e-04
(O27830) RecName: Full=Uncharacterized ATP-dependent helicase MT... 47 6e-04
CP000682_1728(CP000682|pid:none) Metallosphaera sedula DSM 5348,... 47 6e-04
CU928164_1396(CU928164|pid:none) Escherichia coli IAI39 chromoso... 47 6e-04
AP006878_765(AP006878|pid:none) Thermococcus kodakarensis KOD1 D... 46 8e-04
CP000605_467(CP000605|pid:none) Bifidobacterium longum DJO10A, c... 46 8e-04
CP000970_1483(CP000970|pid:none) Escherichia coli SMS-3-5, compl... 46 8e-04
AE017261_1380(AE017261|pid:none) Picrophilus torridus DSM 9790, ... 46 8e-04
CP001095_1126(CP001095|pid:none) Bifidobacterium longum subsp. i... 46 8e-04
AP008957_2099(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 46 8e-04
AE014295_394(AE014295|pid:none) Bifidobacterium longum NCC2705, ... 46 8e-04
CP000580_1282(CP000580|pid:none) Mycobacterium sp. JLS, complete... 46 8e-04
CP000946_1934(CP000946|pid:none) Escherichia coli ATCC 8739, com... 46 8e-04
CU928163_1912(CU928163|pid:none) Escherichia coli UMN026 chromos... 46 8e-04
(P30015) RecName: Full=Probable ATP-dependent helicase lhr; ... 46 8e-04
CP000802_1650(CP000802|pid:none) Escherichia coli HS, complete g... 46 8e-04
AJ748745_1(AJ748745|pid:none) Haloferax volcanii lhr gene for pu... 46 8e-04
CP000431_6212(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 46 8e-04
CP000852_95(CP000852|pid:none) Caldivirga maquilingensis IC-167,... 46 0.001
CP000571_1818(CP000571|pid:none) Burkholderia pseudomallei 668 c... 46 0.001
CP000556_320(CP000556|pid:none) Methylibium petroleiphilum PM1 p... 46 0.001
CP001110_167(CP001110|pid:none) Pelodictyon phaeoclathratiforme ... 46 0.001
CP000682_2075(CP000682|pid:none) Metallosphaera sedula DSM 5348,... 46 0.001
AM114193_1760(AM114193|pid:none) Uncultured methanogenic archaeo... 46 0.001
CP000511_1610(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 46 0.001
CP000656_4782(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 46 0.001
AJ248286_177(AJ248286|pid:none) Pyrococcus abyssi complete genom... 46 0.001
AC142095_23(AC142095|pid:none) Medicago truncatula clone mth2-14... 45 0.001
CP000441_371(CP000441|pid:none) Burkholderia ambifaria AMMD chro... 45 0.001
(Q57742) RecName: Full=Uncharacterized ATP-dependent helicase MJ... 45 0.001
AP006878_567(AP006878|pid:none) Thermococcus kodakarensis KOD1 D... 45 0.001
CP000085_1125(CP000085|pid:none) Burkholderia thailandensis E264... 45 0.002
AE009950_1051(AE009950|pid:none) Pyrococcus furiosus DSM 3638, c... 45 0.002
BA000001_1144(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, ... 45 0.002
CP000648_8(CP000648|pid:none) Klebsiella pneumoniae subsp. pneum... 45 0.002
CP001140_151(CP001140|pid:none) Desulfurococcus kamchatkensis 12... 45 0.002
BA000040_1148(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 45 0.002
CP001280_257(CP001280|pid:none) Methylocella silvestris BL2, com... 45 0.002
CP000249_3485(CP000249|pid:none) Frankia sp. CcI3, complete geno... 45 0.002
BA000023_1530(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,... 45 0.002
BA000037_269(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, chr... 44 0.003
CP000742_585(CP000742|pid:none) Methanococcus vannielii SB, comp... 44 0.003
AM408590_3330(AM408590|pid:none) Mycobacterium bovis BCG Pasteur... 44 0.003
CP001147_431(CP001147|pid:none) Thermodesulfovibrio yellowstonii... 44 0.003
AP010918_3321(AP010918|pid:none) Mycobacterium bovis BCG str. To... 44 0.003
AE014297_1625(AE014297|pid:none) Drosophila melanogaster chromos... 44 0.004
CU928158_1325(CU928158|pid:none) Escherichia fergusonii ATCC 354... 44 0.004
CP000088_59(CP000088|pid:none) Thermobifida fusca YX, complete g... 44 0.004
CT573213_5587(CT573213|pid:none) Frankia alni str. ACN14A chromo... 44 0.004
BT021359_1(BT021359|pid:none) Drosophila melanogaster LP14642 fu... 44 0.004
CP000774_453(CP000774|pid:none) Parvibaculum lavamentivorans DS-... 44 0.005
CP000504_944(CP000504|pid:none) Pyrobaculum islandicum DSM 4184,... 44 0.005
BA000023_161(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA, ... 44 0.005
AP009493_1760(AP009493|pid:none) Streptomyces griseus subsp. gri... 44 0.005
CP001618_2437(CP001618|pid:none) Beutenbergia cavernae DSM 12333... 43 0.007
CP001339_150(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, c... 43 0.007
AM849034_401(AM849034|pid:none) Clavibacter michiganensis subsp.... 43 0.007
AE017261_880(AE017261|pid:none) Picrophilus torridus DSM 9790, c... 43 0.007
CP000697_1590(CP000697|pid:none) Acidiphilium cryptum JF-5, comp... 43 0.007
CP000360_3765(CP000360|pid:none) Acidobacteria bacterium Ellin34... 43 0.007
CP001325_676(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 43 0.007
CP000589_356(CP000589|pid:none) Ostreococcus lucimarinus CCE9901... 43 0.009
AM420293_4989(AM420293|pid:none) Saccharopolyspora erythraea NRR... 43 0.009
BA000035_919(BA000035|pid:none) Corynebacterium efficiens YS-314... 43 0.009
CP000077_1391(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6... 43 0.009
CP000660_798(CP000660|pid:none) Pyrobaculum arsenaticum DSM 1351... 43 0.009
AY714844_5(AY714844|pid:none) Uncultured archaeon GZfos27A8 clon... 43 0.009
AM746676_7700(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 43 0.009
CP000463_726(CP000463|pid:none) Rhodopseudomonas palustris BisA5... 42 0.012
CP001230_466(CP001230|pid:none) Persephonella marina EX-H1, comp... 42 0.012
AP010904_2040(AP010904|pid:none) Desulfovibrio magneticus RS-1 D... 42 0.016
CP000816_1165(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, c... 42 0.016
AM910993_478(AM910993|pid:none) Plasmodium knowlesi strain H chr... 42 0.016
AM181176_5367(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 42 0.016
BA000030_2506(BA000030|pid:none) Streptomyces avermitilis MA-468... 42 0.016
CP001014_1301(CP001014|pid:none) Thermoproteus neutrophilus V24S... 42 0.016
CP000745_524(CP000745|pid:none) Methanococcus maripaludis C7, co... 42 0.016
CP000271_1835(CP000271|pid:none) Burkholderia xenovorans LB400 c... 42 0.021
CP000967_2994(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P... 42 0.021
BX950229_1284(BX950229|pid:none) Methanococcus maripaludis strai... 42 0.021
CP000094_5027(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 42 0.021
CP000088_710(CP000088|pid:none) Thermobifida fusca YX, complete ... 42 0.021
CP000685_1750(CP000685|pid:none) Flavobacterium johnsoniae UW101... 42 0.021
CP001139_1842(CP001139|pid:none) Vibrio fischeri MJ11 chromosome... 42 0.021
AE014295_265(AE014295|pid:none) Bifidobacterium longum NCC2705, ... 42 0.021
CP000552_859(CP000552|pid:none) Prochlorococcus marinus str. MIT... 42 0.021
AE009439_1035(AE009439|pid:none) Methanopyrus kandleri AV19, com... 41 0.027
CP000699_2773(CP000699|pid:none) Sphingomonas wittichii RW1, com... 41 0.027
CP001095_927(CP001095|pid:none) Bifidobacterium longum subsp. in... 41 0.027
AM494972_322(AM494972|pid:none) Leishmania braziliensis chromoso... 41 0.027
(Q09475) RecName: Full=Uncharacterized helicase C28H8.3; ... 41 0.027
CP000867_1514(CP000867|pid:none) Methanococcus maripaludis C6, c... 41 0.027
CP000854_1225(CP000854|pid:none) Mycobacterium marinum M, comple... 41 0.027
CP000513_162(CP000513|pid:none) Dichelobacter nodosus VCS1703A, ... 41 0.027
AM270070_26(AM270070|pid:none) Aspergillus niger contig An04c009... 41 0.027
AE004437_966(AE004437|pid:none) Halobacterium sp. NRC-1, complet... 41 0.027
BX950851_1570(BX950851|pid:none) Erwinia carotovora subsp. atros... 41 0.027
AC007258_8(AC007258|pid:none) Arabidopsis thaliana chromosome I ... 41 0.027
(O13799) RecName: Full=Uncharacterized helicase C17H9.02; ... 41 0.027
T17399(T17399) probable DEAH ATP-dependent helicase vrlS - Diche... 41 0.027
A88470(A88470)protein C28H8.3 [imported] - Caenorhabditis elegans 41 0.027
AM502254_370(AM502254|pid:none) Leishmania infantum chromosome 36. 41 0.027
CR936257_1991(CR936257|pid:none) Natronomonas pharaonis DSM 2160... 41 0.035
AM711867_1705(AM711867|pid:none) Clavibacter michiganensis subsp... 41 0.035
AE013598_1844(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K... 41 0.035
AK055595_1(AK055595|pid:none) Homo sapiens cDNA FLJ31033 fis, cl... 41 0.035
CT978603_1017(CT978603|pid:none) Synechococcus sp. RCC307 genomi... 41 0.035
CP000252_1511(CP000252|pid:none) Syntrophus aciditrophicus SB, c... 41 0.035
AM420293_1693(AM420293|pid:none) Saccharopolyspora erythraea NRR... 41 0.035
CT005272_310(CT005272|pid:none) Leishmania major strain Friedlin... 41 0.035
CP000825_813(CP000825|pid:none) Prochlorococcus marinus str. MIT... 40 0.046
DQ890022_227(DQ890022|pid:none) Paramecium bursaria Chlorella vi... 40 0.046
AY596297_844(AY596297|pid:none) Haloarcula marismortui ATCC 4304... 40 0.046
CP000438_1727(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 40 0.046
CR940353_330(CR940353|pid:none) Theileria annulata strain Ankara... 40 0.046
CP001472_1641(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 40 0.046
FM209186_1796(FM209186|pid:none) Pseudomonas aeruginosa LESB58 c... 40 0.046
BA000022_3094(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,... 40 0.046
AP009493_5873(AP009493|pid:none) Streptomyces griseus subsp. gri... 40 0.046
CP000099_1619(CP000099|pid:none) Methanosarcina barkeri str. Fus... 40 0.046
CP000866_1316(CP000866|pid:none) Nitrosopumilus maritimus SCM1, ... 40 0.060
CP000113_4358(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 40 0.060
AM039952_1393(AM039952|pid:none) Xanthomonas campestris pv. vesi... 40 0.060
AY596297_1006(AY596297|pid:none) Haloarcula marismortui ATCC 430... 40 0.060
CP000304_2605(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 40 0.060
AY147862_1(AY147862|pid:none) Mus musculus DNA polymerase theta ... 40 0.060
CP000559_754(CP000559|pid:none) Methanocorpusculum labreanum Z, ... 40 0.078
(Q5H9U9) RecName: Full=Probable ATP-dependent RNA helicase DDX60... 40 0.078
CP000667_1388(CP000667|pid:none) Salinispora tropica CNB-440, co... 40 0.078
CP000020_1810(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 40 0.078
CP000155_3951(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 40 0.078
CP000820_1202(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 40 0.078
CP000251_2084(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 40 0.078
FM178379_2189(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 39 0.10
AE000666_489(AE000666|pid:none) Methanothermobacter thermautotro... 39 0.10
CP000095_1814(CP000095|pid:none) Prochlorococcus marinus str. NA... 39 0.10
AC002062_20(AC002062|pid:none) Sequence of BAC F20P5 from Arabid... 39 0.10
CP000769_1708(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 39 0.10
AL939109_187(AL939109|pid:none) Streptomyces coelicolor A3(2) co... 39 0.10
AK316759_1(AK316759|pid:none) Arabidopsis thaliana AT1G70070 mRN... 39 0.10
EF101928_596(EF101928|pid:none) Acanthocystis turfacea Chlorella... 39 0.10
AE016814_107(AE016814|pid:none) Ashbya gossypii (= Eremothecium ... 39 0.10
CR931997_1212(CR931997|pid:none) Corynebacterium jeikeium K411 c... 39 0.10
AK099845_1(AK099845|pid:none) Oryza sativa Japonica Group cDNA c... 39 0.10
CP000910_70(CP000910|pid:none) Renibacterium salmoninarum ATCC 3... 39 0.10
AE017333_2247(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 39 0.10
(Q9P7T8) RecName: Full=Uncharacterized helicase C694.02; ... 39 0.13
(O67837) RecName: Full=ATP-dependent DNA helicase recG; ... 39 0.13
CP001131_1772(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 39 0.13
FN376190_1(FN376190|pid:none) Schistosoma mansoni genome sequenc... 39 0.13
AM746676_3974(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 39 0.13
AF387007_1(AF387007|pid:none) Arabidopsis thaliana Similar to Sy... 39 0.13
FN313906_1(FN313906|pid:none) Schistosoma japonicum isolate Anhu... 39 0.13
CP000585_487(CP000585|pid:none) Ostreococcus lucimarinus CCE9901... 39 0.13
CP001349_4572(CP001349|pid:none) Methylobacterium nodulans ORS 2... 39 0.13
AP008229_1770(AP008229|pid:none) Xanthomonas oryzae pv. oryzae M... 39 0.13
CU633750_1556(CU633750|pid:none) Cupriavidus taiwanensis str. LM... 39 0.13
CP000479_4105(CP000479|pid:none) Mycobacterium avium 104, comple... 39 0.13
CR954215_123(CR954215|pid:none) Ostreococcus tauri strain OTTH05... 39 0.17
AE2533(AE2533) hypothetical protein alr7552 [imported] - Nostoc ... 39 0.17
CP000036_1368(CP000036|pid:none) Shigella boydii Sb227, complete... 39 0.17
CP000828_3765(CP000828|pid:none) Acaryochloris marina MBIC11017,... 39 0.17
CP001096_870(CP001096|pid:none) Rhodopseudomonas palustris TIE-1... 39 0.17
CP001574_768(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 39 0.17
CP000850_1330(CP000850|pid:none) Salinispora arenicola CNS-205, ... 39 0.17
CP000158_599(CP000158|pid:none) Hyphomonas neptunium ATCC 15444,... 39 0.17
BA000030_6702(BA000030|pid:none) Streptomyces avermitilis MA-468... 39 0.17
T23922(T23922) hypothetical protein R05D11.4 - Caenorhabditis el... 39 0.17
CP000099_925(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 39 0.17
CP000155_3290(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 38 0.23
AY818711_1(AY818711|pid:none) Neurospora crassa FRQ-interacting ... 38 0.23
CP000562_1502(CP000562|pid:none) Methanoculleus marisnigri JR1, ... 38 0.23
AK230021_1(AK230021|pid:none) Arabidopsis thaliana mRNA for puta... 38 0.23
AE017344_500(AE017344|pid:none) Cryptococcus neoformans var. neo... 38 0.23
CP000678_112(CP000678|pid:none) Methanobrevibacter smithii ATCC ... 38 0.23
CP000488_837(CP000488|pid:none) Candidatus Ruthia magnifica str.... 38 0.23
CP000302_882(CP000302|pid:none) Shewanella denitrificans OS217, ... 38 0.30
CP000557_1371(CP000557|pid:none) Geobacillus thermodenitrificans... 38 0.30
AK125989_1(AK125989|pid:none) Homo sapiens cDNA FLJ44001 fis, cl... 38 0.30
CP000656_3180(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 38 0.30
AM420293_2215(AM420293|pid:none) Saccharopolyspora erythraea NRR... 38 0.30
EU126659_1(EU126659|pid:none) Sus scrofa DEAD/H (Asp-Glu-Ala-Asp... 38 0.30
AL161783_3(AL161783|pid:none) Human DNA sequence from clone RP11... 38 0.30
BC172061_1(BC172061|pid:none) Mus musculus HFM1, ATP-dependent D... 38 0.30
CP000589_270(CP000589|pid:none) Ostreococcus lucimarinus CCE9901... 38 0.30
AM420293_5017(AM420293|pid:none) Saccharopolyspora erythraea NRR... 38 0.30
AF038963_1(AF038963|pid:none) Homo sapiens RNA helicase (RIG-I) ... 38 0.30
CP000075_5114(CP000075|pid:none) Pseudomonas syringae pv. syring... 38 0.30
CU466930_211(CU466930|pid:none) Candidatus Cloacamonas acidamino... 38 0.30
CP000530_148(CP000530|pid:none) Polaromonas naphthalenivorans CJ... 38 0.30
CR954206_325(CR954206|pid:none) Ostreococcus tauri strain OTTH05... 38 0.30
CR954209_292(CR954209|pid:none) Ostreococcus tauri strain OTTH05... 38 0.30
CP000361_1302(CP000361|pid:none) Arcobacter butzleri RM4018, com... 37 0.39
CP000471_1631(CP000471|pid:none) Magnetococcus sp. MC-1, complet... 37 0.39
CP001365_1239(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 37 0.39
AP009256_1008(AP009256|pid:none) Bifidobacterium adolescentis AT... 37 0.39
BX548175_1925(BX548175|pid:none) Prochlorococcus marinus MIT9313... 37 0.39
CP000551_781(CP000551|pid:none) Prochlorococcus marinus str. AS9... 37 0.39
AP010904_4597(AP010904|pid:none) Desulfovibrio magneticus RS-1 D... 37 0.51
CR936257_1929(CR936257|pid:none) Natronomonas pharaonis DSM 2160... 37 0.51
AM910994_610(AM910994|pid:none) Plasmodium knowlesi strain H chr... 37 0.51
BX572595_176(BX572595|pid:none) Rhodopseudomonas palustris CGA00... 37 0.51
AP003416_15(AP003416|pid:none) Oryza sativa Japonica Group genom... 37 0.51
CP000266_1555(CP000266|pid:none) Shigella flexneri 5 str. 8401, ... 37 0.51
AC120539_28(AC120539|pid:none) Oryza sativa (japonica cultivar-g... 37 0.51
(Q6ATJ8) RecName: Full=DEAD-box ATP-dependent RNA helicase 16; ... 37 0.51
CP000113_972(CP000113|pid:none) Myxococcus xanthus DK 1622, comp... 37 0.51

>CP001577_153(CP001577|pid:none) Micromonas sp. RCC299 chromosome 12,
complete sequence.
Length = 2072

Score = 259 bits (661), Expect = 6e-68
Identities = 137/215 (63%), Positives = 164/215 (76%), Gaps = 1/215 (0%)
Frame = +3

Query: 3 PEWSRLPFEESGVKSLNRVQSKLFDCAFKTDNNLLLSAPTSSGKTNVAMLTILHEIGKNR 182
P+W++ F +G+KSLNRVQS++++ A + N+LL APT +GKTNVAMLTILHEIG +R
Sbjct: 384 PKWAQPAF--AGMKSLNRVQSQVYNTAMLSPENMLLCAPTGAGKTNVAMLTILHEIGLHR 441

Query: 183 DRDSGKIRLDAFKIVYIAPMKSLVQEMVGNFSKRLKSYGIVVNELTGDQSLTNKQISETQ 362
D G I AFKIVY+APMK+LV EMVGN RLK YGI V ELTGD SL+ QI +TQ
Sbjct: 442 KPD-GTIDTSAFKIVYVAPMKALVAEMVGNLGNRLKPYGINVRELTGDVSLSRSQIDDTQ 500

Query: 363 IIVTTPEKWDIITRKSGDRAYTQLVKXXXXXXXXXXXXXRGPVLECIVARTLRMIESTQQ 542
+IVTTPEKWDIITRKSGDR YTQLV+ RGPVLE IVART+R +E+TQ+
Sbjct: 501 VIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDSRGPVLESIVARTVRQVETTQE 560

Query: 543 MVRLVGLSATLPNYEDVATFLRVEPD-GVFYFDSS 644
MVRLVGLSATLPN+EDVA FLR+ P G+F FD+S
Sbjct: 561 MVRLVGLSATLPNFEDVAAFLRINPSKGLFVFDNS 595

Score = 110 bits (276), Expect = 3e-23
Identities = 63/200 (31%), Positives = 102/200 (51%), Gaps = 1/200 (0%)
Frame = +3

Query: 39 VKSLNRVQSKLFDCAFKTDNNLLLSAPTSSGKTNVAMLTILHEIGKNRDRDSGKIRLDAF 218
+K N VQ+++F C + TD+N L+ APT SGKT A IL + K K D
Sbjct: 1241 IKHFNPVQTQVFQCLYNTDDNALIGAPTGSGKTVCAEFAILRMLNK-----LNKNEADVV 1295

Query: 219 KIVYIAPMKSLVQEMVGNFSKRL-KSYGIVVNELTGDQSLTNKQISETQIIVTTPEKWDI 395
+ VY+AP L +E V ++S RL G+ V LTG+ + K + + Q+++ TP++WD+
Sbjct: 1296 RCVYMAPTPELARERVQDWSARLGDKLGLRVVSLTGETATDLKLLEKGQVVIATPQQWDV 1355

Query: 396 ITRKSGDRAYTQLVKXXXXXXXXXXXXXRGPVLECIVARTLRMIESTQQMVRLVGLSATL 575
I+R+ R Q V GP +E + +R + ++ +R+VGL +L
Sbjct: 1356 ISRRWKQRKNVQNVSLFIADELHLIGGAVGPTMEVVTSRMRYISSQLEKPIRIVGLCTSL 1415

Query: 576 PNYEDVATFLRVEPDGVFYF 635
N D+ ++ G+F F
Sbjct: 1416 ANARDLGEWIGASSHGLFNF 1435

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,092,517,044
Number of extensions: 21727926
Number of successful extensions: 42953
Number of sequences better than 10.0: 694
Number of HSP's gapped: 42266
Number of HSP's successfully gapped: 740
Length of query: 218
Length of database: 1,051,180,864
Length adjustment: 124
Effective length of query: 94
Effective length of database: 649,847,548
Effective search space: 61085669512
Effective search space used: 61085669512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.75 gvh: 0.52 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for Contig-U13249-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0