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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U13246-1
Contig ID Contig-U13246-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13246-1 (Contig-U13246-1Q) /CSM_Contig/Contig-U13246-1Q.Seq.d
ATATTAATATCTCACACACACTCACACAAGATAATTTATATAACTTAAAC
AAAACTTTTTTTTTTTAAANAATATTANAAATTATAACAATAGTAGTAAA
AATATAAAAAAAACAAAANGACAGGACACACAGGANATGTTTCACAAGTT
CAATTTCAACCAAAAACTATTATGGAGCAGCAAANACAATTTTCTCTGAT
AATCCATTAGGTTTAACATGNGGTATGGTTNGTCCAGTTAGTTCATTATG
TCAATATGGTTGTAATTTANCAGCANCAGAANAGGGACCAATCAATATTG
GNGGTCTTCAACAATTTGCCACTGAAGTATTCAAAAANATGAATATTCCA
CAAATTCGNGATCCATCCTTAACACCATTGAGTCAATTACCANNNNNNNN
N
Gap no gap
Contig length 401
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1196325
End point 1196716
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U13246
List of clone(s) 

est1=SHD726F,1,392
Translated Amino Acid sequence 
inishtltqdnlynlnktfff*xilxiitivvki*KKQXDRTHRXCFTSSISTKNYYGAA
XTIFSDNPLGLTXGMVXPVSSLCQYGCNLXAXEXGPINIGGLQQFATEVFKXMNIPQIRD
PSLTPLSQLPXXX
Translated Amino Acid sequence (All Frames) 
Frame A:
ilishthshkiiyit*tklfffkxyxkl*q***kykknkxtghtgxvsqvqfqpktimeq
qxqfsliih*v*hxvwxvqlvhyvnmvvixqxqxrdqsilxvfnnlplkyskx*ifhkfx
ihp*hh*vnyxxx


Frame B:
y*ylththtr*fi*lkqnffflxnixnynnssknikktkxqdtqxmfhkfnfnqkllwss
kxnfl**sirfnmxygxss*fimsiwl*fxsxrxgtnqywxsstich*siqkxeystnsx
silntiesitxxx


Frame C:
inishtltqdnlynlnktfff*xilxiitivvki*KKQXDRTHRXCFTSSISTKNYYGAA
XTIFSDNPLGLTXGMVXPVSSLCQYGCNLXAXEXGPINIGGLQQFATEVFKXMNIPQIRD
PSLTPLSQLPXXX
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13246-1 (Contig-U13246-1Q)
/CSM_Contig/Contig-U13246-1Q.Seq.d
         (401 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13246-1 (Contig-U13246-1Q) /CSM_Contig/Conti...   446  e-126
Contig-U11527-1 (Contig-U11527-1Q) /CSM_Contig/Conti...   398  e-111
Contig-U05107-1 (Contig-U05107-1Q) /CSM_Contig/Conti...    38  0.007
Contig-U12131-1 (Contig-U12131-1Q) /CSM_Contig/Conti...    36  0.028
Contig-U01530-1 (Contig-U01530-1Q) /CSM_Contig/Conti...    36  0.028
Contig-U12917-1 (Contig-U12917-1Q) /CSM_Contig/Conti...    32  0.43
Contig-U10782-1 (Contig-U10782-1Q) /CSM_Contig/Conti...    32  0.43
Contig-U14619-1 (Contig-U14619-1Q) /CSM_Contig/Conti...    30  1.7
Contig-U13978-1 (Contig-U13978-1Q) /CSM_Contig/Conti...    30  1.7
Contig-U13976-1 (Contig-U13976-1Q) /CSM_Contig/Conti...    30  1.7

>Contig-U13246-1 (Contig-U13246-1Q) /CSM_Contig/Contig-U13246-1Q.Seq.d
          Length = 401

 Score =  446 bits (225), Expect = e-126
 Identities = 267/273 (97%)
 Strand = Plus / Plus

                                                                       
Query: 120 gacaggacacacagganatgtttcacaagttcaatttcaaccaaaaactattatggagca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gacaggacacacagganatgtttcacaagttcaatttcaaccaaaaactattatggagca 179

                                                                       
Query: 180 gcaaanacaattttctctgataatccattaggtttaacatgnggtatggttngtccagtt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gcaaanacaattttctctgataatccattaggtttaacatgnggtatggttngtccagtt 239

                                                                       
Query: 240 agttcattatgtcaatatggttgtaatttancagcancagaanagggaccaatcaatatt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 agttcattatgtcaatatggttgtaatttancagcancagaanagggaccaatcaatatt 299

                                                                       
Query: 300 ggnggtcttcaacaatttgccactgaagtattcnnnnnnntgaatattccacaaattcgn 359
           |||||||||||||||||||||||||||||||||     | ||||||||||||||||||||
Sbjct: 300 ggnggtcttcaacaatttgccactgaagtattcaaaaanatgaatattccacaaattcgn 359

                                            
Query: 360 gatccatccttaacaccattgagtcaattacca 392
           |||||||||||||||||||||||||||||||||
Sbjct: 360 gatccatccttaacaccattgagtcaattacca 392


 Score =  109 bits (55), Expect = 2e-24
 Identities = 55/55 (100%)
 Strand = Plus / Plus

                                                                 
Query: 1  atattaatatctcacacacactcacacaagataatttatataacttaaacaaaac 55
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  atattaatatctcacacacactcacacaagataatttatataacttaaacaaaac 55


>Contig-U11527-1 (Contig-U11527-1Q) /CSM_Contig/Contig-U11527-1Q.Seq.d
          Length = 3034

 Score =  398 bits (201), Expect = e-111
 Identities = 231/246 (93%)
 Strand = Plus / Plus

                                                                       
Query: 147 agttcaatttcaaccaaaaactattatggagcagcaaanacaattttctctgataatcca 206
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 440 agttcaatttcaaccaaaaactattatggagcagcaaagacaattttctctgataatcca 499

                                                                       
Query: 207 ttaggtttaacatgnggtatggttngtccagttagttcattatgtcaatatggttgtaat 266
           |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 500 ttaggtttaacatgtggtatggtttgtccagttagttcattatgtcaatatggttgtaat 559

                                                                       
Query: 267 ttancagcancagaanagggaccaatcaatattggnggtcttcaacaatttgccactgaa 326
           ||| ||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 560 ttagcagcaacagaagagggaccaatcaatattggtggtcttcaacaatttgccactgaa 619

                                                                       
Query: 327 gtattcnnnnnnntgaatattccacaaattcgngatccatccttaacaccattgagtcaa 386
           ||||||       ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 620 gtattcaaaaagatgaatattccacaaattcgtgatccatccttaacaccattgagtcaa 679

                 
Query: 387 ttacca 392
           ||||||
Sbjct: 680 ttacca 685


 Score = 95.6 bits (48), Expect = 3e-20
 Identities = 55/56 (98%), Gaps = 1/56 (1%)
 Strand = Plus / Plus

                                                                  
Query: 1  atattaatat-ctcacacacactcacacaagataatttatataacttaaacaaaac 55
          |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 atattaatatgctcacacacactcacacaagataatttatataacttaaacaaaac 77


 Score = 60.0 bits (30), Expect = 2e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 120 gacaggacacacagganatgtttcacaagttca 152
           |||||||||||||||| ||||||||||||||||
Sbjct: 142 gacaggacacacaggagatgtttcacaagttca 174


>Contig-U05107-1 (Contig-U05107-1Q) /CSM_Contig/Contig-U05107-1Q.Seq.d
          Length = 305

 Score = 38.2 bits (19), Expect = 0.007
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 30  gataatttatataacttaaacaa 52
           |||||||||||||| ||||||||
Sbjct: 271 gataatttatataatttaaacaa 249


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2231
Number of Sequences: 6905
Number of extensions: 2231
Number of successful extensions: 243
Number of sequences better than 10.0: 68
length of query: 401
length of database: 5,674,871
effective HSP length: 16
effective length of query: 385
effective length of database: 5,564,391
effective search space: 2142290535
effective search space used: 2142290535
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12. 7
Homology vs DNA 
Query= Contig-U13246-1 (Contig-U13246-1Q) /CSM_Contig/Contig-U13246-1Q.Seq.d
         (401 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ393424) Dictyostelium discoideum cDNA clone:dds31d07, 5' ...   482   e-167  3
(BJ392857) Dictyostelium discoideum cDNA clone:dds29n03, 5' ...   426   e-132  3
(BJ393850) Dictyostelium discoideum cDNA clone:dds32i24, 5' ...   434   e-131  3
(AF545064) Dictyostelium discoideum dihydropyrimidine dehydr...   434   e-127  2
(BJ396101) Dictyostelium discoideum cDNA clone:dds41j10, 5' ...   434   e-121  2
(BJ426403) Dictyostelium discoideum cDNA clone:ddv58j20, 5' ...   434   e-117  1
(BJ422803) Dictyostelium discoideum cDNA clone:ddv47h04, 5' ...   434   e-117  1
(BJ422543) Dictyostelium discoideum cDNA clone:ddv46d07, 5' ...   434   e-117  1
(BJ418873) Dictyostelium discoideum cDNA clone:ddv34f07, 5' ...   434   e-117  1
(BJ394946) Dictyostelium discoideum cDNA clone:dds37h03, 5' ...   434   e-117  1
(BJ393698) Dictyostelium discoideum cDNA clone:dds32d09, 5' ...   434   e-117  1
(BJ366011) Dictyostelium discoideum cDNA clone:ddc37n07, 5' ...   434   e-117  1
(BJ418669) Dictyostelium discoideum cDNA clone:ddv33h17, 5' ...   426   e-117  2
(BJ393905) Dictyostelium discoideum cDNA clone:dds33g01, 5' ...   424   e-114  1
(BJ404133) Dictyostelium discoideum cDNA clone:dds27p11, 3' ...   418   e-113  1
(BJ425165) Dictyostelium discoideum cDNA clone:ddv54h19, 5' ...   337   e-106  3
(BJ339176) Dictyostelium discoideum cDNA clone:dda64m09, 5' ...   230   1e-95  4
(BJ396378) Dictyostelium discoideum cDNA clone:dds42p16, 5' ...   220   2e-94  4
(BJ395760) Dictyostelium discoideum cDNA clone:dds40f06, 5' ...   220   8e-94  4
(BJ391751) Dictyostelium discoideum cDNA clone:dds25e05, 5' ...   202   1e-82  4
(BJ371474) Dictyostelium discoideum cDNA clone:ddc58m01, 5' ...   115   8e-63  4
(BJ396525) Dictyostelium discoideum cDNA clone:dds43a06, 5' ...   111   3e-54  5
(BJ393537) Dictyostelium discoideum cDNA clone:dds31n14, 5' ...   220   3e-53  1
(BJ371371) Dictyostelium discoideum cDNA clone:ddc57a24, 5' ...   125   7e-49  4
(BJ396009) Dictyostelium discoideum cDNA clone:dds41d02, 5' ...   109   8e-49  4
(BJ367893) Dictyostelium discoideum cDNA clone:ddc44m16, 5' ...    94   2e-45  4
(BJ396589) Dictyostelium discoideum cDNA clone:dds43p01, 5' ...    60   2e-39  5
(BJ366398) Dictyostelium discoideum cDNA clone:ddc38h21, 5' ...   100   5e-26  2
(BJ367912) Dictyostelium discoideum cDNA clone:ddc44d24, 5' ...    90   1e-25  3
(BJ369919) Dictyostelium discoideum cDNA clone:ddc52b13, 5' ...    56   1e-22  3
(BJ396298) Dictyostelium discoideum cDNA clone:dds42m09, 5' ...   109   8e-20  1
(BJ393214) Dictyostelium discoideum cDNA clone:dds30d15, 5' ...    60   3e-16  3
(BJ366689) Dictyostelium discoideum cDNA clone:ddc39l19, 5' ...    78   3e-10  1
(DB738848) Apis mellifera head cDNA, RIKEN full-length enric...    54   2e-09  2
(DB743232) Apis mellifera head cDNA, RIKEN full-length enric...    54   2e-09  2
(FC759482) CBBN11476.fwd CBBN Lottia gigantea 3,4,5,6.5d Lar...    50   2e-05  2
(FE239523) CAPG541.fwd CAPG Naegleria gruberi amoeba stage N...    56   0.001  1
(FE231112) CAPG10215.fwd CAPG Naegleria gruberi amoeba stage...    56   0.001  1
(EE978536) P37320A FNM Bos taurus cDNA clone P3732 5', mRNA ...    48   0.001  2
(EV625158) LB01454.CR_I14 GC_BGC-14 Bos taurus cDNA clone IM...    48   0.001  2
(DN534621) 1367594 MARC 7BOV Bos taurus cDNA 5', mRNA sequence.    48   0.002  2
(EV669824) LB03435.CR_K08 GC_BGC-34 Bos taurus cDNA clone IM...    48   0.002  2
(DT807804) LB0172.CR_L24 GC_BGC-17 Bos taurus cDNA clone IMA...    48   0.002  2
(DV797434) Hw_loin_69_050829_D04 Bos taurus CF-24-HW loin cD...    48   0.003  2
(BX901917) Zebrafish DNA sequence from clone DKEY-32E10 in l...    48   0.24   1
(AC120198) Danio rerio strain Tue clone CH211-125B19, WORKIN...    48   0.24   1
(BM033191) kh64d03.y1 Ascaris suum female gonad GZ pAMP1 v2 ...    48   0.24   1
(AC092954) Homo sapiens 3 BAC RP11-368I23 (Roswell Park Canc...    38   0.43   3
(AC125652) Rattus norvegicus clone CH230-227C21, *** SEQUENC...    32   0.51   2
(AX346774) Sequence 1845 from Patent WO0200928.                    42   0.59   2
(AC046139) Homo sapiens chromosome 3 clone RP11-48N2, WORKIN...    38   0.79   2
(AC026080) Homo sapiens chromosome 3 clone RP11-368I23, WORK...    38   0.83   2
(DR925829) EST1117368 Aquilegia cDNA library Aquilegia formo...    46   0.94   1
(EG605250) GUTF098379G6 POSSUM_01-POSSUM-GUT-2KB Trichosurus...    42   1.3    2
(AC055759) Homo sapiens chromosome 3 clone CTC-284J2, WORKIN...    38   1.3    4
(AJ277662) Homo sapiens partial TUB gene for tubby (mouse) h...    38   3.2    2
(AL110505) Human chromosome 14 DNA sequence BAC R-816J8 of l...    42   3.5    2
(AC172743) Medicago truncatula chromosome 2 BAC clone mth2-2...    44   3.7    1
(AC132019) Rattus norvegicus clone CH230-290I23, WORKING DRA...    44   3.7    1
(AC123496) Rattus norvegicus clone CH230-104G16, *** SEQUENC...    44   3.7    1
(AC121660) Rattus norvegicus clone CH230-376N10, *** SEQUENC...    44   3.7    1
(AC113252) Rattus norvegicus clone CH230-323K10, *** SEQUENC...    44   3.7    1
(AC107509) Rattus norvegicus clone CH230-138E19, *** SEQUENC...    44   3.7    1
(CU855490) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.7    1
(AC223522) Bos taurus clone CH240-466O9, WORKING DRAFT SEQUE...    44   3.7    1
(AC223521) Bos taurus clone CH240-466M5, WORKING DRAFT SEQUE...    44   3.7    1
(AC170325) Bos taurus clone CH240-260J19, WORKING DRAFT SEQU...    44   3.7    1
(CR505559) mth4-39L3RM1 BAC end, cultivar Jemalong A17 of Me...    44   3.7    1
(BX972427) Reverse strand read from insert in 5'HPRT inserti...    44   3.7    1
(EB150862) 011115ABEA005592HT (ABEA) Royal Gala seedling lea...    44   3.7    1
(CN947877) 020805AVBC011944HT (AVBC) Royal Gala young shoot ...    44   3.7    1
(CN947154) 020801AVBC010696HT (AVBC) Royal Gala young shoot ...    44   3.7    1
(CN937189) 000306AVBB009740HT (AVBB) Royal Gala young shoot ...    44   3.7    1
(CN936621) 000305AVBB005240HT (AVBB) Royal Gala young shoot ...    44   3.7    1
(CN936084) 000304AVBB005877HT (AVBB) Royal Gala young shoot ...    44   3.7    1
(CN936060) 000304AVBB005827HT (AVBB) Royal Gala young shoot ...    44   3.7    1
(CN935963) 000303AVBB006376HT (AVBB) Royal Gala young shoot ...    44   3.7    1
(CN933725) 000122AVBB999086HT (AVBB) Royal Gala young shoot ...    44   3.7    1
(CN932057) 000428AFBC006889HT (AFBC) Royal Gala pre-opened f...    44   3.7    1
(CN907719) 021210ABLC999010HT (ABLC) Braeburn cell culture t...    44   3.7    1
(CN903864) 021031ABCA006245HT (ABCA) Royal Gala fruit stored...    44   3.7    1
(CN897732) 010701AAZA003563HT (AAZA) M9 xylem Malus x domest...    44   3.7    1
(CN897483) 010701AAZA003166HT (AAZA) M9 xylem Malus x domest...    44   3.7    1
(CN894485) 010625AAYA003133HT (AAYA) Royal Gala 126 DAFB fru...    44   3.7    1
(CN877399) 020829AARA011344HT (AARA) Royal Gala partially se...    44   3.7    1
(CN876990) 020815AARA010173HT (AARA) Royal Gala partially se...    44   3.7    1
(CN876411) 020814AARA009317HT (AARA) Royal Gala partially se...    44   3.7    1
(CN876076) 020813AARA008725HT (AARA) Royal Gala partially se...    44   3.7    1
(BP159900) Sus scrofa mRNA, clone:THY010038A06, 5' end, expr...    44   3.7    1
(EB247022) PEG003-C-230066-501 Normalized Pedal-Pleural Gang...    38   3.9    2
(EJ565103) 1092959702859 Global-Ocean-Sampling_GS-29-01-01-1...    40   4.4    2
(AC212433) Solanum lycopersicum chromosome 11 clone C11HBa00...    36   7.3    2
(AC006341) Arabidopsis thaliana chromosome 1 BAC F3O9 sequen...    38   7.9    2

>(BJ393424) Dictyostelium discoideum cDNA clone:dds31d07, 5' end,
           single read.
          Length = 392

 Score =  482 bits (243), Expect(3) = e-167
 Identities = 273/273 (100%)
 Strand = Plus / Plus


Query: 120 gacaggacacacagganatgtttcacaagttcaatttcaaccaaaaactattatggagca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gacaggacacacagganatgtttcacaagttcaatttcaaccaaaaactattatggagca 179


Query: 180 gcaaanacaattttctctgataatccattaggtttaacatgnggtatggttngtccagtt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gcaaanacaattttctctgataatccattaggtttaacatgnggtatggttngtccagtt 239


Query: 240 agttcattatgtcaatatggttgtaatttancagcancagaanagggaccaatcaatatt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 agttcattatgtcaatatggttgtaatttancagcancagaanagggaccaatcaatatt 299


Query: 300 ggnggtcttcaacaatttgccactgaagtattcaaaaanatgaatattccacaaattcgn 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ggnggtcttcaacaatttgccactgaagtattcaaaaanatgaatattccacaaattcgn 359


Query: 360 gatccatccttaacaccattgagtcaattacca 392
           |||||||||||||||||||||||||||||||||
Sbjct: 360 gatccatccttaacaccattgagtcaattacca 392

 Score =  109 bits (55), Expect(3) = e-167
 Identities = 55/55 (100%)
 Strand = Plus / Plus


Query: 1  atattaatatctcacacacactcacacaagataatttatataacttaaacaaaac 55
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  atattaatatctcacacacactcacacaagataatttatataacttaaacaaaac 55

 Score = 50.1 bits (25), Expect(3) = e-167
 Identities = 31/31 (100%)
 Strand = Plus / Plus


Query: 67 aaanaatattanaaattataacaatagtagt 97
          |||||||||||||||||||||||||||||||
Sbjct: 67 aaanaatattanaaattataacaatagtagt 97

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 324,648,464
Number of extensions: 18122734
Number of successful extensions: 1780591
Number of sequences better than 10.0: 93
Length of query: 401
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 378
Effective length of database: 93,106,754,628
Effective search space: 35194353249384
Effective search space used: 35194353249384
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7. 6
Homology vs Protein 
Query= Contig-U13246-1 (Contig-U13246-1Q) /CSM_Contig/Contig-U13246-1Q.Seq.d
         (401 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55FT1) RecName: Full=Dihydropyrimidine dehydrogenase [NADP+]; ...   134   7e-31
(Q8CHR6) RecName: Full=Dihydropyrimidine dehydrogenase [NADP+]; ...   116   2e-25
BC080003_1(BC080003|pid:none) Xenopus laevis MGC81821 protein, m...   116   2e-25
(Q12882) RecName: Full=Dihydropyrimidine dehydrogenase [NADP+]; ...   114   8e-25
A54718(A54718) dihydropyrimidine dehydrogenase (NADP) (EC 1.3.1....   114   8e-25
AK291217_1(AK291217|pid:none) Homo sapiens cDNA FLJ76825 complet...   114   8e-25
BC131778_1(BC131778|pid:none) Homo sapiens dihydropyrimidine deh...   114   8e-25
AL356457_2(AL356457|pid:none) Human DNA sequence from clone RP11...   114   8e-25
(Q5R895) RecName: Full=Dihydropyrimidine dehydrogenase [NADP+]; ...   112   3e-24
BC124687_1(BC124687|pid:none) Danio rerio zgc:153505, mRNA (cDNA...   110   1e-23
EU850441_1(EU850441|pid:none) Philodina roseola dihydrogenpyrimi...   110   2e-23
EU652316_1(EU652316|pid:none) Adineta vaga dihydrogenpyrimidine ...   109   3e-23
EU850439_1(EU850439|pid:none) Adineta vaga dihydrogenpyrimidine ...   109   3e-23
DQ027826_1(DQ027826|pid:none) Drosophila melanogaster suppressor...   106   3e-22
AE014298_1350(AE014298|pid:none) Drosophila melanogaster chromos...   106   3e-22
(A8XKG6) RecName: Full=Probable dihydropyrimidine dehydrogenase ...    99   3e-20
AK149426_1(AK149426|pid:none) Mus musculus adult male liver tumo...    99   6e-20
BC008379_1(BC008379|pid:none) Homo sapiens dihydropyrimidine deh...    97   1e-19
BC042543_1(BC042543|pid:none) Mus musculus dihydropyrimidine deh...    52   5e-06
CP000036_917(CP000036|pid:none) Shigella boydii Sb227, complete ...    51   1e-05
CP000243_2377(CP000243|pid:none) Escherichia coli UTI89, complet...    51   1e-05
(P76440) RecName: Full=Uncharacterized oxidoreductase yeiT;     ...    51   1e-05
(Q8X645) RecName: Full=Uncharacterized oxidoreductase yeiT;     ...    51   1e-05
CP000802_2159(CP000802|pid:none) Escherichia coli HS, complete g...    51   1e-05
CP000884_2852(CP000884|pid:none) Delftia acidovorans SPH-1, comp...    51   1e-05
AE014075_2610(AE014075|pid:none) Escherichia coli CFT073, comple...    51   1e-05
AE005674_2231(AE005674|pid:none) Shigella flexneri 2a str. 301, ...    51   1e-05
BA000012_1290(BA000012|pid:none) Mesorhizobium loti MAFF303099 D...    50   2e-05
CP000970_2223(CP000970|pid:none) Escherichia coli SMS-3-5, compl...    50   2e-05
CU928158_2146(CU928158|pid:none) Escherichia fergusonii ATCC 354...    50   2e-05
CP000800_2328(CP000800|pid:none) Escherichia coli E24377A, compl...    50   2e-05
CU928160_2167(CU928160|pid:none) Escherichia coli IAI1 chromosom...    50   2e-05
CU928164_2270(CU928164|pid:none) Escherichia coli IAI39 chromoso...    50   2e-05
CU928163_2439(CU928163|pid:none) Escherichia coli UMN026 chromos...    50   2e-05
CP000633_2509(CP000633|pid:none) Agrobacterium vitis S4 chromoso...    50   3e-05
AM286413_1(AM286413|pid:none) Halobacillus halophilus gltB2 gene...    49   4e-05
CP001138_2178(CP001138|pid:none) Salmonella enterica subsp. ente...    47   2e-04
CP000857_1475(CP000857|pid:none) Salmonella enterica subsp. ente...    47   2e-04
CP001113_2229(CP001113|pid:none) Salmonella enterica subsp. ente...    47   2e-04
(Q8ZNL8) RecName: Full=Uncharacterized oxidoreductase yeiT;     ...    47   2e-04
AP006627_3769(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c...    47   2e-04
(Q8Z5A6) RecName: Full=Uncharacterized oxidoreductase yeiT;     ...    47   2e-04
CP001120_2270(CP001120|pid:none) Salmonella enterica subsp. ente...    47   2e-04
CP001144_2315(CP001144|pid:none) Salmonella enterica subsp. ente...    47   2e-04
CP000362_2882(CP000362|pid:none) Roseobacter denitrificans OCh 1...    47   3e-04
CP000512_946(CP000512|pid:none) Acidovorax citrulli AAC00-1, com...    46   4e-04
AE014291_274(AE014291|pid:none) Brucella suis 1330 chromosome I,...    46   5e-04
CP000887_263(CP000887|pid:none) Brucella abortus S19 chromosome ...    46   5e-04
AE008917_1637(AE008917|pid:none) Brucella melitensis 16M chromos...    46   5e-04
CP001488_284(CP001488|pid:none) Brucella melitensis ATCC 23457 c...    46   5e-04
CP000872_271(CP000872|pid:none) Brucella canis ATCC 23365 chromo...    46   5e-04
CP000830_1355(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ...    45   6e-04
AF031406_1(AF031406|pid:none) Rhodobacter capsulatus NADPH depen...    45   8e-04
CP000264_2713(CP000264|pid:none) Jannaschia sp. CCS1, complete g...    44   0.001
BA000043_1421(BA000043|pid:none) Geobacillus kaustophilus HTA426...    44   0.001
CP000031_1740(CP000031|pid:none) Ruegeria pomeroyi DSS-3, comple...    44   0.001
AY236960_4(AY236960|pid:none) Brevibacillus agri strain NCHU1002...    44   0.001
CP000270_2988(CP000270|pid:none) Burkholderia xenovorans LB400 c...    44   0.002
CP001052_2632(CP001052|pid:none) Burkholderia phytofirmans PsJN ...    44   0.002
CP000744_541(CP000744|pid:none) Pseudomonas aeruginosa PA7, comp...    44   0.002
CP000040_248(CP000040|pid:none) Bacillus cereus E33L plasmid pE3...    44   0.002
CP001027_205(CP001027|pid:none) Burkholderia ambifaria MC40-6 ch...    43   0.003
CP000438_459(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA1...    43   0.003
AP009387_786(AP009387|pid:none) Burkholderia multivorans ATCC 17...    43   0.003
CP000378_1585(CP000378|pid:none) Burkholderia cenocepacia AU 105...    43   0.003
CP000150_131(CP000150|pid:none) Burkholderia sp. 383 chromosome ...    43   0.003
AE004091_441(AE004091|pid:none) Pseudomonas aeruginosa PAO1, com...    43   0.003
AM747722_736(AM747722|pid:none) Burkholderia cenocepacia J2315 c...    43   0.003
AE015451_3994(AE015451|pid:none) Pseudomonas putida KT2440 compl...    43   0.004
CT573326_3013(CT573326|pid:none) Pseudomonas entomophila str. L4...    43   0.004
CP000949_1832(CP000949|pid:none) Pseudomonas putida W619, comple...    43   0.004
CP000712_1777(CP000712|pid:none) Pseudomonas putida F1, complete...    43   0.004
CP001150_1529(CP001150|pid:none) Rhodobacter sphaeroides KD131 c...    42   0.005
CP000143_1792(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c...    42   0.005
CP000661_1438(CP000661|pid:none) Rhodobacter sphaeroides ATCC 17...    42   0.005
CP000076_2502(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c...    42   0.005
AE015927_698(AE015927|pid:none) Clostridium tetani E88, complete...    40   0.019
CP001080_527(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1...    37   0.16
CP001097_1926(CP001097|pid:none) Chlorobium limicola DSM 245, co...    37   0.28
CP000108_531(CP000108|pid:none) Chlorobium chlorochromatii CaD3,...    35   0.62
CP001229_786(CP001229|pid:none) Sulfurihydrogenibium azorense Az...    34   1.4
CP001087_3169(CP001087|pid:none) Desulfobacterium autotrophicum ...    34   1.8
CP000607_1460(CP000607|pid:none) Chlorobium phaeovibrioides DSM ...    34   1.8
CP000492_469(CP000492|pid:none) Chlorobium phaeobacteroides DSM ...    33   3.1
CP001111_63(CP001111|pid:none) Stenotrophomonas maltophilia R551...    32   5.2
AM743169_100(AM743169|pid:none) Stenotrophomonas maltophilia K27...    32   5.2
CP001108_427(CP001108|pid:none) Prosthecochloris aestuarii DSM 2...    32   5.2
CP001146_903(CP001146|pid:none) Dictyoglomus thermophilum H-6-12...    32   6.8
AP008229_158(AP008229|pid:none) Xanthomonas oryzae pv. oryzae MA...    32   6.8
CP000967_172(CP000967|pid:none) Xanthomonas oryzae pv. oryzae PX...    32   6.8
AM920689_36(AM920689|pid:none) Xanthomonas campestris pv. campes...    32   6.8
AM039952_36(AM039952|pid:none) Xanthomonas campestris pv. vesica...    32   6.8
AE008923_32(AE008923|pid:none) Xanthomonas axonopodis pv. citri ...    32   6.8
CP000393_1343(CP000393|pid:none) Trichodesmium erythraeum IMS101...    32   8.9
JC5184(JC5184) glutamate synthase (GOGAT) (EC 1.4.1.-) small cha...    32   8.9

>(Q55FT1) RecName: Full=Dihydropyrimidine dehydrogenase [NADP+];
                Short=DHPDHase;          Short=DPD;
           EC=1.3.1.2; AltName: Full=Dihydrouracil dehydrogenase;
           AltName: Full=Dihydrothymine dehydrogenase;
          Length = 1009

 Score =  134 bits (338), Expect = 7e-31
 Identities = 66/74 (89%), Positives = 66/74 (89%)
 Frame = +3

Query: 141 FTSSISTKNYYGAAXTIFSDNPLGLTXGMVXPVSSLCQYGCNLXAXEXGPINIGGLQQFA 320
           F SSISTKNYYGAA TIFSDNPLGLT GMV PVSSLCQYGCNL A E GPINIGGLQQFA
Sbjct: 99  FISSISTKNYYGAAKTIFSDNPLGLTCGMVCPVSSLCQYGCNLAATEEGPINIGGLQQFA 158

Query: 321 TEVFKXMNIPQIRD 362
           TEVFK MNIPQIRD
Sbjct: 159 TEVFKKMNIPQIRD 172

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 464,811,617
Number of extensions: 6113876
Number of successful extensions: 9068
Number of sequences better than 10.0: 95
Number of HSP's gapped: 9054
Number of HSP's successfully gapped: 95
Length of query: 133
Length of database: 1,051,180,864
Length adjustment: 98
Effective length of query: 35
Effective length of database: 733,998,082
Effective search space: 25689932870
Effective search space used: 25689932870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.89  gvh: 0.59  alm: 0.48  top: 0.50  tms: 0.00  mit: 0.41  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: mitochondrial
	 16.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for Contig-U13246-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0