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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U13236-1
Contig ID Contig-U13236-1
Contig update 2002.12.18
Contig sequence 
>Contig-U13236-1 (Contig-U13236-1Q) /CSM_Contig/Contig-U13236-1Q.Seq.d
NNNNNNNNNNACCAATAATAATAATAATACCCTTAGATCATCAATGTCTC
CTTCTCAATCCCCTTTGTCAATTGAATCAAATTTCAACAAATCTGGATCA
ATTGATAATAAAAATTAAAATTGATATATTAAAGGAGTGAATATAGTTTA
TATGAAGATCTTTATAAAGGTTATCCATTGCAATGTAAAACATGTTCAGC
TAGATTTAAAACTCAAGACAAAATGGATCAACACATGGACCATCATTATA
AAGTCAATCAAAGAATAAAGAAACGTGCTAAACATCCAATGTCAAGAGCT
TGGTATTTACCAGAAGAATCTTGGATAGGTTTTAAATTTGATCCATCCAT
CGATATCTCTGAGCAACCTTCAATTCCATTTTTTAATGATACCAAAAAAG
AAGTTGAAGTAAAGATCGAGCCAACATTGGTTGCTGATGATGATCAAACA
AGTTGTCCAGTATGTAGAGAAAAGTTTGAAAAGTTTTGGGATGGAGAGTC
GGAGGATTGGATGTATAGAGGAGTTCAAATTGATAATAAAACTAAAAAAA
TTATTCATGTTAAATGTGTTATTGATGAGAAACAGGTTTCACCTACTTCT
TCCCCAACTTCTTCTTCTTCCTCTTCTTCCTCACTATTATCACCAACATC
CTCTCTCAAAAGAGATAGTAGTCAATTAAATTCCAATCCTCAACCTATTA
T
Gap no gap
Contig length 701
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2226530
End point 2225836
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U13236
List of clone(s) 

est1=SHC713Z,1,692
Translated Amino Acid sequence 
xxxxq****yp*iinvsfsipfvn*ikfqqiwin***klkliy*RSEYSLYEDLYKGYPL
QCKTCSARFKTQDKMDQHMDHHYKVNQRIKKRAKHPMSRAWYLPEESWIGFKFDPSIDIS
EQPSIPFFNDTKKEVEVKIEPTLVADDDQTSCPVCREKFEKFWDGESEDWMYRGVQIDNK
TKKIIHVKCVIDEKQVSPTSSPTSSSSSSSSLLSPTSSLKRDSSQLNSNPQPI
Translated Amino Acid sequence (All Frames) 
Frame A:
xxxxq****yp*iinvsfsipfvn*ikfqqiwin***klkliy*RSEYSLYEDLYKGYPL
QCKTCSARFKTQDKMDQHMDHHYKVNQRIKKRAKHPMSRAWYLPEESWIGFKFDPSIDIS
EQPSIPFFNDTKKEVEVKIEPTLVADDDQTSCPVCREKFEKFWDGESEDWMYRGVQIDNK
TKKIIHVKCVIDEKQVSPTSSPTSSSSSSSSLLSPTSSLKRDSSQLNSNPQPI


Frame B:
xxxtnnnnntlrssmspsqsplsiesnfnksgsidnkn*n*yikgvnivymkifikvihc
nvkhvqldlklktkwintwtiiiksike*rnvlniqcqelgiyqknlg*vlnlihpsisl
snlqfhflmipkkklk*rssqhwllmmikqvvqyvekslksfgmesrrigcieefkliik
lkklfmlnvllmrnrfhlllpqllllpllphyyhqhplskeivvn*ipilnll


Frame C:
xxxpiiiiipldhqclllnplcqlnqistnldqliikikidilke*i*fi*rsl*rlsia
m*nmfs*i*nsrqngsthgpsl*sqsknketc*tsnvkslvftrrildrf*i*sihryl*
atfnsif**yqkrs*skdranigc***snklssm*rkv*kvlgwrvggldv*rssn***n
*knysc*mcy**etgftyffpnfffflffltiitnilsqkr**sikfqsstyy
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U13236-1 (Contig-U13236-1Q)
/CSM_Contig/Contig-U13236-1Q.Seq.d
         (701 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U13236-1 (Contig-U13236-1Q) /CSM_Contig/Conti...  1116  0.0
Contig-U00230-1 (Contig-U00230-1Q) /CSM_Contig/Conti...    42  8e-04
Contig-U10523-1 (Contig-U10523-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U14447-1 (Contig-U14447-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U13607-1 (Contig-U13607-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U13574-1 (Contig-U13574-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U12737-1 (Contig-U12737-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U12261-1 (Contig-U12261-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U12027-1 (Contig-U12027-1Q) /CSM_Contig/Conti...    34  0.19
Contig-U14822-1 (Contig-U14822-1Q) /CSM_Contig/Conti...    32  0.77

>Contig-U13236-1 (Contig-U13236-1Q) /CSM_Contig/Contig-U13236-1Q.Seq.d
          Length = 701

 Score = 1116 bits (563), Expect = 0.0
 Identities = 577/584 (98%)
 Strand = Plus / Plus

                                                                       
Query: 11  accaataataataataatacccttagatcatcaatgtctccttctcaatcccctttgtca 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  accaataataataataatacccttagatcatcaatgtctccttctcaatcccctttgtca 70

                                                                       
Query: 71  attgaatcaaatttcaacaaatctggatcaattgataataaaaattaaaattgatatatt 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  attgaatcaaatttcaacaaatctggatcaattgataataaaaattaaaattgatatatt 130

                                                                       
Query: 131 aaaggagtgaatatagtttatatgaagatctttataaaggttatccattgcaatgtaaaa 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 aaaggagtgaatatagtttatatgaagatctttataaaggttatccattgcaatgtaaaa 190

                                                                       
Query: 191 catgttcagctagatttaaaactcaagacaaaatggatcaacacatggaccatcattata 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 catgttcagctagatttaaaactcaagacaaaatggatcaacacatggaccatcattata 250

                                                                       
Query: 251 aagtcaatcaaagaataaagaaacgtgctaaacatccaatgtcaagagcttggtatttac 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aagtcaatcaaagaataaagaaacgtgctaaacatccaatgtcaagagcttggtatttac 310

                                                                       
Query: 311 cagaagaatcttggataggttttaaatttgatccatccatcgatatctctgagcaacctt 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cagaagaatcttggataggttttaaatttgatccatccatcgatatctctgagcaacctt 370

                                                                       
Query: 371 caattccattttttaatgataccaaaaaagaagttgaagtaaagatcgagccaacattgg 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 caattccattttttaatgataccaaaaaagaagttgaagtaaagatcgagccaacattgg 430

                                                                       
Query: 431 ttgctgatgatgatcaaacaagttgtccagtatgtagagaaaagtttgaaaagttttggg 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttgctgatgatgatcaaacaagttgtccagtatgtagagaaaagtttgaaaagttttggg 490

                                                                       
Query: 491 atggagagtcggaggattggatgtatagaggagttcaaattgataataaaactnnnnnnn 550
           |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 491 atggagagtcggaggattggatgtatagaggagttcaaattgataataaaactaaaaaaa 550

                                                       
Query: 551 ttattcatgttaaatgtgttattgatgagaaacaggtttcacct 594
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ttattcatgttaaatgtgttattgatgagaaacaggtttcacct 594


 Score =  143 bits (72), Expect = 3e-34
 Identities = 72/72 (100%)
 Strand = Plus / Plus

                                                                       
Query: 630 ctcactattatcaccaacatcctctctcaaaagagatagtagtcaattaaattccaatcc 689
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ctcactattatcaccaacatcctctctcaaaagagatagtagtcaattaaattccaatcc 689

                       
Query: 690 tcaacctattat 701
           ||||||||||||
Sbjct: 690 tcaacctattat 701


>Contig-U00230-1 (Contig-U00230-1Q) /CSM_Contig/Contig-U00230-1Q.Seq.d
          Length = 1754

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 370 tcaattccattttttaatgat 390
           |||||||||||||||||||||
Sbjct: 822 tcaattccattttttaatgat 802


>Contig-U10523-1 (Contig-U10523-1Q) /CSM_Contig/Contig-U10523-1Q.Seq.d
          Length = 548

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 107 aataaaaattaaaattgata 126
           ||||||||||||||||||||
Sbjct: 306 aataaaaattaaaattgata 287


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,897
Number of Sequences: 6905
Number of extensions: 27897
Number of successful extensions: 12176
Number of sequences better than 10.0: 1589
length of query: 701
length of database: 5,674,871
effective HSP length: 16
effective length of query: 685
effective length of database: 5,564,391
effective search space: 3811607835
effective search space used: 3811607835
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 7
Homology vs DNA 
Query= Contig-U13236-1 (Contig-U13236-1Q) /CSM_Contig/Contig-U13236-1Q.Seq.d
         (701 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ404627) Dictyostelium discoideum cDNA clone:dds29j03, 3' ...  1057   0.0    3
(DQ157485) Dircenna dero voucher RB305 cytochrome oxidase su...    44   0.053  3
(EJ489866) 1095403530767 Global-Ocean-Sampling_GS-28-01-01-1...    40   0.16   3
(BY723415) Mus musculus 16 days neonate thymus cDNA, RIKEN f...    36   0.23   2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    34   0.25   2
(AL096782) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    34   0.30   6
(AU033461) Dictyostelium discoideum slug cDNA, clone SLA854.       34   0.34   2
(C93307) Dictyostelium discoideum slug cDNA, clone SSM605.         34   0.34   2
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4...    40   0.35   7
(AC121235) Medicago truncatula clone mth2-21k24, complete se...    44   0.36   4
(AP006663) Lotus japonicus genomic DNA, chromosome 1, clone:...    48   0.45   1
(AP010290) Lotus japonicus genomic DNA, chromosome 1, clone:...    48   0.45   1
(AC169003) Callicebus moloch clone LB5-255N14, WORKING DRAFT...    48   0.45   1
(CU595535) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.46   3
(AM485423) Vitis vinifera contig VV78X110157.5, whole genome...    34   0.48   4
(AC130800) Medicago truncatula clone mth2-36b7, complete seq...    40   0.50   4
(BJ400432) Dictyostelium discoideum cDNA clone:dds13d07, 3' ...    36   0.52   2
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    40   0.54   3
(AC209000) Populus trichocarpa clone POP023-H09, complete se...    40   0.57   6
(AC146182) Pan troglodytes BAC clone CH251-540L24 from Y, co...    38   0.72   4
(AC168655) Strongylocentrotus purpuratus clone R3-3017A19, W...    36   0.73   6
(CB932759) rj06h05.y1 Meloidogyne chitwoodi egg pAMP1 v1 Mel...    36   0.74   2
(AM664530) Entamoeba moshkovskii FIC GSS, clone mosh069g09.q1k.    32   0.83   3
(AC152919) Medicago truncatula clone mth2-21g11, complete se...    42   0.90   4
(AC176332) Strongylocentrotus purpuratus clone R3-3053J2, WO...    36   0.95   2
(DV602340) EST1205335 Glossina morsitans morsitans Fat body ...    36   0.97   2
(DV602341) EST1205336 Glossina morsitans morsitans Fat body ...    36   1.0    2
(AC215886) Mus musculus chromosome Y clone RP24-265A5, WORKI...    34   1.0    8
(DV609978) EST1212974 Glossina morsitans morsitans Fat body ...    36   1.0    2
(DV608396) EST1211392 Glossina morsitans morsitans Fat body ...    36   1.0    2
(DV607263) EST1210259 Glossina morsitans morsitans Fat body ...    36   1.0    2
(AM482690) Vitis vinifera, whole genome shotgun sequence, co...    38   1.0    4
(AC174352) Medicago truncatula chromosome 8 clone mth2-7o1, ...    36   1.0    6
(AK137951) Mus musculus 16 days neonate thymus cDNA, RIKEN f...    36   1.0    2
(DX478731) Cpl21022 Papaya Genomic DNA BAC Library Carica pa...    36   1.1    2
(DV607262) EST1210258 Glossina morsitans morsitans Fat body ...    36   1.2    2
(DV617330) EST1220326 Glossina morsitans morsitans Fat body ...    36   1.2    2
(AC134747) Rattus norvegicus clone CH230-354L3, WORKING DRAF...    36   1.2    6
(CT702595) Danio rerio EST, clone ZF_mu_196d18 5'.                 32   1.2    3
(AL376923) Medicago truncatula EST MtBB27C10F1 : T3 end of c...    36   1.3    2
(BX560050) Glossina morsitans morsitans (Tseatse fly) EST fr...    36   1.3    2
(AL376924) Medicago truncatula EST MtBB27C10R1 : T7 end of c...    36   1.3    2
(AC098285) Rattus norvegicus clone CH230-1H9, *** SEQUENCING...    36   1.3    7
(CR385030) Zebrafish DNA sequence from clone DKEY-114E9.           36   1.3    4
(DY895110) CeleSEQ14851 Cunninghamella elegans pBluescript (...    32   1.4    3
(AC216915) Populus trichocarpa clone POP038-J17, complete se...    34   1.6    6
(AC147538) Medicago truncatula clone mth2-135c7, complete se...    42   1.6    4
(AC180547) Strongylocentrotus purpuratus clone R3-3096O15, W...    36   1.7    4
(AF016021) Cyphomyrmex cf. rimosus TS-1997b cytochrome oxida...    46   1.8    1
(AC185051) Bos taurus clone CH240-263B8, WORKING DRAFT SEQUE...    46   1.8    1
(EK185063) 1095458140774 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.8    1
(EI244829) OR__Ba0045D08.f OR__Ba Oryza rufipogon genomic cl...    46   1.8    1
(DU535503) OO__Ba0006A15.f OO__Ba Oryza officinalis genomic ...    46   1.8    1
(CT587678) Danio rerio EST, clone ZF_mu_29n07 5'.                  46   1.8    1
(CB333957) Mg_AFT_14C08_M13F Mesobuthus gibbosus adult femal...    46   1.8    1
(AL772145) Mouse DNA sequence from clone RP23-212H4 on chrom...    40   1.8    4
(CR954186) Medicago truncatula chromosome 5 clone mth2-117e1...    42   1.9    2
(AC114261) Dictyostelium discoideum chromosome 2 map 126059-...    36   2.0    4
(CT737180) M.truncatula DNA sequence from clone MTH2-117L19 ...    42   2.1    2
(CA919723) EST637441 MTUS Medicago truncatula cDNA clone MTU...    36   2.1    2
(AC098970) Homo sapiens chromosome 3 clone RP11-30G4, comple...    36   2.3    4
(CR847515) Zebrafish DNA sequence from clone DKEYP-60A7 in l...    42   2.3    4
(AC173720) Strongylocentrotus purpuratus clone R3-1008M14, W...    38   2.4    5
(AY858561) Hermeuptychia hermes isolate CTBEH142 cytochrome ...    36   2.6    2
(AP009601) Solanum lycopersicum DNA, chromosome 8, clone: C0...    40   2.6    5
(BQ164926) EST610795 KVKC Medicago truncatula cDNA clone pKV...    36   2.6    2
(AY858562) Hermeuptychia hermes isolate CTBEH144 cytochrome ...    36   2.7    2
(CU442744) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   2.7    2
(AY858563) Hermeuptychia hermes isolate CTBEH148 cytochrome ...    36   2.7    2
(AM478312) Vitis vinifera contig VV78X242359.2, whole genome...    40   2.7    2
(AC097062) Homo sapiens chromosome 1 clone RP11-428D12, comp...    44   2.9    2
(EH015136) USDA-FP_182377 Lysiphlebus testaceipes adult whol...    38   2.9    2
(AC148602) Medicago truncatula chromosome 6 clone mth2-108p9...    36   3.0    4
(CU582948) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   3.1    6
(EI336520) GM_WBc0078J24.r GM_WBc Glycine max genomic clone ...    38   3.1    2
(AJ002383) Dictyostelium discoideum mybB gene.                     36   3.2    2
(FI184900) MUGQ_CH252P016O03T7_GL300_050 CHORI-252 Vervet Mo...    34   3.2    2
(BX537280) Zebrafish DNA sequence from clone DKEY-228C11 in ...    34   3.2    6
(AG209077) Oryza sativa Japonica Group DNA, clone:NE5011_0_4...    34   3.3    2
(AC127061) Rattus norvegicus clone CH230-146N12, *** SEQUENC...    36   3.3    3
(AC140924) Mus musculus BAC clone RP24-249B5 from Y, complet...    34   3.4    8
(AL161851) Human chromosome 14 DNA sequence BAC R-1078I14 of...    32   3.4    2
(AL159988) Human DNA sequence from clone RP11-480M11 on chro...    36   3.4    4
(AC153094) Ornithorhynchus anatinus clone OA_Bb-552J8, WORKI...    42   3.5    3
(AC110885) Mus musculus chromosome 7, clone RP24-342P18, com...    40   3.5    3
(CU179759) Zebrafish DNA sequence from clone CH73-97A24 in l...    36   3.6    4
(AC153531) Mus musculus 10 BAC RP23-22C3 (Roswell Park Cance...    38   3.6    4
(FC760285) CBBN11976.fwd CBBN Lottia gigantea 3,4,5,6.5d Lar...    42   3.6    2
(EX192666) gmapht_0035j18.pDNRm13r Gadus morhua heart librar...    34   3.7    2
(AC181228) Strongylocentrotus purpuratus clone R3-115L15, WO...    36   3.7    6
(AV756150) Homo sapiens cDNA clone:BMFAQE02, 5'end, expresse...    36   3.7    2
(AC211030) Solanum lycopersicum chromosome 6 clone C06HBa004...    34   3.7    6
(EL618001) gmnbbrts_0006e21.pDNRm13r Gadus morhua brain ther...    34   3.7    2
(CA921219) EST638937 MTUS Medicago truncatula cDNA clone MTU...    36   3.8    2
(FI176011) MUGQ_CH252P300G16Sp6_CP477_058 CHORI-252 Vervet M...    34   3.8    2
(AC229689) Medicago truncatula clone mth2-177k14, WORKING DR...    40   3.9    2
(EJ527918) 1092955201654 Global-Ocean-Sampling_GS-29-01-01-1...    38   3.9    2
(AC150658) Mus musculus BAC clone RP24-474E20 from chromosom...    34   4.1    5
(AC182648) Solanum lycopersicum chromosome 5 clone C05HBa023...    34   4.3    5
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    38   4.5    3

>(BJ404627) Dictyostelium discoideum cDNA clone:dds29j03, 3' end,
           single read.
          Length = 692

 Score = 1057 bits (533), Expect(3) = 0.0
 Identities = 533/533 (100%)
 Strand = Plus / Minus


Query: 11  accaataataataataatacccttagatcatcaatgtctccttctcaatcccctttgtca 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 accaataataataataatacccttagatcatcaatgtctccttctcaatcccctttgtca 633


Query: 71  attgaatcaaatttcaacaaatctggatcaattgataataaaaattaaaattgatatatt 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 attgaatcaaatttcaacaaatctggatcaattgataataaaaattaaaattgatatatt 573


Query: 131 aaaggagtgaatatagtttatatgaagatctttataaaggttatccattgcaatgtaaaa 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aaaggagtgaatatagtttatatgaagatctttataaaggttatccattgcaatgtaaaa 513


Query: 191 catgttcagctagatttaaaactcaagacaaaatggatcaacacatggaccatcattata 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 catgttcagctagatttaaaactcaagacaaaatggatcaacacatggaccatcattata 453


Query: 251 aagtcaatcaaagaataaagaaacgtgctaaacatccaatgtcaagagcttggtatttac 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aagtcaatcaaagaataaagaaacgtgctaaacatccaatgtcaagagcttggtatttac 393


Query: 311 cagaagaatcttggataggttttaaatttgatccatccatcgatatctctgagcaacctt 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cagaagaatcttggataggttttaaatttgatccatccatcgatatctctgagcaacctt 333


Query: 371 caattccattttttaatgataccaaaaaagaagttgaagtaaagatcgagccaacattgg 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 caattccattttttaatgataccaaaaaagaagttgaagtaaagatcgagccaacattgg 273


Query: 431 ttgctgatgatgatcaaacaagttgtccagtatgtagagaaaagtttgaaaagttttggg 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ttgctgatgatgatcaaacaagttgtccagtatgtagagaaaagtttgaaaagttttggg 213


Query: 491 atggagagtcggaggattggatgtatagaggagttcaaattgataataaaact 543
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atggagagtcggaggattggatgtatagaggagttcaaattgataataaaact 160

 Score =  143 bits (72), Expect(3) = 0.0
 Identities = 72/72 (100%)
 Strand = Plus / Minus


Query: 630 ctcactattatcaccaacatcctctctcaaaagagatagtagtcaattaaattccaatcc 689
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  ctcactattatcaccaacatcctctctcaaaagagatagtagtcaattaaattccaatcc 14


Query: 690 tcaacctattat 701
           ||||||||||||
Sbjct: 13  tcaacctattat 2

 Score = 89.7 bits (45), Expect(3) = 0.0
 Identities = 45/45 (100%)
 Strand = Plus / Minus


Query: 551 ttattcatgttaaatgtgttattgatgagaaacaggtttcaccta 595
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 ttattcatgttaaatgtgttattgatgagaaacaggtttcaccta 108

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 860,774,501
Number of extensions: 59960787
Number of successful extensions: 8579822
Number of sequences better than 10.0: 245
Length of query: 701
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 677
Effective length of database: 97,308,875,965
Effective search space: 65878109028305
Effective search space used: 65878109028305
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 6
Homology vs Protein 
Query= Contig-U13236-1 (Contig-U13236-1Q) /CSM_Contig/Contig-U13236-1Q.Seq.d
         (701 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF118223_20(AF118223|pid:none) Arabidopsis thaliana BAC T4B21.         91   3e-17
AK229122_1(AK229122|pid:none) Arabidopsis thaliana mRNA for hypo...    91   3e-17
AC074025_8(AC074025|pid:none) Arabidopsis thaliana chromosome 1 ...    85   2e-15
AB022072_1(AB022072|pid:none) Brassica rapa mRNA for S-locus pro...    85   2e-15
AJ271780_1(AJ271780|pid:none) Brassica napus mRNA for PCF11 puta...    83   9e-15
(Q10237) RecName: Full=Uncharacterized protein C4G9.04c;  &CU329...    82   1e-14
BC004648_1(BC004648|pid:none) Mus musculus cleavage and polyaden...    79   1e-13
BC150781_1(BC150781|pid:none) Mus musculus cleavage and polyaden...    79   1e-13
BC027361_1(BC027361|pid:none) Mus musculus cleavage and polyaden...    79   1e-13
(O94913) RecName: Full=Pre-mRNA cleavage complex 2 protein Pcf11...    79   1e-13
AK173035_1(AK173035|pid:none) Mus musculus mRNA for mKIAA0824 pr...    79   1e-13
BC085652_1(BC085652|pid:none) Danio rerio cleavage and polyadeny...    75   1e-12
BC167611_1(BC167611|pid:none) Xenopus tropicalis PCF11, cleavage...    75   2e-12
AP007161_845(AP007161|pid:none) Aspergillus oryzae RIB40 genomic...    75   2e-12
FM992693_170(FM992693|pid:none) Candida dubliniensis CD36 chromo...    75   2e-12
AL627325_4(AL627325|pid:none) Zebrafish DNA sequence from clone ...    71   4e-11
EF537861_1(EF537861|pid:none) Mus musculus strain C57BL/6J PCF11...    68   3e-10
EF537860_1(EF537860|pid:none) Mus musculus strain BALB/c PCF11 (...    68   3e-10
AE016820_559(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...    66   9e-10
AE013599_2075(AE013599|pid:none) Drosophila melanogaster chromos...    64   4e-09
CP000499_160(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...    64   4e-09
AK226757_1(AK226757|pid:none) Arabidopsis thaliana mRNA for hypo...    64   6e-09
C84781(C84781)hypothetical protein At2g36480 [imported] - Arabid...    64   6e-09
AC006919_11(AC006919|pid:none) Arabidopsis thaliana chromosome 2...    64   6e-09
FN392321_259(FN392321|pid:none) Pichia pastoris GS115 chromosome...    62   2e-08
CR382129_537(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...    60   6e-08
CR382126_580(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    59   1e-07
CP001329_58(CP001329|pid:none) Micromonas sp. RCC299 chromosome ...    57   4e-07
(P39081) RecName: Full=Protein PCF11; AltName: Full=protein 1 of...    57   5e-07
CR382138_518(CR382138|pid:none) Debaryomyces hansenii strain CBS...    54   6e-06
AP008215_1406(AP008215|pid:none) Oryza sativa (japonica cultivar...    54   6e-06
CU928173_412(CU928173|pid:none) Zygosaccharomyces rouxii strain ...    53   1e-05
AE017341_180(AE017341|pid:none) Cryptococcus neoformans var. neo...    51   3e-05
(Q09345) RecName: Full=Uncharacterized protein R144.2;  &T16758(...    44   0.004
CU638743_507(CU638743|pid:none) Podospora anserina genomic DNA c...    44   0.004
T49385(T49385)hypothetical protein B1D1.390 [imported] - Neurosp...    44   0.006
AL355927_22(AL355927|pid:none) Neurospora crassa DNA linkage gro...    44   0.006
AB210783_1(AB210783|pid:none) Ciona intestinalis mRNA for zinc f...    39   0.12
BC090088_1(BC090088|pid:none) Xenopus tropicalis zinc finger E-b...    39   0.15
DQ319867_1(DQ319867|pid:none) Xenopus laevis zinc finger homeobo...    39   0.15
(O29979) RecName: Full=Glutamyl-tRNA synthetase;          EC=6.1...    37   0.45
BT001899_1(BT001899|pid:none) Drosophila melanogaster SD20577 fu...    37   0.45
BC140859_1(BC140859|pid:none) Homo sapiens zinc finger protein 2...    37   0.45
AE014297_2647(AE014297|pid:none) Drosophila melanogaster chromos...    37   0.45
AB208834_1(AB208834|pid:none) Homo sapiens mRNA for Zinc finger ...    37   0.45
(O14213) RecName: Full=Meiotically up-regulated gene 185 protein...    37   0.77
CR382133_343(CR382133|pid:none) Debaryomyces hansenii strain CBS...    36   1.0
BC138187_1(BC138187|pid:none) Mus musculus zinc finger protein 2...    36   1.3
AY325179_1(AY325179|pid:none) Rattus norvegicus Ab2-002 mRNA, co...    36   1.3
(Q62947) RecName: Full=Zinc finger E-box-binding homeobox 1; Alt...    36   1.3
M63450_1(M63450|pid:none) Drosophila melanogaster zinc-finger ho...    34   3.8
(P28167) RecName: Full=Zinc finger protein 2; AltName: Full=Zinc...    34   3.8
AE014187_557(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    34   3.8
AK093518_1(AK093518|pid:none) Homo sapiens cDNA FLJ36199 fis, cl...    34   5.0
AY336933_1(AY336933|pid:none) Homo sapiens FRBZ1 (FRBZ1) mRNA, p...    34   5.0
AY163816_1(AY163816|pid:none) Homo sapiens FRBZ1 (FRBZ1) mRNA, p...    34   5.0
(Q5SVQ8) RecName: Full=Zinc finger and BTB domain-containing pro...    34   5.0
CP000559_203(CP000559|pid:none) Methanocorpusculum labreanum Z, ...    33   6.5
AE014185_77(AE014185|pid:none) Plasmodium falciparum 3D7 chromos...    33   8.5
CP000501_61(CP000501|pid:none) Pichia stipitis CBS 6054 chromoso...    33   8.5

>AF118223_20(AF118223|pid:none) Arabidopsis thaliana BAC T4B21.
          Length = 827

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 50/150 (33%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
 Frame = +1

Query: 160  LYKGYPLQCKTCSARFKTQDKMDQHMDHHYKVNQRIKKRAKHPMSRAWYLPEESWIGFKF 339
            LY   P QC TC  RFK Q++  +HMD H   N+  K   ++P SR W++    W+
Sbjct: 668  LYGDLPRQCTTCGLRFKCQEEHSKHMDWHVTKNRMSKNHKQNP-SRKWFVSASMWLS--- 723

Query: 340  DPSIDISEQPSIPFFNDTKKEVEVKIEPTLV--ADDDQTSCPVCREKFEKFWDGESEDWM 513
                +     ++P F  T+   E K +  +   AD+DQTSC +C E FE F+  E+E+WM
Sbjct: 724  --GAEALGAEAVPGFLPTEPTTEKKDDEDMAVPADEDQTSCALCGEPFEDFYSDETEEWM 781

Query: 514  YRGVQIDNKTKK------------IIHVKC 567
            Y+G    N  ++            I+H KC
Sbjct: 782  YKGAVYMNAPEESTTDMDKSQLGPIVHAKC 811

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 909,500,915
Number of extensions: 16537815
Number of successful extensions: 48044
Number of sequences better than 10.0: 60
Number of HSP's gapped: 47972
Number of HSP's successfully gapped: 63
Length of query: 233
Length of database: 1,051,180,864
Length adjustment: 124
Effective length of query: 109
Effective length of database: 649,847,548
Effective search space: 70833382732
Effective search space used: 70833382732
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.75  gvh: 0.25  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.12  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U13236-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0