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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U02126-1
Contig ID Contig-U02126-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U02126-1 (Contig-U02126-1Q) /CSM_Contig/Contig-U02126-1Q.Seq.d
ANATTTTAACTAAACNCGGNAAAACCNANAACCCANANCCNAANGNTNAN
GCNCCCNCTGGNTGNTTATTACAANACTATGGNNTAAAANAACANAACNT
NNACCCNGNTTTANTCGGNGGTTCNANANCCCNTGGNGNTTTANCNNCNN
TAGNTTGGGNTCGGANCNTAGGNCCCCCC
Gap no gap
Contig length 179
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U02126
List of clone(s) 

est1=VFE391Z,1,180
Translated Amino Acid sequence 
ILTKXGKTXNPXPXXXAPXGXLLQXYGXKXXNXXPXLXGGSXXXGXLXXXXWXRXXGPP
Translated Amino Acid sequence (All Frames) 
Frame A:
xf*lnxxkpxtxxxxxxxplxxyyxtmx*xnxtxtxxxsxvxxpxxxxxx*xgxgx*xp


Frame B:
xfn*trxnxxpxxxxxxxxwxxitxlwxkxtxxxpxfxrxfxxpwxfxxxxlgsxxrxp


Frame C:
ILTKXGKTXNPXPXXXAPXGXLLQXYGXKXXNXXPXLXGGSXXXGXLXXXXWXRXXGPP
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U02126-1 (Contig-U02126-1Q)
/CSM_Contig/Contig-U02126-1Q.Seq.d
         (179 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U02126-1 (Contig-U02126-1Q) /CSM_Contig/Conti...    64  5e-11

>Contig-U02126-1 (Contig-U02126-1Q) /CSM_Contig/Contig-U02126-1Q.Seq.d
          Length = 179

 Score = 63.9 bits (32), Expect = 5e-11
 Identities = 80/80 (100%)
 Strand = Plus / Plus

                                                                      
Query: 3  attttaactaaacncggnaaaaccnanaacccananccnaangntnangcncccnctggn 62
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3  attttaactaaacncggnaaaaccnanaacccananccnaangntnangcncccnctggn 62

                              
Query: 63 tgnttattacaanactatgg 82
          ||||||||||||||||||||
Sbjct: 63 tgnttattacaanactatgg 82


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 80
Number of Sequences: 6905
Number of extensions: 80
Number of successful extensions: 22
Number of sequences better than 10.0: 1
length of query: 179
length of database: 5,674,871
effective HSP length: 15
effective length of query: 164
effective length of database: 5,571,296
effective search space: 913692544
effective search space used: 913692544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5.14
Homology vs DNA 
Query= Contig-U02126-1 (Contig-U02126-1Q) /CSM_Contig/Contig-U02126-1Q.Seq.d
         (179 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ431083) Dictyostelium discoideum cDNA clone:ddv9f23, 3' e...    96   5e-16  1
(BJ430686) Dictyostelium discoideum cDNA clone:ddv8f11, 3' e...    82   8e-12  1
(BJ430755) Dictyostelium discoideum cDNA clone:ddv8i17, 3' e...    78   1e-10  1
(BJ432484) Dictyostelium discoideum cDNA clone:ddv18g21, 3' ...    76   5e-10  1
(BJ375689) Dictyostelium discoideum cDNA clone:ddc19j16, 3' ...    76   5e-10  1
(AU270395) Dictyostelium discoideum vegetative cDNA clone:VS...    70   3e-08  1
(BJ434206) Dictyostelium discoideum cDNA clone:ddv16o02, 3' ...    66   5e-07  1
(BJ433796) Dictyostelium discoideum cDNA clone:ddv22p19, 3' ...    66   5e-07  1
(BJ432384) Dictyostelium discoideum cDNA clone:ddv18d18, 3' ...    66   5e-07  1
(BJ347368) Dictyostelium discoideum cDNA clone:dda26k24, 3' ...    66   5e-07  1
(AU271277) Dictyostelium discoideum vegetative cDNA clone:VS...    64   2e-06  1
(AU270258) Dictyostelium discoideum vegetative cDNA clone:VS...    64   2e-06  1
(AU270257) Dictyostelium discoideum vegetative cDNA clone:VS...    64   2e-06  1
(AU263163) Dictyostelium discoideum vegetative cDNA clone:VS...    64   2e-06  1
(AU261826) Dictyostelium discoideum vegetative cDNA clone:VS...    64   2e-06  1
(AU261819) Dictyostelium discoideum vegetative cDNA clone:VS...    64   2e-06  1
(AU053464) Dictyostelium discoideum slug cDNA, clone SLI709.       64   2e-06  1
(AU053365) Dictyostelium discoideum slug cDNA, clone SLI468.       64   2e-06  1
(C23820) Dictyostelium discoideum gamete cDNA, clone FCL-AB18.     64   2e-06  1
(BJ436365) Dictyostelium discoideum cDNA clone:ddv30o20, 3' ...    64   2e-06  1
(BJ436136) Dictyostelium discoideum cDNA clone:ddv30h04, 3' ...    64   2e-06  1
(BJ436051) Dictyostelium discoideum cDNA clone:ddv29o13, 3' ...    64   2e-06  1
(BJ435631) Dictyostelium discoideum cDNA clone:ddv27a23, 3' ...    64   2e-06  1
(BJ434286) Dictyostelium discoideum cDNA clone:ddv16m11, 3' ...    64   2e-06  1
(BJ433554) Dictyostelium discoideum cDNA clone:ddv22b10, 3' ...    64   2e-06  1
(BJ433476) Dictyostelium discoideum cDNA clone:ddv22c03, 3' ...    64   2e-06  1
(BJ433294) Dictyostelium discoideum cDNA clone:ddv21i11, 3' ...    64   2e-06  1
(BJ432937) Dictyostelium discoideum cDNA clone:ddv20e08, 3' ...    64   2e-06  1
(BJ432134) Dictyostelium discoideum cDNA clone:ddv17c19, 3' ...    64   2e-06  1
(BJ431973) Dictyostelium discoideum cDNA clone:ddv17o05, 3' ...    64   2e-06  1
(BJ431855) Dictyostelium discoideum cDNA clone:ddv15f23, 3' ...    64   2e-06  1
(BJ431703) Dictyostelium discoideum cDNA clone:ddv15n03, 3' ...    64   2e-06  1
(BJ431329) Dictyostelium discoideum cDNA clone:ddv13d19, 3' ...    64   2e-06  1
(BJ431171) Dictyostelium discoideum cDNA clone:ddv13i03, 3' ...    64   2e-06  1
(BJ431125) Dictyostelium discoideum cDNA clone:ddv9o22, 3' e...    64   2e-06  1
(BJ430916) Dictyostelium discoideum cDNA clone:ddv9c09, 3' e...    64   2e-06  1
(BJ430854) Dictyostelium discoideum cDNA clone:ddv9e04, 3' e...    64   2e-06  1
(BJ430625) Dictyostelium discoideum cDNA clone:ddv8b05, 3' e...    64   2e-06  1
(BJ430594) Dictyostelium discoideum cDNA clone:ddv7j20, 3' e...    64   2e-06  1
(BJ430575) Dictyostelium discoideum cDNA clone:ddv7c24, 3' e...    64   2e-06  1
(BJ430496) Dictyostelium discoideum cDNA clone:ddv7p07, 3' e...    64   2e-06  1
(BJ430463) Dictyostelium discoideum cDNA clone:ddv7h11, 3' e...    64   2e-06  1
(BJ430211) Dictyostelium discoideum cDNA clone:ddv6p09, 3' e...    64   2e-06  1
(BJ429847) Dictyostelium discoideum cDNA clone:ddv5h04, 3' e...    64   2e-06  1
(BJ429663) Dictyostelium discoideum cDNA clone:ddv4p08, 3' e...    64   2e-06  1
(BJ429658) Dictyostelium discoideum cDNA clone:ddv4n11, 3' e...    64   2e-06  1
(BJ429213) Dictyostelium discoideum cDNA clone:ddv2a19, 3' e...    64   2e-06  1
(BJ429123) Dictyostelium discoideum cDNA clone:ddv2n09, 3' e...    64   2e-06  1
(BJ429047) Dictyostelium discoideum cDNA clone:ddv2n03, 3' e...    64   2e-06  1
(BJ428737) Dictyostelium discoideum cDNA clone:ddv1f01, 3' e...    64   2e-06  1
(BJ428597) Dictyostelium discoideum cDNA clone:ddv12e16, 3' ...    64   2e-06  1
(BJ428486) Dictyostelium discoideum cDNA clone:ddv12j06, 3' ...    64   2e-06  1
(BJ428338) Dictyostelium discoideum cDNA clone:ddv11g14, 3' ...    64   2e-06  1
(BJ428147) Dictyostelium discoideum cDNA clone:ddv10m19, 3' ...    64   2e-06  1
(BJ428053) Dictyostelium discoideum cDNA clone:ddv10h17, 3' ...    64   2e-06  1
(BJ428021) Dictyostelium discoideum cDNA clone:ddv10a18, 3' ...    64   2e-06  1
(BJ402004) Dictyostelium discoideum cDNA clone:dds20j03, 3' ...    64   2e-06  1
(BJ401346) Dictyostelium discoideum cDNA clone:dds22o23, 3' ...    64   2e-06  1
(BJ401198) Dictyostelium discoideum cDNA clone:dds22o12, 3' ...    64   2e-06  1
(BJ401167) Dictyostelium discoideum cDNA clone:dds22j08, 3' ...    64   2e-06  1
(BJ401149) Dictyostelium discoideum cDNA clone:dds22e12, 3' ...    64   2e-06  1
(BJ400635) Dictyostelium discoideum cDNA clone:dds14i03, 3' ...    64   2e-06  1
(BJ399566) Dictyostelium discoideum cDNA clone:dds6d16, 3' e...    64   2e-06  1
(BJ399219) Dictyostelium discoideum cDNA clone:dds4h23, 3' e...    64   2e-06  1
(BJ398995) Dictyostelium discoideum cDNA clone:dds3d17, 3' e...    64   2e-06  1
(BJ398466) Dictyostelium discoideum cDNA clone:dds12e15, 3' ...    64   2e-06  1
(BJ375161) Dictyostelium discoideum cDNA clone:ddc17m15, 3' ...    64   2e-06  1
(BJ374074) Dictyostelium discoideum cDNA clone:ddc6l09, 3' e...    64   2e-06  1
(BJ371880) Dictyostelium discoideum cDNA clone:ddc10j02, 3' ...    64   2e-06  1
(BJ347259) Dictyostelium discoideum cDNA clone:dda26g15, 3' ...    64   2e-06  1
(BJ345383) Dictyostelium discoideum cDNA clone:dda23d14, 3' ...    64   2e-06  1
(BJ345289) Dictyostelium discoideum cDNA clone:dda23a09, 3' ...    64   2e-06  1
(BJ343985) Dictyostelium discoideum cDNA clone:dda17g21, 3' ...    64   2e-06  1
(BJ342960) Dictyostelium discoideum cDNA clone:dda15g16, 3' ...    64   2e-06  1
(BJ342375) Dictyostelium discoideum cDNA clone:dda13o16, 3' ...    64   2e-06  1
(BJ342124) Dictyostelium discoideum cDNA clone:dda9i17, 3' e...    64   2e-06  1
(BJ341749) Dictyostelium discoideum cDNA clone:dda8d03, 3' e...    64   2e-06  1
(BJ341728) Dictyostelium discoideum cDNA clone:dda7n24, 3' e...    64   2e-06  1
(BJ341653) Dictyostelium discoideum cDNA clone:dda7i14, 3' e...    64   2e-06  1
(BJ340256) Dictyostelium discoideum cDNA clone:dda12g07, 3' ...    64   2e-06  1
(BJ435245) Dictyostelium discoideum cDNA clone:ddv26d18, 3' ...    60   3e-05  1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    58   1e-04  1
(BJ428429) Dictyostelium discoideum cDNA clone:ddv11l22, 3' ...    58   1e-04  1
(AU261974) Dictyostelium discoideum vegetative cDNA clone:VS...    52   0.007  1
(BJ431900) Dictyostelium discoideum cDNA clone:ddv17a01, 3' ...    44   1.7    1
(BJ436097) Dictyostelium discoideum cDNA clone:ddv29o24, 3' ...    42   6.5    1
(BJ431444) Dictyostelium discoideum cDNA clone:ddv14o02, 3' ...    42   6.5    1
(BJ429870) Dictyostelium discoideum cDNA clone:ddv5m04, 3' e...    42   6.5    1
(BJ374855) Dictyostelium discoideum cDNA clone:ddc16e13, 3' ...    42   6.5    1
(BJ341716) Dictyostelium discoideum cDNA clone:dda7j24, 3' e...    42   6.5    1

>(BJ431083) Dictyostelium discoideum cDNA clone:ddv9f23, 3' end,
           single read.
          Length = 180

 Score = 95.6 bits (48), Expect = 5e-16
 Identities = 177/177 (100%)
 Strand = Plus / Minus


Query: 3   attttaactaaacncggnaaaaccnanaacccananccnaangntnangcncccnctggn 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 attttaactaaacncggnaaaaccnanaacccananccnaangntnangcncccnctggn 119


Query: 63  tgnttattacaanactatggnntaaaanaacanaacntnnacccngntttantcggnggt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 tgnttattacaanactatggnntaaaanaacanaacntnnacccngntttantcggnggt 59


Query: 123 tcnanancccntggngntttancnncnntagnttgggntcggancntaggncccccc 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  tcnanancccntggngntttancnncnntagnttgggntcggancntaggncccccc 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 10,726,108
Number of extensions: 598139
Number of successful extensions: 80921
Number of sequences better than 10.0: 90
Length of query: 179
Length of database: 101,790,757,118
Length adjustment: 22
Effective length of query: 157
Effective length of database: 99,544,435,898
Effective search space: 15628476435986
Effective search space used: 15628476435986
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.19
Homology vs Protein 
Query= Contig-U02126-1 (Contig-U02126-1Q) /CSM_Contig/Contig-U02126-1Q.Seq.d
         (179 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_8(AC116305|pid:none) Dictyostelium discoideum chromosom...    50   2e-05
(Q553V1) RecName: Full=Citrate synthase, mitochondrial;         ...    50   2e-05
AM502236_70(AM502236|pid:none) Leishmania infantum chromosome 18.      47   2e-04
AM494955_76(AM494955|pid:none) Leishmania braziliensis chromosom...    47   3e-04
EZ000444_1(EZ000444|pid:none) TSA: Culex tarsalis Ctar-290 citra...    47   3e-04
AY069260_1(AY069260|pid:none) Drosophila melanogaster GM05016 fu...    47   3e-04
AM263442_1(AM263442|pid:none) Lubomirskia baicalensis partial mR...    45   0.001
(A4HXU4) RecName: Full=Probable citrate synthase, mitochondrial;...    44   0.002
(Q4QDX3) RecName: Full=Probable citrate synthase, mitochondrial;...    44   0.002
(Q0GNE0) RecName: Full=Citrate synthase, mitochondrial;         ...    44   0.002
(Q0GNE1) RecName: Full=Citrate synthase, mitochondrial;         ...    44   0.002
(A4H9H8) RecName: Full=Probable citrate synthase, mitochondrial;...    44   0.002
AK005713_1(AK005713|pid:none) Mus musculus adult male testis cDN...    43   0.004
AK161295_1(AK161295|pid:none) Mus musculus adult male testis cDN...    43   0.004
DQ403122_1(DQ403122|pid:none) Loxodonta africana citrate synthas...    42   0.005
FM865901_1(FM865901|pid:none) Brissopsis lyrifera partial mRNA f...    42   0.007
DQ403130_1(DQ403130|pid:none) Oryctolagus cuniculus citrate synt...    42   0.009
DQ403126_1(DQ403126|pid:none) Rattus norvegicus citrate synthase...    42   0.009
(Q7ZWZ5) RecName: Full=Citrate synthase, mitochondrial;         ...    42   0.009
AY816050_1(AY816050|pid:none) Schistosoma japonicum SJCHGC00653 ...    42   0.009
(Q29RK1) RecName: Full=Citrate synthase, mitochondrial;         ...    42   0.009
DQ403125_1(DQ403125|pid:none) Mus musculus citrate synthase (CS)...    42   0.009
DQ403129_1(DQ403129|pid:none) Lepus europaeus citrate synthase (...    42   0.009
AP007162_524(AP007162|pid:none) Aspergillus oryzae RIB40 genomic...    41   0.012
AF053631_1(AF053631|pid:none) Homo sapiens citrate synthase mRNA...    41   0.012
(P0C1Z2) RecName: Full=Citrate synthase, mitochondrial;         ...    41   0.012
AK095856_1(AK095856|pid:none) Homo sapiens cDNA FLJ38537 fis, cl...    41   0.012
DQ403131_1(DQ403131|pid:none) Tadarida brasiliensis citrate synt...    41   0.012
(P51044) RecName: Full=Citrate synthase, mitochondrial;         ...    41   0.012
(Q6S9V8) RecName: Full=Citrate synthase, mitochondrial;         ...    41   0.012
M84187_1(M84187|pid:none) N.crassa mitochondrial citrate synthas...    41   0.012
NRL(2CTS) citrate (si)-synthase (EC 4.1.3.7) (with citrate coenz...    41   0.012
AJ243204_1(AJ243204|pid:none) Aspergilluse niger citA gene for c...    41   0.012
BX640838_1(BX640838|pid:none) Homo sapiens mRNA; cDNA DKFZp686D2...    41   0.012
NRL(1CTS) citrate (si)-synthase (EC 4.1.3.7) (with citrate) - pi...    41   0.012
AJ296102_1(AJ296102|pid:none) Podospora anserina cit1 gene for m...    41   0.012
(P34085) RecName: Full=Citrate synthase, mitochondrial;         ...    41   0.012
BC166040_1(BC166040|pid:none) Danio rerio citrate synthase, mRNA...    41   0.012
(Q6S9V7) RecName: Full=Citrate synthase, mitochondrial;         ...    41   0.012
AF047042_1(AF047042|pid:none) Homo sapiens citrate synthase mRNA...    41   0.012
(P00889) RecName: Full=Citrate synthase, mitochondrial;         ...    41   0.012
DQ403120_1(DQ403120|pid:none) Didelphis virginiana citrate synth...    41   0.012
DQ403132_1(DQ403132|pid:none) Homo sapiens citrate synthase (CS)...    41   0.012
AM920427_540(AM920427|pid:none) Penicillium chrysogenum Wisconsi...    41   0.015
CP000585_177(CP000585|pid:none) Ostreococcus lucimarinus CCE9901...    40   0.026
DQ403124_1(DQ403124|pid:none) Tamandua tetradactyla citrate synt...    40   0.026
DQ403121_1(DQ403121|pid:none) Sminthopsis douglasi citrate synth...    40   0.026
DQ403136_1(DQ403136|pid:none) Felis catus citrate synthase (CS) ...    40   0.026
FM992695_315(FM992695|pid:none) Candida dubliniensis CD36 chromo...    40   0.034
CR380954_165(CR380954|pid:none) Candida glabrata strain CBS138 c...    40   0.034
CU928180_527(CU928180|pid:none) Kluyveromyces thermotolerans str...    40   0.034
(P08679) RecName: Full=Citrate synthase, peroxisomal;          E...    40   0.034
DQ674540_1(DQ674540|pid:none) Coccidioides posadasii citrate syn...    39   0.044
CR382138_880(CR382138|pid:none) Debaryomyces hansenii strain CBS...    39   0.044
DQ403128_1(DQ403128|pid:none) Cavia porcellus citrate synthase (...    39   0.044
CP000502_263(CP000502|pid:none) Pichia stipitis CBS 6054 chromos...    39   0.044
DQ403127_1(DQ403127|pid:none) Mesocricetus auratus citrate synth...    39   0.058
DQ403134_1(DQ403134|pid:none) Tupaia glis citrate synthase (CS) ...    39   0.058
(P23007) RecName: Full=Citrate synthase, mitochondrial;         ...    39   0.058
CR382131_112(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...    39   0.058
DQ403140_1(DQ403140|pid:none) Bos taurus citrate synthase (CS) m...    39   0.058
AM989984_29(AM989984|pid:none) Zygosaccharomyces rouxii strain C...    39   0.058
AF193854_1(AF193854|pid:none) Saccharomyces kluyveri putative ci...    39   0.076
DQ403123_1(DQ403123|pid:none) Dasypus novemcinctus citrate synth...    39   0.076
AB272085_1(AB272085|pid:none) Phanerochaete chrysosporium Cit1 m...    39   0.076
AY144810_1(AY144810|pid:none) Saccharomyces bayanus clone Contig...    39   0.076
AM920435_1351(AM920435|pid:none) Penicillium chrysogenum Wiscons...    39   0.076
DQ403142_1(DQ403142|pid:none) Hippopotamus amphibius citrate syn...    39   0.076
(P00890) RecName: Full=Citrate synthase, mitochondrial;         ...    39   0.076
FN392319_422(FN392319|pid:none) Pichia pastoris GS115 chromosome...    38   0.099
AE014297_1491(AE014297|pid:none) Drosophila melanogaster chromos...    38   0.099
(O80433) RecName: Full=Citrate synthase, mitochondrial;         ...    38   0.099
AE016814_190(AE016814|pid:none) Ashbya gossypii (= Eremothecium ...    38   0.099
T09334(T09334) citrate (si)-synthase (EC 4.1.3.7), mitochondrial...    38   0.13
AY144996_1(AY144996|pid:none) Saccharomyces kluyveri clone Conti...    38   0.13
(Q9TEM3) RecName: Full=2-methylcitrate synthase, mitochondrial; ...    38   0.13
AP007150_478(AP007150|pid:none) Aspergillus oryzae RIB40 genomic...    38   0.13
(Q61JF9) RecName: Full=Probable citrate synthase, mitochondrial;...    37   0.17
(P34575) RecName: Full=Probable citrate synthase, mitochondrial;...    37   0.17
CP001124_1637(CP001124|pid:none) Geobacter bemidjiensis Bem, com...    37   0.22
DQ403133_1(DQ403133|pid:none) Aotus trivirgatus citrate synthase...    37   0.22
CP000698_1554(CP000698|pid:none) Geobacter uraniireducens Rf4, c...    37   0.22
AY085647_1(AY085647|pid:none) Arabidopsis thaliana clone 16528 m...    36   0.38
CP000251_3658(CP000251|pid:none) Anaeromyxobacter dehalogenans 2...    36   0.38
(P20115) RecName: Full=Citrate synthase 4, mitochondrial;       ...    36   0.38
CR382131_22(CR382131|pid:none) Yarrowia lipolytica strain CLIB12...    36   0.38
AK243001_1(AK243001|pid:none) Oryza sativa Japonica Group cDNA, ...    36   0.49
BT054477_1(BT054477|pid:none) Zea mays full-length cDNA clone ZM...    36   0.49
A46546_1(A46546|pid:none) Sequence 2 from Patent WO9524487.  &X8...    36   0.49
AK072950_1(AK072950|pid:none) Oryza sativa Japonica Group cDNA c...    36   0.49
CU633872_205(CU633872|pid:none) Podospora anserina genomic DNA c...    35   0.64
DQ849026_1(DQ849026|pid:none) Hypocrea jecorina citrate synthase...    35   0.64
CR382125_620(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    35   1.1
AE016820_370(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...    35   1.1
CU928178_181(CU928178|pid:none) Zygosaccharomyces rouxii strain ...    35   1.1
DQ403135_1(DQ403135|pid:none) Canis familiaris citrate synthase ...    34   1.4
AY144919_1(AY144919|pid:none) Saccharomyces castellii clone Cont...    34   1.4
DQ403119_1(DQ403119|pid:none) Monodelphis domestica citrate synt...    34   1.4
CR380948_153(CR380948|pid:none) Candida glabrata strain CBS138 c...    34   1.9
EF489424_1(EF489424|pid:none) Toxoplasma gondii mitochondrial ci...    34   1.9
CP000482_1117(CP000482|pid:none) Pelobacter propionicus DSM 2379...    33   3.2
CR548612_250(CR548612|pid:none) Paramecium tetraurelia macronucl...    33   3.2
AP006840_2542(AP006840|pid:none) Symbiobacterium thermophilum IA...    33   3.2
AY126274_1(AY126274|pid:none) Candida krusei citrate synthase (C...    33   4.2
(P79024) RecName: Full=Citrate synthase, mitochondrial;         ...    32   7.1
AY490258_1(AY490258|pid:none) Geobacter metallireducens citrate ...    32   9.3

>AC116305_8(AC116305|pid:none) Dictyostelium discoideum chromosome 2
           map 1005175-1418323 strain AX4, complete sequence.
          Length = 460

 Score = 50.4 bits (119), Expect = 2e-05
 Identities = 28/59 (47%), Positives = 28/59 (47%)
 Frame = +3

Query: 3   ILTKXGKTXNPXPXXXAPXGXLLQXYGXKXXNXXPXLXGGSXXXGXLXXXXWXRXXGPP 179
           ILTK GKT NP P   A  G LLQ YG K  N    L G S   G L    W R  G P
Sbjct: 379 ILTKHGKTKNPYPNVDAHSGCLLQYYGLKEHNFYTVLFGVSRAIGVLSSLVWDRILGHP 437

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 90,711,366
Number of extensions: 7070353
Number of successful extensions: 133
Number of sequences better than 10.0: 106
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 106
Length of query: 59
Length of database: 1,051,180,864
Length adjustment: 31
Effective length of query: 28
Effective length of database: 950,847,535
Effective search space: 26623730980
Effective search space used: 26623730980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 26 (14.6 bits)
PSORT 

 psg: 0.84  gvh: 0.52  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: cytoskeletal
	 16.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U02126-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0